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Barrile GM, Augustine DJ, Porensky LM, Duchardt CJ, Shoemaker KT, Hartway CR, Derner JD, Hunter EA, Davidson AD. A big data-model integration approach for predicting epizootics and population recovery in a keystone species. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2023; 33:e2827. [PMID: 36846939 DOI: 10.1002/eap.2827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 11/21/2022] [Accepted: 01/10/2023] [Indexed: 06/02/2023]
Abstract
Infectious diseases pose a significant threat to global health and biodiversity. Yet, predicting the spatiotemporal dynamics of wildlife epizootics remains challenging. Disease outbreaks result from complex nonlinear interactions among a large collection of variables that rarely adhere to the assumptions of parametric regression modeling. We adopted a nonparametric machine learning approach to model wildlife epizootics and population recovery, using the disease system of colonial black-tailed prairie dogs (BTPD, Cynomys ludovicianus) and sylvatic plague as an example. We synthesized colony data between 2001 and 2020 from eight USDA Forest Service National Grasslands across the range of BTPDs in central North America. We then modeled extinctions due to plague and colony recovery of BTPDs in relation to complex interactions among climate, topoedaphic variables, colony characteristics, and disease history. Extinctions due to plague occurred more frequently when BTPD colonies were spatially clustered, in closer proximity to colonies decimated by plague during the previous year, following cooler than average temperatures the previous summer, and when wetter winter/springs were preceded by drier summers/falls. Rigorous cross-validations and spatial predictions indicated that our final models predicted plague outbreaks and colony recovery in BTPD with high accuracy (e.g., AUC generally >0.80). Thus, these spatially explicit models can reliably predict the spatial and temporal dynamics of wildlife epizootics and subsequent population recovery in a highly complex host-pathogen system. Our models can be used to support strategic management planning (e.g., plague mitigation) to optimize benefits of this keystone species to associated wildlife communities and ecosystem functioning. This optimization can reduce conflicts among different landowners and resource managers, as well as economic losses to the ranching industry. More broadly, our big data-model integration approach provides a general framework for spatially explicit forecasting of disease-induced population fluctuations for use in natural resource management decision-making.
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Affiliation(s)
- Gabriel M Barrile
- Colorado Natural Heritage Program, Colorado State University, Fort Collins, Colorado, USA
- Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, Colorado, USA
| | | | | | - Courtney J Duchardt
- Department of Natural Resource Ecology and Management, Oklahoma State University, Stillwater, Oklahoma, USA
| | - Kevin T Shoemaker
- Department of Natural Resources and Environmental Science, University of Nevada, Reno, Nevada, USA
| | | | | | - Elizabeth A Hunter
- U.S. Geological Survey, Virginia Cooperative Fish and Wildlife Research Unit, Department of Fisheries and Wildlife Conservation, Virginia Tech, Blacksburg, Virginia, USA
| | - Ana D Davidson
- Colorado Natural Heritage Program, Colorado State University, Fort Collins, Colorado, USA
- Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, Colorado, USA
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Duchardt CJ, Augustine DJ, Porensky LM, Beck JL, Hennig JD, Pellatz DW, Scasta JD, Connell LC, Davidson AD. Disease and weather induce rapid shifts in a rangeland ecosystem mediated by a keystone species (Cynomys ludovicianus). ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2023; 33:e2712. [PMID: 36404372 DOI: 10.1002/eap.2712] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 05/27/2022] [Accepted: 06/06/2022] [Indexed: 06/16/2023]
Abstract
Habitat loss and changing climate have direct impacts on native species but can also interact with disease pathogens to influence wildlife communities. In the North American Great Plains, black-tailed prairie dogs (Cynomys ludovicianus) are a keystone species that create important grassland habitat for numerous species and serve as prey for predators, but lethal control driven by agricultural conflict has severely reduced their abundance. Novel disease dynamics caused by epizootic plague (Yersinia pestis) within prairie dog colonies have further reduced prairie dog abundances, in turn destabilizing associated wildlife communities. We capitalized on a natural experiment, collecting data on prairie dog distributions, vegetation structure, avian abundance, and mesocarnivore and ungulate occupancy before (2015-2017) and after (2018-2019) a plague event in northeastern Wyoming, USA. Plague decimated black-tailed prairie dog populations in what was then the largest extant colony complex, reducing colony cover in the focal area from more than 10,000 ha to less than 50 ha. We documented dramatic declines in mesocarnivore occupancy and raptor abundance post-plague, with probability of occupancy or abundance approaching zero in species that rely on prairie dogs for a high proportion of their diet (e.g., ferruginous hawk [Buteo regalis], American badger [Taxidea taxus], and swift fox [Vulpes velox]). Following the plague outbreak, abnormally high precipitation in 2018 hastened vegetation recovery from prairie dog disturbance on colonies in which constant herbivory had formerly maintained shortgrass structure necessary for certain colony-associates. As a result, we observed large shifts in avian communities on former prairie dog colonies, including near-disappearance of mountain plovers (Charadrius montanus) and increases in mid-grass associated songbirds (e.g., lark bunting [Calamospiza melanocorys]). Our research highlights how precipitation can interact with disease-induced loss of a keystone species to induce drastic and rapid shifts in wildlife communities. Although grassland taxa have co-evolved with high spatiotemporal variation, fragmentation of the remaining North American rangelands paired with higher-than-historical variability in climate and disease dynamics are likely to destabilize these systems in the future.
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Affiliation(s)
- Courtney J Duchardt
- Department of Natural Resource Ecology and Management, Oklahoma State University, Stillwater, Oklahoma, USA
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, USA
| | | | | | - Jeffrey L Beck
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, USA
| | - Jacob D Hennig
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, USA
| | - David W Pellatz
- Thunder Basin Grassland Prairie Ecosystem Association, Bill, Wyoming, USA
| | - J Derek Scasta
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming, USA
| | | | - Ana D Davidson
- Colorado Natural Heritage Program, Colorado State University, Fort Collins, Colorado, USA
- Department of Fish, Wildlife and Conservation Biology, Colorado State University, Fort Collins, Colorado, USA
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Rodriguez‐Barrera MG, Kühn I, Estrada‐Castillón E, Cord AF. Grassland type and seasonal effects have a bigger influence on plant functional and taxonomical diversity than prairie dog disturbances in semiarid grasslands. Ecol Evol 2022; 12:e9040. [PMID: 35845363 PMCID: PMC9279056 DOI: 10.1002/ece3.9040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 05/20/2022] [Accepted: 06/01/2022] [Indexed: 11/27/2022] Open
Abstract
Prairie dogs (Cynomys sp.) are considered keystone species and ecosystem engineers for their grazing and burrowing activities (summarized here as disturbances). As climate changes and its variability increases, the mechanisms underlying organisms' interactions with their habitat will likely shift. Understanding the mediating role of prairie dog disturbance on vegetation structure, and its interaction with environmental conditions through time, will increase knowledge on the risks and vulnerability of grasslands.Here, we compared how plant taxonomical diversity, functional diversity metrics, and community-weighted trait means (CWM) respond to prairie dog C. mexicanus disturbance across grassland types and seasons (dry and wet) in a priority conservation semiarid grassland of Northeast Mexico.Our findings suggest that functional metrics and CWM analyses responded to interactions between prairie dog disturbance, grassland type and season, whilst species diversity and cover measures were less sensitive to the role of prairie dog disturbance. We found weak evidence that prairie dog disturbance has a negative effect on vegetation structure, except for minimal effects on C4 and graminoid cover, but which depended mainly on season. Grassland type and season explained most of the effects on plant functional and taxonomic diversity as well as CWM traits. Furthermore, we found that leaf area as well as forb and annual cover increased during the wet season, independent of prairie dog disturbance.Our results provide evidence that grassland type and season have a stronger effect than prairie dog disturbance on the vegetation of this short-grass, water-restricted grassland ecosystem. We argue that focusing solely on disturbance and grazing effects is misleading, and attention is needed on the relationships between vegetation and environmental conditions which will be critical to understand semiarid grassland dynamics under future climate change conditions in the region.
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Affiliation(s)
- Maria Gabriela Rodriguez‐Barrera
- Chair of Computational Landscape Ecology, Institute of GeographyTechnische Universität DresdenDresdenGermany
- Department of Computational Landscape EcologyHelmholtz Centre for Environmental Research – UFZLeipzigGermany
| | - Ingolf Kühn
- Department of Community EcologyHelmholtz Centre for Environmental Research – UFZHalleGermany
- Department of Geobotany and Botanic Garden/Institute for BiologyMartin Luther University Halle‐WittenbergHalleGermany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | | | - Anna F. Cord
- Chair of Computational Landscape Ecology, Institute of GeographyTechnische Universität DresdenDresdenGermany
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Lingle S, Breiter C, Schowalter DB, Wilmshurst JF. Prairie dogs, cattle subsidies and alternative prey: seasonal and spatial variation in coyote diet in a temperate grassland. WILDLIFE BIOLOGY 2022. [DOI: 10.1002/wlb3.01048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Susan Lingle
- Dept of Biology, Univ. of Winnipeg Winnipeg MB Canada
| | - C‐Jae Breiter
- Research and Conservation Dept, Assiniboine Park Zoo Winnipeg MB Canada
| | | | - John F. Wilmshurst
- Dept of Geography and Planning, Univ. of Saskatchewan Saskatoon SK Canada
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Augustine DJ, Derner JD. Long‐Term Effects of Black‐Tailed Prairie Dogs on Livestock Grazing Distribution and Mass Gain. J Wildl Manage 2021. [DOI: 10.1002/jwmg.22103] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- David J. Augustine
- Rangeland Resources and Systems Research Unit USDA‐ARS 1701 Centre Ave. Fort Collins CO 80526 USA
| | - Justin D. Derner
- Rangeland Resources and Systems Research Unit USDA‐ARS 8408 Hildreth Road Cheyenne WY 82009 USA
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Kelt DA, Heske EJ, Lambin X, Oli MK, Orrock JL, Ozgul A, Pauli JN, Prugh LR, Sollmann R, Sommer S. Advances in population ecology and species interactions in mammals. J Mammal 2019. [DOI: 10.1093/jmammal/gyz017] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
AbstractThe study of mammals has promoted the development and testing of many ideas in contemporary ecology. Here we address recent developments in foraging and habitat selection, source–sink dynamics, competition (both within and between species), population cycles, predation (including apparent competition), mutualism, and biological invasions. Because mammals are appealing to the public, ecological insight gleaned from the study of mammals has disproportionate potential in educating the public about ecological principles and their application to wise management. Mammals have been central to many computational and statistical developments in recent years, including refinements to traditional approaches and metrics (e.g., capture-recapture) as well as advancements of novel and developing fields (e.g., spatial capture-recapture, occupancy modeling, integrated population models). The study of mammals also poses challenges in terms of fully characterizing dynamics in natural conditions. Ongoing climate change threatens to affect global ecosystems, and mammals provide visible and charismatic subjects for research on local and regional effects of such change as well as predictive modeling of the long-term effects on ecosystem function and stability. Although much remains to be done, the population ecology of mammals continues to be a vibrant and rapidly developing field. We anticipate that the next quarter century will prove as exciting and productive for the study of mammals as has the recent one.
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Affiliation(s)
- Douglas A Kelt
- Department of Wildlife, Fish, & Conservation Biology, University of California, Davis, CA, USA
| | - Edward J Heske
- Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, USA
| | - Xavier Lambin
- School of Biological Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Madan K Oli
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL, USA
| | - John L Orrock
- Department of Integrative Biology, University of Wisconsin, Madison, WI, USA
| | - Arpat Ozgul
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Jonathan N Pauli
- Department of Forest and Wildlife Ecology, University of Wisconsin, Madison, WI, USA
| | - Laura R Prugh
- School of Environmental and Forest Sciences, University of Washington, Seattle, WA, USA
| | - Rahel Sollmann
- Department of Wildlife, Fish, & Conservation Biology, University of California, Davis, CA, USA
| | - Stefan Sommer
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
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Connell LC, Scasta JD, Porensky LM. Prairie dogs and wildfires shape vegetation structure in a sagebrush grassland more than does rest from ungulate grazing. Ecosphere 2018. [DOI: 10.1002/ecs2.2390] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Affiliation(s)
- L. C. Connell
- Department of Ecosystem Science and Management University of Wyoming Ag C 2004, Dept. 3354, 1000 E. University Ave Laramie Wyoming 82071 USA
| | - J. D. Scasta
- Department of Ecosystem Science and Management University of Wyoming Ag C 2004, Dept. 3354, 1000 E. University Ave Laramie Wyoming 82071 USA
| | - L. M. Porensky
- USDA‐ARS Rangeland Resources Research Unit 1701 Centre Avenue Fort Collins Colorado 80526 USA
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Eads DA, Hoogland JL. Precipitation, Climate Change, and Parasitism of Prairie Dogs by Fleas that Transmit Plague. J Parasitol 2017; 103:309-319. [PMID: 28359175 DOI: 10.1645/16-195] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
Fleas (Insecta: Siphonaptera) are hematophagous ectoparasites that can reduce the fitness of vertebrate hosts. Laboratory populations of fleas decline under dry conditions, implying that populations of fleas will also decline when precipitation is scarce under natural conditions. If precipitation and hence vegetative production are reduced, however, then herbivorous hosts might suffer declines in body condition and have weakened defenses against fleas, so that fleas will increase in abundance. We tested these competing hypotheses using information from 23 yr of research on 3 species of colonial prairie dogs in the western United States: Gunnison's prairie dog (Cynomys gunnisoni, 1989-1994), Utah prairie dog (Cynomys parvidens, 1996-2005), and white-tailed prairie dog (Cynomys leucurus, 2006-2012). For all 3 species, flea-counts per individual varied inversely with the number of days in the prior growing season with >10 mm of precipitation, an index of the number of precipitation events that might have caused a substantial, prolonged increase in soil moisture and vegetative production. Flea-counts per Utah prairie dog also varied inversely with cumulative precipitation of the prior growing season. Furthermore, flea-counts per Gunnison's and white-tailed prairie dog varied inversely with cumulative precipitation of the just-completed January and February. These results complement research on black-tailed prairie dog (Cynomys ludovicianus) and might have important ramifications for plague, a bacterial disease transmitted by fleas that devastates populations of prairie dogs. In particular, our results might help to explain why, at some colonies, epizootics of plague, which can kill >95% of prairie dogs, are more likely to occur during or shortly after periods of reduced precipitation. Climate change is projected to increase the frequency of droughts in the grasslands of western North America. If so, then climate change might affect the occurrence of plague epizootics among prairie dogs and other mammalian species that associate with them.
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Affiliation(s)
- David A Eads
- Department of Biology, Colorado State University, Fort Collins, Colorado 80523. Correspondence should be sent to David A. Eads at:
| | - John L Hoogland
- Department of Biology, Colorado State University, Fort Collins, Colorado 80523. Correspondence should be sent to David A. Eads at:
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Ponce-Guevara E, Davidson A, Sierra-Corona R, Ceballos G. Interactive Effects of Black-Tailed Prairie Dogs and Cattle on Shrub Encroachment in a Desert Grassland Ecosystem. PLoS One 2016; 11:e0154748. [PMID: 27144274 PMCID: PMC4856282 DOI: 10.1371/journal.pone.0154748] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2014] [Accepted: 04/18/2016] [Indexed: 11/19/2022] Open
Abstract
The widespread encroachment of woody plants throughout the semi-arid grasslands in North America has largely resulted from overgrazing by domestic livestock, fire suppression, and loss of native large and small mammalian herbivores. Burrowing-herbivorous mammals, such as prairie dogs (Cynomys spp.), help control shrub encroachment through clipping of shrubs and consumption of their seedlings, but little is known about how this important ecological role interacts with and may be influenced by co-existing large herbivores, especially domestic livestock. Here, we established a long-term manipulative experiment using a 2 × 2 factorial design to assess the independent and interactive effects of black-tailed prairie dogs (Cynomys ludovicianus) and cattle (Bos taurus) on honey mesquite (Prosopis glandulosa) abundance and structure. We found that, after five years, mesquite abundance was three to five times greater in plots where prairie dogs were removed compared to plots where they occurred together or alone, respectively. While both prairie dogs and cattle reduced mesquite cover, the effect of prairie dogs on reducing mesquite abundance, cover, and height was significantly greater than that by cattle. Surprisingly, cattle grazing enhanced prairie dog abundance, which, in turn, magnified the effects of prairie dogs on mesquite shrubs. Mesquite canopy cover per hectare was three to five times greater where prairie dogs and cattle were absent compared to where they occurred together or by themselves; whereas, cumulative mesquite height was two times lower on sites where prairie dog and cattle occurred together compared to where they occurred alone or where neither occurred. Data from our experimental study demonstrate that prairie dogs and moderate grazing by cattle can suppress mesquite growth, and, when their populations are properly managed, they may interact synergistically to significantly limit mesquite encroachment in desert grasslands.
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Affiliation(s)
- Eduardo Ponce-Guevara
- Instituto de Ecología, Universidad Nacional Autónoma de México, México City, México
- * E-mail:
| | - Ana Davidson
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York, United States of America
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America
| | | | - Gerardo Ceballos
- Instituto de Ecología, Universidad Nacional Autónoma de México, México City, México
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Brown NL, Peacock MM, Ritchie ME. Genetic variation and population structure in a threatened species, the Utah prairie dog Cynomys parvidens: the use of genetic data to inform conservation actions. Ecol Evol 2016; 6:426-46. [PMID: 26843928 PMCID: PMC4729250 DOI: 10.1002/ece3.1874] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2015] [Accepted: 11/23/2015] [Indexed: 11/11/2022] Open
Abstract
The Utah prairie dog (Cynomys parvidens), listed as threatened under the United States Endangered Species Act, was the subject of an extensive eradication program throughout its range during the 20th century. Eradication campaigns, habitat destruction/fragmentation/conversion, and epizootic outbreaks (e.g., sylvatic plague) have reduced prairie dog numbers from an estimated 95,000 individuals in the 1920s to approximately 14,000 (estimated adult spring count) today. As a result of these anthropogenic actions, the species is now found in small isolated sets of subpopulations. We characterized the levels of genetic diversity and population genetic structure using 10 neutral nuclear microsatellite loci for twelve populations (native and transplanted) representative of the three management designated "recovery units," found in three distinct biogeographic regions, sampled across the species' range. The results indicate (1) low levels of genetic diversity within colonies (H e = 0.109-0.357; H o = 0.106- 0.313), (2) high levels of genetic differentiation among colonies (global F ST = 0.296), (3) very small genetic effective population sizes, and (4) evidence of genetic bottlenecks. The genetic data reveal additional subdivision such that colonies within recovery units do not form single genotype clusters consistent with recovery unit boundaries. Genotype cluster membership support historical gene flow among colonies in the easternmost West Desert Recovery Unit with the westernmost Pausaugunt colonies and among the eastern Pausaugunt colonies and the Awapa Recovery unit to the north. In order to maintain the long-term viability of the species, there needs to be an increased focus on maintaining suitable habitat between groups of existing populations that can act as connective corridors. The location of future translocation sites should be located in areas that will maximize connectivity, leading to maintenance of genetic variation and evolutionary potential.
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Affiliation(s)
- Nathanael L. Brown
- Department of BiologySyracuse University107 College Place, LSCSyracuseNew York13224 Mark Ritchie
- Utah Field OfficeUnited States Fish and Wildlife Service1789 N. Wedgewood LaneCedar CityUtah84721
| | - Mary M. Peacock
- Department of Biology MS314University of Nevada Reno1664 North Virginia StreetReno89557Nevada
| | - Mark E. Ritchie
- Department of BiologySyracuse University107 College Place, LSCSyracuseNew York13224 Mark Ritchie
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