Activity of Type I Methanotrophs Dominates under High Methane Concentration: Methanotrophic Activity in Slurry Surface Crusts as Influenced by Methane, Oxygen, and Inorganic Nitrogen

Pig manure degradation and carbon emission: Measuring and modeling combined aerobic-anaerobic transformations

Greenhouse gas emissions from liquid livestock manure storage significantly contribute to global warming. Accurate farm-scale models are essential for predicting these emissions and evaluating manure management strategies, but they rely on multiple parameters describing carbon loss dynamics. Surface respiration may significantly influence carbon loss and methane emission, yet it is not explicitly included in current models. We conducted experiments to measure pig manure surface respiration rate and its effect on organic matter degradation and methane and carbon dioxide emissions. Manure was incubated for 283 days at 10°C or 20°C under aerobic or anaerobic conditions, while measuring methane and carbon dioxide emission. This was followed by anaerobic digestion at 38°C. Surface respiration reduced the organic matter content, and the effect was temperature dependent. Methane emission was not affected by surface respiration, suggesting that substrate availability was not rate-limiting for methanogenesis. Surface respiration rates were 18.1 ± 3.5 g CO2 m-2 day-1 at 10°C and 37.1 ± 13.1 g CO2 m-2 day-1 at 20°C (mean ± standard deviation) and were consistent with microsensor measurements of oxygen consumption in different manure surfaces. Based on these results, temperature- and surface area-dependent respiration was incorporated in the existing anaerobic biodegradation model (ABM). Simulations showed that surface respiration accounts for 29% of carbon losses in a typical pig house and 8% for outdoor storage. Developing and refining algorithms for diverse carbon transformations, such as surface respiration, is crucial for evaluating the potential for methane emission and identification of variables that control emissions at the farm scale.

Impact of anaerobic digestion on reactive nitrogen gas emissions from dairy slurry storage

Biogas digesters are commonly used to treat animal manure/slurry, and abundant digested slurry is generated during the digestion process. Gas emissions from digested and raw slurry may vary with the change in slurry parameters after digestion, but the mechanism is not well understood. Gas emissions from raw dairy slurry (RS) and digested dairy slurry (BS) during 98 days of storage were investigated in this study to evaluate the effects of anaerobic digestion on reactive nitrogen emissions from slurry storage. Results showed that much higher N₂O and NO emission and lower NH₃ emission was achieved in BS than in RS. The mean gaseous emission of RS and BS accounted for 27.8% ± 6.9% and 17.1% ± 2.3% of the initial TN for NH₃, 0.1% ± 0.1% and 3.5% ± 1.6% of the initial TN for N₂O, and 0.0% ± 0.0% and 0.2% ± 0.0% of the initial TN for NO, respectively. Among all detected N₂O-forming and reducing microbial genes, the abundance of amoA genes was the most closely related to N₂O flux (r = 0.54, p < 0.01). More aerobic conditions occurred in BS, and dissolved oxygen (DO) increased to 0.4-1.6 mg L^-1 after 35 days because the low organic matter of BS resulted in good infiltration of surface air into the slurry. The increased DO stimulated the growth of Nitrosomonas and the increase in amoA gene copies and contributed to the high N₂O and NO emissions in BS through the nitrification process. Vulcanibacillus, Thauera, Castellaniella, and Thermomonas were the major denitrifying bacteria that occurred in BS and caused an incomplete denitrification process, which could be another reason for the increase in N₂O and NO emissions from BS. Our study indicated that anaerobic digestion reduced the organic matter content of the slurry and caused an active microbial environment that facilitated the transformation of slurry N to N₂O in BS storage, thus lowering the NH₃ emission compared with RS storage. Therefore, aside from NH₃, N₂O should also be preferentially mitigated during BS storage because N₂O is a greenhouse gas with high global warming potential.

Response of nitrite-dependent anaerobic methanotrophs to elevated atmospheric CO2 concentration in paddy fields

Nitrite-dependent anaerobic methane oxidation (n-damo) catalyzed by Candidatus Methylomirabilis oxyfera (M. oxyfera)-like bacteria is a new pathway for the regulation of methane emissions from paddy fields. Elevated atmospheric CO₂ concentrations (e[CO₂]) can indirectly affect the structure and function of microbial communities. However, the response of M. oxyfera-like bacteria to e[CO₂] is currently unknown. Here, we investigated the effect of e[CO₂] (ambient CO₂ + 200 ppm) on community composition, abundance, and activity of M. oxyfera-like bacteria at different depths (0-5, 5-10, and 10-20 cm) in paddy fields across multiple rice growth stages (tillering, jointing, and flowering). High-throughput sequencing showed that e[CO₂] had no significant effect on the community composition of M. oxyfera-like bacteria. However, quantitative PCR suggested that the 16S rRNA gene abundance of M. oxyfera-like bacteria increased significantly in soil under e[CO₂], particularly at the tillering stage. Furthermore, ¹³CH₄ tracer experiments showed potential n-damo activity of 0.31-8.91 nmol CO₂ g^-1 (dry soil) d^-1. E[CO₂] significantly stimulated n-damo activity, especially at the jointing and flowering stages. The n-damo activity and abundance of M. oxyfera-like bacteria increased by an average of 90.9% and 50.0%, respectively, under e[CO₂]. Correlation analysis showed that the increase in soil dissolved organic carbon content caused by e[CO₂] had significant effects on the activity and abundance of M. oxyfera-like bacteria. Overall, this study provides the first evidence for a positive response of M. oxyfera-like bacteria to e[CO₂], which may help reduce methane emissions from paddy fields under future climate change conditions.

Dairy and swine manure management - Challenges and perspectives for sustainable treatment technology

Global dairy and swine production growth has increased significantly over the past decades, resulting in higher manure generation in certain areas and environmental concerns. Therefore, manure management is an essential focus for farmers and environmental regulators. Systematic selection of manure management practices can provide environmental benefits, but accounting for local constraints, economics and farming practices are significant challenges. All these factors drive the selection of appropriate manure management systems (MMSs). MMSs are highly varied for their design, partly due to individual farm settings, geography, and the end-use applications of manure. However, the benefits of technological advancements in MMSs provide higher manure treatment efficiency and co-production of value-added products such as recycled water, fiber, sand bedding, and nutrient-rich bio-solids, among others. To achieve higher environmental benefits, advanced manure treatment technologies have to be implemented, which comes with additional costs. So, there is a tradeoff between environmental benefits and cost. With the above prospects, this article reviews: 1) the different treatment technologies used in dairy and swine farms, 2) the life cycle assessment (LCA) method's importance in evaluating various treatment technologies for better environmental returns, and 3) decision support tools (DST) and their significance in MMSs prioritization. We found considerable heterogeneity in the available datasets, mainly on crucial parameters such as water consumption, types and amount of bedding materials, manure removal frequency, manure treatment technologies, and the extent of resource recovery. Thus, suitable environmental impact assessment inventory models are needed to evaluate a more comprehensive range of treatment technologies in MMSs, representing the spatial and farming system heterogeneities. There is also a need for user-friendly DST with adjustable inputs for the functional components of MMSs and evaluation criteria, which can rapidly evaluate the techno-economic feasibility of alternative systems.

Large-scale biogeography and environmental regulation of methanotrophic bacteria across boreal inland waters

Aerobic methanotrophic bacteria (methanotrophs) use methane as a source of carbon and energy, thereby mitigating net methane emissions from natural sources. Methanotrophs represent a widespread and phylogenetically complex guild, yet the biogeography of this functional group and the factors that explain the taxonomic structure of the methanotrophic assemblage are still poorly understood. Here, we used high-throughput sequencing of the 16S rRNA gene of the bacterial community to study the methanotrophic community composition and the environmental factors that influence their distribution and relative abundance in a wide range of freshwater habitats, including lakes, streams and rivers across the boreal landscape. Within one region, soil and soil water samples were additionally taken from the surrounding watersheds in order to cover the full terrestrial-aquatic continuum. The composition of methanotrophic communities across the boreal landscape showed only a modest degree of regional differentiation but a strong structuring along the hydrologic continuum from soil to lake communities, regardless of regions. This pattern along the hydrologic continuum was mostly explained by a clear niche differentiation between type I and type II methanotrophs along environmental gradients in pH, and methane concentrations. Our results suggest very different roles of type I and type II methanotrophs within inland waters, the latter likely having a terrestrial source and reflecting passive transport and dilution along the aquatic networks, but this is an unresolved issue that requires further investigation.