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Rafferty A, Vennes B, Bain A, Preston TC. Optical trapping and light scattering in atmospheric aerosol science. Phys Chem Chem Phys 2023; 25:7066-7089. [PMID: 36852581 DOI: 10.1039/d2cp05301b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Abstract
Aerosol particles are ubiquitous in the atmosphere, and currently contribute a large uncertainty to climate models. Part of the endeavour to reduce this uncertainty takes the form of improving our understanding of aerosol at the microphysical level, thus enabling chemical and physical processes to be more accurately represented in larger scale models. In addition to modeling efforts, there is a need to develop new instruments and methodologies to interrogate the physicochemical properties of aerosol. This perspective presents the development, theory, and application of optical trapping, a powerful tool for single particle investigations of aerosol. After providing an overview of the role of aerosol in Earth's atmosphere and the microphysics of these particles, we present a brief history of optical trapping and a more detailed look at its application to aerosol particles. We also compare optical trapping to other single particle techniques. Understanding the interaction of light with single particles is essential for interpreting experimental measurements. In the final part of this perspective, we provide the relevant formalism for understanding both elastic and inelastic light scattering for single particles. The developments discussed here go beyond Mie theory and include both how particle and beam shape affect spectra. Throughout the entirety of this work, we highlight numerous references and examples, mostly from the last decade, of the application of optical trapping to systems that are relevant to the atmospheric aerosol.
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Affiliation(s)
| | - Benjamin Vennes
- Department of Atmospheric and Oceanic Sciences, McGill University, Montreal, Quebec, Canada.
| | - Alison Bain
- School of Chemistry, University of Bristol, Bristol, UK
| | - Thomas C Preston
- Department of Atmospheric and Oceanic Sciences, McGill University, Montreal, Quebec, Canada. .,Department of Chemistry, McGill University, Montreal, Quebec, Canada
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2
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Ekimova M, Hoffmann F, Bekçioğlu-Neff G, Rafferty A, Kornilov O, Nibbering ETJ, Sebastiani D. Ultrafast Proton Transport between a Hydroxy Acid and a Nitrogen Base along Solvent Bridges Governed by the Hydroxide/Methoxide Transfer Mechanism. J Am Chem Soc 2019; 141:14581-14592. [PMID: 31446754 PMCID: PMC8168916 DOI: 10.1021/jacs.9b03471] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
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Aqueous
proton transport plays a key role in acid–base neutralization
and energy transport through biological membranes and hydrogen fuel
cells. Extensive experimental and theoretical studies have resulted
in a highly detailed elucidation of one of the underlying microscopic
mechanisms for aqueous excess proton transport, known as the von Grotthuss
mechanism, involving different hydrated proton configurations with
associated high fluxional structural dynamics. Hydroxide transport,
with approximately 2-fold-lower bulk diffusion rates compared to those
of excess protons, has received much less attention. We present femtosecond
UV/IR pump–probe experiments and ab initio molecular dynamics
simulations of different proton transport pathways of bifunctional
photoacid 7-hydroxyquinoline (7HQ) in water/methanol mixtures. For
7HQ solvent-dependent photoacidity, free-energy–reactivity
correlation behavior and quantum mechanics/molecular mechanics (QM/MM)
trajectories point to a dominant OH–/CH3O– transport pathway for all water/methanol mixing
ratios investigated. Our joint ultrafast infrared spectroscopic and
ab initio molecular dynamics study provides conclusive evidence for
the hydrolysis/methanolysis acid–base neutralization pathway,
as formulated by Manfred Eigen half a century ago. Our findings on
the distinctly different acid–base reactivities for aromatic
hydroxyl and aromatic nitrogen functionalities suggest the usefulness
of further exploration of these free-energy–reactivity correlations
as a function of solvent polarity. Ultimately the determination of
solvent-dependent acidities will contribute to a better understanding
of proton-transport mechanisms at weakly polar surfaces and near polar
or ionic regions in transmembrane proton pump proteins or hydrogen
fuel cell materials.
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Affiliation(s)
- Maria Ekimova
- Max Born Institut für Nichtlineare Optik und Kurzzeitspektroskopie , Max Born Str. 2A , 12489 Berlin , Germany
| | - Felix Hoffmann
- Institut für Chemie , Martin-Luther-Universität Halle-Wittenberg , Von-Danckelmann-Platz 4 , 06120 Halle , Saale , Germany
| | - Gül Bekçioğlu-Neff
- Institut für Chemie , Martin-Luther-Universität Halle-Wittenberg , Von-Danckelmann-Platz 4 , 06120 Halle , Saale , Germany
| | - Aidan Rafferty
- Max Born Institut für Nichtlineare Optik und Kurzzeitspektroskopie , Max Born Str. 2A , 12489 Berlin , Germany
| | - Oleg Kornilov
- Max Born Institut für Nichtlineare Optik und Kurzzeitspektroskopie , Max Born Str. 2A , 12489 Berlin , Germany
| | - Erik T J Nibbering
- Max Born Institut für Nichtlineare Optik und Kurzzeitspektroskopie , Max Born Str. 2A , 12489 Berlin , Germany
| | - Daniel Sebastiani
- Institut für Chemie , Martin-Luther-Universität Halle-Wittenberg , Von-Danckelmann-Platz 4 , 06120 Halle , Saale , Germany
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Morten MJ, Lopez SG, Steinmark IE, Rafferty A, Magennis SW. Stacking-induced fluorescence increase reveals allosteric interactions through DNA. Nucleic Acids Res 2019; 46:11618-11626. [PMID: 30277520 PMCID: PMC6265455 DOI: 10.1093/nar/gky887] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 09/19/2018] [Indexed: 12/14/2022] Open
Abstract
From gene expression to nanotechnology, understanding and controlling DNA requires a detailed knowledge of its higher order structure and dynamics. Here we take advantage of the environment-sensitive photoisomerization of cyanine dyes to probe local and global changes in DNA structure. We report that a covalently attached Cy3 dye undergoes strong enhancement of fluorescence intensity and lifetime when stacked in a nick, gap or overhang region in duplex DNA. This is used to probe hybridization dynamics of a DNA hairpin down to the single-molecule level. We also show that varying the position of a single abasic site up to 20 base pairs away modulates the dye–DNA interaction, indicative of through-backbone allosteric interactions. The phenomenon of stacking-induced fluorescence increase (SIFI) should find widespread use in the study of the structure, dynamics and reactivity of nucleic acids.
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Affiliation(s)
- Michael J Morten
- School of Chemistry, WestCHEM, University of Glasgow, Joseph Black Building, University Avenue, Glasgow G12 8QQ, UK
| | - Sergio G Lopez
- School of Chemistry, WestCHEM, University of Glasgow, Joseph Black Building, University Avenue, Glasgow G12 8QQ, UK
| | - I Emilie Steinmark
- School of Chemistry, WestCHEM, University of Glasgow, Joseph Black Building, University Avenue, Glasgow G12 8QQ, UK
| | - Aidan Rafferty
- School of Chemistry, WestCHEM, University of Glasgow, Joseph Black Building, University Avenue, Glasgow G12 8QQ, UK
| | - Steven W Magennis
- School of Chemistry, WestCHEM, University of Glasgow, Joseph Black Building, University Avenue, Glasgow G12 8QQ, UK
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4
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Ekimova M, Hoffmann F, Bekcioglu-Neff G, Rafferty A, Nibbering ETJ, Sebastiani D. Ultrafast proton transport in water-methanol mixtures. EPJ Web Conf 2019. [DOI: 10.1051/epjconf/201920509004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Femtosecond UV/IR pump-probe experiments and ab initio molecular dynamics simulations of 7-hydroxyquinoline in water-methanol mixtures demonstrate an unexpectedly dominant OH-/CH3O- transport pathway but consistent with a solvent-dependent photoacidity free energy-reactivity correlation behaviour.
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5
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Rafferty A, Preston TC. Measuring the size and complex refractive index of an aqueous aerosol particle using electromagnetic heating and cavity-enhanced Raman scattering. Phys Chem Chem Phys 2018; 20:17038-17047. [DOI: 10.1039/c8cp02966k] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
We describe a dual-beam optical trap that can simultaneously determine the complex refractive index and the radius of weakly absorbing aerosol particles.
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Affiliation(s)
- Aidan Rafferty
- Department of Atmospheric and Oceanic Sciences and Department of Chemistry
- McGill University
- Montreal
- Canada
| | - Thomas C. Preston
- Department of Atmospheric and Oceanic Sciences and Department of Chemistry
- McGill University
- Montreal
- Canada
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Lin S, Rafferty A, Nguyen J, Gray V, Nguyen-Rodriguez S, Barrack M. Parental Perceptions of Snacking Environments in Youth Sports. J Acad Nutr Diet 2017. [DOI: 10.1016/j.jand.2017.06.269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Dalton CE, Quinn SD, Rafferty A, Morten MJ, Gardiner JM, Magennis SW. Single-Molecule Fluorescence Detection of a Synthetic Heparan Sulfate Disaccharide. Chemphyschem 2016; 17:3442-3446. [PMID: 27538128 PMCID: PMC5111599 DOI: 10.1002/cphc.201600750] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Indexed: 11/11/2022]
Abstract
The first single-molecule fluorescence detection of a structurally-defined synthetic carbohydrate is reported: a heparan sulfate (HS) disaccharide fragment labeled with Alexa488. Single molecules have been measured whilst freely diffusing in solution and controlled encapsulation in surface-tethered lipid vesicles has allowed extended observations of carbohydrate molecules down to the single-molecule level. The diverse and dynamic nature of HS-protein interactions means that new tools to investigate pure HS fragments at the molecular level would significantly enhance our understanding of HS. This work is a proof-of-principle demonstration of the feasibility of single-molecule studies of synthetic carbohydrates which offers a new approach to the study of pure glycosaminoglycan (GAG) fragments.
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Affiliation(s)
- Charlotte E Dalton
- The School of Chemistry and Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Steven D Quinn
- WestCHEM, School of Chemistry, University of Glasgow, Joseph Black Building, University Avenue, Glasgow, G12 8QQ, UK
| | - Aidan Rafferty
- WestCHEM, School of Chemistry, University of Glasgow, Joseph Black Building, University Avenue, Glasgow, G12 8QQ, UK
| | - Michael J Morten
- WestCHEM, School of Chemistry, University of Glasgow, Joseph Black Building, University Avenue, Glasgow, G12 8QQ, UK
| | - John M Gardiner
- The School of Chemistry and Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Steven W Magennis
- WestCHEM, School of Chemistry, University of Glasgow, Joseph Black Building, University Avenue, Glasgow, G12 8QQ, UK
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Heightman M, Dullaghan D, Rafferty A, Jones E, Townes H, Gardiner L, Dzingai J, Nimoh-Bing C, Broomfield H, Fabris G, Dharmagunawardena R, Restrick L, Stern M. P26 Measuring the value of a consultant-led Community Respiratory (CORE) Multidisciplinary Team (MDT) in a deprived inner city area: Achieving parity in respiratory care for housebound sick patients: Abstract P26 Table 1. Thorax 2015. [DOI: 10.1136/thoraxjnl-2015-207770.163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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9
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Thio M, Dawson JA, Moss TJ, Galinsky R, Rafferty A, Hooper SB, Davis PG. Self-inflating bags versus T-piece resuscitator to deliver sustained inflations in a preterm lamb model. Arch Dis Child Fetal Neonatal Ed 2014; 99:F274-7. [PMID: 24646620 DOI: 10.1136/archdischild-2013-305239] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
OBJECTIVE In neonatal resuscitation, the use of a sustained inflation (SI) may facilitate lung aeration. Previous studies comparing different resuscitation devices have shown that one model of self-inflating bag (SIB) could not deliver an SI. We aimed to compare the delivery of an SI using four SIBs with that of a T-piece. STUDY DESIGN In intubated preterm lambs, we compared four models of SIB fitted with a positive end expiratory pressure (PEEP) valve to a T-piece using a gas flow of 8 L/min. Four operators aimed to deliver three SIs of 20 cm H₂O for 30 s. The study was repeated with the PEEP valve removed and again with no flow. We measured duration of SI, average inflation pressure (IP) and analysed the shape of the pressure curves. RESULTS 204 combinations were analysed. Mean (SD) duration of SI was Ambu 6(2)s, Laerdal 14(8)s, Parker Healthcare 5(1)s, Mayo Healthcare 33(2)s and T-piece 33(1)s. Mean (SD) average IP was Ambu 17(3)cm H₂O, Laerdal 17(3)cm H₂O, Parker Healthcare 12(5)cm H₂O, Mayo Healthcare 21(2)cm H₂O and T-piece 20(0)cm H₂O. Duration of SI and average IP was significantly different between SIBs (all p<0.001). The findings were substantially unchanged when PEEP valve and flow were removed (all p>0.05). Only the Mayo system delivered SIs with duration and average IP not significantly different from the T-piece (p>0.05). CONCLUSIONS The performance of the four SIBs tested varied considerably. Some are able to deliver an SI even in the absence of gas flow. This may be useful in a resource-limited setting with no gas supply.
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10
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Rafferty A, Tapper L, Strachan D, Raine C. Cochlear implantation in older patients: outcomes and comparisons. Rev Laryngol Otol Rhinol (Bord) 2013; 134:119-124. [PMID: 24974403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
OBJECTIVES A review of adults receiving cochlear implants (Cls) at the Yorkshire Cochlear Implant Service (YCIS) was performed to assess whether age affects use or outcomes. METHODS A retrospective analysis of all patients over the age of 50 implanted and habilitated at the YCIS was undertaken. Outcome measures included quality of life (QoL) questionnaires and speech perception tests: CUNY sentences and BKB sentences. Comparisons were made between patients implanted age 50 to 59 (A), 60 to 69 (B) and 70 and over (C). Patients with English as a second language and those implanted for less than 9 months were excluded. Data was analysed using a repeated measure regression model. RESULTS 80 adults were included; A, 31; B, 29; C, 20. Significant improvements were seen in speech perception scores in all groups from pre-implant to 3 months. No statistically significant difference was found between the 3 groups in any outcome measure. QoL scores overall showed increased independence and greater participation in social activities with all patients feeling their implant had been successful. DISCUSSION Increased life expectancy and availability of cochlear implants (Cls) has led to greater numbers of older patients being eligible for implantation. Our results show improved speech perception and QoL outcomes in all groups. The lack of statistically significant differences between age groups supports the benefits of Cls in the older population. Older age should not be a discriminating factor in candidacy for cochlear implantation and referral of older patients to implant centres should be encouraged.
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Abstract
AIM Screening for colorectal malignancy using faecal occult blood testing is established across the UK. In NHS Grampian the programme was introduced in 2007. Previous studies have reported no difference in anatomical locations of cancers detected by screening programmes compared with those in unscreened populations. This study aims to review the location of tumours detected in an established screening programme compared with those diagnosed through symptomatic presentation within the same population. METHOD All patients discussed at the regional multidisciplinary meeting between June 2007 and August 2011 were included. Data were collated prospectively from multidisciplinary team records while site of tumour was documented from radiology, endoscopy, operative and pathology reports. Comparative statistics (χ(2) ) were performed using spss 19. RESULTS Of 1487 patients included 255 were detected via the screening programme and 1232 from symptomatic presentation. More left sided tumours (splenic flexure to rectosigmoid) were detected via screening (P=0.005). Of non-screened patients (n=1232), 456 (37%) tumours were right sided (caecum to distal transverse colon), 419 (34%) were left sided and 357 (29%) were in the rectum. This compares with the screened group (n=255): right sided 74 (29%), left sided 113 (44%) and rectal 68 (27%). CONCLUSION More left sided tumours appear to be detected in screened patients compared with symptomatic presentation, contrary to previously published work. These results may be worthy of further consideration given the ongoing debate on the optimal means of screening.
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Affiliation(s)
- C D Mackay
- Department of General Surgery, Aberdeen Royal Infirmary, Aberdeen, UK.
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12
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Sylvester DC, Rafferty A, Bew S, Knight LC. The use of ice-lollies for pain relief post-paediatric tonsillectomy. A single-blinded, randomised, controlled trial. Clin Otolaryngol 2012; 36:566-70. [PMID: 22070741 DOI: 10.1111/j.1749-4486.2011.02410.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
OBJECTIVES To assess whether the use of ice-lollies after tonsillectomy with or without adenoidectomy in children aged 2-12 reduces pain in the immediate postoperative period. DESIGN A prospective, randomised, single-blinded study design consisting of two groups with an intention to treat analysis. SETTING Tertiary referral centre. PARTICIPANTS Children aged 2-12 undergoing tonsillectomy with or without adenoidectomy. MAIN OUTCOME MEASURES Pain assessment by nursing staff in the form of the validated modified Children's Hospital of Eastern Ontario Pain Scale at 15, 30 and 60 min and 4 h. RESULTS Ninety-two patients were recruited into the study with 46 allocated to receive an ice-lolly and 41 not to receive an ice-lolly after exclusion of those with incomplete data. The two groups were comparable for number, age, sex and diagnosis. The pain score at every time interval was lower in the group that had received the ice-lolly compared with the group that had not. This was statistically significant at 30 (P = 0.008) and 60 min (P = 0.049). CONCLUSION Our data suggest that ice-lollies are a cheap, effective and safe method of reducing postoperative pain up to one hour following paediatric tonsillectomy.
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Affiliation(s)
- D C Sylvester
- Department of Otolaryngology, York District Hospital, York, UK
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Affiliation(s)
- K. Voigt
- Scottish Agricultural College (SAC) Consulting: Veterinary Services, Drummondhill; Stratherrick Road Inverness IV2 4JZ
| | - J. Benavides
- Moredun Research Institute; Pentlands Science Park, Bush Loan Penicuik Midlothian EH26 0PZ
| | - A. Rafferty
- Strathspey Veterinary Centre; Forest Road Grantown on Spey Morayshire PH26 3JJ
| | - F. Howie
- SAC Consulting: Veterinary Services; Allan Watt Building, Bush Estate Penicuik Midlothian EH26 0QE
| | - D. Buxton
- Moredun Research Institute; Pentlands Science Park, Bush Loan Penicuik Midlothian EH26 0PZ
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Rafferty A, Alsebaie A, Olabi A, Prescott T. Properties of zirconia-toughened-alumina prepared via powder processing and colloidal processing routes. J Colloid Interface Sci 2009; 329:310-5. [DOI: 10.1016/j.jcis.2008.10.010] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2008] [Revised: 10/01/2008] [Accepted: 10/04/2008] [Indexed: 11/16/2022]
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Clifford A, Hill R, Rafferty A, Mooney P, Wood D, Samuneva B, Matsuya S. The influence of calcium to phosphate ratio on the nucleation and crystallization of apatite glass-ceramics. J Mater Sci Mater Med 2001; 12:461-469. [PMID: 15348287 DOI: 10.1023/a:1011213406951] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The nucleation and crystallization behavior of a series of glasses based on 4.5SiO2-3Al2O3-YP2O5-3CaO-1.51CaF2 was studied. The parameter Y was varied to give calcium to phosphate ratios between one and two. All of the glasses studied crystallized firstly to fluorapatite (Ca5PO4)3F). The glass with a calcium to phosphate ratio of 1.67, corresponding to apatite, bulk nucleated to give fluorapatite (FAP). The glasses with calcium : phosphate ratios either less than that of apatite, or greater than that of apatite all exhibited surface nucleation of FAP. However, following a nucleation hold of one hour at approximately 50 K above the glass transition temperature these glasses exhibited bulk nucleation of FAP.
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Affiliation(s)
- A Clifford
- Department of Materials Science and Technology, University of Limerick, Limerick, Ireland
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Abstract
In the last few decades there has been an increase in the reported prevalence of autism and its correlates within what is now termed autistic spectrum disorder (ASD): from 20 in every 10,000 children being estimated by Wing and Gould (1979) to 91 in every 10,000 by the National Autistic Society (NAS) (1999). While changes in criteria may account for some of this it is accepted that such children are increasingly being identified and knowledge of autism is growing. Semi-structured interviews were conducted with nine teaching staff from seven different schools for children with special needs to elicit information in relation to preparing young adults with ASD for the world of work. Results indicated educational practices are being modified for children with autism. Currently the most specifically tailored packages are offered in schools for children with severe learning difficulties.
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Affiliation(s)
- A Patterson
- School of Psychology and Communication, University of Ulster, Newtownabbey, Co Antrim BT37 0QB.
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Haaga J, Mason J, Omoro F, Quinn V, Rafferty A, Test K, Wasonga L. Child malnutrition in rural Kenya: A geographic and agricultural classification. Ecol Food Nutr 1986. [DOI: 10.1080/03670244.1986.9990934] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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