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Binh NA, Hauser LT, Hoa PV, Thao GTP, An NN, Nhut HS, Phuong TA, Verrelst J. Quantifying mangrove leaf area index from Sentinel-2 imagery using hybrid models and active learning. INTERNATIONAL JOURNAL OF REMOTE SENSING 2022; 43:5636-5657. [PMID: 36386862 PMCID: PMC7613820 DOI: 10.1080/01431161.2021.2024912] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Accepted: 12/27/2021] [Indexed: 06/16/2023]
Abstract
Mangrove forests provide vital ecosystem services. The increasing threats to mangrove forest extent and fragmentation can be monitored from space. Accurate spatially explicit quantification of key vegetation characteristics of mangroves, such as leaf area index (LAI), would further advance our monitoring efforts to assess ecosystem health and functioning. Here, we investigated the potential of radiative transfer models (RTM), combined with active learning (AL), to estimate LAI from Sentinel-2 spectral reflectance in the mangrove-dominated region of Ngoc Hien, Vietnam. We validated the retrieval of LAI estimates against in-situ measurements based on hemispherical photography and compared against red-edge NDVI and the Sentinel Application Platform (SNAP) biophysical processor. Our results highlight the performance of physics-based machine learning using Gaussian processes regression (GPR) in combination with AL for the estimation of mangrove LAI. Our AL-driven hybrid GPR model substantially outperformed SNAP (R2 = 0.77 and 0.44 respectively) as well as the red-edge NDVI approach. Comparing two canopy RTMs, the highest accuracy was achieved by PROSAIL (RMSE = 0.13 m2.m-2, NRMSE = 9.57%, MAE = 0.1 m2.m-2). The successful retrieval of mangrove LAI from Sentinel-2 can overcome extensive reliance on scarce in-situ measurements for training seen in other approaches and present a more scalable applicability by relying on the universal principles of physics in combination with uncertainty estimates. AL-based GPR models using RTM simulations allow us to adapt the genericity of RTMs to the peculiarities of distinct ecosystems such as mangrove forests with limited ancillary data. These findings bode potential for retrieving a wider range of vegetation variables to quantify large-scale mangrove ecosystem dynamics in space and time.
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Affiliation(s)
- Nguyen An Binh
- Ho Chi Minh City Institute of Resources Geography, Vietnam Academy of Science and Technology, Ho Chi Minh, Vietnam
| | - Leon T. Hauser
- Department of Environmental Biology, Institute of Environmental Sciences, Leiden University, Leiden, The Netherlands
| | - Pham Viet Hoa
- Ho Chi Minh City Institute of Resources Geography, Vietnam Academy of Science and Technology, Ho Chi Minh, Vietnam
| | - Giang Thi Phuong Thao
- Ho Chi Minh City Institute of Resources Geography, Vietnam Academy of Science and Technology, Ho Chi Minh, Vietnam
| | - Nguyen Ngoc An
- Ho Chi Minh City Institute of Resources Geography, Vietnam Academy of Science and Technology, Ho Chi Minh, Vietnam
| | - Huynh Song Nhut
- Ho Chi Minh City Institute of Resources Geography, Vietnam Academy of Science and Technology, Ho Chi Minh, Vietnam
| | - Tran Anh Phuong
- Ho Chi Minh City Institute of Resources Geography, Vietnam Academy of Science and Technology, Ho Chi Minh, Vietnam
| | - Jochem Verrelst
- Image Processing Laboratory (IPL), Parc Científic, Universitat de Valéncia, Paterna, Valéncia, Spain
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Integrating Semi-Supervised Learning with an Expert System for Vegetation Cover Classification Using Sentinel-2 and RapidEye Data. REMOTE SENSING 2022. [DOI: 10.3390/rs14153605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
In complex classification tasks, such as the classification of heterogeneous vegetation covers, the high similarity between classes can confuse the classification algorithm when assigning the correct class labels to unlabelled samples. To overcome this problem, this study aimed to develop a classification method by integrating graph-based semi-supervised learning (SSL) and an expert system (ES). The proposed method was applied to vegetation cover classification in a wetland in the Netherlands using Sentinel-2 and RapidEye imagery. Our method consisted of three main steps: object-based image analysis (OBIA), integration of SSL and an ES (SSLES), and finally, random forest classification. The generated image objects and the related features were used to construct the graph in SSL. Then, an independently developed and trained ES was used in the labelling stage of SSL to reduce the uncertainty of the process, before the final classification. Different spectral band combinations of Sentinel-2 were then considered to improve the vegetation classification. Our results show that integrating SSL and an ES can result in significantly higher classification accuracy (83.6%) compared to a supervised classifier (64.9%), SSL alone (71.8%), and ES alone (69.5%). Moreover, utilisation of all Sentinel-2 red-edge spectral band combinations yielded the highest classification accuracy (overall accuracy of 83.6% with SSLES) compared to the inclusion of other band combinations. The results of this study indicate that the utilisation of an ES in the labelling process of SSL improves the reliability of the process and provides robust performance for the classification of vegetation cover.
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Chen Q, Zheng B, Chenu K, Hu P, Chapman SC. Unsupervised Plot-Scale LAI Phenotyping via UAV-Based Imaging, Modelling, and Machine Learning. PLANT PHENOMICS 2022; 2022:9768253. [PMID: 35935677 PMCID: PMC9317541 DOI: 10.34133/2022/9768253] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 05/25/2022] [Indexed: 11/14/2022]
Abstract
High-throughput phenotyping has become the frontier to accelerate breeding through linking genetics to crop growth estimation, which requires accurate estimation of leaf area index (LAI). This study developed a hybrid method to train the random forest regression (RFR) models with synthetic datasets generated by a radiative transfer model to estimate LAI from UAV-based multispectral images. The RFR models were evaluated on both (i) subsets from the synthetic datasets and (ii) observed data from two field experiments (i.e., Exp16, Exp19). Given the parameter ranges and soil reflectance are well calibrated in synthetic training data, RFR models can accurately predict LAI from canopy reflectance captured in field conditions, with systematic overestimation for LAI<2 due to background effect, which can be addressed by applying background correction on original reflectance map based on vegetation-background classification. Overall, RFR models achieved accurate LAI prediction from background-corrected reflectance for Exp16 (correlation coefficient (r) of 0.95, determination coefficient (R2) of 0.90~0.91, root mean squared error (RMSE) of 0.36~0.40 m2 m−2, relative root mean squared error (RRMSE) of 25~28%) and less accurate for Exp19 (r =0.80~0.83, R2 = 0.63~0.69, RMSE of 0.84~0.86 m2 m−2, RRMSE of 30~31%). Additionally, RFR models correctly captured spatiotemporal variation of observed LAI as well as identified variations for different growing stages and treatments in terms of genotypes and management practices (i.e., planting density, irrigation, and fertilization) for two experiments. The developed hybrid method allows rapid, accurate, nondestructive phenotyping of the dynamics of LAI during vegetative growth to facilitate assessments of growth rate including in breeding program assessments.
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Affiliation(s)
- Qiaomin Chen
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, QLD, Australia
- Agriculture and Food, CSIRO, Queensland Bioscience Precinct, St Lucia, QLD, Australia
| | - Bangyou Zheng
- Agriculture and Food, CSIRO, Queensland Bioscience Precinct, St Lucia, QLD, Australia
| | - Karine Chenu
- The University of Queensland, Queensland Alliance for Agriculture and Food Innovation, Toowoomba, QLD, Australia
| | - Pengcheng Hu
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, QLD, Australia
- Agriculture and Food, CSIRO, Queensland Bioscience Precinct, St Lucia, QLD, Australia
| | - Scott C. Chapman
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, QLD, Australia
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Wheat growth monitoring and yield estimation based on remote sensing data assimilation into the SAFY crop growth model. Sci Rep 2022; 12:5473. [PMID: 35361910 PMCID: PMC8971471 DOI: 10.1038/s41598-022-09535-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 03/22/2022] [Indexed: 01/01/2023] Open
Abstract
Crop growth monitoring and yield estimate information can be obtained via appropriate metrics such as the leaf area index (LAI) and biomass. Such information is crucial for guiding agricultural production, ensuring food security, and maintaining sustainable agricultural development. Traditional methods of field measurement and monitoring typically have low efficiency and can only give limited untimely information. Alternatively, methods based on remote sensing technologies are fast, objective, and nondestructive. Indeed, remote sensing data assimilation and crop growth modeling represent an important trend in crop growth monitoring and yield estimation. In this study, we assimilate the leaf area index retrieved from Sentinel-2 remote sensing data for crop growth model of the simple algorithm for yield estimation (SAFY) in wheat. The SP-UCI optimization algorithm is used for fine-tuning for several SAFY parameters, namely the emergence date (D0), the effective light energy utilization rate (ELUE), and the senescence temperature threshold (STT) which is indicative of biological aging. These three sensitive parameters are set in order to attain the global minimum of an error function between the SAFY model predicted values and the LAI inversion values. This assimilation of remote sensing data into the crop growth model facilitates the LAI, biomass, and yield estimation. The estimation results were validated using data collected from 48 experimental plots during 2014 and 2015. For the 2014 data, the results showed coefficients of determination (R2) of the LAI, biomass and yield of 0.73, 0.83 and 0.49, respectively, with corresponding root-mean-squared error (RMSE) values of 0.72, 1.13 t/ha and 1.14 t/ha, respectively. For the 2015 data, the estimated R2 values of the LAI, biomass, and yield were 0.700, 0.85, and 0.61, respectively, with respective RMSE values of 0.83, 1.22 t/ha, and 1.39 t/ha, respectively. The estimated values were found to be in good agreement with the measured ones. This shows high applicability of the proposed data assimilation scheme in crop monitoring and yield estimation. As well, this scheme provides a reference for the assimilation of remote sensing data into crop growth models for regional crop monitoring and yield estimation.
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Abstract
This paper systematically reviews the potential of the Sentinel-2 (A and B) in assessing drought. Research findings, including the IPCC reports, highlighted the increasing trend in drought over the decades and the need for a better understanding and assessment of this phenomenon. Continuous monitoring of the Earth’s surface is an efficient method for predicting and identifying the early warnings of drought, which enables us to prepare and plan the mitigation procedures. Considering the spatial, temporal, and spectral characteristics, the freely available Sentinel-2 data products are a promising option in this area of research, compared to Landsat and MODIS. This paper evaluates the recent developments in this field induced by the launch of Sentinel-2, as well as the comparison with other existing data products. The objective of this paper is to evaluate the potential of Sentinel-2 in assessing drought through vegetation characteristics, soil moisture, evapotranspiration, surface water including wetland, and land use and land cover analysis. Furthermore, this review also addresses and compares various data fusion methods and downscaling methods applied to Sentinel-2 for retrieving the major bio-geophysical variables used in the analysis of drought. Additionally, the limitations of Sentinel-2 in its direct applicability to drought studies are also evaluated.
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Dube T, Shoko C, Gara TW. Remote sensing of aboveground grass biomass between protected and non‐protected areas in savannah rangelands. Afr J Ecol 2021. [DOI: 10.1111/aje.12861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Timothy Dube
- Institute for Water Studies, Department of Earth Sciences University of the Western Cape Robert Sobukwe Bellville South Africa
| | - Cletah Shoko
- Division of Geography, School of Geography, Archaeology and Environmental Studies University of Witwatersrand Johannesburg South Africa
| | - Tawanda W. Gara
- Department of Geography and Environmental Science University of Zimbabwe Harare Zimbabwe
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Exploring the Impact of Noise on Hybrid Inversion of PROSAIL RTM on Sentinel-2 Data. REMOTE SENSING 2021. [DOI: 10.3390/rs13040648] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Remote sensing (RS) of biophysical variables plays a vital role in providing the information necessary for understanding spatio-temporal dynamics in ecosystems. The hybrid approach to retrieve biophysical variables from RS by combining Machine Learning (ML) algorithms with surrogate data generated by Radiative Transfer Models (RTM). The susceptibility of the ill-posed solutions to noise currently constrains further application of hybrid approaches. Here, we explored how noise affects the performance of ML algorithms for biophysical trait retrieval. We focused on synthetic Sentinel-2 (S2) data generated using the PROSAIL RTM and four commonly applied ML algorithms: Gaussian Processes (GPR), Random Forests (RFR), and Artificial Neural Networks (ANN) and Multi-task Neural Networks (MTN). After identifying which biophysical variables can be retrieved from S2 using a Global Sensitivity Analysis, we evaluated the performance loss of each algorithm using the Mean Absolute Percentage Error (MAPE) with increasing noise levels. We found that, for S2 data, Carotenoid concentrations are uniquely dependent on band 2, Chlorophyll is almost exclusively dependent on the visible ranges, and Leaf Area Index, water, and dry matter contents are mostly dependent on infrared bands. Without added noise, GPR was the best algorithm (<0.05%), followed by the MTN (<3%) and ANN (<5%), with the RFR performing very poorly (<50%). The addition of noise critically affected the performance of all algorithms (>20%) even at low levels of added noise (≈5%). Overall, both neural networks performed significantly better than GPR and RFR when noise was added with the MTN being slightly better when compared to the ANN. Our results imply that the performance of the commonly used algorithms in hybrid-RTM inversion are pervasively sensitive to noise. The implication is that more advanced models or approaches are necessary to minimize the impact of noise to improve near real-time and accurate RS monitoring of biophysical trait retrieval.
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Development of Machine Learning Models to Predict Compressed Sward Height in Walloon Pastures Based on Sentinel-1, Sentinel-2 and Meteorological Data Using Multiple Data Transformations. REMOTE SENSING 2021. [DOI: 10.3390/rs13030408] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Accurate information about the available standing biomass on pastures is critical for the adequate management of grazing and its promotion to farmers. In this paper, machine learning models are developed to predict available biomass expressed as compressed sward height (CSH) from readily accessible meteorological, optical (Sentinel-2) and radar satellite data (Sentinel-1). This study assumed that combining heterogeneous data sources, data transformations and machine learning methods would improve the robustness and the accuracy of the developed models. A total of 72,795 records of CSH with a spatial positioning, collected in 2018 and 2019, were used and aggregated according to a pixel-like pattern. The resulting dataset was split into a training one with 11,625 pixellated records and an independent validation one with 4952 pixellated records. The models were trained with a 19-fold cross-validation. A wide range of performances was observed (with mean root mean square error (RMSE) of cross-validation ranging from 22.84 mm of CSH to infinite-like values), and the four best-performing models were a cubist, a glmnet, a neural network and a random forest. These models had an RMSE of independent validation lower than 20 mm of CSH at the pixel-level. To simulate the behavior of the model in a decision support system, performances at the paddock level were also studied. These were computed according to two scenarios: either the predictions were made at a sub-parcel level and then aggregated, or the data were aggregated at the parcel level and the predictions were made for these aggregated data. The results obtained in this study were more accurate than those found in the literature concerning pasture budgeting and grassland biomass evaluation. The training of the 124 models resulting from the described framework was part of the realization of a decision support system to help farmers in their daily decision making.
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Analysis of Combining SAR and Optical Optimal Parameters to Classify Typhoon-Invasion Lodged Rice: A Case Study Using the Random Forest Method. SENSORS 2020; 20:s20247346. [PMID: 33371381 PMCID: PMC7767387 DOI: 10.3390/s20247346] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 12/10/2020] [Accepted: 12/16/2020] [Indexed: 12/03/2022]
Abstract
Lodging, a commonly occurring rice crop disaster, seriously reduces rice quality and production. Monitoring rice lodging after a typhoon event is essential for evaluating yield loss and formulating suitable remedial policies. The availability of Sentinel-1 and Sentinel-2 open-access remote sensing data provides large-scale information with a short revisit time to be freely accessed. Data from these sources have been previously shown to identify lodged crops. In this study, therefore, Sentinel-1 and Sentinel-2 data after a typhoon event were combined to enable monitoring of lodging rice to be quickly undertaken. In this context, the sensitivity of synthetic aperture radar (SAR) features (SF) and spectral indices (SI) extracted from Sentinel-1 and Sentinel-2 to lodged rice were analyzed, and a model was constructed for selecting optimal sensitive parameters for lodging rice (OSPL). OSPL has high sensitivity to lodged rice and strong ability to distinguish lodged rice from healthy rice. After screening, Band 11 (SWIR-1) and Band 12 (SWIR-2) were identified as optimal spectral indices (OSI), and VV, VV + VH and Shannon Entropy were optimal SAR features (OSF). Three classification results of lodging rice were acquired using the Random Forest classification (RFC) method based on OSI, OSF and integrated OSI–OSF stack images, respectively. Results indicate that an overall level of accuracy of 91.29% was achieved with the combination of SAR and optical optimal parameters. The result was 2.91% and 6.05% better than solely using optical or SAR processes, respectively.
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Special Issue “Hyperspectral Remote Sensing of Agriculture and Vegetation”. REMOTE SENSING 2020. [DOI: 10.3390/rs12213665] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
The advent of up-to-date hyperspectral technologies, and their increasing performance both spectrally and spatially, allows for new and exciting studies and practical applications in agriculture (soils and crops) and vegetation mapping and monitoring atregional (satellite platforms) andwithin-field (airplanes, drones and ground-based platforms) scales. Within this context, the special issue has included eleven international research studies using different hyperspectral datasets (from the Visible to the Shortwave Infrared spectral region) for agricultural soil, crop and vegetation modelling, mapping, and monitoring. Different classification methods (Support Vector Machine, Random Forest, Artificial Neural Network, Decision Tree) and crop canopy/leaf biophysical parameters (e.g., chlorophyll content) estimation methods (partial least squares and multiple linear regressions) have been evaluated. Further, drone-based hyperspectral mapping by combining bidirectional reflectance distribution function (BRDF) model for multi-angle remote sensing and object-oriented classification methods are also examined. A review article on the recent advances of hyperspectral imaging technology and applications in agriculture is also included in this issue. The special issue is intended to help researchers and farmers involved in precision agriculture technology and practices to a better comprehension of strengths and limitations of the application of hyperspectral measurements for agriculture and vegetation monitoring. The studies published herein can be used by the agriculture and vegetation research and management communities to improve the characterization and evaluation of biophysical variables and processes, as well as for a more accurate prediction of plant nutrient using existing and forthcoming hyperspectral remote sensing technologies.
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Estimating Crop LAI Using Spectral Feature Extraction and the Hybrid Inversion Method. REMOTE SENSING 2020. [DOI: 10.3390/rs12213534] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The leaf area index (LAI) is an essential indicator used in crop growth monitoring. In the study, a hybrid inversion method, which combined a physical model with a statistical method, was proposed to estimate the crop LAI. The simulated compact high-resolution imaging spectrometer (CHRIS) canopy spectral crop reflectance datasets were generated using the PROSAIL model (the coupling of PROSPECT leaf optical properties model and Scattering by Arbitrarily Inclined Leaves model) and the CHRIS band response function. Partial least squares (PLS) was then used to reduce the dimension of the simulated spectral data. Using the principal components (PCs) of PLS as the model inputs, the hybrid inversion models were built using various modeling algorithms, including the backpropagation artificial neural network (BP-ANN), least squares support vector regression (LS-SVR), and random forest regression (RFR). Finally, remote sensing mapping of the CHRIS data was achieved with the hybrid model to test the inversion accuracy of LAI estimates. The validation result yielded an accuracy of R2 = 0.939 and normalized root-mean-square error (NRMSE) = 6.474% for the PLS_RFR model, which indicated that the crops LAI could be estimated accurately by using spectral feature extraction and a hybrid inversion strategy. The results showed that the model based on principal components extracted by PLS had a good estimation accuracy and noise immunity and was the preferred method for LAI estimation. Furthermore, the comparative analysis results of various datasets showed that prior knowledge could improve the precision of the retrieved LAI, and using this information to constrain parameters (e.g., chlorophyll content or LAI), which make important contributions to the spectra, is the key to this improvement. In addition, among the PLS, BP-ANN, LS-SVR, and RFR methods, RFR was the optimal modeling algorithm in the paper, as indicated by the high R2 and low NRMSE in various datasets.
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Estimation of Gross Primary Productivity (GPP) Phenology of a Short-Rotation Plantation Using Remotely Sensed Indices Derived from Sentinel-2 Images. REMOTE SENSING 2020. [DOI: 10.3390/rs12132104] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This study aimed to understand which vegetation indices (VIs) are an ideal proxy for describing phenology and interannual variability of Gross Primary Productivity (GPP) in short-rotation coppice (SRC) plantations. Canopy structure- and chlorophyll-sensitive VIs derived from Sentinel-2 images were used to estimate the start and end of the growing season (SOS and EOS, respectively) during the period 2016–2018, for an SRC poplar (Populus spp.) plantation in Lochristi (Belgium). Three different filtering methods (Savitzky–Golay (SavGol), polynomial (Polyfit) and Harmonic Analysis of Time Series (HANTS)) and five SOS- and EOS threshold methods (first derivative function, 10% and 20% percentages and 10% and 20% percentiles) were applied to identify the optimal methods for the determination of phenophases. Our results showed that the MEdium Resolution Imaging Spectrometer (MERIS) Terrestrial Chlorophyll Index (MTCI) had the best fit with GPP phenology, as derived from eddy covariance measurements, in identifying SOS- and EOS-dates. For SOS, the performance was only slightly better than for several other indices, whereas for EOS, MTCI performed markedly better. The relationship between SOS/EOS derived from GPP and VIs varied interannually. MTCI described best the seasonal pattern of the SRC plantation’s GPP (R2 = 0.52 when combining all three years). However, during the extreme dry year 2018, the Chlorophyll Red Edge Index performed slightly better in reproducing growing season GPP variability than MTCI (R2 = 0.59; R2 = 0.49, respectively). Regarding smoothing functions, Polyfit and HANTS methods showed the best (and very similar) performances. We further found that defining SOS as the date at which the 10% or 20% percentile occurred, yielded the best agreement between the VIs and the GPP; while for EOS the dates of the 10% percentile threshold came out as the best.
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Berger K, Verrelst J, Féret JB, Wang Z, Wocher M, Strathmann M, Danner M, Mauser W, Hank T. Crop nitrogen monitoring: Recent progress and principal developments in the context of imaging spectroscopy missions. REMOTE SENSING OF ENVIRONMENT 2020; 242:111758. [PMID: 36082364 PMCID: PMC7613361 DOI: 10.1016/j.rse.2020.111758] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Nitrogen (N) is considered as one of the most important plant macronutrients and proper management of N therefore is a pre-requisite for modern agriculture. Continuous satellite-based monitoring of this key plant trait would help to understand individual crop N use efficiency and thus would enable site-specific N management. Since hyperspectral imaging sensors could provide detailed measurements of spectral signatures corresponding to the optical activity of chemical constituents, they have a theoretical advantage over multi-spectral sensing for the detection of crop N. The current study aims to provide a state-of-the-art overview of crop N retrieval methods from hyperspectral data in the agricultural sector and in the context of future satellite imaging spectroscopy missions. Over 400 studies were reviewed for this purpose, identifying those estimating mass-based N (N concentration, N%) and area-based N (N content, Narea) using hyperspectral remote sensing data. Retrieval methods of the 125 studies selected in this review can be grouped into: (1) parametric regression methods, (2) linear nonparametric regression methods or chemometrics, (3) nonlinear nonparametric regression methods or machine learning regression algorithms, (4) physically-based or radiative transfer models (RTM), (5) use of alternative data sources (sun-induced fluorescence, SIF) and (6) hybrid or combined techniques. Whereas in the last decades methods for estimation of Narea and N% from hyperspectral data have been mainly based on simple parametric regression algorithms, such as narrowband vegetation indices, there is an increasing trend of using machine learning, RTM and hybrid techniques. Within plants, N is invested in proteins and chlorophylls stored in the leaf cells, with the proteins being the major nitrogen-containing biochemical constituent. However, in most studies, the relationship between N and chlorophyll content was used to estimate crop N, focusing on the visible-near infrared (VNIR) spectral domains, and thus neglecting protein-related N and reallocation of nitrogen to non-photosynthetic compartments. Therefore, we recommend exploiting the estimation of nitrogen via the proxy of proteins using hyperspectral data and in particular the short-wave infrared (SWIR) spectral domain. We further strongly encourage a standardization of nitrogen terminology, distinguishing between N% and Narea. Moreover, the exploitation of physically-based approaches is highly recommended combined with machine learning regression algorithms, which represents an interesting perspective for future research in view of new spaceborne imaging spectroscopy sensors.
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Affiliation(s)
- Katja Berger
- Department of Geography, Ludwig-Maximilians-Universitaet München, Luisenstr 37, 80333 Munich, Germany
| | - Jochem Verrelst
- Image Processing Laboratory (IPL), Parc Científic, Universitat de València, Paterna, València 46980, Spain
| | - Jean-Baptiste Féret
- TETIS, INRAE, AgroParisTech, CIRAD, CNRS, Université Montpellier, Montpellier, France
| | - Zhihui Wang
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, 1630 Linden Drive, Madison, WI 53706, USA
| | - Matthias Wocher
- Department of Geography, Ludwig-Maximilians-Universitaet München, Luisenstr 37, 80333 Munich, Germany
| | - Markus Strathmann
- Department of Geography, Ludwig-Maximilians-Universitaet München, Luisenstr 37, 80333 Munich, Germany
| | - Martin Danner
- Department of Geography, Ludwig-Maximilians-Universitaet München, Luisenstr 37, 80333 Munich, Germany
| | - Wolfram Mauser
- Department of Geography, Ludwig-Maximilians-Universitaet München, Luisenstr 37, 80333 Munich, Germany
| | - Tobias Hank
- Department of Geography, Ludwig-Maximilians-Universitaet München, Luisenstr 37, 80333 Munich, Germany
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Estimating Forest Stock Volume in Hunan Province, China, by Integrating In Situ Plot Data, Sentinel-2 Images, and Linear and Machine Learning Regression Models. REMOTE SENSING 2020. [DOI: 10.3390/rs12010186] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The forest stock volume (FSV) is one of the key indicators in forestry resource assessments on local, regional, and national scales. To date, scaling up in situ plot-scale measurements across landscapes is still a great challenge in the estimation of FSVs. In this study, Sentinel-2 imagery, the Google Earth Engine (GEE) cloud computing platform, three base station joint differential positioning technology (TBSJDPT), and three algorithms were used to build an FSV model for forests located in Hunan Province, southern China. The GEE cloud computing platform was used to extract the imagery variables from the Sentinel-2 imagery pixels. The TBSJDPT was put forward and used to provide high-precision positions of the sample plot data. The random forests (RF), support vector regression (SVR), and multiple linear regression (MLR) algorithms were used to estimate the FSV. For each pixel, 24 variables were extracted from the Sentinel-2 images taken in 2017 and 2018. The RF model performed the best in both the training phase (i.e., R2 = 0.91, RMSE = 35.13 m3 ha−1, n = 321) and in the test phase (i.e., R2 = 0.58, RMSE = 65.03 m3 ha−1, and n = 138). This model was followed by the SVR model (R2 = 0.54, RMSE = 65.60 m3 ha−1, n = 321 in training; R2 = 0.54, RMSE = 66.00 m3 ha−1, n = 138 in testing), which was slightly better than the MLR model (R2 = 0.38, RMSE = 75.74 m3 ha−1, and n = 321 in training; R2 = 0.49, RMSE = 70.22 m3 ha−1, and n = 138 in testing) in both the training phase and test phase. The best predictive band was Red-Edge 1 (B5), which performed well both in the machine learning methods and in the MLR method. The Blue band (B2), Green band (B3), Red band (B4), SWIR2 band (B12), and vegetation indices (TCW, NDVI_B5, and TCB) were used in the machine learning models, and only one vegetation index (MSI) was used in the MLR model. We mapped the FSV distribution in Hunan Province (3.50 × 108 m3) based on the RF model; it reached a total accuracy of 63.87% compared with the official forest report in 2017 (5.48 × 108 m3). The results from this study will help develop and improve satellite-based methods to estimate FSVs on local, regional and national scales.
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Improving Field-Scale Wheat LAI Retrieval Based on UAV Remote-Sensing Observations and Optimized VI-LUTs. REMOTE SENSING 2019. [DOI: 10.3390/rs11202456] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Leaf area index (LAI) is a key biophysical parameter for monitoring crop growth status, predicting crop yield, and quantifying crop variability in agronomic applications. Mapping the LAI at the field scale using multispectral cameras onboard unmanned aerial vehicles (UAVs) is a promising precision-agriculture application with specific requirements: The LAI retrieval method should be (1) robust so that crop LAI can be estimated with similar accuracy and (2) easy to use so that it can be applied to the adjustment of field management practices. In this study, three UAV remote-sensing missions (UAVs with Micasense RedEdge-M and Cubert S185 cameras) were carried out over six experimental plots from 2018 to 2019 to investigate the performance of reflectance-based lookup tables (LUTs) and vegetation index (VI)-based LUTs generated from the PROSAIL model for wheat LAI retrieval. The effects of the central wavelengths and bandwidths for the VI calculations on the LAI retrieval were further examined. We found that the VI-LUT strategy was more robust and accurate than the reflectance-LUT strategy. The differences in the LAI retrieval accuracy among the four VI-LUTs were small, although the improved modified chlorophyll absorption ratio index-lookup table (MCARI2-LUT) and normalized difference vegetation index-lookup table (NDVI-LUT) performed slightly better. We also found that both of the central wavelengths and bandwidths of the VIs had effects on the LAI retrieval. The VI-LUTs with optimized central wavelengths (red = 612 nm, near-infrared (NIR) = 756 nm) and narrow bandwidths (~4 nm) improved the wheat LAI retrieval accuracy (R2 ≥ 0.75). The results of this study provide an alternative method for retrieving crop LAI, which is robust and easy use for precision-agriculture applications and may be helpful for designing UAV multispectral cameras for agricultural monitoring.
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Validating the Predictive Power of Statistical Models in Retrieving Leaf Dry Matter Content of a Coastal Wetland from a Sentinel-2 Image. REMOTE SENSING 2019. [DOI: 10.3390/rs11161936] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Leaf dry matter content (LDMC), the ratio of leaf dry mass to its fresh mass, is a key plant trait, which is an indicator for many critical aspects of plant growth and survival. Accurate and fast detection of the spatiotemporal dynamics of LDMC would help understanding plants’ carbon assimilation and relative growth rate, and may then be used as an input for vegetation process models to monitor ecosystems. Satellite remote sensing is an effective tool for predicting such plant traits non-destructively. However, studies on the applicability of remote sensing for LDMC retrieval are scarce. Only a few studies have looked into the practicality of using remotely sensed data for the prediction of LDMC in a forest ecosystem. In this study, we assessed the performance of partial least squares regression (PLSR) plus 11 widely used vegetation indices (VIs), calculated based on different combinations of Sentinel-2 bands, in predicting LDMC in a coastal wetland. The accuracy of the selected methods was validated using LDMC, destructively measured in 50 randomly distributed sample plots at the study site in Schiermonnikoog, the Netherlands. The PLSR applied to canopy reflectance of Sentinel-2 bands resulted in accurate prediction of LDMC (coefficient of determination (R2) = 0.71, RMSE = 0.033). PLSR applied to the studied VIs provided an R2 of 0.70 and RMSE of 0.033. Four vegetation indices (enhanced vegetation index(EVI), specific leaf area vegetation index (SLAVI), simple ratio vegetation index (SRVI), and visible atmospherically resistant index (VARI)) computed using band 3 (green) and band 11 of the Sentinel-2 performed equally well and achieved a good measure of accuracy (R2 = 0.67, RMSE = 0.034). Our findings demonstrate the feasibility of using Sentinel-2 surface reflectance data to map LDMC in a coastal wetland.
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Combining ASNARO-2 XSAR HH and Sentinel-1 C-SAR VH/VV Polarization Data for Improved Crop Mapping. REMOTE SENSING 2019. [DOI: 10.3390/rs11161920] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The Advanced Satellite with New system ARchitecture for Observation-2 (ASNARO-2), which carries the X-band Synthetic Aperture Radar (XSAR), was launched on 17 January 2018 and is expected to be used to supplement data provided by larger satellites. Land cover classification is one of the most common applications of remote sensing, and the results provide a reliable resource for agricultural field management and estimating potential harvests. This paper describes the results of the first experiments in which ASNARO-2 XSAR data were applied for agricultural crop classification. In previous studies, Sentinel-1 C-SAR data have been widely utilized to identify crop types. Comparisons between ASNARO-2 XSAR and Sentinel-1 C-SAR using data obtained in June and August 2018 were conducted to identify five crop types (beans, beetroot, maize, potato, and winter wheat), and the combination of these data was also tested. To assess the potential for accurate crop classification, some radar vegetation indices were calculated from the backscattering coefficients for two dates. In addition, the potential of each type of SAR data was evaluated using four popular supervised learning models: Support vector machine (SVM), random forest (RF), multilayer feedforward neural network (FNN), and kernel-based extreme learning machine (KELM). The combination of ASNARO-2 XSAR and Sentinel-1 C-SAR data was effective, and overall classification accuracies of 85.4 ± 1.8% were achieved using SVM.
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Comparison of Landsat-8 and Sentinel-2 Data for Estimation of Leaf Area Index in Temperate Forests. REMOTE SENSING 2019. [DOI: 10.3390/rs11101160] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
With the launch of the Sentinel-2 satellites, a European capacity has been created to ensure continuity of Landsat and SPOT observations. In contrast to previous sensors, Sentinel-2′s multispectral imager (MSI) incorporates three additional spectral bands in the red-edge (RE) region, which are expected to improve the mapping of vegetation traits. The objective of this study was to compare Sentinel-2 MSI and Landsat-8 OLI data for the estimation of leaf area index (LAI) in temperate, deciduous broadleaf forests. We used hemispherical photography to estimate effective LAI at 36 field plots. We then built and compared simple and multiple linear regression models between field-based LAI and spectral bands and vegetation indices derived from Landsat-8 and Sentinel-2, respectively. Our main findings are that Sentinel-2 predicts LAI with comparable accuracy to Landsat-8. The best Landsat-8 models predicted LAI with a root-mean-square error (RMSE) of 0.877, and the best Sentinel-2 model achieved an RMSE of 0.879. In addition, Sentinel-2′s RE bands and RE-based indices did not improve LAI prediction. Thirdly, LAI models showed a high sensitivity to understory vegetation when tree cover was sparse. According to our findings, Sentinel-2 is capable of delivering data continuity at high temporal resolution.
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