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Sousa LPB, Pinto LFB, Cruz VAR, Oliveira GA, Rojas de Oliveira H, Chud TS, Pedrosa VB, Miglior F, Schenkel FS, Brito LF. Genome-wide association and functional genomic analyses for various hoof health traits in North American Holstein cattle. J Dairy Sci 2024; 107:2207-2230. [PMID: 37939841 DOI: 10.3168/jds.2023-23806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Accepted: 10/19/2023] [Indexed: 11/10/2023]
Abstract
Hoof diseases are a major welfare and economic issue in the global dairy cattle production industry, which can be minimized through improved management and breeding practices. Optimal genetic improvement of hoof health could benefit from a deep understanding of the genetic background and biological underpinning of indicators of hoof health. Therefore, the primary objectives of this study were to perform genome-wide association studies, using imputed high-density genetic markers data from North American Holstein cattle, for 8 hoof-related traits: digital dermatitis, sole ulcer, sole hemorrhage, white line lesion, heel horn erosion, interdigital dermatitis, interdigital hyperplasia, and toe ulcer, and a hoof health index. De-regressed estimated breeding values from 25,580 Holstein animals were used as pseudo-phenotypes for the association analyses. The genomic quality control, genotype phasing, and genotype imputation were performed using the PLINK (version 1.9), Eagle (version 2.4.1), and Minimac4 software, respectively. The functional genomic analyses were performed using the GALLO R package and the DAVID platform. We identified 22, 34, 14, 22, 28, 33, 24, 43, and 15 significant markers for digital dermatitis, heel horn erosion, interdigital dermatitis, interdigital hyperplasia, sole hemorrhage, sole ulcer, toe ulcer, white line lesion disease, and the hoof health index, respectively. The significant markers were located across all autosomes, except BTA10, BTA12, BTA20, BTA26, BTA27, and BTA28. Moreover, the genomic regions identified overlap with various previously reported quantitative trait loci for exterior, health, meat and carcass, milk, production, and reproduction traits. The enrichment analyses identified 44 significant gene ontology terms. These enriched genomic regions harbor various candidate genes previously associated with bone development, metabolism, and infectious and immunological diseases. These findings indicate that hoof health traits are highly polygenic and influenced by a wide range of biological processes.
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Affiliation(s)
- Luis Paulo B Sousa
- Department of Animal Sciences, Federal University of Bahia, Salvador, BA, 40170-110, Brazil
| | - Luis Fernando B Pinto
- Department of Animal Sciences, Federal University of Bahia, Salvador, BA, 40170-110, Brazil
| | - Valdecy A R Cruz
- Department of Animal Sciences, Federal University of Bahia, Salvador, BA, 40170-110, Brazil
| | - Gerson A Oliveira
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, N1G 2W1, Canada
| | - Hinayah Rojas de Oliveira
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, N1G 2W1, Canada; Department of Animal Sciences, Purdue University, West Lafayette, IN 47907
| | - Tatiane S Chud
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, N1G 2W1, Canada; PEAK, Madison, WI 53718
| | - Victor B Pedrosa
- Department of Animal Sciences, Purdue University, West Lafayette, IN 47907
| | - Filippo Miglior
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, N1G 2W1, Canada; Lactanet Canada, Guelph, ON, N1K 1E5, Canada
| | - Flávio S Schenkel
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, N1G 2W1, Canada
| | - Luiz F Brito
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, N1G 2W1, Canada; Department of Animal Sciences, Purdue University, West Lafayette, IN 47907.
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Factor Analysis of Genetic Parameters for Body Conformation Traits in Dual-Purpose Simmental Cattle. Animals (Basel) 2022; 12:ani12182433. [PMID: 36139293 PMCID: PMC9495085 DOI: 10.3390/ani12182433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2022] [Revised: 08/17/2022] [Accepted: 09/12/2022] [Indexed: 11/30/2022] Open
Abstract
Simple Summary Body conformation traits are closely related to economically important characteristics and should be considered in cattle breeding programs. A variety of body conformation traits recorded by classifiers can complicate the analysis process. Factor analysis can reduce the number of variables by combining two or more variables into a single factor, which has biological significance. The results of this study could be used by breeders to define conformation indexes and implement genetic assessments for conformation traits in dual-purpose breeds. Abstract In this study, we estimated the genetic parameters for 6 composite traits and 27 body conformation traits of 1016 dual-purpose Simmental cattle reared in northwestern China from 2010 to 2019 using a linear animal mixed model. To integrate these traits, a variety of methods were used as follows: (1) genetic parameters estimates for composite and individual body conformation traits based on the pedigree relationship matrix (A) and combined genomic-pedigree relationship matrix (H); (2) factor analysis to explore the relationships among body conformation traits; and (3) genetic parameters of factor scores estimated using A and H, and the correlations of EBVs of the factor scores and EBVs of the composite traits. Heritability estimates of the composite traits using A and H were low to medium (0.07–0.47). The 24 common latent factors explained 96.13% of the total variance. Among factors with eigenvalues ≥ 1, F1 was mainly related to body frame, muscularity, and rump; F2 was related to feet and legs; F3, F4, F5, and F6 were related to teat placement, teat size, udder size, and udder conformation; and F7 was related to body frame. Single-trait analysis of factor scores yielded heritability estimates that were low to moderate (0.008–0.43 based on A and 0.04–0.43 based on H). Spearman and Pearson correlations, derived from the best linear unbiased prediction analysis of composite traits and factor scores, showed a similar pattern. Thus, incorporating factor analysis into the morphological evaluation to simplify the assessment of body conformation traits may improve the genetics of dual-purpose Simmental cattle.
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Barden M, Li B, Griffiths BE, Anagnostopoulos A, Bedford C, Psifidi A, Banos G, Oikonomou G. Genetic parameters and genome-wide association study of digital cushion thickness in Holstein cows. J Dairy Sci 2022; 105:8237-8256. [PMID: 36028347 PMCID: PMC9511494 DOI: 10.3168/jds.2022-22035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 05/27/2022] [Indexed: 11/19/2022]
Abstract
The digital cushion is linked to the development of claw horn lesions (CHL) in dairy cattle. The objectives of this study were to (1) estimate genetic parameters for digital cushion thickness (DCT), (2) estimate the genetic correlation between DCT and CHL, and (3) identify candidate genes associated with DCT. A cohort of 2,352 Holstein dairy cows were prospectively enrolled on 4 farms and assessed at 4 time points: before calving, immediately after calving, in early lactation, and in late lactation. At each time point, CHL was recorded by veterinary surgeons, and ultrasonographic images of the digital cushion were stored and retrospectively measured at 2 anatomical locations. Animals were genotyped and pedigree details extracted from the national database. Genetic parameters were estimated following a single-step approach implemented in AIREMLF90. Four traits were analyzed: the 2 DCT measurements, sole lesions (sole hemorrhage and sole ulcers), and white line lesions. All traits were analyzed with univariate linear mixed models; bivariate models were fit to estimate the genetic correlation between traits within and between time points. Single-marker and window-based genome-wide association analyses of DCT traits were conducted at each time point; candidate genes were mapped near (<0.2 Mb) or within the genomic markers or windows with the largest effects. Heritability estimates of DCT ranged from 0.14 to 0.44 depending on the location of DCT measurement and assessment time point. The genetic correlation between DCT and sole lesions was generally negative, notably between DCT immediately after calving and sole lesions in early or late lactation, and between DCT in early or late lactation and sole lesion severity in early or late lactation. Digital cushion thickness was not genetically correlated with white line lesions. A polygenic background to DCT was found; genes associated with inflammation, fat metabolism, and bone development were mapped near or within the top markers and windows. The moderate heritability of DCT provides an opportunity to use selective breeding to change DCT in a population. The negative genetic correlation between DCT and sole lesions at different stages of production lends support to current hypotheses of sole lesion pathogenesis. Highlighted candidate genes provide information regarding the complex genetic background of DCT in Holstein cows, but further studies are needed to explore and corroborate these findings.
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Affiliation(s)
- Matthew Barden
- Department of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Liverpool, CH64 7TE, United Kingdom.
| | - Bingjie Li
- Animal & Veterinary Sciences, SRUC, Roslin Institute Building, Easter Bush, Midlothian, EH25 9RG, United Kingdom
| | - Bethany E Griffiths
- Department of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Liverpool, CH64 7TE, United Kingdom
| | - Alkiviadis Anagnostopoulos
- Department of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Liverpool, CH64 7TE, United Kingdom
| | - Cherry Bedford
- Department of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Liverpool, CH64 7TE, United Kingdom
| | - Androniki Psifidi
- Department of Clinical Science and Services, Royal Veterinary College, North Mymms, Hertfordshire, AL9 7TA, United Kingdom
| | - Georgios Banos
- Animal & Veterinary Sciences, SRUC, Roslin Institute Building, Easter Bush, Midlothian, EH25 9RG, United Kingdom
| | - Georgios Oikonomou
- Department of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Liverpool, CH64 7TE, United Kingdom
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Dionizio JAR, Afonso JAB, Soares GSL, Silva BPE, Cajueiro JFDP, Coutinho LT, Costa NA, Souto RJC. Occurrence of foot diseases in cattle attended at the Clínica de Bovinos de Garanhuns: Epidemiological, clinical, therapeutic and economic aspects. CIÊNCIA ANIMAL BRASILEIRA 2022. [DOI: 10.1590/1809-6891v23e-72731e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Abstract The objective was to study the occurrence of foot disorders in cattle treated at the Clínica de Bovinos de Garanhuns, campus of the Universidade Federal Rural de Pernambuco from 1999 to 2021. A retrospective study of the medical records was carried out, with a total of 334 cases, in which 613 lesions were diagnosed. A frequency distribution, with simple mean and standard deviation was performed to evaluate the data. Interdigital dermatitis was more frequent in 12.4% (76/613), double sole in 9.79% (60/613), chronic laminitis in 8.81% (54/613), sole ulcer in 7.83% (48 /613), and interdigital hyperplasia in 7.24% (45/613). Laminitis and its consequences accounted for 45% of the total injuries identified, followed by 36% of injuries of secondary or uncertain cause, and 19% from infectious diseases. The distribution of lesions between the limbs was 68% in the pelvic and 32% in the thoracic limbs. Females, raised in a semi-intensive system, Holstein, with a body score of III, and large size were more affected. Lameness was present in 78% (260/334), while 10% (33/334) did not present lameness. The case fatality and recovery rates were 9% (31/334) and 73% (243/334), respectively. In total, 51% of cases occurred in the rainy season and 49% in the dry season. The main cities of origin were Bom Conselho 22.75% (76/334), Garanhuns 18.86% (63/334), and Brejão 12.57% (42/334). The estimated cost of treatment was US$ 150.13/case. Diseases are probably directly linked to management failure on the property due to the nature of the diagnosed diseases, in addition to the significant cost of the treatment of these animals, with the need for prophylactic measures in order to avoid the economic losses associated with foot diseases.
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Dionizio JAR, Afonso JAB, Soares GSL, Silva BPE, Cajueiro JFDP, Coutinho LT, Costa NA, Souto RJC. Ocorrência de afecções podais em bovinos atendidos pela Clínica de Bovinos de Garanhuns: aspectos epidemiológicos, clínicos, terapêuticos e econômicos. CIÊNCIA ANIMAL BRASILEIRA 2022. [DOI: 10.1590/1809-6891v23e-72731p] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Resumo Objetivou-se estudar a ocorrência das afecções podais em bovinos atendidos na Clínica de Bovinos de Garanhuns, Campus da Universidade Federal Rural de Pernambuco, no intervalo de 1999 a 2021. Realizou-se estudo retrospectivo dos prontuários, com total 334 casos, dos quais foram diagnosticadas 613 lesões digitais. Foi realizada a distribuição de frequência, média simples e desvio padrão para avaliação dos dados. A dermatite interdigital foi a mais frequente, sendo observada em 12,4% (76/613) dos casos, seguida por sola dupla 9,79% (60/613), laminite crônica 8,81% (54/613), úlcera de sola 7,83% (48/613) e a hiperplasia interdigital 7,24% (45/613). A laminite e suas consequências representaram 45% do total de lesões identificadas, acompanhadas por 36% das injúrias de causa secundárias ou incertas e de doenças infecciosas com 19%. A distribuição das lesões entre os membros foi de 68% nos pélvicos e 32% nos torácicos. As fêmeas criadas em sistema semi-intensivo, holandesas, com escore corporal III e porte grande eram mais acometidas. A claudicação estava presente em 78% dos animais, enquanto 10% não claudicavam. As taxas de letalidade e recuperação foram de 9% (31/334) e 73 % (243/334), respectivamente. No período chuvoso foram 51% dos casos e 49% na época seca. Os principais municípios de origem foram Bom Conselho 22,75% (76/334), Garanhuns 18, 86% (63/334) e Brejão 12,57% (42/334). O custo estimado com tratamento foi de US$ 150,13/caso. Provavelmente falhas de manejo nas propriedades foram importantes fatores de risco para as doenças. Sugere-se a implementação de medidas profiláticas para evitar as perdas econômicas associadas às enfermidades podais.
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A Cross-Sectional Epizootiological Study and Risk Assessment of Foot-Related Lesions and Lameness in Intensive Dairy Sheep Farms. Animals (Basel) 2021; 11:ani11061614. [PMID: 34072502 PMCID: PMC8227101 DOI: 10.3390/ani11061614] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 05/26/2021] [Accepted: 05/27/2021] [Indexed: 12/29/2022] Open
Abstract
Simple Summary Foot-related lameness is one of the most significant welfare issues in farm animals. Contrary to dairy cows and meat sheep breeds, epizootiological data on foot-lesions and associated lameness in dairy sheep are scarce. In this study, data were collected from 30 representative intensive dairy sheep farms. Multivariate statistical analysis was used to produce a typology of intensive farming systems which resulted in the assignment of farms in two distinct clusters. Six hundred adult ewes were randomly selected from six flocks (three flocks per cluster) and a cross-sectional study was implemented to investigate the epizootiology and potential risk factors of foot-related lameness, foot-lesions and diseases. Ovine interdigital dermatitis and infectious footrot were the most common infectious foot diseases, while white line disease and hoof wall cracks were the most prevalent non-infectious lesions. Infectious footrot was the main cause of lameness and increased with age, whereas body condition score was associated with increased prevalence of ovine interdigital dermatitis. Comparisons between the clusters regarding foot-related lameness, foot-diseases and lesions at the animal, the limb, and the hoof level are presented, and relevant literature, mechanisms, hypotheses, and challenges of the field are discussed. Abstract Foot-related lameness, foot-diseases and lesions are emerging issues in dairy sheep; however, relevant epizootiological studies are scarce, and risk factors have not been elucidated. The objectives of this cross-sectional study were (i) to address this dearth of knowledge by investigating the epizootiology of lameness-related foot-lesions and diseases, and (ii) to assess the impact of potential risk factors on foot health, in intensive dairy sheep farms. Thirty farms were assigned in two representative clusters using a multivariate statistical analysis. Three farms per cluster and 100 multiparous milking ewes per farm (total n = 600) were selected and enrolled in the study. Foot-related lameness, ovine interdigital dermatitis (OID), infectious footrot (IFR), white line disease, hoof wall cracks, as well as health and welfare traits were recorded. Overall prevalence of foot-related lameness was 9.0% and was primarily associated with IFR; however, additional infectious and non-infectious foot diseases and lesions also contributed. Among infectious foot diseases, OID was the most prevalent (21.3%) followed by IFR (8.0%); WLD and hoof wall cracks were the most prevalent non-infectious foot-lesions (37.7% and 15.3%, respectively). IFR and OID prevalence increased with age (p < 0.05) and BCS (p < 0.01), respectively, suggesting that host-related factors and husbandry practices are important determinants of its occurrence.
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Lai E, Danner AL, Famula TR, Oberbauer AM. Genome-Wide Association Studies Reveal Susceptibility Loci for Noninfectious Claw Lesions in Holstein Dairy Cattle. Front Genet 2021; 12:657375. [PMID: 34122511 PMCID: PMC8194352 DOI: 10.3389/fgene.2021.657375] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Accepted: 04/15/2021] [Indexed: 01/10/2023] Open
Abstract
Sole ulcers (SUs) and white line disease (WLD) are two common noninfectious claw lesions (NICL) that arise due to a compromised horn production and are frequent causes of lameness in dairy cattle, imposing welfare and profitability concerns. Low to moderate heritability estimates of SU and WLD susceptibility indicate that genetic selection could reduce their prevalence. To identify the susceptibility loci for SU, WLD, SU and/or WLD, and any type of noninfectious claw lesion, genome-wide association studies (GWAS) were performed using generalized linear mixed model (GLMM) regression, chunk-based association testing (CBAT), and a random forest (RF) approach. Cows from five commercial dairies in California were classified as controls having no lameness records and ≥6 years old (n = 102) or cases having SU (n = 152), WLD (n = 117), SU and/or WLD (SU + WLD, n = 198), or any type of noninfectious claw lesion (n = 217). The top single nucleotide polymorphisms (SNPs) were defined as those passing the Bonferroni-corrected suggestive and significance thresholds in the GLMM analysis or those that a validated RF model considered important. Effects of the top SNPs were quantified using Bayesian estimation. Linkage disequilibrium (LD) blocks defined by the top SNPs were explored for candidate genes and previously identified, functionally relevant quantitative trait loci. The GLMM and CBAT approaches revealed the same regions of association on BTA8 for SU and BTA13 common to WLD, SU + WLD, and NICL. These SNPs had effects significantly different from zero, and the LD blocks they defined explained a significant amount of phenotypic variance for each dataset (6.1-8.1%, p < 0.05), indicating the small but notable contribution of these regions to susceptibility. These regions contained candidate genes involved in wound healing, skin lesions, bone growth and mineralization, adipose tissue, and keratinization. The LD block defined by the most significant SNP on BTA8 for SU included a SNP previously associated with SU. The RF models were overfitted, indicating that the SNP effects were very small, thereby preventing meaningful interpretation of SNPs and any downstream analyses. These findings suggested that variants associated with various physiological systems may contribute to susceptibility for NICL, demonstrating the complexity of genetic predisposition.
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Affiliation(s)
- Ellen Lai
- Animal Science Department, University of California, Davis, Davis, CA, United States
| | - Alexa L Danner
- Animal Science Department, University of California, Davis, Davis, CA, United States
| | - Thomas R Famula
- Animal Science Department, University of California, Davis, Davis, CA, United States
| | - Anita M Oberbauer
- Animal Science Department, University of California, Davis, Davis, CA, United States
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Cortes JA, Thomas A, Hendrick S, Janzen E, Pajor EA, Orsel K. Risk factors of digital dermatitis in feedlot cattle. Transl Anim Sci 2021; 5:txab075. [PMID: 34278235 PMCID: PMC8280921 DOI: 10.1093/tas/txab075] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Accepted: 05/01/2021] [Indexed: 11/24/2022] Open
Abstract
Digital dermatitis (DD) has been reported in North American feedlots, although risk factors are not well characterized. Our objectives were to analyze: (1) foot and leg conformation and (2) pen hygiene, as potential variables that predispose feedlot cattle to DD. Production parameters in DD-affected cattle were compared with healthy cattle and with those diagnosed with more commonly known infectious lesion foot rot (FR). In total, 2,854 feedlot cattle in 11 pens in 2 feedlots were assessed (bi-weekly pen walks) throughout the feeding cycle. Pen condition was categorized as: “dry,” “mud present but has good bedding,” “more mud than bedding,” and “excessive mud.” Gait scoring was competed and cattle with abnormal gait or evident foot lesions (i.e., DD or FR) were restrained in a cattle chute for a close foot inspection (n=280), including scoring of foot angle and claw set and hind and side views of rear feet and legs. Cumulative incidence of DD (present or absent) and FR was 2.5% (71/2,854) and 11.6% (331/2,854), respectively. Foot and leg conformation was not significantly different between left and right sides or between cattle with (n=71) and without DD (n=209). Lameness was diagnosed in only 22% of cattle with DD. Cattle with DD gained 0.27 kg/d less compared with healthy cattle (mean ± SD: 1.29 ± 0.29 vs. 1.56 ± 0.27, P<0.05) and 0.4 kg/d less compared with FR (1.29 ± 0.29 vs. 1.69 ± 0.25). Presence of DD was not significantly different between pens with “dry” and “mud present but has good bedding,” but for pens with “more mud than bedding” or “excessive mud,” the risk of cattle having DD cases increased significantly [odds ratio (OR)=8.55, confidence interval (CI): 4.0–18.4 and OR=14.1, CI: 5.9–33.8, respectively]. In conclusion, it is important to keep good pen conditions to reduce the risk of DD, which can be managed through proper stocking density and strategic bedding, irrespective of foot and leg conformation.
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Affiliation(s)
- Julian A Cortes
- Faculty of Veterinary Medicine, Department of Production Animal Health, University of Calgary, Calgary, Canada
| | - Anice Thomas
- Faculty of Veterinary Medicine, Department of Production Animal Health, University of Calgary, Calgary, Canada
| | | | - Eugene Janzen
- Faculty of Veterinary Medicine, Department of Production Animal Health, University of Calgary, Calgary, Canada
| | - Ed A Pajor
- Faculty of Veterinary Medicine, Department of Production Animal Health, University of Calgary, Calgary, Canada
| | - Karin Orsel
- Faculty of Veterinary Medicine, Department of Production Animal Health, University of Calgary, Calgary, Canada
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Survey of Risk Factors and Genetic Characterization of Ewe Neck in a World Population of Pura Raza Español Horses. Animals (Basel) 2020; 10:ani10101789. [PMID: 33019702 PMCID: PMC7600715 DOI: 10.3390/ani10101789] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 09/19/2020] [Accepted: 09/27/2020] [Indexed: 11/21/2022] Open
Abstract
Simple Summary Ewe Neck is a common morphological defect of the Pura Raza Español (PRE) population, which seriously affects the horse’s development. In this PRE population (35,267 PRE), a total of 9693 animals (27.12% of total) was Ewe Neck-affected. It has been demonstrated that genetic and risk factors (sex, age, geographical area, coat color, and stud size) are involved, being more prevalent in the males, 4–7 years old, chestnut coat, from small studs (less than 5 mares), and raised in North America. The morphological traits height at chest, length of back, head-neck junction, and bottom neck-body junction and the body indices, head index, and thoracic index were those most closely related with the appearance of this morphological defect. The additional genetic base of Ewe Neck in PRE, which presents low-moderate heritability (h2: 0.23–0.34), shows that the prevalence of this defect could be effectively reduced by genetic selection. Abstract Ewe Neck is a relatively common morphological defect in Pura Raza Español (PRE) horses and other Baroque type horse breeds, which adversely affects the breeding industry; (1) objectives: to establish the within-breed prevalence, possible associated factors, and heritability of Ewe Neck in PRE horses; (2) methods: the database included evaluations of 35,267 PRE horses. The Ewe Neck defect, 16 morphological traits, and 4 body indices were recorded. A Bayesian genetic animal model included the following systematic effects: sex, age, coat color, geographical area of the stud, and birth stud size were used; (3) results: in this PRE population, a total of 27.12% was affected. All the risk factors studied were significantly associated with the Ewe Neck score. The heritability coefficient for Ewe Neck score ranged from 0.23 to 0.34. Morphological traits (height at chest, length of back, head-neck junction, and bottom neck-body junction) and the indices (head and thoracic index) were those most closely related with the appearance of Ewe Neck; (4) conclusions: Ewe Neck is a relatively frequent defect in PRE horses, associated with risk factors and other morphological traits, with a moderate level of heritability. Breeding to select against this condition may therefore be beneficial in this breed.
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Sadiq MB, Ramanoon SZ, Mansor R, Syed-Hussain SS, Shaik Mossadeq WM. Claw Trimming as a Lameness Management Practice and the Association with Welfare and Production in Dairy Cows. Animals (Basel) 2020; 10:E1515. [PMID: 32867064 PMCID: PMC7552284 DOI: 10.3390/ani10091515] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Revised: 07/26/2020] [Accepted: 08/05/2020] [Indexed: 01/31/2023] Open
Abstract
Lameness resulting from claw lesions remains a pressing welfare issue in dairy cows. Claw trimming (CT) is a common practice for prevention and management of clinically lame cows. This review summarizes the results of studies that have investigated various claw trimming (CT) methods, their application in lameness management, and associations with the welfare and production of dairy cows. The papers included in this review fulfilled the following inclusion criteria: published in peer review journal or book chapter within the last 20 years (1999-2019), written in English, and focused on the application of CT for lameness management and the association with either welfare or production variables. Databases used included Google scholar, Web of Science and PubMed. A total of 748 records were assessed and 61 papers were eligible for inclusion and the main objectives and results were used to categorize the results under six topics: CT techniques, association between CT and claw overgrowth/specific claw lesions, timing and frequency of CT, association between CT and behavioral variables, association between CT and physiological parameters, and association between CT and production. The literature findings showed the existence of various CT methods with the common types including the Dutch Five-step, White Line, White Line Atlas, and Kansas techniques. There is data paucity on the efficacy of these techniques in lameness management; however, the slight procedural difference yields varying sole thicknesses and presentations which may influence their prophylactic use. Results regarding the impact of CT on welfare and production were discussed in relation to potential short and long-term benefits. Depending on the lesion type and severity level, CT may induce immediate painful sensation, stress, changes in lying down activities and reduction in milk yield, but the positive impacts were more evident at later stages of lactation following improvement in locomotion score. The majority of the reviewed studies were lacking a detailed description of CT techniques and claw health of the studied animals; thus, reducing the strength of demonstrating CT-related benefits. However, electronic recording of claw health data during every CT visit provides the basis for monitoring hoof health and could assist in curtailing some of these challenges. To elucidate CT-related benefits, certain areas requiring further research were highlighted such as ascertaining the appropriate timing for preventive CT and identifying cows that will benefit more from such intervention during lactation.
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Affiliation(s)
- Mohammed Babatunde Sadiq
- Department of Farm and Exotic Animal Medicine and Surgery, Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia; (M.B.S.); (R.M.)
- Centre of Excellence (Ruminant), Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia;
| | - Siti Zubaidah Ramanoon
- Department of Farm and Exotic Animal Medicine and Surgery, Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia; (M.B.S.); (R.M.)
- Centre of Excellence (Ruminant), Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia;
| | - Rozaihan Mansor
- Department of Farm and Exotic Animal Medicine and Surgery, Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia; (M.B.S.); (R.M.)
- Centre of Excellence (Ruminant), Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia;
| | - Sharifah Salmah Syed-Hussain
- Department of Veterinary Clinical Studies, Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia;
| | - Wan Mastura Shaik Mossadeq
- Centre of Excellence (Ruminant), Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia;
- Department of Veterinary Pre-Clinical Sciences, Faculty of Veterinary Medicine, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia
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Martins B, Mendes A, Silva L, Moreira T, Costa J, Rotta P, Chizzotti M, Marcondes M. Estimating body weight, body condition score, and type traits in dairy cows using three dimensional cameras and manual body measurements. Livest Sci 2020. [DOI: 10.1016/j.livsci.2020.104054] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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López-Paredes J, Goiri I, Atxaerandio R, García-Rodríguez A, Ugarte E, Jiménez-Montero JA, Alenda R, González-Recio O. Mitigation of greenhouse gases in dairy cattle via genetic selection: 1. Genetic parameters of direct methane using noninvasive methods and proxies of methane. J Dairy Sci 2020; 103:7199-7209. [PMID: 32475675 DOI: 10.3168/jds.2019-17597] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Accepted: 03/20/2020] [Indexed: 12/24/2022]
Abstract
Records of methane emissions from 1,501 cows on 14 commercial farms in 4 regions of Spain were collected from May 2018 to June 2019. Methane concentrations (MeC) were measured using a nondispersive infrared methane detector installed within the feed bin of the automatic milking system during 14- to 21-d periods. Rumination time (RT; min/d) was collected using collars with a tag that registered time (minutes) spent eating and ruminating. The means of MeC and methane production (MeP) were 1,254.28 ppm and 182.49 g/d, respectively; mean RT was 473.38 min/d. Variance components for MeC, MeP, and RT were estimated with REML using pedigree and genomic information in a single-step model. Heritabilities for MeC and MeP were 0.11 and 0.12, respectively. Rumination time showed a slightly larger heritability estimate (0.17). The genetic correlation between MeP and MeC was high (>0.95), suggesting that selection on either trait would lead to a positive correlated response on the other. Negative correlations were estimated between RT and MeC (-0.24 ± 0.38) and MeP (-0.43 ± 0.35). Methane concentration and MeP had slightly positive correlations with milk yield (0.17 ± 0.39 and 0.21 ± 0.36), protein percentage (0.08 ± 0.32 and 0.30 ± 0.45), protein yield (0.22 ± 0.41 and 0.31 ± 0.35), fat percentage (0.02 ± 0.40 and 0.27 ± 0.36), and fat yield (0.27 ± 0.28 and 0.29 ± 0.28) from bivariate analyses. Rumination time had positive correlations with milk yield (0.41 ± 0.75) and protein yield (0.26 ± 0.57) and negative correlations with fat yield (-0.45 ± 0.32), protein percentage (-0.15 ± 0.38), and fat percentage (-0.40 ± 0.47). A positive approximated genetic correlation was estimated between fertility and MeC (0.10 ± 0.05) and MeP (0.18 ± 0.05), resulting in slightly higher CH4 production when selecting for better fertility [days open estimated breeding values (EBV) are expressed with mean 100 and SD 10, inversely related to days from calving to conception; that is, greater days open EBV implies better fertility]. Positive correlations were also estimated for stature with MeC and MeP (0.30 ± 0.04 and 0.43 ± 0.04, respectively). Other type traits (chest width, udder depth, angularity, and capacity) were positively correlated with methane traits, possibly because of higher milk yield and higher feed intake from these animals. Rumination time showed positive EBV correlations with production traits and type traits, and negative correlations with somatic cell count and body condition score. Based on the genetic correlations and heritabilities estimated in this study, methane is measurable and heritable, and estimates of genetic correlations suggest no strong opposition to current breeding objectives in Spanish Holsteins.
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Affiliation(s)
- J López-Paredes
- Federación Española de Criadores de Limusín, C/Infanta Mercedes, 31, 28020 Madrid, Spain
| | - I Goiri
- Department of Animal Production, NEIKER-Tecnalia, Granja Modelo de Arkaute, Apdo. 46, 01080 Vitoria-Gasteiz, Spain
| | - R Atxaerandio
- Department of Animal Production, NEIKER-Tecnalia, Granja Modelo de Arkaute, Apdo. 46, 01080 Vitoria-Gasteiz, Spain
| | - A García-Rodríguez
- Department of Animal Production, NEIKER-Tecnalia, Granja Modelo de Arkaute, Apdo. 46, 01080 Vitoria-Gasteiz, Spain
| | - E Ugarte
- Department of Animal Production, NEIKER-Tecnalia, Granja Modelo de Arkaute, Apdo. 46, 01080 Vitoria-Gasteiz, Spain
| | - J A Jiménez-Montero
- Spanish Holstein Association (CONAFE), Ctra. de Andalucía km 23600 Valdemoro, 28340 Madrid, Spain
| | - R Alenda
- Departamento de Producción Agraria, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Ciudad Universitaria s/n, 28040 Madrid, Spain
| | - O González-Recio
- Departamento de Producción Agraria, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Ciudad Universitaria s/n, 28040 Madrid, Spain; Departamento de Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Crta. de la Coruña km 7.5, 28040 Madrid, Spain.
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Olasege BS, Zhang S, Zhao Q, Liu D, Sun H, Wang Q, Ma P, Pan Y. Genetic parameter estimates for body conformation traits using composite index, principal component, and factor analysis. J Dairy Sci 2019; 102:5219-5229. [PMID: 31056333 DOI: 10.3168/jds.2018-15561] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 03/03/2019] [Indexed: 11/19/2022]
Abstract
Information about genetic parameters is population specific and it is crucial for designing animal breeding programs and predicting response to selection. This study was carried out to estimate the genetic parameters for 23 body conformation traits of 45,517 Chinese Holstein reared in Eastern China from 1995 to 2017 with the Bayesian inference method using a linear animal mixed model. The methods to integrate these traits included (1) using the composite index from the Dairy Association of China and (2) applying principal component analysis and factor analysis to explore the relationship between the conformation traits. Estimates of heritability using the composite index were low (0.04; feet and legs) to moderate (0.23; body capacity). Strong genetic correlations were observed between the individual body conformation traits. Both principal components (1 to 7; eigenvalues ≥ 1) and latent factors (1 to 7; eigenvalues ≥ 1) explained 60.37% of total variability. Principal component 1 and factor 1 accounted for the traits that are usually associated with milk production. Moderate to low heritability were estimated through multi-trait analysis for principal components (from 0.07 to 0.21) and latent factors (from 0.07 to 0.23). Genetic correlations among the 2 multivariate techniques are typically lower compared with the one existing among the measured traits. Results from these analyses suggest the possibility of using both principal component analysis and factor analysis in morphological evaluation, simplifying the information given by the body conformation traits into new variables that could be useful for the genetic improvement of the Chinese Holstein population. This information could also be used to avoid analyzing large number of correlated traits, thereby improving precision and reducing computation burdens to analyze large and complex data.
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Affiliation(s)
- B S Olasege
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - S Zhang
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Q Zhao
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - D Liu
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - H Sun
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Q Wang
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China; Shanghai Key Laboratory of Veterinary Biotechnology, Shanghai 200240, PR China
| | - P Ma
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China.
| | - Y Pan
- Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, PR China; Shanghai Key Laboratory of Veterinary Biotechnology, Shanghai 200240, PR China.
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Randall L, Green M, Huxley J. Use of statistical modelling to investigate the pathogenesis of claw horn disruption lesions in dairy cattle. Vet J 2018; 238:41-48. [DOI: 10.1016/j.tvjl.2018.07.002] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Revised: 07/06/2018] [Accepted: 07/13/2018] [Indexed: 10/28/2022]
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Heringstad B, Egger-Danner C, Charfeddine N, Pryce J, Stock K, Kofler J, Sogstad A, Holzhauer M, Fiedler A, Müller K, Nielsen P, Thomas G, Gengler N, de Jong G, Ødegård C, Malchiodi F, Miglior F, Alsaaod M, Cole J. Invited review: Genetics and claw health: Opportunities to enhance claw health by genetic selection. J Dairy Sci 2018. [DOI: 10.3168/jds.2017-13531] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Abstract
This study aimed to evaluate the effect of using different floor types to accommodate growing and finishing beef cattle on lameness. In all, 80 dairy origin bulls were blocked according to live weight and breed into 20 groups, and randomly allocated within groups to one of four treatments. The floor types studied were fully slatted flooring throughout the entire experimental period (CS); fully slatted flooring covered with rubber strips throughout the entire experimental period (RS); fully slatted flooring during the growing period and then moved to a solid floor covered with straw bedding during the finishing period (CS-S) and fully slatted flooring during the growing period and then moved to fully slatted flooring covered with rubber strips during the finishing period (CS-RS). The total duration of the study was 204 days. The first 101 days was defined as the growing period, with the remainder of the study defined as the finishing period. During the growing period, there was a tendency for bulls accommodated on CS to have a higher locomotion score compared with those accommodated on RS (P=0.059). However, floor type had no significant effect on locomotion score during the finishing period. There was also no significant effect of floor type on digital dermatitis during both the growing or finishing period. Floor type had no significant effect on swelling at the leg joints at the end of the finishing period. Bulls accommodated on RS had the least probability of bruised soles during both the growing and finishing period (P<0.01). Growing bulls accommodated on CS had significantly greater front heel height net growth compared with those accommodated on RS (P<0.05). However, bulls accommodated on RS had a tendency to have greater front toe net growth compared with those accommodated on CS (P=0.087). Finishing bulls accommodated on CS-RS had the greatest front toe net growth (P<0.001). Heel height net growth was greatest in bulls accommodated on CS-S (P<0.001). Floor type had no significant effect on mean maximum hoof temperature during the growing period. Finishing bulls accommodated on CS-S had a significantly lower mean maximum hoof temperature compared with those accommodated on any other floor type (P<0.001). The study concluded that rubber flooring is a suitable alternative to fully slatted flooring, reducing the prevalence of bruised soles. Despite greater toe net growth in bulls accommodated on rubber flooring, there was no effect of floor type on locomotion score, suggesting that increased toe net growth does not adversely affect walking ability. In addition, although mean maximum hoof temperature was lowest in bulls accommodated on straw bedding, there was no evidence to suggest this is indicative of improved hoof health.
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Yin T, König S. Genetic parameters for body weight from birth to calving and associations between weights with test-day, health, and female fertility traits. J Dairy Sci 2017; 101:2158-2170. [PMID: 29274962 DOI: 10.3168/jds.2017-13835] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Accepted: 11/01/2017] [Indexed: 11/19/2022]
Abstract
A data set including 57,868 records for calf birth weight (CABW) and 9,462 records for weight at first insemination (IBW) were used for the estimation of direct and maternal genetic effects in Holstein Friesian dairy cattle. Furthermore, CABW and IBW were correlated with test-day production records and health traits in first-lactation cows, and with nonreturn rates in heifers. Health traits considered overall disease categories from the International Committee for Animal Recording diagnosis key, including the general disease status, diarrhea, respiratory diseases, mastitis, claw disorders, female fertility disorders, and metabolic disorders. For single-trait measurements of CABW and IBW, animal models with maternal genetic effects were applied. The direct heritability was 0.47 for CABW and 0.20 for IBW, and the direct genetic correlation between CABW and IBW was 0.31. A moderate maternal heritability (0.19) was identified for CABW, but the maternal genetic effect was close to zero for IBW. The correlation between direct and maternal genetic effects was antagonistic for CABW (-0.39) and for IBW (-0.24). In bivariate animal models, only weak genetic and phenotypic correlations were identified between CABW and IBW with either test-day production or health traits in early lactation. Apart from metabolic disorders, there was a general tendency for increasing disease susceptibilities with increasing CABW. The genetic correlation between IBW and nonreturn rates in heifers after 56 d and after 90 d was slightly positive (0.18), but close to zero when correlating nonreturn rates with CABW. For the longitudinal BW structure from birth to the age of 24 mo, random regression models with the time-dependent covariate "age in months" were applied. Evaluation criteria (Bayesian information criterion and residual variances) suggested Legendre polynomials of order 3 to modeling the longitudinal body weight (BW) structure. Direct heritabilities around birth and insemination dates were slightly larger than estimates for CABW and IBW from the single-trait models, but maternal heritabilities were exactly the same from both models. Genetic correlations between BW were close to 1 for neighboring age classes, but decreased with increasing time spans. The genetic correlation between BW at d 0 (birth date) and at 24 mo was even negative (-0.20). Random regression model estimates confirmed the antagonistic relationship between direct and maternal genetic effects, especially during calfhood. This study based on a large data set in dairy cattle confirmed genetic parameters and (co)variance components for BW as identified in beef cattle populations. However, BW records from an early stage of life were inappropriate early predictors for dairy cow health and productivity.
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Affiliation(s)
- Tong Yin
- Institute of Animal Breeding and Genetics, Justus-Liebig-University Gießen, 35390 Gießen, Germany
| | - Sven König
- Institute of Animal Breeding and Genetics, Justus-Liebig-University Gießen, 35390 Gießen, Germany.
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