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Avanzi E, Behera A, Contini D, Spinelli L, Dalla Mora A, Di Sieno L. Effects and correctability of pile-up distortion using established figures of merit in time-domain diffuse optics at extreme photon rates. Sci Rep 2022; 12:5417. [PMID: 35354888 PMCID: PMC8967884 DOI: 10.1038/s41598-022-09385-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 03/22/2022] [Indexed: 11/09/2022] Open
Abstract
Time-domain diffuse optics (TD-DO) allows one to probe diffusive media with recognized advantages over other working domains but suffers from a poor signal-to-noise ratio (SNR) resulting from the need to build-up the histogram of single-photon arrival times with maximum count rates (CR) of few percent of the laser pulse rate to avoid the so-called "pile-up" distortion. Here we explore the feasibility of TD-DO under severe pile-up conditions with a systematic in-silico/experimental study evaluating the effects and correctability of the distortion by means of shared figures of merit. In-silico, we demonstrate that pile-up correction allows one the retrieval of homogeneous optical properties with average error < 1% up to a CR > 99%, while the optimal CR needed to detect localized perturbation was found to be 83%. Experiments reported here confirm these findings despite exhibiting higher accuracy errors in the retrieval of homogeneous optical properties and higher noise in the detection of localized absorption perturbations, but in line with the state-of-the-art systems. This work validates a new working regime for TD-DO, demonstrating an increase of the SNR at constant acquisition time, but also potentially leading in the future to previously unrealizable measurements of dynamic phenomena or in spatial scanning applications.
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Affiliation(s)
- Elisabetta Avanzi
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Anurag Behera
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Davide Contini
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Lorenzo Spinelli
- Istituto di Fotonica e Nanotecnologie, Consiglio Nazionale delle Ricerche, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Alberto Dalla Mora
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy.
| | - Laura Di Sieno
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
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Ksantini N, Veilleux I, de Denus-Baillargeon MM, Orsini P, Dicaire I, Lecourt JB, Gognau A, Hernandez Y, Baylon A, Massabki M, Lesage F, Leblond F. Time-gated interferometric detection increases Raman scattering to fluorescence signal ratio in biological samples. JOURNAL OF BIOPHOTONICS 2022; 15:e202100188. [PMID: 34676670 DOI: 10.1002/jbio.202100188] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 09/04/2021] [Accepted: 10/06/2021] [Indexed: 06/13/2023]
Abstract
Attainable levels of signal-to-background ratio (SBR) in Raman spectroscopy of biological samples is limited by the presence of endogenous fluorophores. It is customary to remove the ubiquitous fluorescence background using postacquisition data processing. However, new approaches are needed to reduce background contributions and maximize the fraction of the sensor dynamical range occupied by Raman photons. Time-resolved detection using pulsed lasers and time-gated measurements can be used to address the signal-to-background problem in biological samples by limiting light detection to nonresonant interaction phenomena with relaxation time scales occurring on sub-nanosecond time scales, thereby excluding contributions from resonant phenomena such as fluorescence. A time-gated Fourier-transform spectrometer was assembled using a commercially available interferometer, a single channel single-photon avalanche diode and time tagging electronics. A time gate of 300 ps increased the signal-to-background-ratio of the 1440 cm-1 Raman band from 36% to 69% in an olive oil sample hereby demonstrating the potential of this approach for autofluorescence suppression.
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Affiliation(s)
- Nassim Ksantini
- Department of Engineering Physics, Polytechnique Montreal, Montreal, Quebec, Canada
- University of Montreal Hospital Research Centre (CRCHUM), Montreal, Quebec, Canada
| | - Israel Veilleux
- Department of Engineering Physics, Polytechnique Montreal, Montreal, Quebec, Canada
- University of Montreal Hospital Research Centre (CRCHUM), Montreal, Quebec, Canada
| | | | | | | | | | | | | | | | | | - Frederic Lesage
- Department of Electrical Engineering, Polytechnique Montreal, Montreal, Quebec, Canada
| | - Frederic Leblond
- Department of Engineering Physics, Polytechnique Montreal, Montreal, Quebec, Canada
- University of Montreal Hospital Research Centre (CRCHUM), Montreal, Quebec, Canada
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Abstract
This article reviews the past and current statuses of time-domain near-infrared spectroscopy (TD-NIRS) and imaging. Although time-domain technology is not yet widely employed due to its drawbacks of being cumbersome, bulky, and very expensive compared to commercial continuous wave (CW) and frequency-domain (FD) fNIRS systems, TD-NIRS has great advantages over CW and FD systems because time-resolved data measured by TD systems contain the richest information about optical properties inside measured objects. This article focuses on reviewing the theoretical background, advanced theories and methods, instruments, and studies on clinical applications for TD-NIRS including some clinical studies which used TD-NIRS systems. Major events in the development of TD-NIRS and imaging are identified and summarized in chronological tables and figures. Finally, prospects for TD-NIRS in the near future are briefly described.
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4
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Sinha L, Massanes F, Torres VC, Li C, Tichauer KM, Brankov JG. Comparison of time- and angular-domain scatter rejection in mesoscopic optical projection tomography: a simulation study. BIOMEDICAL OPTICS EXPRESS 2019; 10:747-760. [PMID: 30800512 PMCID: PMC6377887 DOI: 10.1364/boe.10.000747] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Revised: 12/12/2018] [Accepted: 01/10/2019] [Indexed: 06/09/2023]
Abstract
Optical imaging offers exquisite sensitivity and resolution for assessing biological tissue in microscopy applications; however, for samples that are greater than a few hundred microns in thickness (such as whole tissue biopsies), spatial resolution is substantially limited by the effects of light scattering. To improve resolution, time- and angular-domain methods have been developed to reject detection of highly scattered light. This work utilizes a modified version of a commonly used Monte Carlo light propagation software package (MCML) to present the first comparison of time- and angular-domain improvements in spatial resolution with respect to varying sample thickness and optical properties (absorption and scattering). Specific comparisons were made at various tissue thicknesses (1-6 mm) assuming either typical (average) soft tissue scattering properties, μs ' = 10 cm-1, or low scattering properties, μs ' = 3.4 cm-1, as measured in lymph nodes.
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Affiliation(s)
- L. Sinha
- Biomedical Engineering, Illinois Institute of Technology, 3255 South Dearborn Street, Chicago, IL 60616, USA
| | - F. Massanes
- Electrical and Computer Engineering, Illinois Institute of Technology, 3301 South Dearborn Street, Chicago, IL 60616, USA
| | - V. C. Torres
- Biomedical Engineering, Illinois Institute of Technology, 3255 South Dearborn Street, Chicago, IL 60616, USA
| | - C. Li
- Biomedical Engineering, Illinois Institute of Technology, 3255 South Dearborn Street, Chicago, IL 60616, USA
| | - K. M. Tichauer
- Biomedical Engineering, Illinois Institute of Technology, 3255 South Dearborn Street, Chicago, IL 60616, USA
| | - J. G. Brankov
- Electrical and Computer Engineering, Illinois Institute of Technology, 3301 South Dearborn Street, Chicago, IL 60616, USA
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5
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Cheng J, Cai C, Luo J. Reconstruction of high-resolution early-photon tomography based on the first derivative of temporal point spread function. JOURNAL OF BIOMEDICAL OPTICS 2018; 23:1-4. [PMID: 29943525 DOI: 10.1117/1.jbo.23.6.060503] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Accepted: 06/05/2018] [Indexed: 06/08/2023]
Abstract
For fluorescence molecular tomography, higher spatial resolution can be achieved using minimally scattered early photons. Conventional reconstruction methods of early photon tomography (EPT) are based on the integral of temporal point spread function (TPSF), which may lead to poor image quality due to systematic noise and time mismatch between the TPSF data and forward model. The derivative of the rising portion of TPSF is proposed to be used in EPT to increase the performance of reconstruction because the derivative is less sensitive to noise and time mismatch than the integral. A method based on projected Tikhonov regularization with the reconstructed result of steepest descent algorithm as a priori information is developed. Using the derivative of TPSF, the method can achieve high spatial resolution in phantom experiments and is capable of separating targets with an edge-edge distance of 1.5 mm.
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Affiliation(s)
- Jiaju Cheng
- Tsinghua University, School of Medicine, Department of Biomedical Engineering, Beijing, China
| | - Chuangjian Cai
- Tsinghua University, School of Medicine, Department of Biomedical Engineering, Beijing, China
| | - Jianwen Luo
- Tsinghua University, School of Medicine, Department of Biomedical Engineering, Beijing, China
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Sinha L, Fogarty M, Zhou W, Giudice A, Brankov JG, Tichauer KM. Design and characterization of a dead-time regime enhanced early photon projection imaging system. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:043707. [PMID: 29716355 PMCID: PMC6910604 DOI: 10.1063/1.5003620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Accepted: 03/25/2018] [Indexed: 06/08/2023]
Abstract
Scattering of visible and near-infrared light in biological tissue reduces spatial resolution for imaging of tissues thicker than 100 μm. In this study, an optical projection imaging system is presented and characterized that exploits the dead-time characteristics typical of photon counting modules based on single photon avalanche diodes (SPADs). With this system, it is possible to attenuate the detection of more scattered late-arriving photons, such that detection of less scattered early-arriving photons can be enhanced with increased light intensity, without being impeded by the maximum count rate of the SPADs. The system has the potential to provide transmittance-based anatomical information or fluorescence-based functional information (with slight modification in the instrumentation) of biological samples with improved resolution in the mesoscopic domain (0.1-2 cm). The system design, calibration, stability, and performance were evaluated using simulation and experimental phantom studies. The proposed system allows for the detection of very-rare early-photons at a higher frequency and with a better signal-to-noise ratio. The experimental results demonstrated over a 3.4-fold improvement in the spatial resolution using early photon detection vs. conventional detection, and a 1000-fold improvement in imaging time using enhanced early detection vs. conventional early photon detection in a 4-mm thick phantom with a tissue-equivalent absorption coefficient of μa = 0.05 mm-1 and a reduced scattering coefficient of μs' = 5 mm-1.
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Affiliation(s)
- L Sinha
- Biomedical Engineering, Illinois Institute of Technology, Chicago, Illinois 60616, USA
| | - M Fogarty
- Biomedical Engineering, Illinois Institute of Technology, Chicago, Illinois 60616, USA
| | - W Zhou
- Electrical and Computer Engineering, Illinois Institute of Technology, Chicago, Illinois 60616, USA
| | - A Giudice
- MPD Micro-Photon-Devices, Via Stradivari 4, 39100 Bolzano, Italy
| | - J G Brankov
- Biomedical Engineering, Illinois Institute of Technology, Chicago, Illinois 60616, USA
| | - K M Tichauer
- Biomedical Engineering, Illinois Institute of Technology, Chicago, Illinois 60616, USA
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Martelli F, Binzoni T. Heuristic model for ballistic photon detection in collimated transmittance measurements. OPTICS EXPRESS 2018; 26:744-761. [PMID: 29401955 DOI: 10.1364/oe.26.000744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Accepted: 11/10/2017] [Indexed: 06/07/2023]
Abstract
An heuristic model for ballistic photon detection in continuous-wave measurements of collimated transmittance through a slab is presented. The model is based on the small angle approximation and the diffusion equation and covers all the ranges of optical thicknesses of the slab from the ballistic to the diffusive regime. The performances of the model have been studied by means of comparisons with the results of gold standard Monte Carlo simulations for a wide range of optical thicknesses and two types of scattering functions. For a non-absorbing slab and field of view of the receiver less than 3° the model shows errors less than 15% for any value of the optical thickness. Even for an albedo value of 0.9, and field of view of the receiver less than 3° the model shows errors less than 20%. These results have been verified for a large set of scattering functions based on the Henyey-Greenstein model and Mie theory for spherical scatterers. The latter has also been used to simulate the scattering function of Intralipid, a diffusive material widely used as reference standard for tissue simulating phantoms. The proposed model represents an effective improvement compared to the existing literature.
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