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Jiang Y, Wang K, Xu L, Xu L, Xu Q, Mu Y, Hong Q, He J, Jiang J, Qiu J. DipR, a GntR/FadR-family transcriptional repressor: regulatory mechanism and widespread distribution of the dip cluster for dipicolinic acid catabolism in bacteria. Nucleic Acids Res 2024:gkae728. [PMID: 39180394 DOI: 10.1093/nar/gkae728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 08/07/2024] [Accepted: 08/09/2024] [Indexed: 08/26/2024] Open
Abstract
Dipicolinic acid is an essential component of bacterial spores for stress resistance, which is released into the environment after spore germination. In a previous study, a dip gene cluster was found to be responsible for the catabolism of dipicolinic acid in Alcaligenes faecalis JQ135. However, the transcriptional regulatory mechanism remains unclear. The present study characterized the new GntR/FadR family transcriptional factor DipR, showing that the dip cluster is transcribed as the six transcriptional units, dipR, dipA, dipBC, dipDEFG, dipH and dipJKLM. The purified DipR protein has six binding sites sharing the 6-bp conserved motif sequence 5'-GWATAC-3'. Site-directed mutations indicated that these motif sequences are essential for DipR binding. Moreover, the four key amino acid residues R63, R67, H196 and H218 of DipR, examined by site-directed mutagenesis, played crucial roles in DipR regulation. Bioinformatics analysis showed that dip clusters including dipR genes are widely distributed in bacteria, are taxon-related, and co-evolved with their hosts. This paper provides new insights into the transcriptional regulatory mechanism of dipicolinic acid degradation by DipR in bacteria.
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Affiliation(s)
- Yinhu Jiang
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Kexin Wang
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Lu Xu
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Lanyi Xu
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Qimiao Xu
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Yang Mu
- Taizhou Center for Disease Prevention and Control, Taizhou 225300, China
| | - Qing Hong
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Jian He
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Jiandong Jiang
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Jiguo Qiu
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
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Chen B, Yang Y, Wang Z, Dai X, Cao Y, Zhang M, Zhang D, Ni X, Zeng Y, Pan K. Surface Display of Duck Hepatitis A Virus Type 1 VP1 Protein on Bacillus subtilis Spores Elicits Specific Systemic and Mucosal Immune Responses on Mice. Probiotics Antimicrob Proteins 2024:10.1007/s12602-024-10323-2. [PMID: 39002060 DOI: 10.1007/s12602-024-10323-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/08/2024] [Indexed: 07/15/2024]
Abstract
Duck viral hepatitis, primarily caused by duck hepatitis A virus type 1 (DHAV-1), poses a significant threat to the global duck industry. Bacillus subtilis is commonly utilized as a safe probiotic in the development of mucosal vaccines. In this study, a recombinant strain of B. subtilis, designated as B. subtilis RV, was constructed to display the DHAV-1 capsid protein VP1 on its spore surface using the outer coat protein B as an anchoring agent. The immunogenicity of this recombinant strain was evaluated in a mouse model through mixed feeding immunization. The results indicated that B. subtilis RV could elicit specific systemic and mucosal immune responses in mice, as evidenced by the high levels of serum IgG, intestinal secretory IgA, and potent virus-neutralizing antibodies produced. Furthermore, the recombinant strain significantly upregulated the expression levels of IL-2, IL-6, IL-10, TNF-α, and IFN-γ in the intestinal mucosa. Thus, the recombinant strain maintained the balance of the Th1/Th2 immune response and demonstrated an excellent mucosal immune adjuvant function. In summary, this study suggests that B. subtilis RV can be a novel alternative for effectively controlling DHAV-1 infection as a vaccine-based feed additive.
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Affiliation(s)
- Bin Chen
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China
| | - Yang Yang
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China
| | - Zhenhua Wang
- College of Animal Husbandry and Veterinary, Chengdu Agricultural College, Chengdu, 611130, China
| | - Xixi Dai
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China
- Chongqing Three Gorges Vocational College, Chongqing, 404155, China
| | - Yuheng Cao
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China
| | - Mengwei Zhang
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China
| | - Dongmei Zhang
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China
| | - Xueqin Ni
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China
| | - Yan Zeng
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China.
| | - Kangcheng Pan
- College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road, Wenjiang District, Chengdu, 611130, China.
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Ortiz-Cortés LY, Aréchiga-Carvajal ET, Ventura-Canseco LMC, Ruíz-Valdiviezo VM, Gutiérrez-Miceli FA, Alvarez-Gutiérrez PE. Analysis of phenotypic changes in high temperature and low pH extreme conditions of Alicyclobacillus sendaiensis PA2 related with the cell wall and sporulation genes. Arch Microbiol 2024; 206:53. [PMID: 38180563 DOI: 10.1007/s00203-023-03735-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 11/01/2023] [Accepted: 11/04/2023] [Indexed: 01/06/2024]
Abstract
The A. sendaiensis PA2 is a polyextremophile bacterium. In this study, we analyze the A. sendaiensis PA2 genome. The genome was assembled and annotated. The A. sendaiensis PA2 genome structure consists of a 2,956,928 bp long chromosome and 62.77% of G + C content. 3056 CDSs were predicted, and 2921 genes were assigned to a putative function. The ANIm and ANIb value resulted in 97.17% and 96.65%, the DDH value was 75.5%, and the value of TETRA (Z-score) was 0.98. Comparative genomic analyses indicated that three systems are enriched in A. sendaiensis PA2. This strain has phenotypic changes in cell wall during batch culture at 65 °C, pH 5.0 and without carbon and nitrogen source. The presence of unique genes of cell wall and sporulation subsystem could be related to the adaptation of A. sendaiensis PA2 to hostile conditions.
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Affiliation(s)
- Lourdes Yaret Ortiz-Cortés
- Tecnológico Nacional de México/IT de Tuxtla Gutiérrez, Carretera Panamericana Km 1080, Col. Terán, 29050, Tuxtla Gutiérrez, Chiapas, México
| | | | | | - Victor Manuel Ruíz-Valdiviezo
- Tecnológico Nacional de México/IT de Tuxtla Gutiérrez, Carretera Panamericana Km 1080, Col. Terán, 29050, Tuxtla Gutiérrez, Chiapas, México
| | - Federico Antonio Gutiérrez-Miceli
- Tecnológico Nacional de México/IT de Tuxtla Gutiérrez, Carretera Panamericana Km 1080, Col. Terán, 29050, Tuxtla Gutiérrez, Chiapas, México
| | - Peggy Elizabeth Alvarez-Gutiérrez
- Tecnológico Nacional de México/IT de Tuxtla Gutiérrez, Carretera Panamericana Km 1080, Col. Terán, 29050, Tuxtla Gutiérrez, Chiapas, México.
- CONAHCYT/IT de Tuxtla Gutiérrez, Carretera Panamericana Km 1080, Col. Terán, 29050, Tuxtla Gutiérrez, Chiapas, México.
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