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For: Fugeray-Scarbel A, Bastien C, Dupont-Nivet M, Lemarié S. Why and How to Switch to Genomic Selection: Lessons From Plant and Animal Breeding Experience. Front Genet 2021;12:629737. [PMID: 34305998 PMCID: PMC8301370 DOI: 10.3389/fgene.2021.629737] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Accepted: 06/11/2021] [Indexed: 11/25/2022]  Open
Number Cited by Other Article(s)
1
Bartholomé J, Ospina JO, Sandoval M, Espinosa N, Arcos J, Ospina Y, Frouin J, Beartschi C, Ghneim T, Grenier C. Genomic selection for tolerance to aluminum toxicity in a synthetic population of upland rice. PLoS One 2024;19:e0307009. [PMID: 39173048 PMCID: PMC11341055 DOI: 10.1371/journal.pone.0307009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 06/28/2024] [Indexed: 08/24/2024]  Open
2
Inamori M, Kimura T, Mori M, Tarumoto Y, Hattori T, Hayano M, Umeda M, Iwata H. Machine learning for genomic and pedigree prediction in sugarcane. THE PLANT GENOME 2024:e20486. [PMID: 38923818 DOI: 10.1002/tpg2.20486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 05/07/2024] [Accepted: 05/08/2024] [Indexed: 06/28/2024]
3
Brault C, Segura V, Roques M, Lamblin P, Bouckenooghe V, Pouzalgues N, Cunty C, Breil M, Frouin M, Garcin L, Camps L, Ducasse MA, Romieu C, Masson G, Julliard S, Flutre T, Le Cunff L. Enhancing grapevine breeding efficiency through genomic prediction and selection index. G3 (BETHESDA, MD.) 2024;14:jkae038. [PMID: 38401528 PMCID: PMC10989862 DOI: 10.1093/g3journal/jkae038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 02/09/2024] [Accepted: 02/18/2024] [Indexed: 02/26/2024]
4
Martina M, De Rosa V, Magon G, Acquadro A, Barchi L, Barcaccia G, De Paoli E, Vannozzi A, Portis E. Revitalizing agriculture: next-generation genotyping and -omics technologies enabling molecular prediction of resilient traits in the Solanaceae family. FRONTIERS IN PLANT SCIENCE 2024;15:1278760. [PMID: 38375087 PMCID: PMC10875072 DOI: 10.3389/fpls.2024.1278760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 01/22/2024] [Indexed: 02/21/2024]
5
Khanna A, Anumalla M, Ramos J, Cruz MTS, Catolos M, Sajise AG, Gregorio G, Dixit S, Ali J, Islam MR, Singh VK, Rahman MA, Khatun H, Pisano DJ, Bhosale S, Hussain W. Genetic gains in IRRI's rice salinity breeding and elite panel development as a future breeding resource. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2024;137:37. [PMID: 38294550 PMCID: PMC10830834 DOI: 10.1007/s00122-024-04545-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 01/05/2024] [Indexed: 02/01/2024]
6
de Verdal H, Baertschi C, Frouin J, Quintero C, Ospina Y, Alvarez MF, Cao TV, Bartholomé J, Grenier C. Optimization of Multi-Generation Multi-location Genomic Prediction Models for Recurrent Genomic Selection in an Upland Rice Population. RICE (NEW YORK, N.Y.) 2023;16:43. [PMID: 37758969 PMCID: PMC10533757 DOI: 10.1186/s12284-023-00661-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 09/19/2023] [Indexed: 09/29/2023]
7
David I, Ricard A. An improved transmissibility model to detect transgenerational transmitted environmental effects. Genet Sel Evol 2023;55:66. [PMID: 37735633 PMCID: PMC10512618 DOI: 10.1186/s12711-023-00833-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 08/24/2023] [Indexed: 09/23/2023]  Open
8
Sinha D, Maurya AK, Abdi G, Majeed M, Agarwal R, Mukherjee R, Ganguly S, Aziz R, Bhatia M, Majgaonkar A, Seal S, Das M, Banerjee S, Chowdhury S, Adeyemi SB, Chen JT. Integrated Genomic Selection for Accelerating Breeding Programs of Climate-Smart Cereals. Genes (Basel) 2023;14:1484. [PMID: 37510388 PMCID: PMC10380062 DOI: 10.3390/genes14071484] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 07/14/2023] [Accepted: 07/18/2023] [Indexed: 07/30/2023]  Open
9
Großkinsky DK, Faure JD, Gibon Y, Haslam RP, Usadel B, Zanetti F, Jonak C. The potential of integrative phenomics to harness underutilized crops for improving stress resilience. FRONTIERS IN PLANT SCIENCE 2023;14:1216337. [PMID: 37409292 PMCID: PMC10318926 DOI: 10.3389/fpls.2023.1216337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Accepted: 06/08/2023] [Indexed: 07/07/2023]
10
John M, Haselbeck F, Dass R, Malisi C, Ricca P, Dreischer C, Schultheiss SJ, Grimm DG. A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species. FRONTIERS IN PLANT SCIENCE 2022;13:932512. [PMID: 36407627 PMCID: PMC9673477 DOI: 10.3389/fpls.2022.932512] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 07/25/2022] [Indexed: 06/16/2023]
11
Genomic Prediction Accuracy of Stripe Rust in Six Spring Wheat Populations by Modeling Genotype by Environment Interaction. PLANTS 2022;11:plants11131736. [PMID: 35807690 PMCID: PMC9269065 DOI: 10.3390/plants11131736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 06/27/2022] [Accepted: 06/28/2022] [Indexed: 11/17/2022]
12
Robert P, Auzanneau J, Goudemand E, Oury FX, Rolland B, Heumez E, Bouchet S, Le Gouis J, Rincent R. Phenomic selection in wheat breeding: identification and optimisation of factors influencing prediction accuracy and comparison to genomic selection. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2022;135:895-914. [PMID: 34988629 DOI: 10.1007/s00122-021-04005-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 11/23/2021] [Indexed: 05/15/2023]
13
Fugeray-Scarbel A, Ben-Sadoun S, Bouchet S, Lemarié S. Analyzing the Economic Effectiveness of Genomic Selection Relative to Conventional Breeding Approaches. Methods Mol Biol 2022;2467:619-644. [PMID: 35451792 DOI: 10.1007/978-1-0716-2205-6_22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
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