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Shen Y, Yang N, Liu Z, Chen Q, Li Y. Phylogenetic perspective on the relationships and evolutionary history of the Acipenseriformes. Genomics 2020; 112:3511-3517. [PMID: 32105795 DOI: 10.1016/j.ygeno.2020.02.017] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 02/06/2020] [Accepted: 02/21/2020] [Indexed: 11/16/2022]
Abstract
The Acipenseriformes, as one of the earliest extant vertebrates, plays an important role in the evolution of fishes and even the whole vertebrates. Here we collected and analyzed all complete mitochondrial genomes of Acipenseriformes species. Phylogenetic analyses demonstrated that the polytomous branch included Acipenseridae and Polyodontidae formed five clades. The Polyodontidae clade and the Scaphirhynchus clade both were monophyletic group, whereas the Acipenser species and the Huso species both were polyphyletic group. The Bayesian divergence times showed that the origin time for Acipenseriformes was at 318.0 Mya, which was similar to the some previous results of 312.1 Mya, 346.9 Mya and 389.7 Mya. The result was in good consistent with the paleontological data available and the split time of the Pacific and Atlantic Oceans from the Jurassic to the Cretaceous (Laurasia splits in North America and Eurasia). The dN/dS ratios showed the evolutionary rates gradually slow down in five major Acipenseriformes clades from the Clade A (the Pacific sturgeons species) to Clade C (the genus Scaphirhynchus), which was related to the process of geographical formation.
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Affiliation(s)
- Yanjun Shen
- Chongqing Key Laboratory of Animal Biology, School of Life Sciences, Chongqing Normal University, Chongqing 401331, China.
| | - Na Yang
- Chongqing Key Laboratory of Animal Biology, School of Life Sciences, Chongqing Normal University, Chongqing 401331, China
| | - Zhihao Liu
- Chongqing Key Laboratory of Animal Biology, School of Life Sciences, Chongqing Normal University, Chongqing 401331, China
| | - Qiliang Chen
- Chongqing Key Laboratory of Animal Biology, School of Life Sciences, Chongqing Normal University, Chongqing 401331, China
| | - Yingwen Li
- Chongqing Key Laboratory of Animal Biology, School of Life Sciences, Chongqing Normal University, Chongqing 401331, China.
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Mugue N, Barmintseva A, Schepetov D, Shalgimbayeva G, Isbekov K. Complete mitochondrial genomes of the critically endangered Ship sturgeon Acipenser nudiventris from two seas. MITOCHONDRIAL DNA PART B-RESOURCES 2016; 1:195-197. [PMID: 33644342 PMCID: PMC7871871 DOI: 10.1080/23802359.2016.1144103] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Two complete mitochondrial genome sequences of ship sturgeon Acipenser nudiventris from the Caspian Sea and from Balkhash Lake (introduced from the Aral Sea during the last century) were determined by PCR-based sequencing method. The whole mitogenome sequences have been deposited in GenBank under accession numbers KU321568 and KU321569.
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Affiliation(s)
- Nikolai Mugue
- Laboratory of Molecular Genetics, Russian Institut for Fisheries and Oceanography (VNIRO), Moscow, Russian Federation.,Laboratory of Experimental Embryology, Koltzov Institute of Developmental Biology, Moscow, Russian Federation
| | - Anna Barmintseva
- Laboratory of Molecular Genetics, Russian Institut for Fisheries and Oceanography (VNIRO), Moscow, Russian Federation.,Laboratory of Experimental Embryology, Koltzov Institute of Developmental Biology, Moscow, Russian Federation
| | - Dmitry Schepetov
- Laboratory of Molecular Genetics, Russian Institut for Fisheries and Oceanography (VNIRO), Moscow, Russian Federation.,Laboratory of Experimental Embryology, Koltzov Institute of Developmental Biology, Moscow, Russian Federation
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Dong C, Chen B, Xu J, Mahboob S, Al-Ghanim K, Xu P, Sun X. The complete mitochondrial genome of Russian sturgeon (Acipenser gueldenstaedti). Mitochondrial DNA A DNA Mapp Seq Anal 2014; 27:986-7. [PMID: 24938114 DOI: 10.3109/19401736.2014.926517] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Russian sturgeon (Acipenser gueldenstaedti) belongs to the Acipenseriformes Acipenseridae. In this study, we sequenced and characterized the complete mitochondrial genome of A. gueldenstaedti from National Sturgeon Hatchery, Chinese Academy of Fishery Sciences. The circular mitochondrial genome was determined to be 16,595 bp in length including 13 protein-coding genes, 22 transfer RNAs (tRNAs), 2 ribosomal RNAs (rRNAs) and 1 control region. The complete mitochondrial genome of A. gueldenstaedti provides basic genome data for relative studies on Acipenseriformes.
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Affiliation(s)
- Chuanju Dong
- a College of Life Science and Technology, Shanghai Ocean University , Shanghai , China .,b Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences , Beijing , China
| | - Baohua Chen
- a College of Life Science and Technology, Shanghai Ocean University , Shanghai , China .,b Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences , Beijing , China
| | - Jian Xu
- b Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences , Beijing , China
| | - Shahid Mahboob
- c Department of Zoology , College of Science, King Saud University , Riyadh , Saudi Arabia , and.,d Department of Zoology , GC University , Faisalabad , Pakistan
| | - K Al-Ghanim
- c Department of Zoology , College of Science, King Saud University , Riyadh , Saudi Arabia , and
| | - Peng Xu
- b Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences , Beijing , China .,c Department of Zoology , College of Science, King Saud University , Riyadh , Saudi Arabia , and
| | - Xiaowen Sun
- b Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences , Beijing , China
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