Physicochemical Properties of Extracellular Polymeric Substances Produced by Three Bacterial Isolates From Biofouled Reverse Osmosis Membranes

Rethinking characterization, application, and importance of extracellular polymeric substances in water technologies

Biofilms play important roles in water technologies such as membrane treatments and activated sludge. The extracellular polymeric substances (EPS) are key components of biofilms. However, the precise nature of these substances and how they influence biofilm formation and behavior remain critical knowledge gaps. EPS are produced by many different microorganisms and span multiple biopolymer classes, which each require distinct strategies for characterization. The biopolymers additionally associate with each other to form insoluble complexes. Here, we explore recent progress toward resolving the structures and functions of EPS, where a shift towards direct functional assessments and advanced characterization techniques is necessary. This will enable integration with better microbial community and omics analyses to understand EPS biosynthesis pathways and create further opportunities for EPS control and valorization.

Deciphering the molecular interaction of extracellular polymeric substances of a marine bacterium Pseudomonas furukawaii PPS-19 with petroleum hydrocarbons and development of bioadsorbent

Petroleum hydrocarbon contamination is a serious hazard to marine environments, affecting ecosystems and marine life. However, extracellular polymeric substances (EPS) of marine bacteria constituting various hydrophilic and hydrophobic functional groups sequester petroleum hydrocarbons (PHs). In this study, interaction of EPS of Pseudomonas furukawaii PPS-19 with PHs such as crude oil, n-dodecane, and pyrene and its impact on PHs adsorption was investigated. Protein component of EPS was increased after treatment with PHs. Red shift of UV-Vis spectra implied change in molecular structure of EPS. Functional groups of proteins (CO, NH2) and polysaccharides (C-C, C-OH, C-O-C) predominantly interacted with PHs. Interaction with PHs affected secondary structure of EPS. Change in binding energies of corresponding functionalities of C 1s, O 1s, and N 1s confirmed the interaction. Disruption of crystalline peaks led to increased pore size in EPS primarily due to the increase in surface electronegativity. Static quenching mechanism unveils formation of complex between fulvic acid of EPS and PHs. Relative expression of alg8 gene was significantly increased in the presence of n-dodecane (6.31 fold) (P < 0.05; One way ANOVA). n-dodecane and pyrene adsorption capacity of Immobilized EPS was significantly higher (356.5 and 338.2 mg g-1, respectively) (P < 0.001; One way ANOVA) than control. Adsorption rate fits into the pseudo-second-order kinetic model. This study establishes that interaction of PHs causes structural and physical changes in EPS and EPS could be used as an adsorbent material for the sequestration of PHs pollution.

Measuring the Surface Tension of Atmospheric Particles and Relevant Mixtures to Better Understand Key Atmospheric Processes

Aerosol and aqueous particles are ubiquitous in Earth's atmosphere and play key roles in geochemical processes such as natural chemical cycles, cloud and fog formation, air pollution, visibility, climate forcing, etc. The surface tension of atmospheric particles can affect their size distribution, condensational growth, evaporation, and exchange of chemicals with the atmosphere, which, in turn, are important in the above-mentioned geochemical processes. However, because measuring this quantity is challenging, its role in atmospheric processes was dismissed for decades. Over the last 15 years, this field of research has seen some tremendous developments and is rapidly evolving. This review presents the state-of-the-art of this subject focusing on the experimental approaches. It also presents a unique inventory of experimental adsorption isotherms for over 130 mixtures of organic compounds in water of relevance for model development and validation. Potential future areas of research seeking to better determine the surface tension of atmospheric particles, better constrain laboratory investigations, or better understand the role of surface tension in various atmospheric processes, are discussed. We hope that this review appeals not only to atmospheric scientists but also to researchers from other fields, who could help identify new approaches and solutions to the current challenges.

Characterization of the redox-active extracellular polymeric substances in an anaerobic methanotrophic consortium

Anaerobic oxidation of methane (AOM) is a microbial process of importance in the global carbon cycle. AOM is predominantly mediated by anaerobic methanotrophic archaea (ANME), the physiology of which is still poorly understood. Here we present a new addition to the current physiological understanding of ANME by examining, for the first time, the biochemical and redox-active properties of the extracellular polymeric substances (EPS) of an ANME enrichment culture. Using a 'Candidatus Methanoperedens nitroreducens'-dominated methanotrophic consortium as the representative, we found it can produce an EPS matrix featuring a high protein-to-polysaccharide ratio of ∼8. Characterization of EPS using FTIR revealed the dominance of protein-associated amide I and amide II bands in the EPS. XPS characterization revealed the functional group of C-(O/N) from proteins accounted for 63.7% of total carbon. Heme-reactive staining and spectroscopic characterization confirmed the distribution of c-type cytochromes in this protein-dominated EPS, which potentially enabled its electroactive characteristic. Redox-active c-type cytochromes in EPS mediated the EET of 'Ca. M. nitroreducens' for the reduction of Ag+ to metallic Ag, which was confirmed by both ex-situ experiments with extracted soluble EPS and in-situ experiments with pristine EPS matrix surrounding cells. The formation of nanoparticles in the EPS matrix during in-situ extracellular Ag + reduction resulted in a relatively lower intracellular Ag distribution fraction, beneficial for alleviating the Ag toxicity to cells. The results of this study provide the first biochemical information on EPS of anaerobic methanotrophic consortia and a new insight into its physiological role in AOM process.

Fabric Fiber as a Biofilm Carrier for Halomonas sp. H09 Mixed with Lactobacillus rhamnosus GG

Biofilm bacteria have stronger resistance to the adverse external environment compared to planktonic bacteria, and biofilms of non-pathogenic bacteria have strong potential for applications in food. In this experiment, Halomonas sp. H09 and Lactobacillus rhamnosus GG, which have film-forming ability in monoculture and better film-forming ability in mixed culture than the two strains alone, were selected as the target strains for mixed culture. According to SEM observation and bacterial dry weight measurement, the target strain formed a dense biofilm on a 0.1 g/L chitosan-modified cellulose III carrier. Furthermore, the presence of extracellular polymeric substances in biofilms was verified by EDS and FTIR. The results showed that 0.1 g/L chitosan-modified cellulose III was an ideal carrier material for immobilization of Halomonas sp. H09 with Lactobacillus rhamnosus GG biofilm. This research provided a basis for the selection of non-pathogenic mixed-bacteria biofilm carriers.

Exploring biosynthesis strategies to boost the yield of exopolysaccharide-protein blend from Bacillus arachidis SY8(T), an isolated native strain, as a potent adsorbent for heavy metals removal

This investigation centers on the synthesis of a polysaccharide-protein blend produced by an isolated native strain (99.12 % phylogenetic affinity with Bacillus arachidis SY8(T)). The primary objective was to investigate the production of extracellular polymeric substances (EPS) under diverse stress conditions, encompassing exposure to heavy metal ions, salt, and toxic agents. Additionally, the impact of environmental parameters, namely pH, inoculation percentage, and time, on the production was investigated. Subsequently, the study examined the biosorption potential of the EPS produced for Pb(II), Cu(II), and Mn(II). The EPS obtained was thoroughly characterized via various tests. Rheological evaluations of an EPS solution (2 wt%) confirmed its pseudo-plastic and non-Newtonian fluid properties, while TGA analysis demonstrated its thermal stability up to 600 °C. Additional analyses, including GPC, FTIR, and H-NMR, provide further insights into the produced EPS. The best conditions for EPS production are determined: 5 % NaCl salt, serving as an effective stress inducer, and 37 °C, pH 6, with a 5 % inoculation, over 96 h. EPS demonstrates remarkable removal efficiencies of 99.9, 99.4 and 78.9 % for Pb(II), Cu(II), and Mn(II), respectively. These findings highlight the potential of EPS as an effective agent for removing heavy metal ions.

Continuous valorization of food waste and oily food waste using bacteria-pumice and bacteria-smectite nanocomposites: Alternative cell immobilization and zooplankton lifespan impact

Recycling waste into commercial products is a profitable strategy but the lifetime of immobilized cells for long-term waste treatment remains a problem. This study presents alternative cell immobilization methods for valorizing food waste (FW) and oily food waste (OFW) to microbial carotenoids and proteins. Carriers (pumice or smectite), magnetite nanoparticles, and isolated photosynthetic bacteria were integrated to obtain magnetically recoverable bacteria-pumice and bacteria-smectite nanocomposites. After recycling five batches (50 d), chemical oxygen demand removal from FW reached 76% and 78% with the bacteria-pumice and bacteria-smectite nanocomposite treatments, respectively, and oil degradation in OFW reached 71% and 62%, respectively. Destructive changes did not occur, suggesting the durability of nanocomposites. The used nanocomposites had no impact on the lifespan of Moina macrocopa or water quality as assessed by toxicity analysis. Bacteria-pumice and bacteria-smectite nanocomposites are efficient for food waste recycling and do not require secondary treatment before being discharged into the environment.

Lead removal from the aqueous solution by extracellular polymeric substances produced by the marine diatom Navicula salinicola

Microbial extracellular polymeric substances (EPS) have recently emerged as significant contributors in diverse biotechnological applications. Extracellular polymeric substances (EPS), produced by a Navicula salinicola strain, have been studied for potential applications in a specific heavy metal (lead (Pb II)) removal from wastewater. The optimisation of operational parameters, mainly pH, Pb and EPS concentrations, using the Box-Behnken design (BBD) was undertaken to enhance lead uptake. The higher Pb adsorption capacity reached 2211.029 mg/g. Hydroxyl, carbonyl, carboxyl, phosphoric, and sulfhydryl groups were identified quantitatively as potential sites for Pb adsorption. EPS exhibited a notable flocculation rate of 70.20% in kaolin clay at a concentration of 15 mg/L. They demonstrated an emulsifying activity greater than 88%, showcasing their versatile potential for both sedimentation processes and stabilising liquid-liquid systems. EPS could be excellent nonconventional renewable biopolymers for treating water and wastewater.

Adaptive mechanism of the marine bacterium Pseudomonas sihuiensis-BFB-6S towards pCO2 variation: Insights into synthesis of extracellular polymeric substances and physiochemical modulation

Marine bacteria can adapt to various extreme environments by the production of extracellular polymeric substances (EPS). Throughout this investigation, impact of variable pCO2 levels on the metabolic activity and physiochemical modulation in EPS matrix of marine bacterium Pseudomonas sihuiensis - BFB-6S was evaluated using a fluorescence microscope, excitation-emission matrix (EEM), 2D-Fourier transform infrared correlation spectroscopy (2D-ATR-FTIR-COS), FT-NMR and TGA-DSC. From the results at higher pCO2 levels, there was a substantial reduction in EPS production by 58-62.8 % (DW). In addition to the biochemical composition of EPS, reduction in carbohydrates (8.7-47.6 %), protein (7.1-91.5 %), and lipids (16.9-68.6 %) content were observed at higher pCO2 levels. Functional discrepancies of fluorophores (tyrosine and tryptophan-like) in EPS, speckled differently in response to variable pCO2. The 2D-ATR-FTIR-COS analysis revealed functional amides (CN, CC, CO bending, -NH bending in amines) of EPS were preferentially altered, which led to the domination of polysaccharides relevant functional groups at higher pCO2. 1H NMR analysis of EPS confirmed the absence of chemical signals from H-C-COOH of proteins, α, β anomeric protons, and acetyl group relevant region at higher pCO2 levels. These findings can contribute new insights into the influence of pCO2 on the adaptation of marine microbes in future ocean acidification scenarios.

The role of extracellular polymeric substances (EPS) in chemical-degradation of persistent organic pollutants in soil: A review

Persistent organic pollutants (POPs) in soil show high environmental risk due to their high toxicity and low biodegradability. Studies have demonstrated the degradation function of microbial extracellular polymeric substances (EPS) on POPs in various matrices. However, the degradation mechanisms and the factors that influence the process in soil have not been clearly illustrated. In this review, the characteristics of EPS were introduced and the possible mechanisms of EPS on degradation of organic pollutants (e.g., external electron transfer, photodegradation, and enzyme catalysis) were comprehensively discussed. In addition, the environmental conditions (e.g., UV, nutrients, and redox potential) that could influence the production and degradation-related active components of EPS were addressed. Moreover, the current approaches on the application of EPS in biotechnology were summarized. Further, the future perspectives of enhancement on degradation of POPs by regulating EPS were discussed. Overall, this review could provide a new thought on remediation of POPs by widely-existing EPS in soil with low-cost and minimized eco-disturbance.

Aminated Rapeseed Husks (Brassica napus) as an Effective Sorbent for Removing Anionic Dyes from Aqueous Solutions

The study investigated the effect of modifying rapeseed husks with ammonia and epichlorohydrin on their sorption capacity against anionic reactive dyes: Reactive Black 5 (RB5) and Reactive Yellow 84 (RY84). Its scope included sorbents characterization (FTIR, pHPZC), determination of pH influence on the sorption effectiveness of dyes, the adsorption kinetics of dyes, as well as the maximum sorption capacity. The study proved that the reaction of rapeseed husk biomass with ammonia can lead to its amination, namely to the introduction of amine functional groups into the material's structure. The sorption effectiveness of RB5 and RY84 on the tested sorbents was the highest in the pH range of 2-3. The dye sorption kinetics was well described by the pseudo-second-order model. The sorption equilibrium time ranged from 90 to 180 min, and depended on the initial concentration of dyes and the number of amino groups on the sorbent's surface. The most efficient of the sorbents tested were rapeseed husks pre-activated with epichlorohydrin and then aminated with ammonia. Their sorption capacity determined for RB5 and RY84 was 135.83 mg/g and 114.23 mg/g, respectively, which was 794% and 737% higher than that of the non-modified husks.

Exaggerated interaction of biofilm-developed microplastics and contaminants in aquatic environments

Biofilm-developed microplastics (MPs) may serve as important vectors for contaminants in aquatic environments. Elucidating the interactions between biofilm-developed MPs and coexisting contaminants is crucial for understanding the vector capacities of MPs. However, little is known about how the adverse effects of contaminants on MP surface-colonized biofilms influence their vector capacity. In this study, we aimed to investigate the interaction mechanism of biofilms colonizing the surface of MPs with coexisting contaminants using microcosm experiments and biofilm characterization techniques. The results indicated that the biofilm biomass on polystyrene increased over time, providing an additional abundance of oxygen-containing functional groups and promoting Cd accumulation by biofilm-developed polystyrene. Moreover, as a coexisting contaminant, Cd exerted adverse effects such as additional mortality of microorganisms and senescence and MP-colonized biofilm shedding. Consequently, the contaminant vector capacity of biofilm-developed MPs could be mitigated. Thus, the adverse effects of coexisting contaminants on biofilms influenced the ability of MPs to act as vectors in aquatic environments. Neglecting the negative effects of contaminants on biofilms may lead to an overestimation of the contaminant vector capacity of biofilm-developed MPs. This study provides support for more accurate assessment of the interactions between biofilm-developed MPs as vectors and contaminants in aquatic environments.

Microalgae biofilm system as an efficient tool for wastewater remediation and potential bioresources for pharmaceutical product production: an overview

The role of microalgae in wastewater remediation and metabolite production has been well documented, but the limitations of microalgae harvesting and low biomass production call for a more sustainable method of microalgae utilization. The current review gives an insight on how microalgae biofilms can be utilized as a more efficient system for wastewater remediation and as potential source of metabolite for pharmaceutical product production. The review affirms that the extracellular polymeric substance (EPS) is the vital component of the microalgae biofilm because it influences the spatial organization of the organisms forming microalgae biofilm. The EPS is also responsible for the ease interaction between organisms forming microalgae biofilm. This review restate the crucial role play by EPS in the removal of heavy metals from water to be due to the presence of binding sites on its surface. This review also attribute the ability of microalgae biofilm to bio-transform organic pollutant to be dependent on enzymatic activities and the production of reactive oxygen species (ROS). The review assert that during the treatment of wastewater, the wastewater pollutants induce oxidative stress on microalgae biofilms. The response of the microalgae biofilm toward counteracting the stress induced by ROS leads to production of metabolites. These metabolites are important tools that can be harness for the production of pharmaceutical products.

Antibiotic resistance profiling and valorization of food waste streams to starter culture biomass and exopolysaccharides through fed-batch fermentations

The present study evaluated antibiotic resistance (ABR) in bacteria isolated from different food wastes viz., meat slaughterhouses, dairy and restaurants. About 120 strains isolated from the food waste were subjected to ABR screening. More than 50% of all the strains were resistant to Vancomycin, Neomycin and Methicilin, which belong to third-generation antibiotics. Two lactic acid bacteria (LAB) free of ABR were chosen to be used as starter cultures in media formulated from food waste. Food waste combination (FWC-4) was found to be on par with the nutrient broth in biomass production. The non-ABR LAB strains showed excellent probiotic properties, and in the fed-batch fermentation process, adding a nitrogen source (soya protein) enhanced the microbial biomass (3.7 g/l). Additionally, exopolysaccharide production was found to be 2.3 g/l. This study highlights the ABR incidence in food waste medium and its economic advantage for starter culture biomass production.

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Supplementary Information

The online version contains supplementary material available at 10.1007/s10068-022-01222-9.

Monitoring of biofilm development and physico-chemical changes of floating microplastics at the air-water interface

Microplastics in the aquatic environment serve as a habitat for microbial life, on which they can form biofilms. However, how the development of the biofilm alters the properties of floating microplastics that are at the air-water interface and, therefore, not fully submerged, is not well understood. In this context, an aging experiment was conducted to monitor biofilm formation and changes in physico-chemical properties of low-density polyethylene (floating) microplastics over time. The growth of the biofilm followed the typical bacterial/biofilm growth phases and reached about 30% of the total mass of the microplastics, while the concentration of extracellular polymeric substances within the biofilm remained stable. Presence of chlorophyll a and urease activity indicated presence of photosynthetic microrganisms within the biofilm which was also confirmed by analysis of the biofilm composition. Chemical characterization by FTIR showed the formation of additional functional groups attributed to the formed biofilm, and SEM imaging showed cracks on the surface of the aged microplastics, indicating incipient degradation of the polyethylene. Moreover, the adsorption capacity of the aged particles for metals (Pb(II)) was 52% higher compared to the pristine ones. Aging increased the density and size of the particles; however, it did not lead to the submersion of the aged particles even after 12 weeks of aging, suggesting that additional environmental processes may influence the transport of microplastics from the air-water interface into the water body.

Biofouling of reverse osmosis membranes: assessment by surface-enhanced Raman spectroscopy and microscopic imaging

The decline in the performance of spiral-wound reverse osmosis (SWRO) membranes is frequently due to biofouling. This study focus on qualitative and quantitative diagnosis of SWRO membrane biofouling. Bacterial counts on the different surfaces of the fouled membranes were carried out. Surface enhanced Raman spectroscopy (SERS) was performed to highlight clogging materials as well as their natures and identity. The topography of the fouled membranes and the structures of biofilms were visualized by fluorescence microscopy (FM) and scanning electron microscopy (SEM). The results indicated the presence of bacteria in the different SWRO membrane areas. Those strongly adhered were significantly higher than those weakly. It varied between 26 × 10⁵ and 262 × 10⁵ CFU m^-2. However, SERS mapping showed different fouling levels and the thickness of the fouling layer was 5 µm. Microscopic imaging revealed biotic and abiotic deposits. These data can together allow better management of the seawater desalination process.

The exceptionally efficient quorum quenching enzyme LrsL suppresses Pseudomonas aeruginosa biofilm production

Quorum quenching (QQ) is the enzymatic degradation of molecules used by bacteria for synchronizing their behavior within communities. QQ has attracted wide attention due to its potential to inhibit biofilm formation and suppress the production of virulence factors. Through its capacity to limit biofouling and infections, QQ has applications in water treatment, aquaculture, and healthcare. Several different QQ enzymes have been described; however, they often lack the high stability and catalytic efficiency required for industrial applications. Previously, we identified genes from genome sequences of Red Sea sediment bacteria encoding potential QQ enzymes. In this study, we report that one of them, named LrsL, is a metallo-β-lactamase superfamily QQ enzyme with outstanding catalytic features. X-ray crystallography shows that LrsL is a zinc-binding dimer. LrsL has an unusually hydrophobic substrate binding pocket that can accommodate a broad range of acyl-homoserine lactones (AHLs) with exceptionally high affinity. In vitro, LrsL achieves the highest catalytic efficiency reported thus far for any QQ enzyme with a K_cat/K_M of 3 × 10⁷. LrsL effectively inhibited Pseudomonas aeruginosa biofilm formation without affecting bacterial growth. Furthermore, LrsL suppressed the production of exopolysaccharides required for biofilm production. These features, and its capacity to regain its function after prolonged heat denaturation, identify LrsL as a robust and unusually efficient QQ enzyme for clinical and industrial applications.

A new inoculation method of sulfur autotrophic denitrification reactor for accelerated start-up and better low-temperature adaption

Elemental sulfur (S⁰) autotrophic denitrification (SAD) has been proved feasible for nitrate removal from aquatic environments. The long start-up period up to weeks of the SAD reactor impedes its industrial application. To accelerate the start-up process, this study employed S⁰ powder packed sequencing batch reactor operated for 10 days to obtain a seed biofilm, which was inoculated into a regular S⁰ flake packed bed reactor afterwards. Merely two days after inoculation, the reactor inoculated with seed biofilm was well started up and outperformed the control reactor, which was inoculated with regular anaerobic sludge and operated for more than 10 days, delivering much increased denitrification rate of 126 ± 0.68 mg N/(L·d) and a high nitrate removal efficiency of 93.0%. Batch tests during the start-up period showed that the seed biofilm developed well on S⁰ flakes and delivered improved nitrate removal performance than the control. Extracellular polymeric substance (EPS) analysis revealed an abundant content of protein in tightly bound EPS in the biofilm developed from the seed biofilm, which was recognized as a major contributor to facilitate the biofilm's attachment and growth onto S⁰ flakes. After operating under moderate temperature, the reactors were tested at a reduced temperature of 15 °C. Results indicated that the reactor inoculated with seed biofilm showed stronger adaptation ability towards low temperature and sustained better denitrification performance than the control, which was attributed to increased protein content in tightly bound EPS produced by the microbes against low-temperature. Determination of the microbial communities in tested reactors when the whole experiment was closing found that sulfur-related genera were dominating in the packed-bed reactor inculcated with seed biofilm, which played an important role in the S⁰-based denitrification process.