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Gadd GM, Fomina M, Pinzari F. Fungal biodeterioration and preservation of cultural heritage, artwork, and historical artifacts: extremophily and adaptation. Microbiol Mol Biol Rev 2024; 88:e0020022. [PMID: 38179930 PMCID: PMC10966957 DOI: 10.1128/mmbr.00200-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 09/11/2023] [Indexed: 01/06/2024] Open
Abstract
SUMMARYFungi are ubiquitous and important biosphere inhabitants, and their abilities to decompose, degrade, and otherwise transform a massive range of organic and inorganic substances, including plant organic matter, rocks, and minerals, underpin their major significance as biodeteriogens in the built environment and of cultural heritage. Fungi are often the most obvious agents of cultural heritage biodeterioration with effects ranging from discoloration, staining, and biofouling to destruction of building components, historical artifacts, and artwork. Sporulation, morphological adaptations, and the explorative penetrative lifestyle of filamentous fungi enable efficient dispersal and colonization of solid substrates, while many species are able to withstand environmental stress factors such as desiccation, ultra-violet radiation, salinity, and potentially toxic organic and inorganic substances. Many can grow under nutrient-limited conditions, and many produce resistant cell forms that can survive through long periods of adverse conditions. The fungal lifestyle and chemoorganotrophic metabolism therefore enable adaptation and success in the frequently encountered extremophilic conditions that are associated with indoor and outdoor cultural heritage. Apart from free-living fungi, lichens are a fungal growth form and ubiquitous pioneer colonizers and biodeteriogens of outdoor materials, especially stone- and mineral-based building components. This article surveys the roles and significance of fungi in the biodeterioration of cultural heritage, with reference to the mechanisms involved and in relation to the range of substances encountered, as well as the methods by which fungal biodeterioration can be assessed and combated, and how certain fungal processes may be utilized in bioprotection.
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Affiliation(s)
- Geoffrey Michael Gadd
- Geomicrobiology Group, School of Life Sciences, University of Dundee, Dundee, United Kingdom
- State Key Laboratory of Heavy Oil Processing, Beijing Key Laboratory of Oil and Gas Pollution Control, College of Chemical Engineering and Environment, China University of Petroleum, Beijing, China
| | - Marina Fomina
- Zabolotny Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, Kyiv, Ukraine
- National Reserve “Sophia of Kyiv”, Kyiv, Ukraine
| | - Flavia Pinzari
- Institute for Biological Systems (ISB), Council of National Research of Italy (CNR), Monterotondo (RM), Italy
- Natural History Museum, London, United Kingdom
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De la Rosa-García S, Sierra-Fernández A, Solís CG, García NS, Quintana P, Gómez-Cornelio S, Fort R. Fungal community dynamics on limestone at the Chichén Itzá archaeological site in Mexico driven by protective treatments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167563. [PMID: 37802337 DOI: 10.1016/j.scitotenv.2023.167563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 09/26/2023] [Accepted: 10/01/2023] [Indexed: 10/08/2023]
Abstract
Microorganisms naturally colonize rock-based materials in outdoor environments, thereby contributing to their degradation. Fungi, especially in tropical environments with abundant water and favorable temperatures, play a significant role in biodegradation. However, many aspects of the microorganism-stone interaction, including fungal colonization dynamics and the impact of treatment applications, remain unclear. This study conducted a four-year in-situ evaluation of fungal community dynamics on limestone surfaces in the Temple of the Warriors at the Chichén Itzá archaeological site in Mexico, focusing on cleaning and treatment using nanoparticles (NPs). These NPs included zinc oxide (ZnO) and CaZn2(OH)6·2H2O (CZ)-based NPs synthesized via sol-gel (CZ-SG) and mechanochemical methods (CZ-MC), as well as CZ/Ca(OH)2-based products (CZ:Ca-SG). The microbial colonization cover was assessed using colorimetric measurements, and the surface was sampled for fungal community isolation and identification. The results demonstrated significant impacts of cleaning and nanomaterial applications on cultivable fungal communities (melanized filamentous, hyaline, and microcolonial fungi), altering composition, dynamics, and stone surface coloration. In particular, ZnO NPs caused 50 % decline in fungal species and individuals, whereas CZ:Ca-SG NPs displaced most species, indicating effective inhibition of the cultivable fungal community. Microcolonial fungi (MCF), known for their tolerance to withstand harsh environmental conditions, were the only fungal group found in the CZ:Ca-SG treatment. In contrast, CZ-SG and CZ-MC increased the abundance of melanized species, resulting in darkening and reduced color intensity. This study highlights the importance of microcolonial fungi that are tolerant to cleaning and coating procedures in the preservation of stone cultural heritage. These findings enhance our understanding of fungal colonization dynamics following treatment and provide valuable insights into the challenges associated with preserving stone materials in tropical environments.
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Affiliation(s)
- Susana De la Rosa-García
- Laboratorio de Microbiología Aplicada, División Académica de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco, 0.5 km Carretera Villahermosa-Cárdenas, Villahermosa 86000, Tabasco, Mexico.
| | | | - Claudia García Solís
- Sección de Conservación y Restauración, Centro INAH-Yucatán, Calle 10 No. 310-A, Col. Gonzalo Guerrero, 97310 Mérida, Yucatán, Mexico
| | - Neftalí Soberanes García
- Universidad Politécnica del Centro, Km. 22.5 Carretera Federal Villahermosa-Teapa, Tumbulushal, Centro, 86290 Villahermosa, Tabasco, Mexico
| | - Patricia Quintana
- Laboratorio Nacional de Nano y Biomateriales, Departamento de Física Aplicada, CINVESTAV-IPN, A.P. 73, Ciordemex, 973109 Mérida, Yucatán, Mexico
| | - Sergio Gómez-Cornelio
- Universidad Politécnica del Centro, Km. 22.5 Carretera Federal Villahermosa-Teapa, Tumbulushal, Centro, 86290 Villahermosa, Tabasco, Mexico; Laboratorio de Nanotecnología-CICTAT, División Académica de Ingeniería y Arquitectura, Universidad Juárez Autónoma de Tabasco, Carr. Cunduacán-Jalpa de Méndez, Km 1, Cunduacán, Tabasco 86690, Mexico
| | - Rafael Fort
- Instituteo de Geociencias (CSIC, UCM), Severo Ochoa 7, CP 28040 Madrid, Spain.
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Agrawal S, Khumlianlal J, Devi SI. Uncovering the Fungal Diversity and Biodeterioration Phenomenon on Archaeological Carvings of the Badami Cave Temples: A Microcosm Study. Life (Basel) 2023; 14:28. [PMID: 38255644 PMCID: PMC10820822 DOI: 10.3390/life14010028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 12/20/2023] [Accepted: 12/22/2023] [Indexed: 01/24/2024] Open
Abstract
The Badami Caves are a significant example of ancient Indian rock-cut architecture, dating back to the 6th century. These caves are situated in the Malaprabha River valley and are part of the candidate UNESCO World Heritage Site known as the "Evolution of Temple Architecture-Aihole-Badami-Pattadakal", which is considered to be the cradle of temple architecture in India. Our study aimed to investigate the diversity, distribution, and biodeterioration phenomena of the fungal communities present on the cave surfaces. The study also conducted a comprehensive analysis of fungal biodeterioration on the cave carvings. Utilizing specialized techniques, the dissolution of calcite, alterations in pH levels, and biomineralization capabilities of isolated fungal strains were monitored. Additionally, this study analyzed fungal acid production using high-performance liquid chromatography (HPLC). Our findings revealed that the major genera of fungi found on the cave surfaces included Acremonium, Curvularia, Cladosporium, Penicillium, and Aspergillus. These isolated fungi were observed to produce acids, leading to the dissolution of calcium carbonate and subsequent decrease in pH values. Notably, the dominant genus responsible for acid production and the promotion of biomineralization was Aspergillus. These discoveries provide valuable insight into the ecology and functions of fungi inhabiting stone surfaces, contributing to our understanding of how to preserve and protect sculptures from biodeterioration.
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Affiliation(s)
- Shivankar Agrawal
- Department of Phytochemistry, ICMR-National Institute of Traditional Medicine, Belagavi 590010, India
| | - Joshua Khumlianlal
- Institute of Bioresources and Sustainable Development (Department of Biotechnology, Government of India), Imphal 795001, India
| | - Sarangthem Indira Devi
- Institute of Bioresources and Sustainable Development (Department of Biotechnology, Government of India), Imphal 795001, India
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Rizk SM, Magdy M. An indigenous inland genotype of the black yeast Hortaea werneckii inhabiting the great pyramid of Giza, Egypt. Front Microbiol 2022; 13:997495. [PMID: 36225378 PMCID: PMC9549061 DOI: 10.3389/fmicb.2022.997495] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 08/31/2022] [Indexed: 11/13/2022] Open
Abstract
Within the context of cultural heritage conservation, the biological study of tangible archeological sites is an important task to extend their existence and strengthen the transmission of their cultural value to future generations. In Egypt, a hyper-arid region, a microcolonial fungus with inky black growth was observed on a stone surface in the royal corridor of the Great Pyramid of Giza (King Khufu’s pyramid). The isolate was studied and characterized by microscopic morphometric measurements, evaluation of enzymatic activities, and genotyping techniques. The isolate was identified as Hortaea werneckii, a pleomorphic black yeast that naturally inhabits hypersaline environments and infects human skin. It has been reported from humid temperate, subtropical, and tropical zones, mainly from marine habitats and adjacent areas, and is associated with marine life. Since it was observed in an unusual habitat, it raises the question of its type and origin, whether environmental or clinical. The Egyptian Hortaea werneckii GPS5 isolate was profiled and characterized by adaptive extremophilic tolerance to arid salt stress, low portability to infect human skin, and the capability of solubilizing calcite; besides it was phylogenetically clustered with previous recorded environmental accessions. A profile that matches the biodeterioration fungal agents known as rock-inhabiting fungi, a potential threat to cultural heritage sites that requires attention and prevention plans.
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Wu F, Zhang Y, Gu JD, He D, Zhang G, Liu X, Guo Q, Cui H, Zhao J, Feng H. Community assembly, potential functions and interactions between fungi and microalgae associated with biodeterioration of sandstone at the Beishiku Temple in Northwest China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 835:155372. [PMID: 35489512 DOI: 10.1016/j.scitotenv.2022.155372] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 04/12/2022] [Accepted: 04/14/2022] [Indexed: 05/11/2023]
Abstract
Fungi, cyanobacteria and algae are specific microbial groups associated with the deterioration and safety of stone monuments. In this study, high-throughput sequencing analysis was used to investigate the diversity, distributions, ecological functions, and interaction patterns of both the fungal and microalgal (including cyanobacteria and algae) communities on sandstone in the Beishiku Temple, located on the ancient Silk Road. The results showed that the core phyla of fungi were affiliated with unclassified Lecanoromycetes, Engyodontium, Knufia, Epicoccum, Endocarpon, and Cladosporium of Ascomycota whereas the phyla of microalgae were dominated by prokaryotic Cyanobacteria and eukaryotic Chlorophyta. The environmental factors of temperature, relative humidity, and light intensity were monitored simultaneously. The structure of the microbial communities was much more strongly shaped by soluble Cl-, Na+, NO3- ions than by the light intensity, moisture content or temperature, especially for the weathered sandstone located outside the caves. The co-occurrence network analysis suggested that a more stable community structure was evident outside the caves than inside. The stronger positive connections and coexistence patterns that were detected indicate a strong adaptability of fungi and microalgae to the distinct oligotrophic microhabitats on sandstone. The metacommunity co-occurrence network exhibited the ecological predominance of fungi, and most of the functional fungi in the biofilms outside the caves belonged to the Lichenized group, based on the FUNGuild prediction. These findings highlight the ecology and functions of stone-inhabiting microorganisms to further advance the current understanding and knowledge of sandstone biodeterioration for protection and management.
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Affiliation(s)
- Fasi Wu
- MOE Key Laboratory of Cell Activities and Stress Adaptations, Center of Grassland Microbiome, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000, PR China; National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang, Gansu 736200, PR China
| | - Yong Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, Center of Grassland Microbiome, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000, PR China
| | - Ji-Dong Gu
- Environmental Science and Engineering Group, Guangdong Technion - Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, PR China; Guangdong Provincial Key Laboratory of Materials and Technologies for Energy Conversion, Guangdong Technion - Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, PR China
| | - Dongpeng He
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang, Gansu 736200, PR China
| | - Gaosen Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, Gansu 730000, PR China
| | - Xiaobo Liu
- Environmental Science and Engineering Group, Guangdong Technion - Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, PR China; School of Environmental and Biological Engineering, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing 210094, Jiangsu, PR China
| | - Qinglin Guo
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang, Gansu 736200, PR China
| | - Huiping Cui
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang, Gansu 736200, PR China
| | - Jianhua Zhao
- Shanghai Majorbio Bio-pharm Technology Co., Ltd., Shanghai 200120, PR China
| | - Huyuan Feng
- MOE Key Laboratory of Cell Activities and Stress Adaptations, Center of Grassland Microbiome, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000, PR China.
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Black Fungi on Stone-Built Heritage: Current Knowledge and Future Outlook. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12083969] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Black fungi are considered as one of the main group of microorganisms responsible for the biodeterioration of stone cultural heritage artifacts. In this paper, we provide a critical analysis and review of more than 30 years of studies on black fungi isolated from stone-built heritage from 1990 to date. More than 109 papers concerning the fungal biodeterioration activity of stone were analysed. The main findings were a check list of the black fungal taxa involved in the biodeterioration of stone-built heritage, with a particular reference to meristematic black fungi, the main biodeterioration pattern attributed to them, and the methods of study including the new molecular advances. A particular focus was to discuss the current approaches to control black fungi from stone-built heritage and future perspectives. Black fungi are notoriously hard to remove or mitigate, so new methods of study and of control are needed, but it is also important to combine classical methods with new approaches to improve current knowledge to implement future conservation strategies.
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Identification of Microorganisms Dwelling on the 19th Century Lanna Mural Paintings from Northern Thailand Using Culture-Dependent and -Independent Approaches. BIOLOGY 2022; 11:biology11020228. [PMID: 35205094 PMCID: PMC8869426 DOI: 10.3390/biology11020228] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 01/24/2022] [Accepted: 01/27/2022] [Indexed: 01/04/2023]
Abstract
Simple Summary In this study, we compared microbial communities in Lanna mural paintings in temples with different numbers of visitors using culture-dependent and culture independent approaches. The results showed that microorganisms could damage the colors that are used on murals. The process of degradation involved the production of organic acids and formation of the calcium crystal. Furthermore, we found that the site with higher number of visitors is associated with microbial contamination from humans while the site with lower number of visitors had higher saprotroph population. Further research into these microorganisms, their activities and functional roles may provide crucial information to aid the preservation of mural paintings. Abstract Lanna painting is a unique type of painting in many temples in the Northern Thai region. Similar to most mural paintings, they usually decay over time partly due to the activity of microbes. This study aimed to investigate the microorganisms from two Lanna masterpiece paintings in two temples that differ in the numbers of visitors using both culture-dependent and -independent approaches. The microorganisms isolated from the murals were also tested for the biodeterioration activities including discoloration, acid production and calcium precipitation. Most microorganisms extracted from the paintings were able to discolor the paints, but only fungi were able to discolor, produce acids and precipitate calcium. The microorganism communities, diversity and functional prediction were also investigated using the culture-independent method. The diversity of microorganisms and functional prediction were different between the two temples. Gammaproteobacteria was the predominant group of bacteria in both temples. However, the fungal communities were different between the two temples as Aspergillus was the most abundant genus in the site with higher number of visitors [Buak Krok Luang temple (BK)]. Conversely, mural paintings at Tha Kham temple (TK) were dominated by the Neodevriesia genera. We noticed that a high number of visitors (Buak Krok Luang) was correlated with microbial contamination from humans while the microbial community at Tha Kham temple had a higher proportion of saprotrophs. These results could be applied to formulate a strategy to mitigate the amount of tourists as well as manage microorganism to slow down the biodeterioration process.
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Ahmed EAE, Mohamed RM. Bacterial Deterioration in the Limestone Minaret of Prince Muhammad and Suggested Treatment Methods, Akhmim, Egypt. GEOMATERIALS 2022; 12:37-58. [DOI: 10.4236/gm.2022.123004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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Abstract
Cultural heritage buildings of stone construction require careful restorative actions to maintain them as close to the original condition as possible. This includes consolidation and cleaning of the structure. Traditional consolidants may have poor performance due to structural drawbacks such as low adhesion, poor penetration and flexibility. The requirement for organic consolidants to be dissolved in volatile organic compounds may pose environmental and human health risks. Traditional conservation treatments can be replaced by more environmentally acceptable, biologically-based, measures, including bioconsolidation using whole bacterial cells or cell biomolecules; the latter include plant or microbial biopolymers and bacterial cell walls. Biocleaning can employ microorganisms or their extracted enzymes to remove inorganic and organic surface deposits such as sulfate crusts, animal glues, biofilms and felt tip marker graffiti. This review seeks to provide updated information on the innovative bioconservation treatments that have been or are being developed.
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Current Knowledge on the Fungal Degradation Abilities Profiled through Biodeteriorative Plate Essays. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11094196] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Fungi are known to contribute to the development of drastic biodeterioration of historical and valuable cultural heritage materials. Understandably, studies in this area are increasingly reliant on modern molecular biology techniques due to the enormous benefits they offer. However, classical culture dependent methodologies still offer the advantage of allowing fungal species biodeteriorative profiles to be studied in great detail. Both the essays available and the results concerning distinct fungal species biodeteriorative profiles obtained by amended plate essays, remain scattered and in need of a deep summarization. As such, the present work attempts to provide an overview of available options for this profiling, while also providing a summary of currently known fungal species putative biodeteriorative abilities solely obtained by the application of these methodologies. Consequently, this work also provides a series of checklists that can be helpful to microbiologists, restorers and conservation workers when attempting to safeguard cultural heritage materials worldwide from biodeterioration.
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Taleski V, Dimkić I, Boev B, Boev I, Živković S, Stanković S. Bacterial and fungal diversity in the lorandite (TlAsS2) mine 'Allchar' in the Republic of North Macedonia. FEMS Microbiol Ecol 2021; 96:5891424. [PMID: 32785579 DOI: 10.1093/femsec/fiaa155] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 08/10/2020] [Indexed: 01/04/2023] Open
Abstract
The Allchar mineral mine is one of the oldest arsenic-antimony mines in the Republic of North Macedonia. The mine is a well-known reservoir of the worldwide purest source of the thallium-bearing mineral, lorandite (TlAsS2). The current study evaluated the bacterial and fungal diversity of three As- and Tl-contaminated sites in Allchar mineral mine. We used a combination of high-throughput sequencing and bioinformatic analyses. Trace metal content was detected using inductively coupled plasma optical emission spectrometry. Our analysis showed the presence of 25 elements and confirmed a high concentration of As and Tl. Alpha diversity indices suggested a high diversity and evenness of bacterial and fungal communities. Bacterial phyla that dominated the environment were Bacteroidetes, Acidobacteria, Planctomycetes, Actinobacteria and Verrucomicrobia. Looking at the genus level, we found the following groups of bacteria: Chryseolinea, Opitutus, Flavobacterium, Pseudomonas, Terrimonas, Sphingomonas and Reyranella. For the fungi genera, we report Tetracladium sp., Coprinellus micaceus, Coprinus sp. from Ascomycota and Basidiomycota phyla in all sites. We also observed a high abundance of the fungal species Pilidium sp., Dendroclathra lignicola, Rosellinia desmazieri, Hypomyces rosellus and Coprinellus disseminatus. This study is the first to identify specific As- and Tl-tolerant fungal (Pilidium sp., Cladophialophora sp., Neobulgaria sp. and Mycena acicula) and bacterial (Trichococcus, Devosia, Litorilinea and Gimesia) genera from Allchar mine, suggesting bioremediation and industrial potential.
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Affiliation(s)
- Vaso Taleski
- Goce Delčev University of Štip, "Krste Misirkov" 10-A, P.O. box 201, Stip, North Macedonia
| | - Ivica Dimkić
- University of Belgrade, Faculty of Biology, Studentski trg 16, P.O. box 11 000 Belgrade, Serbia
| | - Blazo Boev
- Goce Delčev University of Štip, "Krste Misirkov" 10-A, P.O. box 201, Stip, North Macedonia
| | - Ivan Boev
- Goce Delčev University of Štip, "Krste Misirkov" 10-A, P.O. box 201, Stip, North Macedonia
| | - Sanja Živković
- University of Belgrade, Institute of Nuclear Sciences Vinca, Mike Petrovica Alasa 12-14, P.O. box 11 351, Vinca, Belgrade, Serbia
| | - Slaviša Stanković
- University of Belgrade, Faculty of Biology, Studentski trg 16, P.O. box 11 000 Belgrade, Serbia
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Jung P, Baumann K, Emrich D, Springer A, Felde VJ, Dultz S, Baum C, Frank M, Büdel B, Leinweber P. Lichens Bite the Dust - A Bioweathering Scenario in the Atacama Desert. iScience 2020; 23:101647. [PMID: 33103085 PMCID: PMC7578742 DOI: 10.1016/j.isci.2020.101647] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 09/25/2020] [Accepted: 10/01/2020] [Indexed: 11/23/2022] Open
Abstract
Bioweathering mediated by microorganisms plays a significant role in biogeochemical cycles on global scales over geological timescales. Single processes induced by specific taxa have been described but could rarely be demonstrated for complex communities that dominate whole landscapes. The recently discovered grit crust of the coastal Atacama Desert, which is a transitional community between a cryptogamic ground cover and a rock-bound lithic assemblage, offers the unique chance to elucidate various bioweathering processes that occur simultaneously. Here, we present a bioweathering scenario of this biocenosis including processes such as penetration of the lithomatrix, microbial responses to wet-dry cycles, alkalinolysis, enzyme activity, and mineral re-localization. Frequently occurring fog, for example, led to a volume increase of microorganisms and the lithomatrix. This, together with pH shifts and dust accumulation, consequently results in biophysical breakdown and the formation of a terrestrial protopedon, an initial stage of pedogenesis fueled by the grit crust.
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Affiliation(s)
- Patrick Jung
- Applied Logistics and Polymer Sciences, University of Applied Sciences Kaiserslautern, Carl-Schurz-Straße 10-16, 66953 Pirmasens, Germany
| | - Karen Baumann
- Faculty of Agricultural and Environmental Science, Soil Science, University of Rostock, Justus-von-Liebig-Weg 6, 18051 Rostock, Germany
| | - Dina Emrich
- University of Freiburg, Faculty of Environment and Natural Resources, Chair of Applied Vegetation Ecology, Tennenbacher Str. 4, 79106 Freiburg, Germany
| | - Armin Springer
- Medical Biology and Electron Microscopy Centre, University Medicine Rostock, Strempelstraße 14, 18057 Rostock, Germany
- Department Life, Light and Matter, University of Rostock, 18051 Rostock, Germany
| | - Vincent J.M.N.L. Felde
- Department of Soil Science, Faculty of Organic Agricultural Sciences, University of Kassel, Nordbahnhofstr. 1a, 37213 Witzenhausen, Germany
| | - Stefan Dultz
- Institute of Soil Science, Leibniz Universität Hannover, Herrenhäuser Str. 2, 30419 Hannover, Germany
| | - Christel Baum
- Faculty of Agricultural and Environmental Science, Soil Science, University of Rostock, Justus-von-Liebig-Weg 6, 18051 Rostock, Germany
| | - Marcus Frank
- Medical Biology and Electron Microscopy Centre, University Medicine Rostock, Strempelstraße 14, 18057 Rostock, Germany
- Department Life, Light and Matter, University of Rostock, 18051 Rostock, Germany
| | - Burkhard Büdel
- Plant Ecology and Systematics, University of Kaiserslautern, Erwin-Schrödinger-Straße, 67663 Kaiserslautern, Germany
| | - Peter Leinweber
- Faculty of Agricultural and Environmental Science, Soil Science, University of Rostock, Justus-von-Liebig-Weg 6, 18051 Rostock, Germany
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Kirtzel J, Ueberschaar N, Deckert‐Gaudig T, Krause K, Deckert V, Gadd GM, Kothe E. Organic acids, siderophores, enzymes and mechanical pressure for black slate bioweathering with the basidiomycete
Schizophyllum commune. Environ Microbiol 2020; 22:1535-1546. [DOI: 10.1111/1462-2920.14749] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Revised: 07/08/2019] [Accepted: 07/15/2019] [Indexed: 11/28/2022]
Affiliation(s)
- Julia Kirtzel
- Friedrich Schiller UniversityInstitute of Microbiology, Microbial Communication, Neugasse 25, D‐07743 Jena Germany
| | - Nico Ueberschaar
- Friedrich Schiller UniversityMass Spectrometry Platform, Humboldtstr. 8, D‐07743 Jena Germany
| | - Tanja Deckert‐Gaudig
- Leibniz Institute of Photonic Technology (IPHT), Albert‐Einstein‐Str. 9, D‐07745 Jena Germany
| | - Katrin Krause
- Friedrich Schiller UniversityInstitute of Microbiology, Microbial Communication, Neugasse 25, D‐07743 Jena Germany
| | - Volker Deckert
- Leibniz Institute of Photonic Technology (IPHT), Albert‐Einstein‐Str. 9, D‐07745 Jena Germany
- Friedrich Schiller University, Institute of Physical Chemistry and Abbe Centre of Photonics, Helmholtzweg 4, D‐07743 Jena Germany
| | - Geoffrey Michael Gadd
- University of Dundee, Geomicrobiology Group, School of Life Sciences, Dundee DD1 5EH Scotland UK
| | - Erika Kothe
- Friedrich Schiller UniversityInstitute of Microbiology, Microbial Communication, Neugasse 25, D‐07743 Jena Germany
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Photocatalytic and antifungal activity of CaZn2(OH)6•2H2O mixed with Ca(OH)2 for its application in cultural heritage. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2020.112440] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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15
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Kobetičová K, Černý R. Terrestrial eutrophication of building materials and buildings: An emerging topic in environmental studies. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 689:1316-1328. [PMID: 31466168 DOI: 10.1016/j.scitotenv.2019.06.423] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 05/27/2019] [Accepted: 06/25/2019] [Indexed: 06/10/2023]
Abstract
Eutrophication has been analyzed mostly in aquatic or soil environments to date. Direct terrestrial eutrophication of building materials and buildings, contrary e.g. to their biodeterioration or biodegradation, was studied so rarely that even its exact definition does not exist yet. In this paper, eutrophication of building materials and buildings as an emerging topic in environmental studies is analyzed in detail and future developments in the field are contemplated. The analysis includes a survey of directly and indirectly related research studies, identification of basic mechanisms and principal factors, and a critical assessment of current methodologies potentially applicable for recognition and classification of eutrophication of building materials and buildings. A definition of direct terrestrial eutrophication of building materials and buildings is proposed afterwards and an alternative method for the calculation of their eutrophication potential is suggested. Finally, recommendations for solving the most urgent problems in future research are formulated.
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Affiliation(s)
- Klára Kobetičová
- Department of Materials Engineering and Chemistry, Faculty of Civil Engineering, Czech Technical University in Prague, Thákurova 7, CZ-166 29 Prague, Czech Republic.
| | - Robert Černý
- Department of Materials Engineering and Chemistry, Faculty of Civil Engineering, Czech Technical University in Prague, Thákurova 7, CZ-166 29 Prague, Czech Republic
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16
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In vitro biodegradation potential of airborne Aspergilli and Penicillia. Naturwissenschaften 2019; 106:8. [DOI: 10.1007/s00114-019-1603-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Revised: 12/29/2018] [Accepted: 01/29/2019] [Indexed: 01/11/2023]
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17
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Ponizovskaya VB, Rebrikova NL, Kachalkin AV, Antropova AB, Bilanenko EN, Mokeeva VL. Micromycetes as colonizers of mineral building materials in historic monuments and museums. Fungal Biol 2019; 123:290-306. [PMID: 30928038 DOI: 10.1016/j.funbio.2019.01.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Revised: 12/29/2018] [Accepted: 01/14/2019] [Indexed: 10/27/2022]
Abstract
Complex of microfungi colonizing mineral building materials, i.e. limestone and plaster, in interiors of cultural heritage was characterized. Wide-scale investigation was carried out with fourteen objects studied. We have revealed a specific culturable community. We have analyzed role of obtained microfungi in biodeterioraton process on the basis of our tests (pH and water activity preferences, ability to solubilize CaCO3) and literature data (substrate preferences and enzyme activities). The species most actively developing in mineral materials in indoor environments were Acremonium charticola, Acremonium furcatum, Lecanicillium sp., Parengyodontium album, Purpureocillium lilacinum and Sarocladium kiliense. Considering this fact and their ability to develop successfully at extremely wide range of pH values from slightly acidic to alkaline ones and their high enzymatic activities we conclude that the listed species are of high interest in seeking the cause of biodeterioration. These species can actively develop in materials penetrating for years deep into the substrates and causing their deterioration in conditions of considerably heightened moisture content. In this group, A. charticola and Lecanicillium sp. were able to solubilize CaCO3.
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Affiliation(s)
- Valeria B Ponizovskaya
- Department of Mycology and Algology, Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, 119234 Moscow, Russia.
| | - Natalia L Rebrikova
- State Research Institute for Restauration, 44-1 Gastello, 107014 Moscow, Russia
| | - Aleksey V Kachalkin
- Department of Soil Biology, Faculty of Soil Science, Lomonosov Moscow State University, 1-12 Leninskie Gory, 119234 Moscow, Russia; All-Russian Collection of Microorganisms, G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, 5 Pr. Nauki, 142290 Pushchino, Moscow Region, Russia
| | - Anna B Antropova
- Mechnikov Research Institute for Vaccines and Sera, 5a Malyy Kazennyy Pereulok, 105064 Moscow, Russia
| | - Elena N Bilanenko
- Department of Mycology and Algology, Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, 119234 Moscow, Russia
| | - Vera L Mokeeva
- Department of Mycology and Algology, Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, 119234 Moscow, Russia
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18
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Gaylarde C, Baptista-Neto JA, Tabasco-Novelo C, Ortega-Morales O. Weathering of granitic gneiss: A geochemical and microbiological study in the polluted sub-tropical city of Rio de Janeiro. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 644:1641-1647. [PMID: 30743877 DOI: 10.1016/j.scitotenv.2018.07.303] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2018] [Revised: 07/21/2018] [Accepted: 07/21/2018] [Indexed: 06/09/2023]
Abstract
Chemical and biological weathering were studied on two historic churches in the city of Rio de Janeiro, Brazil. The churches exhibited contour scaling, granular disintegration and black crust development. High levels of SO4 were found in façade stones of one church, São José, with significant levels of lead and copper. This suggests that vehicle emissions were important in stonework decay. Both gypsum and halite were detected, typical of buildings influenced by marine atmosphere and fuel-polluted environment. There was little bioweathering on this church, although the filamentous cyanobacterium Scytonema detected could be involved in black crust production. The other church (Nossa Senhora da Gloria) showed strong granular disintegration, with a green coloration on internal surfaces of some flakes removed for study. This church showed lower levels of geochemically important weathering compounds but was more colonized by fungi and cyanobacteria. The latter were shown by scanning electron microscopy to grow within the granitic gneiss stone and were probably involved in dissolution and redeposition of minerals. This church is rather far from the intense traffic of the centre of Rio de Janeiro and from Guanabara Bay, source of marine aerosols; it is located upon a green hill, where plant-associated fungi and cyanobacteria can readily gain access to the façade. The results of this study show the importance of local environment on the relative proportions of chemical and biological weathering of stone.
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Affiliation(s)
- Christine Gaylarde
- Department of Microbiology and Plant Biology, Oklahoma University, 770 Van Vleet Oval, Norman, OK 73019, USA.
| | | | - Carolina Tabasco-Novelo
- Department of Applied Physics, CINVESTAV-Unidad Mérida, Carretera Antigua a Progreso, Km. 6, 97310 Mérida, Yucatán, Mexico
| | - Otto Ortega-Morales
- Departamento de Microbiología Ambiental y Biotecnología, Universidad Autónoma de Campeche, Av. Agustín Melgar s/n, Col. Buenavista, C.P. 24039, Campeche, Campeche, Mexico
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19
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Unković N, Dimkić I, Stupar M, Stanković S, Vukojević J, Ljaljević Grbić M. Biodegradative potential of fungal isolates from sacral ambient: In vitro study as risk assessment implication for the conservation of wall paintings. PLoS One 2018; 13:e0190922. [PMID: 29309432 PMCID: PMC5757982 DOI: 10.1371/journal.pone.0190922] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Accepted: 12/25/2017] [Indexed: 01/11/2023] Open
Abstract
The principal purpose of the study was to evaluate in vitro the potential ability of fungal isolates obtained from the painted layer of frescoes and surrounding air to induce symptoms of fresco deterioration, associated with their growth and metabolism, so that the risk of such deterioration can be precisely assessed and appropriate conservation treatments formulated. Biodegradative properties of the tested microfungi were qualitatively characterized through the use of a set of special agar plates: CaCO3 glucose agar (calcite dissolution), casein nutrient agar (casein hydrolysis), Czapek-Dox minimal medium (pigment secretion); and Czapek-Dox minimal broth (acid and alkali production). Most of the tested isolates (71.05%) demonstrated at least one of the degradative properties, with Penicillium bilaiae as the most potent, since it tested positive in all four. The remaining isolates (28.95%) showed no deterioration capabilities and were hence considered unlikely to partake in the complex process of fungal deterioration of murals via the tested mechanisms. The obtained results clearly indicate that utilization of fast and simple plate assays can provide insight into the biodegradative potential of deteriogenic fungi and allow for their separation from allochthonous transients, a prerequisite for precise assessment of the amount of risk posed by a thriving mycobiota to mural paintings.
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Affiliation(s)
- Nikola Unković
- Department for Algology, Mycology and Lichenology, Institute of Botany and Botanical Garden “Jevremovac”, Faculty of Biology, University of Belgrade, Belgrade, Serbia
| | - Ivica Dimkić
- Department for Microbiology, Institute of Botany and Botanical Garden “Jevremovac”, Faculty of Biology, University of Belgrade, Belgrade, Serbia
| | - Miloš Stupar
- Department for Algology, Mycology and Lichenology, Institute of Botany and Botanical Garden “Jevremovac”, Faculty of Biology, University of Belgrade, Belgrade, Serbia
| | - Slaviša Stanković
- Department for Microbiology, Institute of Botany and Botanical Garden “Jevremovac”, Faculty of Biology, University of Belgrade, Belgrade, Serbia
| | - Jelena Vukojević
- Department for Algology, Mycology and Lichenology, Institute of Botany and Botanical Garden “Jevremovac”, Faculty of Biology, University of Belgrade, Belgrade, Serbia
| | - Milica Ljaljević Grbić
- Department for Algology, Mycology and Lichenology, Institute of Botany and Botanical Garden “Jevremovac”, Faculty of Biology, University of Belgrade, Belgrade, Serbia
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20
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Interactions between abundant fungal species influence the fungal community assemblage on limestone. PLoS One 2017; 12:e0188443. [PMID: 29211748 PMCID: PMC5718416 DOI: 10.1371/journal.pone.0188443] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Accepted: 11/07/2017] [Indexed: 11/19/2022] Open
Abstract
The assembly of fungal communities on stone materials is mainly influenced by the differential bioreceptivity of such materials and environmental conditions. However, little is known about the role of fungal interactions in the colonization and establishment of fungal species. We analyzed the effects of intra- and interspecific interactions between 11 species of fungi in oligotrophic and copiotrophic media and on limestone coupons. In a previous study, these species were the most frequently isolated in the epilithic biofilms of limestone walls exposed to a subtropical climate. In the culture media, we found a greater frequency of intra- and interspecific inhibitory effects in the oligotrophic medium than in the copiotrophic medium. On the limestone coupons, all fungi were able to establish; however, the colonization success rate varied significantly. Cladosporium cladosporioides had a less extensive colonization in isolation (control) than in dual interactions (coexistence) with other species. Phoma eupyrena exhibited the highest colonization success rate and competitive dominance among all tested species. X-ray diffraction (XRD) and scanning electron microscope (SEM) analyses revealed that Pestalotiopsis maculans and Paraconiothyrium sp. produced calcium oxalate crystals during their growth on coupon surfaces, both in isolation and in dual interactions. Our results demonstrate that interactions between abundant fungal species influence the fungal colonization on substrates, the biomineralization and the fungal community assemblage growing in limestone biofilms.
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Sierra-Fernandez A, De la Rosa-García SC, Gomez-Villalba LS, Gómez-Cornelio S, Rabanal ME, Fort R, Quintana P. Synthesis, Photocatalytic, and Antifungal Properties of MgO, ZnO and Zn/Mg Oxide Nanoparticles for the Protection of Calcareous Stone Heritage. ACS APPLIED MATERIALS & INTERFACES 2017; 9:24873-24886. [PMID: 28679041 DOI: 10.1021/acsami.7b06130] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
More recently, the biological colonization of stone heritage and consequently its biodeterioration has become the focus of numerous studies. Among all microorganisms, fungi are considered to be one of the most important colonizers and biodegraders on stone materials. This is why the development of new antifungal materials requires immediate action. ZnMgO nanoparticles (NPs) have several exciting applications in different areas, highlighting as an efficient antimicrobial agent for medical application. In this research, the application of Zn-doped MgO (Mg1-xZnxO, x = 0.096) NPs obtained by sol-gel method as antifungal coatings on dolomitic and calcitic stones has been explored as a means to develop effective protective coatings for stone heritage. Moreover, the photocatalytic and antifungal activity of Mg1-xZnxO NPs were comparatively studied with single ZnO and MgO NPs. Thus, compared to the MgO and ZnO nanomaterials, the Mg1-xZnxO NPs exhibited an enhanced photocatalytic activity. After UV irradiation for 60 min, 87% methylene blue was degraded over Zn-doped MgO NPs, whereas only 58% and 38% of MB was degraded over ZnO and MgO NPs, respectively. These nanoparticles also displayed a better antifungal activity than that of single pure MgO or ZnO NPs, inhibiting the growth of fungi Aspergillus niger, Penicillium oxalicum, Paraconiothyrium sp., and Pestalotiopsis maculans, which are especially active in the bioweathering of stone. The improved photocatalytic and antifungal properties detected in the Mg1-xZnxO NPs was attributed to the formation of crystal defects by the incorporation of Zn into MgO. The application of the MgO- and Zn-doped MgO NPs as protective coatings on calcareous stones showed important antifungal properties, inhibiting successfully the epilithic and endolithic colonization of A. niger and P. oxalicum in both lithotypes, and indicating a greater antifungal effectiveness on Zn-doped MgO NPs. The use of Zn-doped MgO NPs may thus represent a highly efficient antifungal protection for calcareous stone heritage.
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Affiliation(s)
- A Sierra-Fernandez
- Instituto de Geociencias (CSIC, UCM) , C/José Antonio Novais 12, CP 28040, Madrid, Spain
- Carlos III University of Madrid , Department of Materials Science and Engineering and Chemical Engineering, Avda. Universidad 30, 28911 Leganés, Madrid, Spain
| | - S C De la Rosa-García
- Laboratorio de Microbiología Aplicada, División de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco (UJAT) , 86040 Villahermosa, Tabasco México
| | - L S Gomez-Villalba
- Instituto de Geociencias (CSIC, UCM) , C/José Antonio Novais 12, CP 28040, Madrid, Spain
| | - S Gómez-Cornelio
- Laboratorio de Microbiología Aplicada, División de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco (UJAT) , 86040 Villahermosa, Tabasco México
| | - M E Rabanal
- Carlos III University of Madrid , Department of Materials Science and Engineering and Chemical Engineering, Avda. Universidad 30, 28911 Leganés, Madrid, Spain
- Instituto Tecnológico de Química y Materiales "Álvaro Alonso Barba" (IAAB) , Avda. Universidad 30, 28911 Leganés, Madrid, España
| | - R Fort
- Instituto de Geociencias (CSIC, UCM) , C/José Antonio Novais 12, CP 28040, Madrid, Spain
| | - P Quintana
- Departamento de Física Aplicada, CINVESTAV-IPN , A.P.73, Cordemex, Mérida, Yucatán México
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