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Fernández A, Classen A, Josyula N, Florence JT, Sokolov AV, Scully MO, Straight P, Verhoef AJ. Simultaneous Two- and Three-Photon Deep Imaging of Autofluorescence in Bacterial Communities. SENSORS (BASEL, SWITZERLAND) 2024; 24:667. [PMID: 38276359 PMCID: PMC10819415 DOI: 10.3390/s24020667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 01/17/2024] [Accepted: 01/18/2024] [Indexed: 01/27/2024]
Abstract
The intrinsic fluorescence of bacterial samples has a proven potential for label-free bacterial characterization, monitoring bacterial metabolic functions, and as a mechanism for tracking the transport of relevant components through vesicles. The reduced scattering and axial confinement of the excitation offered by multiphoton imaging can be used to overcome some of the limitations of single-photon excitation (e.g., scattering and out-of-plane photobleaching) to the imaging of bacterial communities. In this work, we demonstrate in vivo multi-photon microscopy imaging of Streptomyces bacterial communities, based on the excitation of blue endogenous fluorophores, using an ultrafast Yb-fiber laser amplifier. Its parameters, such as the pulse energy, duration, wavelength, and repetition rate, enable in vivo multicolor imaging with a single source through the simultaneous two- and three-photon excitation of different fluorophores. Three-photon excitation at 1040 nm allows fluorophores with blue and green emission spectra to be addressed (and their corresponding ultraviolet and blue single-photon excitation wavelengths, respectively), and two-photon excitation at the same wavelength allows fluorophores with yellow, orange, or red emission spectra to be addressed (and their corresponding green, yellow, and orange single-photon excitation wavelengths). We demonstrate that three-photon excitation allows imaging over a depth range of more than 6 effective attenuation lengths to take place, corresponding to an 800 micrometer depth of imaging, in samples with a high density of fluorescent structures.
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Affiliation(s)
- Alma Fernández
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA;
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA; (A.V.S.); (M.O.S.)
| | - Anton Classen
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA;
| | - Nityakalyani Josyula
- Department of Biochemistry and Biophysics, Texas A&M University, TAMU 2128, College Station, TX 77843, USA; (N.J.); (P.S.)
| | - James T. Florence
- Department of Physics & Astronomy, Texas A&M University, TAMU 4242, College Station, TX 77843, USA;
| | - Alexei V. Sokolov
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA; (A.V.S.); (M.O.S.)
- Department of Physics & Astronomy, Texas A&M University, TAMU 4242, College Station, TX 77843, USA;
| | - Marlan O. Scully
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA; (A.V.S.); (M.O.S.)
| | - Paul Straight
- Department of Biochemistry and Biophysics, Texas A&M University, TAMU 2128, College Station, TX 77843, USA; (N.J.); (P.S.)
| | - Aart J. Verhoef
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA;
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA; (A.V.S.); (M.O.S.)
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2
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Fernández A, Straw A, Distel M, Leitgeb R, Baltuska A, Verhoef AJ. Dynamic real-time subtraction of stray-light and background for multiphoton imaging. BIOMEDICAL OPTICS EXPRESS 2021; 12:288-302. [PMID: 33659077 PMCID: PMC7899518 DOI: 10.1364/boe.403255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 10/13/2020] [Accepted: 11/17/2020] [Indexed: 06/12/2023]
Abstract
We introduce a new approach to reduce uncorrelated background signals from fluorescence imaging data, using real-time subtraction of background light. This approach takes advantage of the short fluorescence lifetime of most popular fluorescent activity reporters, and the low duty-cycle of ultrafast lasers. By synchronizing excitation and recording, laser-induced multiphoton fluorescence can be discriminated from background light levels with each laser pulse. We demonstrate the ability of our method to - in real-time - remove image artifacts that in a conventional imaging setup lead to clipping of the signal. In other words, our method enables imaging under conditions that in a conventional setup would yield corrupted data from which no accurate information can be extracted. This is advantageous in experimental setups requiring additional light sources for applications such as optogenetic stimulation.
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Affiliation(s)
- A Fernández
- IQSE and Department of Soil and Crop Sciences, Texas A&M University, 4242 TAMU, College Station, TX 77843, USA
- Photonics Institute, TU Wien, Gusshausstrasse 27-29/387, 1040 Vienna, Austria
- Centro Regional Universitario de Coclé, Universidad de Panamá, Penonomé, Coclé, Panama
| | - A Straw
- Institute of Biology I and Bernstein Center Freiburg, University of Freiburg, Hauptstrasse 1, 79104 Freiburg, Germany
| | - M Distel
- St. Anna Children's Cancer Research Institute, Zimmermannplatz 10, 1090 Vienna, Austria
| | - R Leitgeb
- Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Währinger Gürtel 18-20/4L, 1090 Vienna, Austria
| | - A Baltuska
- Photonics Institute, TU Wien, Gusshausstrasse 27-29/387, 1040 Vienna, Austria
| | - A J Verhoef
- IQSE and Department of Soil and Crop Sciences, Texas A&M University, 4242 TAMU, College Station, TX 77843, USA
- Photonics Institute, TU Wien, Gusshausstrasse 27-29/387, 1040 Vienna, Austria
- Centro Regional Universitario de Coclé, Universidad de Panamá, Penonomé, Coclé, Panama
- Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Währinger Gürtel 18-20/4L, 1090 Vienna, Austria
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3
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Luo D, Liu Y, Gu C, Zhu Z, Deng Z, Zhou L, Di Y, Xie G, Li W. 130 W, 180 fs ultrafast Yb-doped fiber frequency comb based on chirped-pulse fiber amplification. OPTICS EXPRESS 2020; 28:4817-4824. [PMID: 32121713 DOI: 10.1364/oe.386211] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Accepted: 01/28/2020] [Indexed: 06/10/2023]
Abstract
We report on a high-power fiber optical frequency comb consisting of a 250-MHz mode-locked fiber laser and a three-stage cascaded fiber chirped-pulse amplification system. After power scaling, the group velocity dispersion and third-order dispersion, generated in fiber stretcher and amplifiers, are compensated by a grism compressor, outputting a 132-W, 180-fs pulse train. The repetition rate and carrier-envelope offset frequency are locked to a Rb clock with the standard deviations of 1.07 and 0.87 mHz, corresponding to the fractional instability of 8.3×10-13 and 1.35×10-19, respectively. Moreover, we investigate the noise characteristics at high average powers, presenting a low-noise property of this high-power fiber OFC.
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Lavenu L, Natile M, Guichard F, Zaouter Y, Hanna M, Mottay E, Georges P. High-energy few-cycle Yb-doped fiber amplifier source based on a single nonlinear compression stage. OPTICS EXPRESS 2017; 25:7530-7537. [PMID: 28380874 DOI: 10.1364/oe.25.007530] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
A simple, compact, and efficient few-cycle laser source at a central wavelength of 1 µm is presented. The system is based on a high-energy femtosecond ytterbium-doped fiber amplifier delivering 130 fs, 250 µJ pulses at 200 kHz, corresponding to 1.5 GW of peak power and an average power of 50 W. The unprecedented short pulse duration at the output of this system is obtained by use of spectral intensity and phase shaping, allowing for both gain narrowing mitigation and the compensation of the nonlinear accumulated spectral phase. This laser source is followed by a single-stage of nonlinear compression in a xenon-filled capillary, allowing for the generation of 14 fs, 120 µJ pulses at 200 kHz resulting in 24 W of average power. High-harmonic generation driven by this type of source will trigger numerous new applications in the XUV range and attosecond science.
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5
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Prevedel R, Verhoef AJ, Pernía-Andrade AJ, Weisenburger S, Huang BS, Nöbauer T, Fernández A, Delcour JE, Golshani P, Baltuska A, Vaziri A. Fast volumetric calcium imaging across multiple cortical layers using sculpted light. Nat Methods 2016; 13:1021-1028. [PMID: 27798612 DOI: 10.1038/nmeth.4040] [Citation(s) in RCA: 95] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2016] [Accepted: 09/29/2016] [Indexed: 01/17/2023]
Abstract
Although whole-organism calcium imaging in small and semi-transparent animals has been demonstrated, capturing the functional dynamics of large-scale neuronal circuits in awake behaving mammals at high speed and resolution has remained one of the main frontiers in systems neuroscience. Here we present a method based on light sculpting that enables unbiased single- and dual-plane high-speed (up to 160 Hz) calcium imaging as well as in vivo volumetric calcium imaging of a mouse cortical column (0.5 mm × 0.5 mm × 0.5 mm) at single-cell resolution and fast volume rates (3-6 Hz). We achieved this by tailoring the point-spread function of our microscope to the structures of interest while maximizing the signal-to-noise ratio using a home-built fiber laser amplifier with pulses that are synchronized to the imaging voxel speed. This enabled in vivo recording of calcium dynamics of several thousand neurons across cortical layers and in the hippocampus of awake behaving mice.
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Affiliation(s)
- Robert Prevedel
- Research Institute of Molecular Pathology, Vienna, Austria.,Max F. Perutz Laboratories Support GmbH, University of Vienna, Vienna, Austria.,Research Platform Quantum Phenomena &Nanoscale Biological Systems (QuNaBioS), University of Vienna, Vienna, Austria.,European Molecular Biology Laboratory, Heidelberg, Germany
| | - Aart J Verhoef
- Photonics Institute, TU Wien, Vienna, Austria.,Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | | | - Siegfried Weisenburger
- Research Institute of Molecular Pathology, Vienna, Austria.,The Rockefeller University, New York, New York, USA
| | - Ben S Huang
- Department of Neurology and Psychiatry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California, USA
| | - Tobias Nöbauer
- Research Institute of Molecular Pathology, Vienna, Austria.,The Rockefeller University, New York, New York, USA
| | - Alma Fernández
- Photonics Institute, TU Wien, Vienna, Austria.,Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | | | - Peyman Golshani
- Department of Neurology and Psychiatry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California, USA.,West Los Angeles Virginia Medical Center, Los Angeles, California, USA
| | | | - Alipasha Vaziri
- Research Institute of Molecular Pathology, Vienna, Austria.,Max F. Perutz Laboratories Support GmbH, University of Vienna, Vienna, Austria.,Research Platform Quantum Phenomena &Nanoscale Biological Systems (QuNaBioS), University of Vienna, Vienna, Austria.,The Rockefeller University, New York, New York, USA
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Li X, Reber MAR, Corder C, Chen Y, Zhao P, Allison TK. High-power ultrafast Yb:fiber laser frequency combs using commercially available components and basic fiber tools. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2016; 87:093114. [PMID: 27782582 DOI: 10.1063/1.4962867] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
We present a detailed description of the design, construction, and performance of high-power ultrafast Yb:fiber laser frequency combs in operation in our laboratory. We discuss two such laser systems: an 87 MHz, 9 W, 85 fs laser operating at 1060 nm and an 87 MHz, 80 W, 155 fs laser operating at 1035 nm. Both are constructed using low-cost, commercially available components, and can be assembled using only basic tools for cleaving and splicing single-mode fibers. We describe practical methods for achieving and characterizing low-noise single-pulse operation and long-term stability from Yb:fiber oscillators based on nonlinear polarization evolution. Stabilization of the combs using a variety of transducers, including a new method for tuning the carrier-envelope offset frequency, is discussed. High average power is achieved through chirped-pulse amplification in simple fiber amplifiers based on double-clad photonic crystal fibers. We describe the use of these combs in several applications, including ultrasensitive femtosecond time-resolved spectroscopy and cavity-enhanced high-order harmonic generation.
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Affiliation(s)
- Xinlong Li
- Stony Brook University, Stony Brook, New York 11794-3400, USA
| | | | | | - Yuning Chen
- Stony Brook University, Stony Brook, New York 11794-3400, USA
| | - Peng Zhao
- Stony Brook University, Stony Brook, New York 11794-3400, USA
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Wunram M, Storz P, Brida D, Leitenstorfer A. Ultrastable fiber amplifier delivering 145-fs pulses with 6-μJ energy at 10-MHz repetition rate. OPTICS LETTERS 2015; 40:823-826. [PMID: 25723442 DOI: 10.1364/ol.40.000823] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A high-power femtosecond Yb:fiber amplifier operating with exceptional noise performance and long-term stability is demonstrated. It generates a 10-MHz train of 145-fs pulses at 1.03 μm with peak powers above 36 MW. The system features a relative amplitude noise of 1.5·10⁻⁶ Hz(-1/2) at 1 MHz and drifts of the 60-W average power below 0.3% over 72 hours of continuous operation. The passively phase-stable Er:fiber seed system provides ultrabroadband pulses that are synchronized at a repetition rate of 40 MHz. This combination aims at new schemes for sensitive experiments in ultrafast scientific applications.
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Zhao J, Li W, Wang C, Liu Y, Zeng H. Pre-chirping management of a self-similar Yb-fiber amplifier towards 80 W average power with sub-40 fs pulse generation. OPTICS EXPRESS 2014; 22:32214-9. [PMID: 25607187 DOI: 10.1364/oe.22.032214] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
We report on the generation of 80-W average power 38-fs laser pulse from a 2-m polarization-maintaining large-mode-area photonic crystal fiber amplifier with high pump absorption coefficient. The pre-chirping management was demonstrated to play a key role on the self-similar amplification. The achieved spectral bandwidth and compressed pulse duration were determined by the interplay between self-phase modulation and finite gain bandwidth. The power scaling in the self-similar fiber amplifier system was eventually limited by the onset of stimulated Raman scattering.
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Verhoef AJ, Jespersen K, Andersen TV, Grüner-Nielsen L, Flöry T, Zhu L, Baltuška A, Fernández A. High peak-power monolithic femtosecond ytterbium fiber chirped pulse amplifier with a spliced-on hollow core fiber compressor. OPTICS EXPRESS 2014; 22:16759-16766. [PMID: 25090494 DOI: 10.1364/oe.22.016759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We demonstrate a monolithic Yb-fiber chirped pulse amplifier that uses a dispersion matched fiber stretcher and a spliced-on hollow core photonic bandgap fiber compressor. For an output energy of 77 nJ, 220 fs pulses with 92% of the energy contained in the main pulse, can be obtained with minimal nonlinearities in the system. 135 nJ pulses are obtained with 226 fs duration and 82 percent of the energy in the main pulse. Due to the good dispersion match of the stretcher to the hollow core photonic bandgap fiber compressor, the duration of the output pulses is within 10% of the Fourier limited duration.
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