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Leung B, Gonzalez A. Global monitoring for biodiversity: Uncertainty, risk, and power analyses to support trend change detection. Sci Adv 2024; 10:eadj1448. [PMID: 38363843 DOI: 10.1126/sciadv.adj1448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 01/17/2024] [Indexed: 02/18/2024]
Abstract
Global targets aim to reverse biodiversity declines by 2050 but require knowledge of current trends and future projections under policy intervention. First, given uncertainty in measurement of current trends, we propose a risk framework, considering probability and magnitude of decline. While only 11 of 198 systems analyzed (taxonomic groups by country from the Living Planet Database) showed declining abundance with high certainty, 20% of systems had a 70% chance of strong declines. Society needs to decide acceptable risks of biodiversity loss. Second, we calculated statistical power to detect trend change using ~12,000 populations from 62 systems currently showing strong declines. Current trend uncertainty hinders our ability to assess improvements. Trend change is detectable with high certainty in only 14 systems, even if thousands of populations are sampled, and conservation action reduces net declines to zero immediately, on average. We provide potential solutions to improve monitoring of progress toward biodiversity targets.
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Affiliation(s)
- Brian Leung
- Department of Biology, McGill University, Montreal, Quebec H3A 1B1, Canada
- Bieler School of Environment, McGill University, Montreal, Quebec H3A 2A7, Canada
- Smithsonian Tropical Research Institute (STRI), P.O. Box 0843-03092, Panama City, Panama
| | - Andrew Gonzalez
- Department of Biology, McGill University, Montreal, Quebec H3A 1B1, Canada
- Quebec Centre for Biodiversity Science (QCBS), Montreal, Quebec H3A 1B1, Canada
- Group on Earth Observations Biodiversity Observation Network (GEO BON), Montreal, Quebec H3A 1B1, Canada
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2
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Dos Santos Alves RP, Timis J, Miller R, Valentine K, Pinto PBA, Gonzalez A, Regla-Nava JA, Maule E, Nguyen MN, Shafee N, Landeras-Bueno S, Olmedillas E, Laffey B, Dobaczewska K, Mikulski Z, McArdle S, Leist SR, Kim K, Baric RS, Ollmann Saphire E, Elong Ngono A, Shresta S. Human coronavirus OC43-elicited CD4 + T cells protect against SARS-CoV-2 in HLA transgenic mice. Nat Commun 2024; 15:787. [PMID: 38278784 PMCID: PMC10817949 DOI: 10.1038/s41467-024-45043-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 01/10/2024] [Indexed: 01/28/2024] Open
Abstract
SARS-CoV-2-reactive T cells are detected in some healthy unexposed individuals. Human studies indicate these T cells could be elicited by the common cold coronavirus OC43. To directly test this assumption and define the role of OC43-elicited T cells that are cross-reactive with SARS-CoV-2, we develop a model of sequential infections with OC43 followed by SARS-CoV-2 in HLA-B*0702 and HLA-DRB1*0101 Ifnar1-/- transgenic mice. We find that OC43 infection can elicit polyfunctional CD8+ and CD4+ effector T cells that cross-react with SARS-CoV-2 peptides. Furthermore, pre-exposure to OC43 reduces subsequent SARS-CoV-2 infection and disease in the lung for a short-term in HLA-DRB1*0101 Ifnar1-/- transgenic mice, and a longer-term in HLA-B*0702 Ifnar1-/- transgenic mice. Depletion of CD4+ T cells in HLA-DRB1*0101 Ifnar1-/- transgenic mice with prior OC43 exposure results in increased viral burden in the lung but no change in virus-induced lung damage following infection with SARS-CoV-2 (versus CD4+ T cell-sufficient mice), demonstrating that the OC43-elicited SARS-CoV-2 cross-reactive T cell-mediated cross-protection against SARS-CoV-2 is partially dependent on CD4+ T cells. These findings contribute to our understanding of the origin of pre-existing SARS-CoV-2-reactive T cells and their effects on SARS-CoV-2 clinical outcomes, and also carry implications for development of broadly protective betacoronavirus vaccines.
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Affiliation(s)
| | - Julia Timis
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Robyn Miller
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Kristen Valentine
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | | | - Andrew Gonzalez
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Jose Angel Regla-Nava
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
- Department of Microbiology and Pathology, University Center for Health Science (CUCS), University of Guadalajara, Guadalajara, 44340, Mexico
| | - Erin Maule
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Michael N Nguyen
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Norazizah Shafee
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Sara Landeras-Bueno
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Eduardo Olmedillas
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Brett Laffey
- Microscopy and Histology Core Facility, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Katarzyna Dobaczewska
- Microscopy and Histology Core Facility, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Zbigniew Mikulski
- Microscopy and Histology Core Facility, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Sara McArdle
- Microscopy and Histology Core Facility, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Sarah R Leist
- Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Kenneth Kim
- Histopathology Core Facility, La Jolla Institute for Immunology, La Jolla, CA, USA
| | - Ralph S Baric
- Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Erica Ollmann Saphire
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA
- Department of Medicine, Division of Infectious Diseases and Global Public Health, University of California, San Diego (UCSD), La Jolla, CA, USA
| | - Annie Elong Ngono
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.
| | - Sujan Shresta
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.
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Gonzalez A, Soto J, Babiker N, Wroblewski K, Sawicki S, Schoeller D, Luke A, Huisingh-Scheetz M. Higher baseline resting metabolic rate is associated with 1-year frailty decline among older adults residing in an urban area. BMC Geriatr 2023; 23:815. [PMID: 38062368 PMCID: PMC10704798 DOI: 10.1186/s12877-023-04534-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Accepted: 11/30/2023] [Indexed: 12/18/2023] Open
Abstract
BACKGROUND Dysregulated energy metabolism is one hypothesized mechanism underlying frailty. Resting energy expenditure, as reflected by resting metabolic rate (RMR), makes up the largest component of total energy expenditure. Prior work relating RMR to frailty has largely been done in cross section with mixed results. We investigated whether and how RMR related to 1-year frailty change while adjusting for body composition. METHODS N = 116 urban, predominantly African-American older adults were recruited between 2011 and 2019. One-year frailty phenotype (0-5) was regressed on baseline RMR, frailty phenotype, demographics and body composition (DEXA) in an ordinal logistic regression model. Multimorbidity (Charlson comorbidity scale, polypharmacy) and cognitive function (Montreal Cognitive Assessment) were separately added to the model to assess for change to the RMR-frailty relationship. The model was then stratified by baseline frailty status (non-frail, pre-frail) to explore differential RMR effects across frailty. RESULTS Higher baseline RMR was associated with worse 1-year frailty (odds ratio = 1.006 for each kcal/day, p = 0.001) independent of baseline frailty, demographics, and body composition. Lower fat-free mass (odds ratio = 0.88 per kg mass, p = 0.008) was independently associated with worse 1-year frailty scores. Neither multimorbidity nor cognitive function altered these relationships. The associations between worse 1-year frailty and higher baseline RMR (odds ratio = 1.009, p < 0.001) and lower baseline fat-free mass (odds ratio = 0.81, p = 0.006) were strongest among those who were pre-frail at baseline. DISCUSSION We are among the first to relate RMR to 1-year change in frailty scores. Those with higher baseline RMR and lower fat-free mass had worse 1-year frailty scores, but these relationships were strongest among adults who were pre-frail at baseline. These relationships were not explained by chronic disease or impaired cognition. These results provide new evidence suggesting higher resting energy expenditure is associated with accelerate frailty decline.
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Affiliation(s)
| | - J Soto
- Illinois Institute of Technology, Chicago, USA
| | | | - K Wroblewski
- Department of Public Health Sciences, University of Chicago, Chicago, USA
| | - S Sawicki
- Department of Medicine, Section of Geriatrics and Palliative Medicine, University of Chicago, Chicago, USA
| | - D Schoeller
- University of Wisconsin in Madison, Madison, USA
| | - A Luke
- Department of Public Health Sciences, Loyola University, Chicago, USA
| | - Megan Huisingh-Scheetz
- Department of Medicine, Section of Geriatrics and Palliative Medicine, University of Chicago, Chicago, USA.
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4
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Gonzalez A, Vihervaara P, Balvanera P, Bates AE, Bayraktarov E, Bellingham PJ, Bruder A, Campbell J, Catchen MD, Cavender-Bares J, Chase J, Coops N, Costello MJ, Czúcz B, Delavaud A, Dornelas M, Dubois G, Duffy EJ, Eggermont H, Fernandez M, Fernandez N, Ferrier S, Geller GN, Gill M, Gravel D, Guerra CA, Guralnick R, Harfoot M, Hirsch T, Hoban S, Hughes AC, Hugo W, Hunter ME, Isbell F, Jetz W, Juergens N, Kissling WD, Krug CB, Kullberg P, Le Bras Y, Leung B, Londoño-Murcia MC, Lord JM, Loreau M, Luers A, Ma K, MacDonald AJ, Maes J, McGeoch M, Mihoub JB, Millette KL, Molnar Z, Montes E, Mori AS, Muller-Karger FE, Muraoka H, Nakaoka M, Navarro L, Newbold T, Niamir A, Obura D, O'Connor M, Paganini M, Pelletier D, Pereira H, Poisot T, Pollock LJ, Purvis A, Radulovici A, Rocchini D, Roeoesli C, Schaepman M, Schaepman-Strub G, Schmeller DS, Schmiedel U, Schneider FD, Shakya MM, Skidmore A, Skowno AL, Takeuchi Y, Tuanmu MN, Turak E, Turner W, Urban MC, Urbina-Cardona N, Valbuena R, Van de Putte A, van Havre B, Wingate VR, Wright E, Torrelio CZ. Author Correction: A global biodiversity observing system to unite monitoring and guide action. Nat Ecol Evol 2023; 7:2173. [PMID: 37985899 DOI: 10.1038/s41559-023-02263-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Affiliation(s)
- Andrew Gonzalez
- Department of Biology, Group on Earth Observations Biodiversity Observation Network, McGill University, Montreal, Quebec, Canada.
| | | | - Patricia Balvanera
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad (IIES), Universidad Nacional Autónoma de México, Morelia, Mexico
| | - Amanda E Bates
- Biology Department, University of Victoria, Victoria, British Columbia, Canada
| | - Elisa Bayraktarov
- EcoCommons Australia, Research, Specialised and Data Foundations, Griffith University, Nathan, Queensland, Australia
| | | | - Andreas Bruder
- Institute of Microbiology, University of Applied Sciences and Arts of Southern Switzerland, Mendrisio, Switzerland
| | - Jillian Campbell
- Secretariat of the Convention on Biological Diversity, Montreal, Quebec, Canada
| | - Michael D Catchen
- Department of Biology, Group on Earth Observations Biodiversity Observation Network, McGill University, Montreal, Quebec, Canada
| | | | - Jonathan Chase
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Halle, Germany
- Department of Computer Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany
| | - Nicholas Coops
- University of British Columbia, Vancouver, British Columbia, Canada
| | - Mark J Costello
- Faculty of Biosciences and Aquaculture, Nord Universitet, Bodø, Norway
| | - Bálint Czúcz
- Norwegian Institute for Nature Research (NINA), Trondheim, Norway
| | | | - Maria Dornelas
- Centre for Biological Diversity, University of St Andrews, St Andrews, UK
- Guia Marine Lab, MARE, Faculdade de Ciências da Universidade de Lisboa, Cascais, Portugal
| | - Grégoire Dubois
- Knowledge Centre for Biodiversity, Joint Research Centre of the European Commission, Ispra, Italy
| | - Emmett J Duffy
- Tennenbaum Marine Observatories Network and MarineGEO program, Smithsonian Environmental Research Center, Edgewater, MD, USA
| | - Hilde Eggermont
- Belgian Science Policy Office, Belgian Biodiversity Platform/Biodiversa+, Brussels, Belgium
| | - Miguel Fernandez
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Environmental Science and Policy, George Mason University, Fairfax, VA, USA
| | - Nestor Fernandez
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Halle, Germany
- Department of Computer Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany
| | - Simon Ferrier
- CSIRO Environment, Canberra, Australian Capital Territory, Australia
| | - Gary N Geller
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | - Dominique Gravel
- Département de biologie, Université de Sherbrooke, Sherbrooke, Quebec, Canada
| | - Carlos A Guerra
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Halle, Germany
- Department of Biology, University of Leipzig, Leipzig, Germany
| | - Robert Guralnick
- Department of Natural History, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | | | - Tim Hirsch
- Global Biodiversity Information Facility, Copenhagen, Denmark
| | - Sean Hoban
- The Center for Tree Science, The Morton Arboretum, Lisle, IL, USA
| | - Alice C Hughes
- School of Biological Sciences, University of Hong Kong, Hong Kong, China
| | | | - Margaret E Hunter
- US Geological Survey, Wetland & Aquatic Research Center, Sirenia Project, Gainesville, FL, USA
| | - Forest Isbell
- Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN, USA
| | - Walter Jetz
- Department of Ecology and Evolutionary Biology, Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | - Norbert Juergens
- Institute of Plant Science and Microbiology, University of Hamburg, Hamburg, Germany
| | - W Daniel Kissling
- Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands
| | - Cornelia B Krug
- bioDISCOVERY, Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Peter Kullberg
- Finnish Environment Institute (SYKE), Nature Solutions Unit, Helsinki, Finland
| | - Yvan Le Bras
- Pôle national de données de biodiversité, PatriNat, Muséum National d'Histoire Naturelle, Station Marine de Concarneau, Concarneau, France
| | - Brian Leung
- Department of Biology, Group on Earth Observations Biodiversity Observation Network, McGill University, Montreal, Quebec, Canada
| | | | - Jean-Michel Lord
- The Group on Earth Observations Biodiversity Observation Network (GEO BON), Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Michel Loreau
- Theoretical and Experimental Ecology Station, CNRS, Moulis, France
| | | | - Keping Ma
- Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Anna J MacDonald
- Australian Antarctic Division, Department of Climate Change, Energy, the Environment and Water, Kingston, Tasmania, Australia
| | | | - Melodie McGeoch
- Securing Antarctica's Environmental Future, Department of Environment and Genetics, La Trobe University, Melbourne, Victoria, Australia
| | - Jean Baptiste Mihoub
- Centre d'Écologie et des Sciences de la Conservation (CESCO), Muséum National d'Histoire Naturelle, Sorbonne Université, Centre National de la Recherche Scientifique, CP 135, Paris, France
| | - Katie L Millette
- The Group on Earth Observations Biodiversity Observation Network (GEO BON), Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Zsolt Molnar
- Centre for Ecological Research, Institute of Ecology and Botany, Vácrátót, Hungary
| | - Enrique Montes
- Cooperative Institute for Marine and Atmospheric Studies, Rosenstiel School of Marine, Atmospheric, and Earth Science, University of Miami, Miami, Florida, USA
- Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, Miami, Florida, USA
| | - Akira S Mori
- Research Center for Advanced Science and Technology, University of Tokyo, Tokyo, Japan
| | | | - Hiroyuki Muraoka
- River Basin Research Center, Gifu University, Gifu, Japan
- Biodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan
| | - Masahiro Nakaoka
- Akkeshi Marine Station, Field Science Center for Northern Biosphere, Hokkaido University, Hokkaido, Japan
| | | | - Tim Newbold
- Centre for Biodiversity and Environment Research, University College London, London, UK
| | - Aidin Niamir
- Senckenberg Biodiversity and Climate Research Institute, Frankfurt, Germany
| | | | - Mary O'Connor
- Biodiversity Research Centre and Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada
| | | | | | - Henrique Pereira
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Halle, Germany
- Institute of Biology, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Timothée Poisot
- Département de Sciences Biologiques, Université de Montréal, Montreal, Quebec, Canada
| | - Laura J Pollock
- Department of Biology, Group on Earth Observations Biodiversity Observation Network, McGill University, Montreal, Quebec, Canada
| | - Andy Purvis
- Department of Life Sciences, Natural History Museum, London, UK
- Department of Life Sciences, Imperial College London, Ascot, UK
| | - Adriana Radulovici
- The Group on Earth Observations Biodiversity Observation Network (GEO BON), Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Duccio Rocchini
- Department of Biological, Geological, and Environmental Science, Università di Bologna, Bologna, Italy
| | - Claudia Roeoesli
- Remote Sensing Laboratories, Department of Geography, University of Zurich, Zurich, Switzerland
| | - Michael Schaepman
- Remote Sensing Laboratories, Department of Geography, University of Zurich, Zurich, Switzerland
| | - Gabriela Schaepman-Strub
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Dirk S Schmeller
- Laboratoire écologie fonctionnelle et environnement, Université de Toulouse, INPT, UPS, CNRS, Toulouse, France
| | - Ute Schmiedel
- Institute of Plant Science and Microbiology, University of Hamburg, Hamburg, Germany
| | - Fabian D Schneider
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | - Andrew Skidmore
- Faculty of Geo-Information Science and Earth Observation (ITC), University of Twente, Enschede, The Netherlands
| | - Andrew L Skowno
- South African National Biodiversity Institute, Kirstenbosch National Botanical Gardens, Cape Town, South Africa
- Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
| | - Yayioi Takeuchi
- Biodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan
| | - Mao-Ning Tuanmu
- Thematic Center for Systematics and Biodiversity Informatics, Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Eren Turak
- NSW Department of Environment and Planning, Parramatta, New South Wales, Australia
| | - Woody Turner
- Earth Science Division, NASA Headquarters, Washington, DC, USA
| | - Mark C Urban
- Center of Biological Risk and Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
| | - Nicolás Urbina-Cardona
- Facultad de Estudios Ambientales y Rurales, Departamento de Ecología y Territorio, Pontificia Universidad Javeriana, Bogotá, Colombia
| | - Ruben Valbuena
- Division of Remote Sensing of Forests, Department of Forest Resource Management, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden
| | - Anton Van de Putte
- Royal Belgian Institute for Naturalsciences, Brussels, Belgium
- Université Libre de Bruxelles, Brussels, Belgium
| | | | | | - Elaine Wright
- NZ Department of Conservation, Christchurch, New Zealand
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5
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Gonzalez A, Vihervaara P, Balvanera P, Bates AE, Bayraktarov E, Bellingham PJ, Bruder A, Campbell J, Catchen MD, Cavender-Bares J, Chase J, Coops N, Costello MJ, Czúcz B, Delavaud A, Dornelas M, Dubois G, Duffy EJ, Eggermont H, Fernandez M, Fernandez N, Ferrier S, Geller GN, Gill M, Gravel D, Guerra CA, Guralnick R, Harfoot M, Hirsch T, Hoban S, Hughes AC, Hugo W, Hunter ME, Isbell F, Jetz W, Juergens N, Kissling WD, Krug CB, Kullberg P, Le Bras Y, Leung B, Londoño-Murcia MC, Lord JM, Loreau M, Luers A, Ma K, MacDonald AJ, Maes J, McGeoch M, Mihoub JB, Millette KL, Molnar Z, Montes E, Mori AS, Muller-Karger FE, Muraoka H, Nakaoka M, Navarro L, Newbold T, Niamir A, Obura D, O'Connor M, Paganini M, Pelletier D, Pereira H, Poisot T, Pollock LJ, Purvis A, Radulovici A, Rocchini D, Roeoesli C, Schaepman M, Schaepman-Strub G, Schmeller DS, Schmiedel U, Schneider FD, Shakya MM, Skidmore A, Skowno AL, Takeuchi Y, Tuanmu MN, Turak E, Turner W, Urban MC, Urbina-Cardona N, Valbuena R, Van de Putte A, van Havre B, Wingate VR, Wright E, Torrelio CZ. A global biodiversity observing system to unite monitoring and guide action. Nat Ecol Evol 2023; 7:1947-1952. [PMID: 37620553 DOI: 10.1038/s41559-023-02171-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/26/2023]
Affiliation(s)
- Andrew Gonzalez
- Department of Biology, Group on Earth Observations Biodiversity Observation Network, McGill University, Montreal, Quebec, Canada.
| | | | - Patricia Balvanera
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad (IIES), Universidad Nacional Autónoma de México, Morelia, Mexico
| | - Amanda E Bates
- Biology Department, University of Victoria, Victoria, British Columbia, Canada
| | - Elisa Bayraktarov
- EcoCommons Australia, Research, Specialised and Data Foundations, Griffith University, Nathan, Queensland, Australia
| | | | - Andreas Bruder
- Institute of Microbiology, University of Applied Sciences and Arts of Southern Switzerland, Mendrisio, Switzerland
| | - Jillian Campbell
- Secretariat of the Convention on Biological Diversity, Montreal, Quebec, Canada
| | - Michael D Catchen
- Department of Biology, Group on Earth Observations Biodiversity Observation Network, McGill University, Montreal, Quebec, Canada
| | | | - Jonathan Chase
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Halle, Germany
- Department of Computer Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany
| | - Nicholas Coops
- University of British Columbia, Vancouver, British Columbia, Canada
| | - Mark J Costello
- Faculty of Biosciences and Aquaculture, Nord Universitet, Bodø, Norway
| | - Bálint Czúcz
- Norwegian Institute for Nature Research (NINA), Trondheim, Norway
| | | | - Maria Dornelas
- Centre for Biological Diversity, University of St Andrews, St Andrews, UK
- Guia Marine Lab, MARE, Faculdade de Ciências da Universidade de Lisboa, Cascais, Portugal
| | - Grégoire Dubois
- Knowledge Centre for Biodiversity, Joint Research Centre of the European Commission, Ispra, Italy
| | - Emmett J Duffy
- Tennenbaum Marine Observatories Network and MarineGEO program, Smithsonian Environmental Research Center, Edgewater, MD, USA
| | - Hilde Eggermont
- Belgian Science Policy Office, Belgian Biodiversity Platform/Biodiversa+, Brussels, Belgium
| | - Miguel Fernandez
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Environmental Science and Policy, George Mason University, Fairfax, VA, USA
| | - Nestor Fernandez
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Halle, Germany
- Department of Computer Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany
| | - Simon Ferrier
- CSIRO Environment, Canberra, Australian Capital Territory, Australia
| | - Gary N Geller
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | - Dominique Gravel
- Département de biologie, Université de Sherbrooke, Sherbrooke, Quebec, Canada
| | - Carlos A Guerra
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Halle, Germany
- Department of Biology, University of Leipzig, Leipzig, Germany
| | - Robert Guralnick
- Department of Natural History, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | | | - Tim Hirsch
- Global Biodiversity Information Facility, Copenhagen, Denmark
| | - Sean Hoban
- The Center for Tree Science, The Morton Arboretum, Lisle, IL, USA
| | - Alice C Hughes
- School of Biological Sciences, University of Hong Kong, Hong Kong, China
| | | | - Margaret E Hunter
- US Geological Survey, Wetland & Aquatic Research Center, Sirenia Project, Gainesville, FL, USA
| | - Forest Isbell
- Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN, USA
| | - Walter Jetz
- Department of Ecology and Evolutionary Biology, Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | - Norbert Juergens
- Institute of Plant Science and Microbiology, University of Hamburg, Hamburg, Germany
| | - W Daniel Kissling
- Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands
| | - Cornelia B Krug
- bioDISCOVERY, Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Peter Kullberg
- Finnish Environment Institute (SYKE), Nature Solutions Unit, Helsinki, Finland
| | - Yvan Le Bras
- Pôle national de données de biodiversité, PatriNat, Muséum National d'Histoire Naturelle, Station Marine de Concarneau, Concarneau, France
| | - Brian Leung
- Department of Biology, Group on Earth Observations Biodiversity Observation Network, McGill University, Montreal, Quebec, Canada
| | | | - Jean-Michel Lord
- The Group on Earth Observations Biodiversity Observation Network (GEO BON), Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Michel Loreau
- Theoretical and Experimental Ecology Station, CNRS, Moulis, France
| | | | - Keping Ma
- Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Anna J MacDonald
- Australian Antarctic Division, Department of Climate Change, Energy, the Environment and Water, Kingston, Tasmania, Australia
| | | | - Melodie McGeoch
- Securing Antarctica's Environmental Future, Department of Environment and Genetics, La Trobe University, Melbourne, Victoria, Australia
| | - Jean Baptiste Mihoub
- Centre d'Écologie et des Sciences de la Conservation (CESCO), Muséum National d'Histoire Naturelle, Sorbonne Université, Centre National de la Recherche Scientifique, CP 135, Paris, France
| | - Katie L Millette
- The Group on Earth Observations Biodiversity Observation Network (GEO BON), Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Zsolt Molnar
- Centre for Ecological Research, Institute of Ecology and Botany, Vácrátót, Hungary
| | - Enrique Montes
- Cooperative Institute for Marine and Atmospheric Studies, Rosenstiel School of Marine, Atmospheric, and Earth Science, University of Miami, Miami, Florida, USA
- Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, Miami, Florida, USA
| | - Akira S Mori
- Research Center for Advanced Science and Technology, University of Tokyo, Tokyo, Japan
| | | | - Hiroyuki Muraoka
- River Basin Research Center, Gifu University, Gifu, Japan
- Biodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan
| | - Masahiro Nakaoka
- Akkeshi Marine Station, Field Science Center for Northern Biosphere, Hokkaido University, Hokkaido, Japan
| | | | - Tim Newbold
- Centre for Biodiversity and Environment Research, University College London, London, UK
| | - Aidin Niamir
- Senckenberg Biodiversity and Climate Research Institute, Frankfurt, Germany
| | | | - Mary O'Connor
- Biodiversity Research Centre and Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada
| | | | | | - Henrique Pereira
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Halle, Germany
- Institute of Biology, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Timothée Poisot
- Département de Sciences Biologiques, Université de Montréal, Montreal, Quebec, Canada
| | - Laura J Pollock
- Department of Biology, Group on Earth Observations Biodiversity Observation Network, McGill University, Montreal, Quebec, Canada
| | - Andy Purvis
- Department of Life Sciences, Natural History Museum, London, UK
- Department of Life Sciences, Imperial College London, Ascot, UK
| | - Adriana Radulovici
- The Group on Earth Observations Biodiversity Observation Network (GEO BON), Department of Biology, McGill University, Montreal, Quebec, Canada
| | - Duccio Rocchini
- Department of Biological, Geological, and Environmental Science, Università di Bologna, Bologna, Italy
| | - Claudia Roeoesli
- Remote Sensing Laboratories, Department of Geography, University of Zurich, Zurich, Switzerland
| | - Michael Schaepman
- Remote Sensing Laboratories, Department of Geography, University of Zurich, Zurich, Switzerland
| | - Gabriela Schaepman-Strub
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Dirk S Schmeller
- Laboratoire écologie fonctionnelle et environnement, Université de Toulouse, INPT, UPS, CNRS, Toulouse, France
| | - Ute Schmiedel
- Institute of Plant Science and Microbiology, University of Hamburg, Hamburg, Germany
| | - Fabian D Schneider
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | - Andrew Skidmore
- Faculty of Geo-Information Science and Earth Observation (ITC), University of Twente, Enschede, The Netherlands
| | - Andrew L Skowno
- South African National Biodiversity Institute, Kirstenbosch National Botanical Gardens, Cape Town, South Africa
- Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
| | - Yayioi Takeuchi
- Biodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan
| | - Mao-Ning Tuanmu
- Thematic Center for Systematics and Biodiversity Informatics, Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Eren Turak
- NSW Department of Environment and Planning, Parramatta, New South Wales, Australia
| | - Woody Turner
- Earth Science Division, NASA Headquarters, Washington, DC, USA
| | - Mark C Urban
- Center of Biological Risk and Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
| | - Nicolás Urbina-Cardona
- Facultad de Estudios Ambientales y Rurales, Departamento de Ecología y Territorio, Pontificia Universidad Javeriana, Bogotá, Colombia
| | - Ruben Valbuena
- Division of Remote Sensing of Forests, Department of Forest Resource Management, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden
| | - Anton Van de Putte
- Royal Belgian Institute for Naturalsciences, Brussels, Belgium
- Université Libre de Bruxelles, Brussels, Belgium
| | | | | | - Elaine Wright
- NZ Department of Conservation, Christchurch, New Zealand
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6
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Millien V, Leo SST, Turney S, Gonzalez A. It's about time: small mammal communities and Lyme disease emergence. Sci Rep 2023; 13:14513. [PMID: 37667029 PMCID: PMC10477272 DOI: 10.1038/s41598-023-41901-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 08/31/2023] [Indexed: 09/06/2023] Open
Abstract
Theory predicts that biodiversity changes due to climate warming can mediate the rate of disease emergence. The mechanisms linking biodiversity-disease relationships have been described both theoretically and empirically but remain poorly understood. We investigated the relations between host diversity and abundance and Lyme disease risk in southern Quebec, a region where Lyme disease is rapidly emerging. We found that both the abundance of small mammal hosts and the relative abundance of the tick's natural host, the white-footed mouse (Peromyscus leucopus), influenced measures of disease risk in tick vectors (Borrelia burgdorferi infection abundance and prevalence in tick vectors). Our results suggest that the increase in Lyme disease risk is modulated by regional processes involving the abundance and composition of small mammal assemblages. However, the nature and strength of these relationships was dependent both on time and geographic area. The strong effect of P. leucopus abundance on disease risk we report here is of significant concern, as this competent host is predicted to increase in abundance and occurrence in the region, with the northern shift in the range of North American species under climate warming.
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Affiliation(s)
- V Millien
- Redpath Museum, McGill University, Montréal, QC, H3A 0C4, Canada.
- Department of Biology, McGill University, Montréal, QC, H3A 1B1, Canada.
| | - S S T Leo
- Redpath Museum, McGill University, Montréal, QC, H3A 0C4, Canada
- Department of Biology, McGill University, Montréal, QC, H3A 1B1, Canada
| | - S Turney
- Redpath Museum, McGill University, Montréal, QC, H3A 0C4, Canada
- Department of Biology, McGill University, Montréal, QC, H3A 1B1, Canada
| | - A Gonzalez
- Department of Biology, McGill University, Montréal, QC, H3A 1B1, Canada
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7
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Thompson PL, Gonzalez A. Author Correction: Dispersal governs the reorganization of ecological networks under environmental change. Nat Ecol Evol 2023; 7:1537. [PMID: 37488228 DOI: 10.1038/s41559-023-02163-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/26/2023]
Affiliation(s)
- Patrick L Thompson
- Department of Biology, McGill University, Montreal, Quebec, H3A 1B1, Canada.
- Department of Zoology, University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada.
| | - Andrew Gonzalez
- Department of Biology, McGill University, Montreal, Quebec, H3A 1B1, Canada
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8
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Gonzalez A, Chase JM, O'Connor MI. A framework for the detection and attribution of biodiversity change. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220182. [PMID: 37246383 DOI: 10.1098/rstb.2022.0182] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 01/31/2023] [Indexed: 05/30/2023] Open
Abstract
The causes of biodiversity change are of great scientific interest and central to policy efforts aimed at meeting biodiversity targets. Changes in species diversity and high rates of compositional turnover have been reported worldwide. In many cases, trends in biodiversity are detected, but these trends are rarely causally attributed to possible drivers. A formal framework and guidelines for the detection and attribution of biodiversity change is needed. We propose an inferential framework to guide detection and attribution analyses, which identifies five steps-causal modelling, observation, estimation, detection and attribution-for robust attribution. This workflow provides evidence of biodiversity change in relation to hypothesized impacts of multiple potential drivers and can eliminate putative drivers from contention. The framework encourages a formal and reproducible statement of confidence about the role of drivers after robust methods for trend detection and attribution have been deployed. Confidence in trend attribution requires that data and analyses used in all steps of the framework follow best practices reducing uncertainty at each step. We illustrate these steps with examples. This framework could strengthen the bridge between biodiversity science and policy and support effective actions to halt biodiversity loss and the impacts this has on ecosystems. This article is part of the theme issue 'Detecting and attributing the causes of biodiversity change: needs, gaps and solutions'.
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Affiliation(s)
- Andrew Gonzalez
- Department of Biology, McGill University, Montreal, Canada H3A 1B1
- Quebec Centre for Biodiversity Science, Montreal, Canada H3A 1B1
| | - Jonathan M Chase
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig 04103, Germany
- Institute of Computer Science, Martin Luther University Halle-Wittenberg, Halle (Saale) 06099, Germany
| | - Mary I O'Connor
- Department of Zoology and Biodiversity Research Centre, University of British Columbia, Vancouver V6T 1Z4, Canada
- Santa Fe Institute, Santa Fe, NM 87501, USA
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9
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Tekwa E, Gonzalez A, Zurell D, O'Connor M. Detecting and attributing the causes of biodiversity change: needs, gaps and solutions. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220181. [PMID: 37246389 DOI: 10.1098/rstb.2022.0181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Accepted: 04/11/2023] [Indexed: 05/30/2023] Open
Abstract
This issue addresses the multifaceted problems of understanding biodiversity change to meet emerging international development and conservation goals, national economic accounting and diverse community needs. Recent international agreements highlight the need to establish monitoring and assessment programmes at national and regional levels. We identify an opportunity for the research community to develop the methods for robust detection and attribution of biodiversity change that will contribute to national assessments and guide conservation action. The 16 contributions of this issue address six major aspects of biodiversity assessment: connecting policy to science, establishing observation, improving statistical estimation, detecting change, attributing causes and projecting the future. These studies are led by experts in Indigenous studies, economics, ecology, conservation, statistics, and computer science, with representations from Asia, Africa, South America, North America and Europe. The results place biodiversity science in the context of policy needs and provide an updated roadmap for how to observe biodiversity change in a way that supports conservation action via robust detection and attribution science. This article is part of the theme issue 'Detecting and attributing the causes of biodiversity change: needs, gaps and solutions'.
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Affiliation(s)
- Eden Tekwa
- Department of Zoology and Biodiversity Research Centre, The University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4
- Department of Biology, McGill University, Montreal, Quebec, Canada H3A 1B1
- Hakai Institute, Heriot Bay, British Columbia, Canada V0P 1H0
| | - Andrew Gonzalez
- Department of Biology, McGill University, Montreal, Quebec, Canada H3A 1B1
| | - Damaris Zurell
- Institute for Biochemistry and Biology, University of Potsdam, 14469 Potsdam, Germany
| | - Mary O'Connor
- Department of Zoology and Biodiversity Research Centre, The University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4
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10
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Valle D, Mujica V, Gonzalez A. Herbivore-Dependent Induced Volatiles in Pear Plants Cause Differential Attractive Response by Lacewing Larvae. J Chem Ecol 2023; 49:262-275. [PMID: 36690765 DOI: 10.1007/s10886-023-01403-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 01/04/2023] [Accepted: 01/10/2023] [Indexed: 01/25/2023]
Abstract
Biological control may benefit from the behavioral manipulation of natural enemies using volatile organic compounds (VOCs). Among these, herbivore-induced plant volatiles (HIPVs) provide potential tools for attracting or retaining predators and parasitoids of insect pests. This work aimed to characterize the VOCs emitted by pear plants in response to attack by Cacopsylla bidens (Hemiptera: Psyllidae), a major pest in pear orchards, to compare these with VOCs induced by a leaf chewing insect, Argyrotaenia sphaleropa (Lepidoptera: Tortricidae), and to evaluate the behavioral response of Chrysoperla externa (Neuroptera: Chrysopidae) to HIPVs from pear plants damaged by either herbivore. The results demonstrated that plants damaged by the pear psylla emitted VOC blends with increased amounts of aliphatic aldehydes. Leafroller damage resulted in increased amounts of benzeneacetonitrile, (E)-4,8-dimethylnona-1,3,7-triene, β-ocimene and caryophyllene. In olfactometer bioassays, larvae of C. externa were attracted to herbivore-damaged plants when contrasted with undamaged plants. When plant odors from psylla-damaged were contrasted with those of leafroller-damaged plants, C.externa preferred the former, also showing shorter response lag-times and higher response rates when psylla-damaged plants were present. Our results suggest that pear plants respond to herbivory by modifying their volatile profile, and that psylla-induced volatiles may be used as prey-specific chemical cues by chrysopid larvae. Our study is the first to report HIPVs in pear plants attacked by C. bidens, as well as the attraction of C. externa to psyllid-induced volatiles.
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Affiliation(s)
- D Valle
- Protección Vegetal, Instituto Nacional de Investigación Agropecuaria, INIA Las Brujas, Canelones, Uruguay.
| | - V Mujica
- Protección Vegetal, Instituto Nacional de Investigación Agropecuaria, INIA Las Brujas, Canelones, Uruguay
| | - A Gonzalez
- Laboratorio de Ecología Química, Facultad de Química, Universidad de la República, Montevideo, Uruguay
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11
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Song C, Simmons BI, Fortin MJ, Gonzalez A, Kaiser-Bunbury CN, Saavedra S. Rapid monitoring of ecological persistence. Proc Natl Acad Sci U S A 2023; 120:e2211288120. [PMID: 37155860 PMCID: PMC10194002 DOI: 10.1073/pnas.2211288120] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Accepted: 03/29/2023] [Indexed: 05/10/2023] Open
Abstract
Effective conservation of ecological communities requires accurate and up-to-date information about whether species are persisting or declining to extinction. The persistence of an ecological community is supported by its underlying network of species interactions. While the persistence of the network supporting the whole community is the most relevant scale for conservation, in practice, only small subsets of these networks can be monitored. There is therefore an urgent need to establish links between the small snapshots of data conservationists can collect, and the "big picture" conclusions about ecosystem health demanded by policymakers, scientists, and societies. Here, we show that the persistence of small subnetworks (motifs) in isolation-that is, their persistence when considered separately from the larger network of which they are a part-is a reliable probabilistic indicator of the persistence of the network as a whole. Our methods show that it is easier to detect if an ecological community is not persistent than if it is persistent, allowing for rapid detection of extinction risk in endangered systems. Our results also justify the common practice of predicting ecological persistence from incomplete surveys by simulating the population dynamics of sampled subnetworks. Empirically, we show that our theoretical predictions are supported by data on invaded networks in restored and unrestored areas, even in the presence of environmental variability. Our work suggests that coordinated action to aggregate information from incomplete sampling can provide a means to rapidly assess the persistence of entire ecological networks and the expected success of restoration strategies.
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Affiliation(s)
- Chuliang Song
- Department of Biology, Quebec Centre for Biodiversity Science, McGill University, Montreal, QCH3A 0G4, Canada
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ONM5S 3B2, Canada
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ08544
| | - Benno I. Simmons
- Centre for Ecology and Conservation, University of Exeter, Cornwall Campus, PenrynTR10 9FE, United Kingdom
| | - Marie-Josée Fortin
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ONM5S 3B2, Canada
| | - Andrew Gonzalez
- Department of Biology, Quebec Centre for Biodiversity Science, McGill University, Montreal, QCH3A 0G4, Canada
| | | | - Serguei Saavedra
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA02138
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12
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Meler E, Mazarico E, Peguero A, Gonzalez A, Martinez J, Boada D, Vellve K, Arca G, Gómez-Roig MD, Gratacos E, Figueras F. Prognosis of periviable early-fetal growth restriction: Gaining accuracy. BJOG 2023; 130:688-689. [PMID: 36896613 DOI: 10.1111/1471-0528.17422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 11/22/2022] [Indexed: 03/11/2023]
Affiliation(s)
- E Meler
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Centre for Biomedical Research on Rare Diseases (CIBER-ER), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain
| | - E Mazarico
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut de Recerca Sant Joan de Déu (IR-SJD), Barcelona, Spain.,Maternal and Child Health Development Network, RETICS (Redes Temáticas de Investigación Cooperativa en Salud), Research Institute Carlos III, Spanish Ministry of Economy and Competitiveness, Madrid, Spain
| | - A Peguero
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Centre for Biomedical Research on Rare Diseases (CIBER-ER), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain
| | - A Gonzalez
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut de Recerca Sant Joan de Déu (IR-SJD), Barcelona, Spain.,Maternal and Child Health Development Network, RETICS (Redes Temáticas de Investigación Cooperativa en Salud), Research Institute Carlos III, Spanish Ministry of Economy and Competitiveness, Madrid, Spain
| | - J Martinez
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Centre for Biomedical Research on Rare Diseases (CIBER-ER), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain
| | - D Boada
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Centre for Biomedical Research on Rare Diseases (CIBER-ER), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain
| | - K Vellve
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Centre for Biomedical Research on Rare Diseases (CIBER-ER), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain
| | - G Arca
- Department of Neonatology, Hospital Clinic, IDIBAPS, Barcelona, Spain.,Neonatal Group, NeNE Foundation, Barcelona, Spain
| | - M D Gómez-Roig
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut de Recerca Sant Joan de Déu (IR-SJD), Barcelona, Spain.,Maternal and Child Health Development Network, RETICS (Redes Temáticas de Investigación Cooperativa en Salud), Research Institute Carlos III, Spanish Ministry of Economy and Competitiveness, Madrid, Spain
| | - E Gratacos
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Centre for Biomedical Research on Rare Diseases (CIBER-ER), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain
| | - F Figueras
- Barcelona Centre for Maternal-Fetal and Neonatal Medicine (Hospital Clínic and Hospital Sant Joan de Déu), Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Centre for Biomedical Research on Rare Diseases (CIBER-ER), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain
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13
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Song C, Fortin MJ, Gonzalez A. Metapopulation persistence can be inferred from incomplete surveys. Proc Biol Sci 2022; 289:20222029. [PMID: 36515114 PMCID: PMC9748775 DOI: 10.1098/rspb.2022.2029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Accepted: 11/17/2022] [Indexed: 12/15/2022] Open
Abstract
Habitat destruction and fragmentation are principal causes of species loss. While a local population might go extinct, a metapopulation-populations inhabiting habitat patches connected by dispersal-can persist regionally by recolonizing empty patches. To assess metapopulation persistence, two widely adopted indicators in conservation management are metapopulation capacity and patch importance. However, we face a fundamental limitation in that assessing metapopulation persistence requires that we survey or sample all the patches in a landscape: often these surveys are logistically challenging to conduct and repeat, which raises the question whether we can learn enough about the metapopulation persistence from an incomplete survey. Here, we provide a robust statistical approach to infer metapopulation capacity and patch importance by sampling a portion of all patches. We provided analytic arguments on why the metapopulation capacity and patch importance can be well predicted from sub-samples of habitat patches. Full-factorial simulations with more complex models corroborate our analytic predictions. We applied our model to an empirical metapopulation of mangrove hummingbirds (Amazilia boucardi). On the basis of our statistical framework, we provide some sampling suggestion for monitoring metapopulation persistence. Our approach allows for rapid and effective inference of metapopulation persistence from incomplete patch surveys.
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Affiliation(s)
- Chuliang Song
- Department of Biology, Quebec Centre for Biodiversity Science, McGill University, Montreal, Canada H3A 1B1
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada M5S 3B2
| | - Marie-Josée Fortin
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada M5S 3B2
| | - Andrew Gonzalez
- Department of Biology, Quebec Centre for Biodiversity Science, McGill University, Montreal, Canada H3A 1B1
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Abstract
This week, Montreal, Canada, is at the epicenter of international negotiations for biodiversity. Thousands of people from around the world are attending the 15th Conference of the Parties to the United Nations Convention on Biological Diversity (COP15) to witness the negotiation of a new Global Biodiversity Framework. Its goals and targets replace the previous framework-the Aichi Biodiversity Targets-that failed to bring about the transformative change needed to reverse the alarming trends in biodiversity loss.
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Affiliation(s)
- Andrew Gonzalez
- Andrew Gonzalez is a co-chair of GEO BON and a professor in the Department of Biology at McGill University, Montreal, Canada
| | - Maria Cecilia Londoño
- Maria Cecilia Londoño is a co-chair of GEO BON and a researcher at the Alexander von Humboldt Biological Resources Research Institute in Bogota, Colombia
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15
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Novi VT, Gonzalez A, Brockgreitens J, Abbas A. Highly efficient and durable antimicrobial nanocomposite textiles. Sci Rep 2022; 12:17332. [PMID: 36243757 PMCID: PMC9568944 DOI: 10.1038/s41598-022-22370-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 10/13/2022] [Indexed: 01/10/2023] Open
Abstract
Healthcare associated infections cause millions of hospitalizations and cost billions of dollars every year. A potential solution to address this problem is to develop antimicrobial textile for healthcare fabrics (hospital bedding, gowns, lab coats, etc.). Metal nanoparticle-coated textile has been proven to possess antimicrobial properties but have not been adopted by healthcare facilities due to risks of leaching and subsequent loss of function, toxicity, and environmental pollution. This work presents the development and testing of antimicrobial zinc nanocomposite textiles, fabricated using a novel Crescoating process. In this process, zinc nanoparticles are grown in situ within the bulk of different natural and synthetic fabrics to form safe and durable nanocomposites. The zinc nanocomposite textiles show unprecedented microbial reduction of 99.99% (4 log10) to 99.9999% (6 log10) within 24 h on the most common Gram-positive and Gram-negative bacteria, and fungal pathogens. Furthermore, the antimicrobial activity remains intact even after 100 laundry cycles, demonstrating the high longevity and durability of the textile. Independent dermatological evaluation confirmed that the novel textile is non-irritating and hypoallergenic.
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Affiliation(s)
- Vinni Thekkudan Novi
- grid.17635.360000000419368657Department of Bioproducts and Biosystems Engineering, University of Minnesota Twin Cities, 2004 Folwell Ave, St. Paul, MN 55108 USA
| | - Andrew Gonzalez
- Claros Technologies Inc., 1600 Broadway St NE, Suite 100, Minneapolis, MN 55413 USA
| | - John Brockgreitens
- Claros Technologies Inc., 1600 Broadway St NE, Suite 100, Minneapolis, MN 55413 USA
| | - Abdennour Abbas
- grid.17635.360000000419368657Department of Bioproducts and Biosystems Engineering, University of Minnesota Twin Cities, 2004 Folwell Ave, St. Paul, MN 55108 USA ,Claros Technologies Inc., 1600 Broadway St NE, Suite 100, Minneapolis, MN 55413 USA
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16
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Mehta S, Vieira D, Guillen V, Zerpa D, Quintana A, Sanchez C, Ozair S, Brena-Pastor L, Pinos D, Fleming M, Carrera K, Rossitto F, Martinez F, Gonzalez A, Rodriguez K. Artificial intelligence-guided, single-lead EKG may be a game-changer for symptom-to-balloon time reduction in ST-elevated myocardial infarction. Eur Heart J 2022. [DOI: 10.1093/eurheartj/ehac544.1170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Background
Over decades, efforts to shave off life-saving minutes from ST-Elevated Myocardial Infarction (STEMI) care centred on reducing door-to-needle and door-to-balloon times. We firmly believe that symptom-to-balloon time should prove a better focus to this end. Challenges come with this goal as it heavily relies on a patient's perception and initiative to seek care, which we deem intelligent and wearable Artificial Intelligence (AI)-driven Single Lead EKG technologies as an attractive solution in modern-day cardiology.
Purpose
To provide an accurate, accessible, and cost-effective AI-driven Single Lead STEMI detection algorithm that can be embedded into wearable devices and employed in a self-administered fashion.
Methods
Database: EKG records from Mexico, Colombia, Argentina, and Brazil from April 2014 to December 2019. Dataset: A total of 11,567 12-lead EKG records of 10[s] length with a sampling frequency of 500 Hz, including the following balanced classes: angiographically confirmed and unconfirmed STEMI, branch blocks, non-specific ST-T abnormalities, normal and abnormal (200+ CPT codes, excluding those mentioned above). Cardiologists manually checked the label of each record to ensure precision. Pre-processing: We discard the first and last 250 samples as they may contain a standardisation pulse. The study applied a digital low pass filter of order 5 with a frequency cut-off of 35 Hz. The mean was subtracted from each Lead. Classification: The determined classes were “STEMI” (Including STEMI in different locations of the myocardium – anterior, inferior, and lateral); and “Not-STEMI” (Combination of randomly sample, branch blocks, non-specific ST-T changes, and abnormal records – 25% of each). Training and Testing: A 1-D Convolutional Neural Network was trained and tested with a dataset proportion of 90/10, respectively. A different model was trained and tested for each Lead, using the central 4,500 samples of the records. The last dense layer outputs a probability for each report of being STEMI or Not-STEMI. Lead V2 showed the best overall results. The model was further tested through the same methodology using the best Lead with a subset of the previous data, excluding the unconfirmed STEMI EKG records (Total 7,230 12-lead EKG records for Confirmed Only STEMI dataset). Performance metrics were reported for each experiment and compared.
Results
Combined STEMI data: Accuracy: 91.2%; Sensitivity: 89.6%; Specificity: 92.9%. Confirmed STEMI Only dataset: Accuracy: 92.4%; Sensitivity: 93.4%; Specificity: 91.4% (Figure 1).
Conclusion
By assiduously improving the quality of the model's input, we continue to assess our algorithm's performance and reliability for future clinical validation as a potential remote monitoring and early STEMI detection device.
Funding Acknowledgement
Type of funding sources: None.
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Affiliation(s)
- S Mehta
- Lumen Foundation , Miami , United States of America
| | - D Vieira
- Lumen Foundation , Miami , United States of America
| | - V Guillen
- Lumen Foundation , Miami , United States of America
| | - D Zerpa
- Lumen Foundation , Miami , United States of America
| | - A Quintana
- Lumen Foundation , Miami , United States of America
| | - C Sanchez
- Lumen Foundation , Miami , United States of America
| | - S Ozair
- Lumen Foundation , Miami , United States of America
| | | | - D Pinos
- Lumen Foundation , Miami , United States of America
| | - M Fleming
- Lumen Foundation , Miami , United States of America
| | - K Carrera
- Lumen Foundation , Miami , United States of America
| | - F Rossitto
- Lumen Foundation , Miami , United States of America
| | - F Martinez
- Lumen Foundation , Miami , United States of America
| | - A Gonzalez
- Lumen Foundation , Miami , United States of America
| | - K Rodriguez
- Lumen Foundation , Miami , United States of America
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Angeli E, Reese-Petersen A, Gonzalez A, Lopez B, Ravassa S, Genovese F, Karsdal M, Diaz J. Type III collagen formation is significantly associated with risk of outcome in HFpEF patients but loses its significant association with underlying AF. Eur Heart J 2022. [DOI: 10.1093/eurheartj/ehac544.792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Introduction
Heart failure with preserved ejection fraction (HFpEF) is the most common type of heart failure, associated with high morbidity and mortality. Atrial fibrillation (AF) has been associated with structural remodelling and fibrosis and can coexist with HFpEF. Type III collagen is the second most abundant collagen in the heart wall and has been associated with cardiac fibrosis. It has been previously shown that type III collagen formation, measured by PRO-C3, is prognostic for all-cause mortality in HFpEF.
Purpose
In this study, we aimed at investigating if the prognostic power of PRO-C3 in relation to all-cause mortality would be affected by underlying AF in HFpEF patients.
Methods
The analysis included 166 individuals with hypertensive HFpEF. The patients were classified in three groups according to NYHA classification, 43.2% in NYHA Class II, 52.5% NYHA Class III and 2.5% NYHA Class IV. A previous history of AF was present in 53.4% of the patients. Cardiac function was assessed by echocardiography and standard clinical measures. Type III collagen formation was evaluated by means of ELISA with the biomarker PRO-C3, which targets the released N-terminal pro-peptide of type III collagen.
Results
Levels of PRO-C3 were significantly elevated in HFpEF patients with AF (p=0.0063). PRO-C3 was significantly predictive of all-cause mortality in HFpEF patients (AUC=0.643, p=0.0053), but lost its significant association when factoring in AF (AUC=0.581, p=0.235). There was an increased risk of all-cause mortality (p=0.0089) but not statistically significant differences in HFpEF patients with AF (p=0.178) with increasing tertiles of PRO-C3.
Conclusions
Type III collagen formation as measured by PRO-C3, was increased in patients with HFpEF and previously diagnosed AF. However, while PRO-C3 can be predictive of all-cause mortality in HFpEF patients, it lacks predicting ability when AF is considered. The presented data suggest a potential role of increased type III collagen formation in HFpEF patients with adverse outcomes, which is consistent with the presence of increased fibrosis, and can potentially be used as a tool of risk stratification.
Funding Acknowledgement
Type of funding sources: Private company. Main funding source(s): Nordic Bioscience A/S
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Affiliation(s)
- E Angeli
- Nordic Bioscience A/S , Herlev , Denmark
| | | | - A Gonzalez
- Program of Cardiovascular Diseases, CIMA Universidad de Navarra and IdiSNA , Pamplona , Spain
| | - B Lopez
- Program of Cardiovascular Diseases, CIMA Universidad de Navarra and IdiSNA , Pamplona , Spain
| | - S Ravassa
- Program of Cardiovascular Diseases, CIMA Universidad de Navarra and IdiSNA , Pamplona , Spain
| | - F Genovese
- Nordic Bioscience A/S , Herlev , Denmark
| | - M Karsdal
- Nordic Bioscience A/S , Herlev , Denmark
| | - J Diaz
- Program of Cardiovascular Diseases, CIMA Universidad de Navarra and IdiSNA , Pamplona , Spain
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Mehta S, Vieira D, Zerpa D, Guillen V, Gonzalez A, Brena-Pastor L, Siyam T, Stoica S, Ozair S, Pinos D, Martinez F, Fleming M, Carrera K, Rossitto F, Whuking C. Performance metrics of AI-enhanced single lead EKG maintained after entry of organised clustered data. Eur Heart J 2022. [DOI: 10.1093/eurheartj/ehac544.2786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Background
Our experience in creating innovative Artificial Intelligence-guided single lead EKG methodologies for ST-Elevation Myocardial Infarction (STEMI) detection within complex EKG records has been previously validated.
Purpose
By expanding the intricate variables of our previously tested algorithm input, we seek to further improve our STEMI detecting tool.
Methods
11,567 12-lead EKG records (10-s length, 500 Hz sample frequency) derived from the Latin America Telemedicine Infarct Network database from April 2014 to December 2019. From these records, we included the following balanced classes: angiographically confirmed and unconfirmed STEMI (divided by wall affected), branch blocks, non-specific ST-T changes, normal, and abnormal (Remaining 200+ CPT codes). Cardiologist annotations ensured precision (Ground truth). Determined classes were “STEMI” and “Not-STEMI”. A 1-D Convolutional Neural Network model was trained and tested for each lead with dataset proportions of 90/10, respectively. The last dense layer outputs a probability for each record being STEMI/Not-STEMI. The analysis also included performance metrics and false-negative reports.
Results
Overall, the most promising Single lead for STEMI detection was V2 (91.2% Accuracy, 89.6% Sensitivity, and 92.9% Specificity). 55% of false negatives were inferior wall STEMI (Table 1).
Conclusion
Appreciable progress of our new methodology compared to our previous experiences in AI-guided Single Lead for STEMI detection, especially for lead V2. By performing a thorough analysis of false-negative reports, we aspire to identify potential areas of STEMI detection weakness which will become the focus of future ventures.
Funding Acknowledgement
Type of funding sources: None.
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Affiliation(s)
- S Mehta
- Lumen Foundation , Miami , United States of America
| | - D Vieira
- Lumen Foundation , Miami , United States of America
| | - D Zerpa
- Lumen Foundation , Miami , United States of America
| | - V Guillen
- Lumen Foundation , Miami , United States of America
| | - A Gonzalez
- Lumen Foundation , Miami , United States of America
| | | | - T Siyam
- Lumen Foundation , Miami , United States of America
| | - S Stoica
- Lumen Foundation , Miami , United States of America
| | - S Ozair
- Lumen Foundation , Miami , United States of America
| | - D Pinos
- Lumen Foundation , Miami , United States of America
| | - F Martinez
- Lumen Foundation , Miami , United States of America
| | - M Fleming
- Lumen Foundation , Miami , United States of America
| | - K Carrera
- Lumen Foundation , Miami , United States of America
| | - F Rossitto
- Lumen Foundation , Miami , United States of America
| | - C Whuking
- Lumen Foundation , Miami , United States of America
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Mehta S, Vieira D, Zerpa D, Guillen V, Carrasquel M, Ramadan S, Martinez F, Rossitto F, Carrera K, Fleming M, Pinos D, Brena-Pastor L, Ozair S, Gonzalez A, Barco A. No need for a cardiologist for AMI diagnosis – progress of transforming a behemoth telemedicine program with artificial intelligence. Eur Heart J 2022. [DOI: 10.1093/eurheartj/ehac544.2251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
The Latin American Telemedicine Infarct Network (LATIN) Telemedicine is a mammoth hub and spoke model that provides an umbrella of AMI protection for 100 million patients. In the program, 826,043 patients had a telemedicine encounter; 7,400 with AMI were diagnosed; 4,332 of them managed with guidelines-based strategies. We have gradually begun implementing a system for using Artificial Intelligence (AI) algorithms embedded into EKGs for rapid and accurate STEMI detection and validated the results with a cardiologist's interpretations.
Purpose
To test whether an AI-driven EKG algorithm can effectively substitute a cardiologist for STEMI telemedicine protocols.
Methods
The AI algorithm construction was in the following fashion. Sample: a selection of 8,511 EKG and 90,592 classified heartbeats. Pre-processing: segmentation of each EKG into individual heartbeats. Training & testing: 90% and 10% of the total dataset, respectively. Classification: 1-D Convolutional Neural Network; the study constructed classes for each heartbeat. The algorithm was next deployed on a consecutive series of LATIN EKG records to diagnose STEMI. We afterwards compared the algorithm's results with eight expert cardiologists' interpretations of the same sample.
Results
This study achieved a concordance of 91% between the AI algorithm and cardiologist interpretation (Figure 1).
Conclusions
The initial results with AI algorithms for STEMI diagnosis are encouraging and may provide the base work for new tools for cardiologists to improve their efficiency. Moreover, implementing this innovative tool may overcome current limitations associated with the telemedical management of this disease.
Funding Acknowledgement
Type of funding sources: None.
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Affiliation(s)
- S Mehta
- Lumen Foundation , Miami , United States of America
| | - D Vieira
- Lumen Foundation , Miami , United States of America
| | - D Zerpa
- Lumen Foundation , Miami , United States of America
| | - V Guillen
- Lumen Foundation , Miami , United States of America
| | - M Carrasquel
- Lumen Foundation , Miami , United States of America
| | - S Ramadan
- Lumen Foundation , Miami , United States of America
| | - F Martinez
- Lumen Foundation , Miami , United States of America
| | - F Rossitto
- Lumen Foundation , Miami , United States of America
| | - K Carrera
- Lumen Foundation , Miami , United States of America
| | - M Fleming
- Lumen Foundation , Miami , United States of America
| | - D Pinos
- Lumen Foundation , Miami , United States of America
| | | | - S Ozair
- Lumen Foundation , Miami , United States of America
| | - A Gonzalez
- Lumen Foundation , Miami , United States of America
| | - A Barco
- Lumen Foundation , Miami , United States of America
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Song C, Simmons BI, Fortin MJ, Gonzalez A. Generalism drives abundance: A computational causal discovery approach. PLoS Comput Biol 2022; 18:e1010302. [PMID: 36173959 PMCID: PMC9521805 DOI: 10.1371/journal.pcbi.1010302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Accepted: 06/14/2022] [Indexed: 11/29/2022] Open
Abstract
A ubiquitous pattern in ecological systems is that more abundant species tend to be more generalist; that is, they interact with more species or can occur in wider range of habitats. However, there is no consensus on whether generalism drives abundance (a selection process) or abundance drives generalism (a drift process). As it is difficult to conduct direct experiments to solve this chicken-and-egg dilemma, previous studies have used a causal discovery method based on formal logic and have found that abundance drives generalism. Here, we refine this method by correcting its bias regarding skewed distributions, and employ two other independent causal discovery methods based on nonparametric regression and on information theory, respectively. Contrary to previous work, all three independent methods strongly indicate that generalism drives abundance when applied to datasets on plant-hummingbird communities and reef fishes. Furthermore, we find that selection processes are more important than drift processes in structuring multispecies systems when the environment is variable. Our results showcase the power of the computational causal discovery approach to aid ecological research. Ever since Aristotle, the chicken-or-egg causality dilemma has baffled researchers. Such causality dilemmas are abundant in ecological research, where causal directions are often assumed but not tested. An archetypal example is whether being a generalist causes a species to be more abundant, or whether being more abundant causes a species to be generalists. Without doubt, the gold standard to establish causal directions is controlled experiments. However, controlled experiments that can disentangle the direction of causality in this case are challenging because it involves controlling biotic or abiotic niche breadth. These challenges create an opportunity for computational tools to detect the most likely causal direction. Here, by adapting a set of recently developed computational methods, we provide strong evidence that generalism drives abundance, overturning the previously established direction. We hope our work raises awareness of the potential for computational discovery methods to address long-standing questions in ecology, especially increasingly large datasets become available.
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Affiliation(s)
- Chuliang Song
- Department of Biology, Quebec Centre for Biodiversity Science, McGill University, Montreal, Canada
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
- * E-mail:
| | - Benno I. Simmons
- Department of Ecology and Conservation, University of Exeter, Cornwall Campus, Penryn, United Kingdom
| | - Marie-Josée Fortin
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
| | - Andrew Gonzalez
- Department of Biology, Quebec Centre for Biodiversity Science, McGill University, Montreal, Canada
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Rosell A, Baeza S, Lopez-SeguÍ F, Mouriño R, Saigí M, Munné M, Bechini J, Gonzalez A, Cervera E, Compte M, Garcia-Reina S, NUÑEZ A, ARA J. EP01.03-002 Implementation of the International Lung Screen Trial (ILST) in Catalonia: A Cost Analysis study. J Thorac Oncol 2022. [DOI: 10.1016/j.jtho.2022.07.284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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22
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Huang G, Strikarsky S, Weinstein J, Ellahi M, Gonzalez A, Idkowiak-Baldys J, Glynn J. 415 Using a cosmetic blend to produce a contraction response in human keratinocytes and deliver tightening of skin around the eye. J Invest Dermatol 2022. [DOI: 10.1016/j.jid.2022.05.424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Marquez J, Dinguirard N, Gonzalez A, Kane A, Joffe N, Yoshino T, Castillo M. Molecular characterization of thioester-containing proteins in Biomphalaria glabrata and their differential gene expression upon Schistosoma mansoni exposure. Front Immunol 2022; 13:903158. [PMID: 35967434 PMCID: PMC9363628 DOI: 10.3389/fimmu.2022.903158] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Accepted: 06/27/2022] [Indexed: 11/30/2022] Open
Abstract
Schistosomiasis is a disease caused by trematode parasites of the genus Schistosoma that affects approximately 200 million people worldwide. Schistosomiasis has been a persistent problem in endemic areas as there is no vaccine available, currently used anti-helmintic medications do not prevent reinfection, and most concerning, drug resistance has been documented in laboratory and field isolates. Thus, alternative approaches to curtail this human disease are warranted. Understanding the immunobiology of the obligate intermediate host of these parasites, which include the freshwater snail Biomphalaria glabrata, may facilitate the development of novel methods to stop or reduce transmission to humans. Molecules from the thioester-containing protein (TEP) superfamily have been shown to be involved in immunological functions in many animals including corals and humans. In this study we identified, characterized, and compared TEP transcripts and their expression upon S. mansoni exposure in resistant and susceptible strains of B. glabrata snails. Results showed the expression of 11 unique TEPs in B. glabrata snails. These transcripts present high sequence identity at the nucleotide and putative amino acid levels between susceptible and resistant strains. Further analysis revealed differences in several TEPs’ constitutive expression levels between resistant and susceptible snail strains, with C3-1, C3-3, and CD109 having higher constitutive expression levels in the resistant (BS90) strain, whereas C3-2 and TEP-1 showed higher constitutive expression levels in the susceptible (NMRI) strain. Furthermore, TEP-specific response to S. mansoni miracidia exposure reiterated their differential expression, with resistant snails upregulating the expression of both TEP-4 and TEP-3 at 2 h and 48 h post-exposure, respectively. Further understanding the diverse TEP genes and their functions in invertebrate animal vectors will not only expand our knowledge in regard to this ancient family of immune proteins, but also offer the opportunity to identify novel molecular targets that could aid in the efforts to develop control methods to reduce schistosomiasis transmission.
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Affiliation(s)
- J. Marquez
- Department of Biology, New Mexico State University, Las Cruces, NM, United States
| | - N. Dinguirard
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, United States
| | - A. Gonzalez
- Department of Biology, New Mexico State University, Las Cruces, NM, United States
| | - A.E. Kane
- Department of Biology, New Mexico State University, Las Cruces, NM, United States
| | - N.R. Joffe
- Department of Biology, New Mexico State University, Las Cruces, NM, United States
| | - T.P. Yoshino
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, United States
| | - M.G. Castillo
- Department of Biology, New Mexico State University, Las Cruces, NM, United States
- *Correspondence: M.G. Castillo,
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Quintana R, Garcia L, Alba P, Roverano S, Alvarez A, Graf C, Pisoni C, Spindler A, Gomez C, Figueredo HM, Papasidero S, Paniego RH, Delavega M, Civit De Garignani EE, Gonzalez Lucero L, Martire V, Águila Maldonado R, Gordon S, Gobbi C, Nieto R, Rausch G, Góngora V, D’amico MA, Dubinsky D, Orden AO, Zacariaz J, Romero J, Pera MA, Rillo O, Baez R, Arturi V, Gonzalez A, Vivero F, Schmid M, Caputo V, Larroude MS, Gomez G, Rodriguez G, Marin J, Collado MV, Jorfen M, Bedran Z, Sarano J, Zelaya D, Sacnun M, Finucci P, Rojas Tessel R, Sattler ME, Machado Escobar M, Astesana P, Paris UV, Allievi A, Vandale JM, Pons-Estel B, Pons-Estel G, García M. POS0707 POTENTIAL USE OF BELIMUMAB IN LUPUS PATIENTS FROM ARGENTINE COHORT ACCORDING DISEASE ACTIVITY STATE. Ann Rheum Dis 2022. [DOI: 10.1136/annrheumdis-2022-eular.789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
BackgroundThe goal of targeted treatment in patients with Systemic Lupus Erythematosus (SLE) is to achieve clinical remission or low disease activity, with the best quality of life, low damage rates and better survival 1-4. RELESSAR is a multicenter, cross-sectional study registry of ≥18 years SLE (ACR 97) patients 5.ObjectivesTo describe demographic, clinical characteristics and treatments in SLE patients according to disease activity state. To evaluate the proportion of SLE and refractory SLE patients that are potentially candidates for Belimumab treatment (Active SLE despite standard treatment including increased acDNA autoantibodies and low complement).MethodsWe evaluated demographic and clinical data, treatments, score of damage (SLICC), activity (SLEDAI) and comorbidity (Charlson), hospital admissions and severe infections. The patients were compared according to disease activity: remission (SLEDAI = 0 and without corticosteroids), low disease activity (LDA, SLEDAI> 0 and ≤4 and without corticosteroids) and non-optimal control (SLEDAI> 4 and any dose of corticosteroids). Refractory SLE was defined according to Rituximab (RTX) use, non-response to cyclophosphamide or two or more immunosuppressant or splenectomized patients. Potential use of Belimumab according approved prescription in Argentina was analyzed.ResultsOverall, 1277 patients were analyzed: 299 (23.4%) were in remission, 162 (12.7%) in LDA and 816 (63.9%) with non-optimal control of the disease.Patients in non-optimal control group were younger, less frequently female and they showed less time of disease and lower socioeconomic status (p < 0.001). They were also more prevalent mestizos (p= 0.004), had higher SLEDAI and SLICC indexes (p <0.001) and higher use of immunosuppressant therapy (p <0.001). There was no difference regarding biologic treatment (RTX p= 0.547 and Belimumab p= 0.08). This group had higher proportion of hospital admissions and severe infections (p<0.001, respectively).Two hundred and one SLE patients fulfilled the use of Belimumab prescription criteria but only 45/201 patients (22,3%) received it in the last visit. Malar rash was the only clinical variable associated with the use of Belimumab (72.7% vs 29.8% p= 0.005).Seventy-six patients classified as refractory SLE (15.7%) and 56/76 (75.7%) never received Belimumab. Patients on Belimumab therapy were associated to treatment with lower doses of corticoids (p= 0.018) and lower rate of hospital admission caused by SLE flare (p= 0.027).ConclusionA high percentage of patients had uncontrolled disease upon entry into the registry and were potential candidates for treatment with Belimumab. The patients who received biologic treatment showed the benefit of requiring fewer doses of corticosteroids and having a lower rate of hospitalizations.References[1]Mok CC. Treat-to-target in systemic lupus erythematosus: Are we there yet? Expert Rev Clin Pharmacol. 2016;9(5).[2]Morand EF, Mosca M. Treat to target, remission and low disease activity in SLE. Vol. 31, Best Practice and Research: Clinical Rheumatology. 2017.[3]Golder V, Tsang-A-Sjoe MWP. Treatment targets in SLE: Remission and low disease activity state. Rheumatol (United Kingdom). 2020;59.[4]Ruiz-Irastorza G, Bertsias G. Treating systemic lupus erythematosus in the 21st century: new drugs and new perspectives on old drugs. Vol. 59, Rheumatology (United Kingdom). 2021.[5]Hochberg MC. Updating the American College of Rheumatology revised criteria for the classification of systemic lupus erythematosus. Arthritis Rheum [Internet]. 1997;40(9):1725. Available from: http://www.ncbi.nlm.nih.gov/pubmed/9324032Disclosure of InterestsRosana Quintana: None declared, Lucila Garcia: None declared, Paula Alba: None declared, Susana Roverano: None declared, Analia Alvarez: None declared, Cesar Graf: None declared, Cecilia Pisoni: None declared, Alberto Spindler: None declared, Catalina Gomez: None declared, Heber Matias Figueredo: None declared, Silvia Papasidero: None declared, Raul Horacio Paniego: None declared, Maria DeLaVega: None declared, Emma Estela Civit De Garignani: None declared, Luciana Gonzalez Lucero: None declared, Victoria Martire: None declared, Rodrigo Águila Maldonado: None declared, Sergio Gordon: None declared, Carla Gobbi: None declared, Romina Nieto: None declared, Gretel Rausch: None declared, Vanina Góngora: None declared, Maria Agustina D´Amico: None declared, Diana Dubinsky: None declared, Alberto Omar Orden: None declared, Johana Zacariaz: None declared, Julia Romero: None declared, Mariana Alejandra Pera: None declared, Oscar Rillo: None declared, Roberto Baez: None declared, Valeria Arturi: None declared, Andrea Gonzalez: None declared, Florencia Vivero: None declared, Marcela Schmid: None declared, Victor Caputo: None declared, Maria Silvia Larroude: None declared, Graciela Gomez: None declared, Graciela Rodriguez: None declared, Josefina Marin: None declared, Maria Victoria Collado: None declared, Marisa Jorfen: None declared, Zaida Bedran: None declared, Judith Sarano: None declared, David Zelaya: None declared, MONICA SACNUN: None declared, Pablo Finucci: None declared, Romina Rojas Tessel: None declared, Maria Emilia Sattler: None declared, MAXIMILIANO MACHADO ESCOBAR: None declared, Pablo Astesana: None declared, Ursula Vanesa Paris: None declared, Alberto Allievi: None declared, Juan Manuel Vandale: None declared, Bernardo Pons-Estel: None declared, Guillermo Pons-Estel: None declared, Mercedes García Grant/research support from: GSK grant
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Lourido L, Quaranta P, Paz González R, Calamia V, Cañete JDD, Fernandez B, González-Álvaro I, Gonzalez A, Pablos JL, Blanco FJ, Ruiz-Romero C. POS0438 IDENTIFICATION OF ANTI-CYTOKINE AUTOANTIBODIES WITH POTENTIAL TO PREDICT FLARE IN RHEUMATOID ARTHRITIS PATIENTS UNDERGOING BIOLOGICAL THERAPIES: A DISCOVERY STUDY. Ann Rheum Dis 2022. [DOI: 10.1136/annrheumdis-2022-eular.4371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
BackgroundThe presence of anti-cytokine autoantibodies (ACAAs) seems to be a physiologic mechanism to control the immune response and regulate cytokine activity. Biological therapies also regulate cytokine activities and have greatly improved the quality of life of RA patients. However, alteration of the cytokine network by the use of these treatments may lead to a disbalance in the regulatory system of ACAAs. We hypothesize the ACAAs network may influence the course of immune response in RA patients and may be useful to predict the therapy efficacy.ObjectivesWe aimed to explore the potential of circulating ACAAs to predict flare in a cohort of RA patients treated with biological therapy.MethodsWe employed sera at baseline from 194 RA patients of the clinical trial OPTIBIO1 (A Coruña), whose primary endpoint is to evaluate the usefulness of standardized protocol strategies of dose reduction in patients with RA in clinical remission treated with biologics. These patients were treated with TNF inhibitors (Etanercept, N=47; Infliximab, N=12; Adalimumab, N=35; Certolizumab (CTZ), N=17; Golimumab, N=5), Tocilizumab (TCZ, N=60) and Abatacept (ABA, N=18). Patients were in clinical remission (DAS 28 <2.6 or SDAI <5 or ACR/EULAR 2011 criteria) at least from 6 months. Patients were followed during a minimum period of one year and maximum period of 3 years. Flare was considered when remission criteria were not fulfilled. The bead-based antigen array MILLIPLEX MAP Human Cytokine Autoantibody Magnetic Bead Panel was used for the simultaneous detection and quantification in sera of anti-BAFF, anti-G-CSF, anti-IFNβ, anti-IFNγ, anti-IL-1α, anti-IL-6, anti-IL-8, anti-IL-10, anti-IL-12 (p40), anti-IL-15, anti-IL-17A, anti-IL-17F, anti-IL-18, anti-IL-22, and anti-TNFα. Non-parametrical tests, ROC curves and logistic regressions were performed for the statistical data analysis using SPSS. P-value < 0.05 was considered statistically significant.ResultsThe levels of anti-17A and anti-IL-1α were increased in the sera from patients who suffered a flare during the follow-up period (N= 76), compared to those who remained in remission (N= 118), showing an area under the curve (AUC) of 0.586 and 0.594, respectively. Segregating by treatment, the levels of anti-17A were specifically increased in those relapsing patients under CTZ (N=6), ABA (N=12) and TCZ (N=20) treatment. The AUC of anti-17A within these three therapies was 0.867, 0.903 and 0.682, respectively. Logistic regression analysis also associated the levels of anti-17A with the risk of suffering a flare in TCZ-treated patients (OR=1.11; p=0.015, for 100 MFI increase). In addition, the TCZ-treated patients who suffered a flare also showed higher levels of anti-IL17F, anti-IL-1α, and anti-IL-18 compared to those that remained in remission, showing AUCs of 0.689, 0.657 and 0.698, respectively. Anti-IL-18 was also associated with the risk of flare in these patients (OR=1.65; p=0.028, for 100 MFI increase). The presence of these three ACAAs was also higher in the TCZ-treated patients who suffered a flare compared to those in remission.ConclusionAlthough further validation of our results is needed, we present a ground-breaking study showing the potential of anti-IL17A, anti-IL-1α, and anti-IL18 to predict flare in RA patients under biological therapies.References[1]Bejerano C, et al. Clinical evaluation usefulness of standardized protocol strategies of dose reduction in patients with RA in clinical remission treated with biologic therapies. The Optibio Study. Arthritis Rheumatol. 2016; 68 (suppl 10): 649.Table 1.Table showing a summary of the results. CI: confidence interval• Treatments• ACAAs• AUC (CI 95%; p)Allanti-IL17A0.586 (0.504-0.668; 0.044)anti-IL-1α0.594 (0.512-0.676; 0.028)CTZanti-IL17A0.867 (0.675,1.000; 0.017)ABAanti-IL17A0.903 (0.761-1.000; 0.007)TCZanti-IL-1α0.657 (0.494-0.820; 0.049)anti-IL-17F0.689 (0.551-0.827; 0.018)anti-IL17A0.682 (0.528-0.835; 0.023)anti-IL180.698 (0.545-0.850; 0.013)Disclosure of InterestsNone declared.
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Banathy A, Gonzalez A, Patrie J, Sheeran D. Abstract No. 87 Splenic artery embolization in grade V blunt splenic injury: 10-year retrospective review. J Vasc Interv Radiol 2022. [DOI: 10.1016/j.jvir.2022.03.168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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Miranda Ruiz E, Gonzalez A, Samos P, Bellsola M, Sabate A, Leon J, Jerónimo M, Pérez-Solà V, Martin L, Corcoles D. Use of verbal de-escalation in reducing need for mechanical restraint in patients with psychotic disorders during non-voluntary transfers from home to the psychiatric emergency department. Eur Psychiatry 2022. [PMCID: PMC9567735 DOI: 10.1192/j.eurpsy.2022.1509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Introduction Little is known about the need for mechanical restraint during non-voluntary transfers from patient’s homes to the psychiatric emergency department in patients diagnosed with Paranoid Schizophrenia. Although there is no evidence of its efficacy, one of the main tools used for the reduction of mechanical restraints is verbal de-escalation training. Objectives The aim is to describe which symptoms predispose to mechanical restrain in patients with Paranoid Schizophrenia transferred in a non-voluntary manner from home to the psychiatric emergency department, and the effect on reducing mechanical restraints after receiving verbal de-escalation training. Methods All patients with Paranoid Schizophrenia who, after being visited by a home psychiatry team, have required non-voluntary transfer from their homes to the psychiatric emergency department were selected (N = 442). Results Young age, being male, having a poor adherence to treatment, higher scores for de following variables; Excitement, Grandiosity, Suspiciousness, Hostility, Abstract thinking, Motor tension, Uncooperativeness, Poor attention, Lack of insight and Poor impulse control as well as lower scores in motor retardation on the PANSS, are related to a higher frequency of mechanical restrain (P<0,005). Before the verbal de-escalation training, 43.9% of the transferred patients required mechanical restraint, after the training, the need for restraints was reduced to 25.5% (P<0.001). Conclusions Training in verbal de-escalation has allowed an important reduction in mechanical restraints in patients with schizophrenia who have required non-voluntary transfers from home to the psychiatric emergency department. Disclosure No significant relationships.
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Aly A, Moussa A, Maybody M, Youssef E, Gonzalez A, Santos E. Abstract No. 549 Intranodal lymphangiography and embolization for management of iatrogenic chylous ascites after oncological surgery. J Vasc Interv Radiol 2022. [DOI: 10.1016/j.jvir.2022.03.531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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Wood SLR, Martins KT, Dumais-Lalonde V, Tanguy O, Maure F, St-Denis A, Rayfield B, Martin AE, Gonzalez A. Missing Interactions: The Current State of Multispecies Connectivity Analysis. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.830822] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Designing effective habitat and protected area networks, which sustain species-rich communities is a critical conservation challenge. Recent decades have witnessed the emergence of new computational methods for analyzing and prioritizing the connectivity needs of multiple species. We argue that the goal of prioritizing habitat for multispecies connectivity should be focused on long-term persistence of a set of species in a landscape or seascape. Here we present a review of the literature based on 77 papers published between 2010 and 2020, in which we assess the current state and recent advances in multispecies connectivity analysis in terrestrial ecosystems. We summarize the four most employed analytical methods, compare their data requirements, and provide an overview of studies comparing results from multiple methods. We explicitly look at approaches for integrating multiple species considerations into reserve design and identify novel approaches being developed to overcome computational and theoretical challenges posed by multispecies connectivity analyses. There is a lack of common metrics for multispecies connectivity. We suggest the index of metapopulation capacity as one metric by which to assess and compare the effectiveness of proposed network designs. We conclude that, while advances have been made over the past decade, the field remains nascent by its ability to integrate multiple species interactions into analytical approaches to connectivity. Furthermore, the field is hampered its ability to provide robust connectivity assessments for lack of a clear definition and goal for multispecies connectivity conservation.
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Pardo-Galiana B, Medina-Rodriguez M, Millan-Vazquez M, Cabezas-Rodriguez JA, Lebrato-Hernandez L, Ainz-Gomez L, Zapata-Arriaza E, Ortega J, de Albóniga-Chindurza A, Montaner J, Gonzalez A, Moniche F. Antithrombotic Treatment after Carotid Stenting in Patients with Concomitant Atrial Fibrillation. AJNR Am J Neuroradiol 2022; 43:727-730. [PMID: 35393364 PMCID: PMC9089259 DOI: 10.3174/ajnr.a7482] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Accepted: 02/09/2022] [Indexed: 11/07/2022]
Abstract
BACKGROUND AND PURPOSE Antithrombotic therapy following carotid artery stent placement with concomitant atrial fibrillation is not well-established. Our aim was to assess the safety and efficacy of the combination of direct oral anticoagulants and a P2Y12 inhibitor at 30 days after carotid artery stent placement in patients with atrial fibrillation. MATERIALS AND METHODS We designed an observational single-center study including patients who underwent carotid artery stent placement with concomitant atrial fibrillation. We studied 3 groups according to antithrombotic therapy: 1) the direct oral anticoagulants plus clopidogrel (DC) group: receiving direct oral anticoagulants plus a P2Y12 inhibitor; 2) the triple therapy group: anticoagulation and dual antiplatelet therapy; and 3) the dual antiplatelet therapy group: following dual antiplatelet therapy alone. The safety outcome was a major or clinically relevant non-major bleeding event at the first month. The efficacy outcomes were the thromboembolic events (myocardial infarction, stroke, systemic embolism, or stent thrombosis). RESULTS Of 959 patients with carotid artery stent placement, 91 met the inclusion criteria, including 24 patients in the DC group, 42 patients in the triple therapy group, and 25 in the dual antiplatelet therapy group. The mean age was 72.27 (SD, 8.1 ) years, with similar baseline characteristics. The median CHA2DS2-VASc score for each group was 6 (interquartile range = 5-6), 5 (interquartile range = 4-6), and 5 (interquartile range = 4-6), respectively. The median HAS-BLED score was 4 in the 3 groups (P = .17). The primary safety end point was 23.8% in the triple therapy group compared with 4% in the dual antiplatelet therapy group (P = .032), with no bleeding events in the DC group (P = .007). There was 1 stent thrombosis in DC group and a cardioembolic stroke in the dual antiplatelet therapy group (P = .41). CONCLUSIONS Among patients with carotid artery stent placement with atrial fibrillation, triple therapy confers a high bleeding risk. A regimen of direct oral anticoagulants plus a P2Y12 inhibitor might confer a good safety profile with significantly lower rates of bleeding and optimal efficacy.
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Affiliation(s)
- B Pardo-Galiana
- From the Stroke Unit (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., F.M.)
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | - M Medina-Rodriguez
- From the Stroke Unit (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., F.M.)
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | | | - J A Cabezas-Rodriguez
- From the Stroke Unit (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., F.M.)
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | - L Lebrato-Hernandez
- From the Stroke Unit (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., F.M.)
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | - L Ainz-Gomez
- From the Stroke Unit (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., F.M.)
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | - E Zapata-Arriaza
- Interventional Neuroradiology Unit (E.Z.-A., J.O., A.d.A.-C., A.G.), Radiology Department, University Hospital Virgen del Rocio, Seville, Spain
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | - J Ortega
- Interventional Neuroradiology Unit (E.Z.-A., J.O., A.d.A.-C., A.G.), Radiology Department, University Hospital Virgen del Rocio, Seville, Spain
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | - A de Albóniga-Chindurza
- Interventional Neuroradiology Unit (E.Z.-A., J.O., A.d.A.-C., A.G.), Radiology Department, University Hospital Virgen del Rocio, Seville, Spain
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | - J Montaner
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
- Stroke Unit (J.M.), Neurology Department, University Hospital Virgen Macarena, Seville, Spain
| | - A Gonzalez
- Interventional Neuroradiology Unit (E.Z.-A., J.O., A.d.A.-C., A.G.), Radiology Department, University Hospital Virgen del Rocio, Seville, Spain
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
| | - F Moniche
- From the Stroke Unit (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., F.M.)
- Neurovascular Lab (B.P.-G., M.M.-R., J.A.C.-R., L.L.-H., L.A.-G., E.Z.-A., J.O., A.d.A.-C., J.M., A.G., F.M.), Biomedicine Institute of Seville, Seville, Spain
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Barbosa da Costa N, Hébert MP, Fugère V, Terrat Y, Fussmann GF, Gonzalez A, Shapiro BJ. A Glyphosate-Based Herbicide Cross-Selects for Antibiotic Resistance Genes in Bacterioplankton Communities. mSystems 2022; 7:e0148221. [PMID: 35266795 PMCID: PMC9040730 DOI: 10.1128/msystems.01482-21] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 02/17/2022] [Indexed: 01/22/2023] Open
Abstract
Agrochemicals often contaminate freshwater bodies, affecting microbial communities that underlie aquatic food webs. For example, the herbicide glyphosate has the potential to indirectly select for antibiotic-resistant bacteria. Such cross-selection could occur if the same genes (encoding efflux pumps, for example) confer resistance to both glyphosate and antibiotics. To test for cross-resistance in natural aquatic bacterial communities, we added a glyphosate-based herbicide (GBH) to 1,000-liter mesocosms filled with water from a pristine lake. Over 57 days, we tracked changes in bacterial communities with shotgun metagenomic sequencing and annotated metagenome-assembled genomes (MAGs) for the presence of known antibiotic resistance genes (ARGs), plasmids, and resistance mutations in the enzyme targeted by glyphosate (enolpyruvyl-shikimate-3-phosphate synthase; EPSPS). We found that high doses of GBH significantly increased ARG frequency and selected for multidrug efflux pumps in particular. The relative abundance of MAGs after a high dose of GBH was predictable based on the number of ARGs in their genomes (17% of variation explained) and, to a lesser extent, by resistance mutations in EPSPS. Together, these results indicate that GBHs can cross-select for antibiotic resistance in natural freshwater bacteria. IMPORTANCE Glyphosate-based herbicides (GBHs) such as Roundup formulations may have the unintended consequence of selecting for antibiotic resistance genes (ARGs), as demonstrated in previous experiments. However, the effects of GBHs on ARGs remain unknown in natural aquatic communities, which are often contaminated with pesticides from agricultural runoff. Moreover, the resistance provided by ARGs compared to canonical mutations in the glyphosate target enzyme, EPSPS, remains unclear. Here, we performed a freshwater mesocosm experiment showing that a GBH strongly selects for ARGs, particularly multidrug efflux pumps. These selective effects were evident after just a few days, and the ability of bacteria to survive and thrive after GBH stress was predictable by the number of ARGs in their genomes and, to a lesser extent, by mutations in EPSPS. Intensive GBH application may therefore have the unintended consequence of selecting for ARGs in natural freshwater communities.
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Affiliation(s)
- Naíla Barbosa da Costa
- Département des Sciences Biologiques, Université de Montréal, Montreal, Canada
- Groupe de Recherche Interuniversitaire en Limnologie et Environnement Aquatique (GRIL), Montreal, Canada
| | - Marie-Pier Hébert
- Groupe de Recherche Interuniversitaire en Limnologie et Environnement Aquatique (GRIL), Montreal, Canada
- Department of Biology, McGill University, Montreal, Canada
| | - Vincent Fugère
- Groupe de Recherche Interuniversitaire en Limnologie et Environnement Aquatique (GRIL), Montreal, Canada
- Québec Centre for Biodiversity Science (QCBS), Montreal, Canada
- Département des Sciences de l’Environnement, Université du Québec à Trois-Rivières, Trois-Rivières, Canada
| | - Yves Terrat
- Département des Sciences Biologiques, Université de Montréal, Montreal, Canada
| | - Gregor F. Fussmann
- Groupe de Recherche Interuniversitaire en Limnologie et Environnement Aquatique (GRIL), Montreal, Canada
- Department of Biology, McGill University, Montreal, Canada
- Québec Centre for Biodiversity Science (QCBS), Montreal, Canada
| | - Andrew Gonzalez
- Department of Biology, McGill University, Montreal, Canada
- Québec Centre for Biodiversity Science (QCBS), Montreal, Canada
| | - B. Jesse Shapiro
- Département des Sciences Biologiques, Université de Montréal, Montreal, Canada
- Groupe de Recherche Interuniversitaire en Limnologie et Environnement Aquatique (GRIL), Montreal, Canada
- Québec Centre for Biodiversity Science (QCBS), Montreal, Canada
- Department of Microbiology and Immunology, McGill University, Montreal, Canada
- McGill Genome Centre, McGill University, Montreal, Canada
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Regla-Nava JA, Wang YT, Fontes-Garfias CR, Liu Y, Syed T, Susantono M, Gonzalez A, Viramontes KM, Verma SK, Kim K, Landeras-Bueno S, Huang CT, Prigozhin DM, Gleeson JG, Terskikh AV, Shi PY, Shresta S. A Zika virus mutation enhances transmission potential and confers escape from protective dengue virus immunity. Cell Rep 2022; 39:110655. [PMID: 35417697 PMCID: PMC9093040 DOI: 10.1016/j.celrep.2022.110655] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 02/08/2022] [Accepted: 03/18/2022] [Indexed: 12/14/2022] Open
Abstract
Zika virus (ZIKV) and dengue virus (DENV) are arthropod-borne pathogenic flaviviruses that co-circulate in many countries. To understand some of the pressures that influence ZIKV evolution, we mimic the natural transmission cycle by repeating serial passaging of ZIKV through cultured mosquito cells and either DENV-naive or DENV-immune mice. Compared with wild-type ZIKV, the strains passaged under both conditions exhibit increased pathogenesis in DENV-immune mice. Application of reverse genetics identifies an isoleucine-to-valine mutation (I39V) in the NS2B proteins of both passaged strains that confers enhanced fitness and escape from pre-existing DENV immunity. Introduction of I39V or I39T, a naturally occurring homologous mutation detected in recent ZIKV isolates, increases the replication of wild-type ZIKV in human neuronal precursor cells and laboratory-raised mosquitoes. Our data indicate that ZIKV strains with enhanced transmissibility and pathogenicity can emerge in DENV-naive or -immune settings, and that NS2B-I39 mutants may represent ZIKV variants of interest.
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Affiliation(s)
- Jose Angel Regla-Nava
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Ying-Ting Wang
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Camila R Fontes-Garfias
- Department of Biochemistry and Molecular Biology, Sealy Institute for Drug Discovery, Department of Pharmacology and Toxicology and Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555, USA
| | - Yang Liu
- Department of Biochemistry and Molecular Biology, Sealy Institute for Drug Discovery, Department of Pharmacology and Toxicology and Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555, USA
| | - Thasneem Syed
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Mercylia Susantono
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Andrew Gonzalez
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Karla M Viramontes
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Shailendra Kumar Verma
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Kenneth Kim
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Sara Landeras-Bueno
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA
| | - Chun-Teng Huang
- Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA
| | - Daniil M Prigozhin
- Molecular Biophysics and Integrative Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Joseph G Gleeson
- Howard Hughes Medical Institute, Rady Children's Institute of Genomic Medicine, Department of Neurosciences, University of California, San Diego, San Diego, CA 92093, USA
| | - Alexey V Terskikh
- Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA
| | - Pei-Yong Shi
- Department of Biochemistry and Molecular Biology, Sealy Institute for Drug Discovery, Department of Pharmacology and Toxicology and Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555, USA.
| | - Sujan Shresta
- Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
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Loria A, Cristescu ME, Gonzalez A. Genotype diversity promotes the persistence of Daphnia populations exposed to severe copper stress. J Evol Biol 2022; 35:265-277. [PMID: 35000231 DOI: 10.1111/jeb.13979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Revised: 12/15/2021] [Accepted: 12/20/2021] [Indexed: 11/29/2022]
Abstract
When environmental stressors of high intensity are sustained for long periods of time, populations face high probabilities of being extirpated. However, depending on the intensity of the stressor, large populations with sufficient genetic diversity may persist. We report the results of an experiment that tracked the persistence of Daphnia populations exposed to copper contamination. We assessed whether genotypic diversity reduced the risk of extinction. We created monoclonal and multiclonal populations and monitored their population sizes during a 32-week experiment. Cu was applied at a sub-lethal concentration and then increased every week until the population sizes dropped to about 10% of the carrying capacity (Cu at 180 μg/L). The concentration was then increased up to 186 μg/L and held stable until the end of the experiment. A survival analysis showed that clonal diversity extended the persistence of Daphnia populations, but copper contamination caused a substantial genetic erosion followed by population extirpation. However, some Cu-treated populations, mostly multiclonal, showed U-shaped patterns of growth consistent with evolutionary rescue but these did not lead to lasting population recovery. These results highlight the importance of genetic variation for population persistence, but they also show how quickly it can be lost in contaminated environments.
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Affiliation(s)
| | | | - Andrew Gonzalez
- Department of Biology, McGill University, Montreal, QC, Canada
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Urban MC, Travis JMJ, Zurell D, Thompson PL, Synes NW, Scarpa A, Peres-Neto PR, Malchow AK, James PMA, Gravel D, De Meester L, Brown C, Bocedi G, Albert CH, Gonzalez A, Hendry AP. Corrigendum: Coding for Life: Designing a Platform for Projecting and Protecting Global Biodiversity. Bioscience 2021. [DOI: 10.1093/biosci/biab127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Mark C Urban
- University of Connecticut, Storrs, Connecticut, United States
| | | | | | | | | | - Alice Scarpa
- University of Aberdeen, Aberdeen, Scotland, United Kingdom
| | | | | | | | | | - Luc De Meester
- Laboratory of Aquatic Ecology, Evolution, and Conservation, KU Leuven, Leuven, Belgium, with the Leibniz-Institut für Gewässerökologie und Binnenfischerei, Berlin, Germany, and with the Institute of Biology, Freie Universität Berlin, Berlin, Germany
| | - Calum Brown
- IMK-IFU, Karlsruhe Institute of Technology, Garmisch-Partenkirchen, Germany
| | - Greta Bocedi
- University of Aberdeen, Aberdeen, Scotland, United Kingdom
| | - Cécile H Albert
- Aix Marseille Univ, CNRS, Univ Avignon, IRD, IMBE, Marseille, France
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35
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Strydom T, Catchen MD, Banville F, Caron D, Dansereau G, Desjardins-Proulx P, Forero-Muñoz NR, Higino G, Mercier B, Gonzalez A, Gravel D, Pollock L, Poisot T. A roadmap towards predicting species interaction networks (across space and time). Philos Trans R Soc Lond B Biol Sci 2021; 376:20210063. [PMID: 34538135 DOI: 10.1098/rstb.2021.0063] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Networks of species interactions underpin numerous ecosystem processes, but comprehensively sampling these interactions is difficult. Interactions intrinsically vary across space and time, and given the number of species that compose ecological communities, it can be tough to distinguish between a true negative (where two species never interact) from a false negative (where two species have not been observed interacting even though they actually do). Assessing the likelihood of interactions between species is an imperative for several fields of ecology. This means that to predict interactions between species-and to describe the structure, variation, and change of the ecological networks they form-we need to rely on modelling tools. Here, we provide a proof-of-concept, where we show how a simple neural network model makes accurate predictions about species interactions given limited data. We then assess the challenges and opportunities associated with improving interaction predictions, and provide a conceptual roadmap forward towards predictive models of ecological networks that is explicitly spatial and temporal. We conclude with a brief primer on the relevant methods and tools needed to start building these models, which we hope will guide this research programme forward. This article is part of the theme issue 'Infectious disease macroecology: parasite diversity and dynamics across the globe'.
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Affiliation(s)
- Tanya Strydom
- Sciences Biologiques, Université de Montréal, Montréal, Canada H2V 0B3.,Québec Centre for Biodiversity Sciences, Montréal, Canada
| | - Michael D Catchen
- Québec Centre for Biodiversity Sciences, Montréal, Canada.,McGill University, Montréal, Canada
| | - Francis Banville
- Sciences Biologiques, Université de Montréal, Montréal, Canada H2V 0B3.,Québec Centre for Biodiversity Sciences, Montréal, Canada.,Université de Sherbrooke, Sherbrooke, Canada
| | - Dominique Caron
- Québec Centre for Biodiversity Sciences, Montréal, Canada.,McGill University, Montréal, Canada
| | - Gabriel Dansereau
- Sciences Biologiques, Université de Montréal, Montréal, Canada H2V 0B3.,Québec Centre for Biodiversity Sciences, Montréal, Canada
| | - Philippe Desjardins-Proulx
- Sciences Biologiques, Université de Montréal, Montréal, Canada H2V 0B3.,Québec Centre for Biodiversity Sciences, Montréal, Canada
| | - Norma R Forero-Muñoz
- Sciences Biologiques, Université de Montréal, Montréal, Canada H2V 0B3.,Québec Centre for Biodiversity Sciences, Montréal, Canada
| | | | - Benjamin Mercier
- Québec Centre for Biodiversity Sciences, Montréal, Canada.,Université de Sherbrooke, Sherbrooke, Canada
| | - Andrew Gonzalez
- Québec Centre for Biodiversity Sciences, Montréal, Canada.,McGill University, Montréal, Canada
| | - Dominique Gravel
- Québec Centre for Biodiversity Sciences, Montréal, Canada.,Université de Sherbrooke, Sherbrooke, Canada
| | - Laura Pollock
- Québec Centre for Biodiversity Sciences, Montréal, Canada.,McGill University, Montréal, Canada
| | - Timothée Poisot
- Sciences Biologiques, Université de Montréal, Montréal, Canada H2V 0B3.,Québec Centre for Biodiversity Sciences, Montréal, Canada
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36
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Firkowski CR, Thompson PL, Gonzalez A, Cadotte MW, Fortin M. Multi‐trophic metacommunity interactions mediate asynchrony and stability in fluctuating environments. ECOL MONOGR 2021. [DOI: 10.1002/ecm.1484] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Carina R. Firkowski
- Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario M5S 3B2 Canada
| | - Patrick L. Thompson
- Biodiversity Research Centre and Department of Zoology University of British Columbia Vancouver British Columbia V6T 1Z4 Canada
| | - Andrew Gonzalez
- Department of Biology McGill University Montreal Quebec H3A 1B1 Canada
| | - Marc W. Cadotte
- Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario M5S 3B2 Canada
- Department of Biological Sciences University of Toronto at Scarborough Scarborough Ontario M1C 1A4 Canada
| | - Marie‐Josée Fortin
- Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario M5S 3B2 Canada
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37
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Urban MC, Travis JMJ, Zurell D, Thompson PL, Synes NW, Scarpa A, Peres-Neto PR, Malchow AK, James PMA, Gravel D, De Meester L, Brown C, Bocedi G, Albert CH, Gonzalez A, Hendry AP. Coding for Life: Designing a Platform for Projecting and Protecting Global Biodiversity. Bioscience 2021. [DOI: 10.1093/biosci/biab099] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Time is running out to limit further devastating losses of biodiversity and nature's contributions to humans. Addressing this crisis requires accurate predictions about which species and ecosystems are most at risk to ensure efficient use of limited conservation and management resources. We review existing biodiversity projection models and discover problematic gaps. Current models usually cannot easily be reconfigured for other species or systems, omit key biological processes, and cannot accommodate feedbacks with Earth system dynamics. To fill these gaps, we envision an adaptable, accessible, and universal biodiversity modeling platform that can project essential biodiversity variables, explore the implications of divergent socioeconomic scenarios, and compare conservation and management strategies. We design a roadmap for implementing this vision and demonstrate that building this biodiversity forecasting platform is possible and practical.
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Affiliation(s)
- Mark C Urban
- University of Connecticut, Storrs, Connecticut, United States
| | | | | | | | | | - Alice Scarpa
- University of Aberdeen, Aberdeen, Scotland, United Kingdom
| | | | | | | | | | - Luc De Meester
- Laboratory of Aquatic Ecology, Evolution, and Conservation, KU Leuven, Leuven, Belgium, with the Leibniz-Institut für Gewässerökologie und Binnenfischerei, Berlin, Germany, and with the Institute of Biology, Freie Universität Berlin, Berlin, Germany
| | - Calum Brown
- IMK-IFU, Karlsruhe Institute of Technology, Garmisch-Partenkirchen, Germany
| | - Greta Bocedi
- University of Aberdeen, Aberdeen, Scotland, United Kingdom
| | - Cécile H Albert
- Aix Marseille Univ, CNRS, Univ Avignon, IRD, IMBE, Marseille, France
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38
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O'Connor MI, Mori AS, Gonzalez A, Dee LE, Loreau M, Avolio M, Byrnes JEK, Cheung W, Cowles J, Clark AT, Hautier Y, Hector A, Komatsu K, Newbold T, Outhwaite CL, Reich PB, Seabloom E, Williams L, Wright A, Isbell F. Grand challenges in biodiversity-ecosystem functioning research in the era of science-policy platforms require explicit consideration of feedbacks. Proc Biol Sci 2021; 288:20210783. [PMID: 34641733 PMCID: PMC8511742 DOI: 10.1098/rspb.2021.0783] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Feedbacks are an essential feature of resilient socio-economic systems, yet the feedbacks between biodiversity, ecosystem services and human wellbeing are not fully accounted for in global policy efforts that consider future scenarios for human activities and their consequences for nature. Failure to integrate feedbacks in our knowledge frameworks exacerbates uncertainty in future projections and potentially prevents us from realizing the full benefits of actions we can take to enhance sustainability. We identify six scientific research challenges that, if addressed, could allow future policy, conservation and monitoring efforts to quantitatively account for ecosystem and societal consequences of biodiversity change. Placing feedbacks prominently in our frameworks would lead to (i) coordinated observation of biodiversity change, ecosystem functions and human actions, (ii) joint experiment and observation programmes, (iii) more effective use of emerging technologies in biodiversity science and policy, and (iv) a more inclusive and integrated global community of biodiversity observers. To meet these challenges, we outline a five-point action plan for collaboration and connection among scientists and policymakers that emphasizes diversity, inclusion and open access. Efforts to protect biodiversity require the best possible scientific understanding of human activities, biodiversity trends, ecosystem functions and—critically—the feedbacks among them.
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Affiliation(s)
- Mary I O'Connor
- Department of Zoology, University of British Columbia, Vancouver, Canada.,Biodiversity Research Centre, University of British Columbia, Vancouver, Canada
| | - Akira S Mori
- Graduate School of Environment and Information Sciences, Yokohama National University, Yokohama, Japan
| | - Andrew Gonzalez
- Department of Biology, McGill University, Montreal, QC, Canada
| | - Laura E Dee
- Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO, USA
| | - Michel Loreau
- Theoretical and Empirical Ecology Station, CNRS, Moulis, France
| | - Meghan Avolio
- Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Jarrett E K Byrnes
- College of Science and Mathematics, University of Massachusetts-Boston, Boston, MA, USA
| | - William Cheung
- Biodiversity Research Centre, University of British Columbia, Vancouver, Canada.,Institute for the Oceans and Fisheries, University of British Columbia, Vancouver, Canada
| | - Jane Cowles
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN, USA
| | - Adam T Clark
- Institute of Biology, University of Graz, Holteigasse 6, 8010 Graz, Austria
| | - Yann Hautier
- Ecology and Biodiversity Group, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
| | - Andrew Hector
- Department of Plant Sciences, University of Oxford, Oxford, UK
| | | | - Tim Newbold
- Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, London, UK
| | - Charlotte L Outhwaite
- Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, London, UK
| | - Peter B Reich
- Department of Forest Resources, University of Minnesota, St Paul, MN 55108 USA.,Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2753, Australia.,Institute for Global Change Biology, University of Michigan, Ann Arbor, MI 48109, USA.,School for Environment and Sustainability, University of Michigan, Ann Arbor, MI 48109, USA
| | - Eric Seabloom
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN, USA
| | - Laura Williams
- Department of Forest Resources, University of Minnesota, St Paul, MN 55108 USA
| | - Alexandra Wright
- Biological Sciences Department, California State University Los Angeles, 5151 State University Drive, Los Angeles, CA, USA
| | - Forest Isbell
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN, USA
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Romero-Gonzalez G, Diaz-Dorronsoro I, Ravassa S, Lopez B, Gonzalez A, Diez J. Association of soluble ST2 and right ventricular dysfunction with mortality in chronic hemodialysis patients. Eur Heart J 2021. [DOI: 10.1093/eurheartj/ehab724.2911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Background
End stage kidney disease (ESKD), is a triggering and facilitating factor for cardiac remodelling (i.e., morphologic hypertrophy and/or dilatation associated with deterioration of systolic and/or diastolic function) that contribute to heart failure (HF). RV dysfunction (RVD) has been demonstrated to predict mortality in ESKD patients.
Purpose
The present study aimed to investigate the potential associations between RVD and circulating biomarkers of myocardial inflammation and fibrosis with all-cause mortality in HD patients.
Method
We performed a retrospective single-centre cohort study of prevalent patients admitted in a chronic HD program for more than 3 months. Clinical characteristics and echocardiographic parameters were assessed in all patients. Pre-dialysis blood samples for measurement of inflammatory (e.g., C reactive protein, interleukin-1, interleukin-18) and fibrotic (e.g., soluble suppression of tumorigenesis-2 [sST2], galectin-3, C-terminal pro-peptide of procollagen type I and N-terminal pro-peptide of procollagen type III) biomarkers were collected. RVD was defined using tricuspid annular plane systolic excursion (TAPSE) <1.7 cm or pulsed Doppler peak annular velocity (S') <9.5 cm/s. The ability of sST2 to discriminate between mortality was assessed using AuROC curve.
Results
We enrolled forty-eight patients, mean patients age was 74 (64 – 79)years, and 62.5% were males. 95.8% of the patients had high blood pressure, and at least 70.8% had HF criteria. About 52.1% of the patients were on OnLine HDF. Regarding the echocardiogram parameters, 56.3% had no functional heart disease, 10.4% had LVD (LVEF ≤45% and diastolic dysfunction ≥ grade 2), and 33.3% had RVD (TAPSE <17mm and/or S'<9.5cm/s), with or without LVD. Mortality was higher 45.5% (log-rank, p=0.003) in patients with RVD as diagnosed by S' than in patients without RVD. No difference in mortality was observed for RVD defined by TAPSE. There were no differences in the morphology and function parameters of the left ventricle between patients with and without RVD. From all biomarkers measured only sST2 was associated with RVD. Indeed, an age- and sex-adjusted analyses showed that doubling of sST2 was inversely associated with a decreased in S' (estimate = −2.03, 95% CI [−3.04 to −1.00] cm/s; P=0.002). Mortality was increased in patients with sST2 ≥40.45 ng/mL compared to patients with sST2 <40.45 ng/mL (66.7% vs. 18.9%, log-rank; p=0.004).
Conclusion
This preliminary data would suggest that patients on chronic HD, circulating levels of sST2 were independently associated with RVD. In addition, elevated sST2 levels and RVD were associated with increased all-cause mortality. The myocardial pro-remodelling effect of sST2 in HD patients with RVD warrants further investigation.
Funding Acknowledgement
Type of funding sources: None.
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Affiliation(s)
| | - I Diaz-Dorronsoro
- University of Navarra Clinic, Cardiology Department, Pamplona, Spain
| | - S Ravassa
- Center for Applied Medical Research, Cardiovascular diseases, Pamplona, Spain
| | - B Lopez
- Center for Applied Medical Research, Cardiovascular diseases, Pamplona, Spain
| | - A Gonzalez
- Center for Applied Medical Research, Cardiovascular diseases, Pamplona, Spain
| | - J Diez
- Center for Applied Medical Research, Cardiovascular diseases, Pamplona, Spain
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40
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Antonana S, Monteagudo JM, Arteagoitia A, Gonzalez A, Ortega R, Rivas S, Martinez-Moya RR, Sanroman MA, Lorente-Ros A, Rincon LM, Zamorano JL. Impact of previous cardiac conditions in prognosis and clinical management of patient with COVID-19 infection. Eur Heart J 2021. [DOI: 10.1093/eurheartj/ehab724.1123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Background
Recent studies suggest a higher mortality rate because of COVID-19 in patients with previous cardiac conditions compared to those without. Given the limited resources of intensive care units (ICU) during the pandemic outbreak, this fact has important implications.
Purpose
The main purpose of this study was to compare the 30-day mortality of the COVID-19 infection in patients with and without previous cardiac conditions. The secondary end point was to assess the differences in clinical severity of the infection (as development of Acute Respiratory Distress Syndrome – ARDS) and ICU admission amongst these patients.
Methods
A total of 1708 consecutive patients were prospectively included. The inclusion criteria were: a confirmed positive diagnosis of COVID-19 infection by PCR and being admitted to our centre between 18th and 23rd March 2020 and 22nd August and 9th January 2021. Patients were classified in two groups according to the presence of previous cardiac conditions (defined as previous history of myocardial infarction, heart failure and atrial fibrillation). Other comorbidities were extensively explored and Charlson Comorbidity Index was calculated. A propensity-score matching was performed and 145 patients with previous cardiac conditions were matched with 145 patients without.
Results
The group of patients with a previous cardiac condition included 421 patients (24.6%). The crude analysis showed a higher 30-day mortality rate among patients with previous cardiac affections (35.6% vs. 14.6%, p<0.001). They were also less likely to be admitted to the ICU (9.8% vs. 6.2%, p=0.022) and had a higher prevalence ARDS (48.9% vs. 33.9%, p<0.001). In the matched cohort, there were no significant differences between both groups regarding mortality (24.8% in the group of patients with previous cardiac conditions vs. 31.0%, p=0.272) nor ARDS prevalence (50.3% vs. 53.1%, p=0.655). There was a trend toward patients with previous cardiac conditions to be less likely to be admitted to the ICU (4.8% vs. 9.7%, p=0.090).
Conclusions
Patients with a personal history of previous cardiac conditions were less likely to be admitted to the ICU. However, our results show that when comparing cohorts with similar comorbidity burden, a previous cardiopathy “per se” does not significantly increase the risk of death in patients with a concomitant COVID infection.
Funding Acknowledgement
Type of funding sources: None. Mortality unmatched vs matched cohort
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Affiliation(s)
- S Antonana
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - J M Monteagudo
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - A Arteagoitia
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - A Gonzalez
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - R Ortega
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - S Rivas
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - R R Martinez-Moya
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - M A Sanroman
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - A Lorente-Ros
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - L M Rincon
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
| | - J L Zamorano
- University Hospital Ramon y Cajal de Madrid, Cardiology, Madrid, Spain
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41
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Reese-Petersen A, Gonzalez A, Lopez B, Ravassa S, Karsdal M, Genovese F, Diez J. Endotrophin is significantly associated with disease severity and increased risk of adverse outcome in HFpEF but not in HFrEF patients. Eur Heart J 2021. [DOI: 10.1093/eurheartj/ehab724.0732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Introduction
The global burden of heart failure (HF), with either reduced (HFrEF) or preserved (HFpEF) ejection fraction, has increased dramatically over the past years, and HFpEF is projected to become the dominant type of HF. Fibrogenesis, promoted by fibroblast activity, plays an important role in the pathology of HF regardless of subtype, causing impaired cardiac function. Endotrophin is a bioactive molecule released from collagen type VI during its maturation, and it is a marker of fibroblast activity. The aim of this post-hoc analysis was to confirm the previously observed prognostic potential of endotrophin (measured by PRO-C6) for adverse outcome in HFpEF and to test its prognostic abilities in HFrEF.
Methods
234 patients with hypertension and either HFrEF (30.3%) or HFpEF (69.7%) were included for analysis. 43.2% were NYHA Class II, 52.5% NYHA Class III and 2.5% NYHA Class IV. 53.4% of patients had a previous history of atrial fibrillation. The cohort did not include diabetic patients. Cardiac function was assessed by echocardiography and standard clinical measures, including left ventricle ejection fraction (EF), blood pressure (BP) and measurement of N-terminal natriuretic brain-peptide (NT-proBNP). Circulating endotrophin was quantified at baseline in serum by means of an enzyme-linked immunosorbent assay, PRO-C6.
Results
PRO-C6 levels increased significantly with disease severity in HFpEF patients (NYHA Class III vs II, p=0.0003), but not in HFrEF patients (NYHA Class III vs II, p=0.33). In HFpEF patients, PRO-C6 was able to discriminate between patients that were hospitalized for HF (AUC=0.69, p<0.001), died from cardiovascular (CV) causes (AUC=0.74, p<0.001), or by any other cause (AUC=0.73, p<0.001). PRO-C6 was not associated with none of these outcomes in HFrEF patients (AUC=0.56, p=0.42; AUC=0.53, p=0.73; AUC=0.56, p=0.53, respectively). Adding PRO-C6 to a risk prediction model containing age, sex, body mass index and systolic BP significantly increased the discriminatory power of the model for mortality (deltaAUC=0.037, p=0.04). When looking at patients stratified in PRO-C6 tertiles, patients in the upper tertile had a significantly higher risk of mortality (p<0.0001, hazard ratios 3 vs 1=4.1, 3 vs 2=3.5, respectively) and HF hospitalization (p<0.0001, hazard ratio 3 vs 1=4.4, 3 vs 2=1.6, respectively) compared to tertiles 1 and 2.
Conclusion
In this population of hypertensive HF patients, circulating endotrophin, measured by PRO-C6, was increased with increasing disease severity, and associated with a higher risk of adverse outcome in HFpEF, but not in HFrEF patients. The data presented here suggest a potential role of endotrophin in HFpEF pathophysiology and further underline the differences between HFpEF and HFrEF. These data confirm previous observations, and strengthen the usefulness of endotrophin, measured by the PRO-C6 biomarker, as a prognostic tool aiding in assessment of HFpEF patients.
Funding Acknowledgement
Type of funding sources: None.
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Affiliation(s)
| | | | | | | | - M Karsdal
- Nordic Bioscience, Copenhagen, Denmark
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Pérez-Segura P, Paz-Cabezas M, Núñez-Gil IJ, Arroyo-Espliguero R, Maroun Eid C, Romero R, Fernández Rozas I, Uribarri A, Becerra-Muñoz VM, García Aguado M, Huang J, Rondano E, Cerrato E, Rodríguez EA, Ortega-Armas ME, Raposeiras Roubin S, Pepe M, Feltes G, Gonzalez A, Cortese B, Buzón L, El-Battrawy I, Estrada V. Prognostic factors at admission on patients with cancer and COVID-19: Analysis of HOPE registry data. ACTA ACUST UNITED AC 2021; 157:318-324. [PMID: 34632069 PMCID: PMC8489183 DOI: 10.1016/j.medcle.2021.02.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 02/24/2021] [Indexed: 01/08/2023]
Abstract
Background Previous works seem to agree in the higher mortality of cancer patients with COVID-19. Identifying potential prognostic factors upon admission could help identify patients with a poor prognosis. Methods We aimed to explore the characteristics and evolution of COVID-19 cancer patients admitted to hospital in a multicenter international registry (HOPE COVID-19). Our primary objective is to define those characteristics that allow us to identify cancer patients with a worse prognosis (mortality within 30 days after the diagnosis of COVID-19). Results 5838 patients have been collected in this registry, of whom 770 had cancer among their antecedents. In hospital mortality reached 258 patients (33.51%). The median was 75 years (65–82). Regarding the distribution by sex, 34.55% of the patients (266/770) were women. The distribution by type of cancer: genitourinary 238/745 (31.95%), digestive 124/745 (16.54%), hematologic 95/745 (12.75%). In multivariate regression analysis, factors that are independently associated with mortality at admission are: renal impairment (OR 3.45, CI 97.5% 1.85–6.58), heart disease (2.32, 1.47–3.66), liver disease (4.69, 1.94–11.62), partial dependence (2.41, 1.34–4.33), total dependence (7.21, 2.60–21.82), fatigue (1.84, 1.16–2.93), arthromialgias (0.45, 0.26–0.78), SatO2 < 92% (4.58, 2.97–7.17), elevated LDH (2.61, 1.51–4.69) and abnormal decreased Blood Pressure (3.57, 1.81–7.15). Analitical parameters are also significant altered. Conclusion In patients with cancer from the HOPE registry, 30-day mortality from any cause is high and is associated with easily identifiable clinical factors upon arrival at the hospital. Identifying these patients can help initiate more intensive treatments from the start and evaluate the prognosis of these patients.
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Affiliation(s)
| | - M Paz-Cabezas
- Medical Oncology Dpt. Hospital Clinico San Carlos, Madrid, Spain
| | | | | | - C Maroun Eid
- Hospital Universitario La Paz. Instituto de Investigación Hospital Universitario La Paz (IdiPAZ), Madrid, Spain
| | - R Romero
- Hospital Universitario Getafe, Madrid, Spain
| | | | - A Uribarri
- Hospital Clinico Universitario de Valladolid, Valladolid, Spain
| | | | - M García Aguado
- Hospital Puerta de Hierro de Majadahonda. Majadahonda, Madrid, Spain
| | - J Huang
- The Second Affiliated Hospital of Southern University of Science and Technology, Shenzhen, China
| | - E Rondano
- Sant'Andrea Hospital, Vercelli, Italy
| | - E Cerrato
- San Luigi Gonzaga University Hospital, Orbassano and Rivoli Infermi Hospital, Rivoli, Turin, Italy
| | | | - M E Ortega-Armas
- Hospital General del Norte de Guayaquil IESS Los Ceibos, Guayaquil, Ecuador
| | | | - M Pepe
- Azienda ospedaliero-universitaria consorziale policlinico di Bari, Bari, Italy
| | - G Feltes
- Nuestra Señora de América, Madrid, Spain
| | - A Gonzalez
- Hospital Universitario Infanta Sofia. San Sebastian de los Reyes, Madrid, Spain
| | | | - L Buzón
- Hospital Universitario de Burgos, Burgos, Spain
| | - I El-Battrawy
- First Department of Medicine, Medical Faculty Mannheim, University Heidelberg, Mannheim, 68167, Germany, DZHK (German Center for Cardiovascular Research), Partner Site, Heidelberg-Mannheim, Mannheim, Germany
| | - V Estrada
- Hospital Clinico San Carlos, Madrid, Spain
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43
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Hébert MP, Fugère V, Beisner BE, Barbosa da Costa N, Barrett RDH, Bell G, Shapiro BJ, Yargeau V, Gonzalez A, Fussmann GF. Widespread agrochemicals differentially affect zooplankton biomass and community structure. Ecol Appl 2021; 31:e02423. [PMID: 34288209 DOI: 10.1002/eap.2423] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Revised: 02/08/2021] [Accepted: 03/03/2021] [Indexed: 06/13/2023]
Abstract
Anthropogenic environmental change is causing habitat deterioration at unprecedented rates in freshwater ecosystems. Despite increasing more rapidly than many other agents of global change, synthetic chemical pollution-including agrochemicals such as pesticides-has received relatively little attention in freshwater community and ecosystem ecology. Determining the combined effects of multiple agrochemicals on complex biological systems remains a major challenge, requiring a cross-field integration of ecology and ecotoxicology. Using a large-scale array of experimental ponds, we investigated the response of zooplankton community properties (biomass, composition, and diversity metrics) to the individual and joint presence of three globally widespread agrochemicals: the herbicide glyphosate, the neonicotinoid insecticide imidacloprid, and nutrient fertilizers. We tracked temporal variation in zooplankton biomass and community structure along single and combined pesticide gradients (each spanning eight levels), under low (mesotrophic) and high (eutrophic) nutrient-enriched conditions, and quantified (1) response threshold concentrations, (2) agrochemical interactions, and (3) community resistance and recovery. We found that the biomass of major zooplankton groups differed in their sensitivity to pesticides: ≥0.3 mg/L glyphosate elicited long-lasting declines in rotifer communities, both pesticides impaired copepods (≥3 µg/L imidacloprid and ≥5.5 mg/L glyphosate), whereas some cladocerans were highly tolerant to pesticide contamination. Strong interactive effects of pesticides were only recorded in ponds treated with the combination of the highest doses. Overall, glyphosate was the most influential driver of aggregate community properties of zooplankton, with biomass and community structure responding rapidly but recovering unequally over time. Total community biomass showed little resistance when first exposed to glyphosate, but rapidly recovered and even increased with glyphosate concentration over time; in contrast, taxon richness decreased in more contaminated ponds but failed to recover. Our results indicate that the biomass of tolerant taxa compensated for the loss of sensitive species after the first exposure, conferring greater community resistance upon a subsequent contamination event; a case of pollution-induced community tolerance in freshwater animals. These findings suggest that zooplankton biomass may be more resilient to agrochemical pollution than community structure; yet all community properties measured in this study were affected at glyphosate concentrations below common water quality guidelines in North America.
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Affiliation(s)
- Marie-Pier Hébert
- Department of Biology, McGill University, Montréal, Québec, H3A 1B1, Canada
- Groupe de Recherche Interuniversitaire en Limnologie (GRIL), Montréal, Québec, H2V 0B3, Canada
- Department of Biological Sciences, University of Québec at Montreal, Montréal, Québec, H3C 3V8, Canada
| | - Vincent Fugère
- Department of Biology, McGill University, Montréal, Québec, H3A 1B1, Canada
- Groupe de Recherche Interuniversitaire en Limnologie (GRIL), Montréal, Québec, H2V 0B3, Canada
- Department of Biological Sciences, University of Québec at Montreal, Montréal, Québec, H3C 3V8, Canada
- Québec Centre for Biodiversity Science (QCBS), Montréal, Québec, H3A 1B1, Canada
- Département des Sciences de L'environnement, Université du Québec à Trois-Rivières, Trois-Rivières, Québec, G9A 5H7, Canada
| | - Beatrix E Beisner
- Groupe de Recherche Interuniversitaire en Limnologie (GRIL), Montréal, Québec, H2V 0B3, Canada
- Department of Biological Sciences, University of Québec at Montreal, Montréal, Québec, H3C 3V8, Canada
- Québec Centre for Biodiversity Science (QCBS), Montréal, Québec, H3A 1B1, Canada
| | - Naíla Barbosa da Costa
- Groupe de Recherche Interuniversitaire en Limnologie (GRIL), Montréal, Québec, H2V 0B3, Canada
- Département des Sciences Biologiques, Université de Montréal, Montréal, Québec, H2V 0B3, Canada
| | - Rowan D H Barrett
- Department of Biology, McGill University, Montréal, Québec, H3A 1B1, Canada
- Groupe de Recherche Interuniversitaire en Limnologie (GRIL), Montréal, Québec, H2V 0B3, Canada
- Québec Centre for Biodiversity Science (QCBS), Montréal, Québec, H3A 1B1, Canada
- Redpath Museum, McGill University, Montréal, Québec, H3A 0C4, Canada
| | - Graham Bell
- Department of Biology, McGill University, Montréal, Québec, H3A 1B1, Canada
- Québec Centre for Biodiversity Science (QCBS), Montréal, Québec, H3A 1B1, Canada
| | - B Jesse Shapiro
- Groupe de Recherche Interuniversitaire en Limnologie (GRIL), Montréal, Québec, H2V 0B3, Canada
- Département des Sciences Biologiques, Université de Montréal, Montréal, Québec, H2V 0B3, Canada
- Department of Microbiology and Immunology, McGill Genome Centre, Montréal, Québec, H3A 0G1, Canada
| | - Viviane Yargeau
- Department of Chemical Engineering, McGill University, Montréal, Québec, H3A 0C5, Canada
| | - Andrew Gonzalez
- Department of Biology, McGill University, Montréal, Québec, H3A 1B1, Canada
- Québec Centre for Biodiversity Science (QCBS), Montréal, Québec, H3A 1B1, Canada
| | - Gregor F Fussmann
- Department of Biology, McGill University, Montréal, Québec, H3A 1B1, Canada
- Groupe de Recherche Interuniversitaire en Limnologie (GRIL), Montréal, Québec, H2V 0B3, Canada
- Québec Centre for Biodiversity Science (QCBS), Montréal, Québec, H3A 1B1, Canada
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Loreau M, Barbier M, Filotas E, Gravel D, Isbell F, Miller SJ, Montoya JM, Wang S, Aussenac R, Germain R, Thompson PL, Gonzalez A, Dee LE. Biodiversity as insurance: from concept to measurement and application. Biol Rev Camb Philos Soc 2021; 96:2333-2354. [PMID: 34080283 PMCID: PMC8519139 DOI: 10.1111/brv.12756] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 05/25/2021] [Accepted: 05/26/2021] [Indexed: 01/09/2023]
Abstract
Biological insurance theory predicts that, in a variable environment, aggregate ecosystem properties will vary less in more diverse communities because declines in the performance or abundance of some species or phenotypes will be offset, at least partly, by smoother declines or increases in others. During the past two decades, ecology has accumulated strong evidence for the stabilising effect of biodiversity on ecosystem functioning. As biological insurance is reaching the stage of a mature theory, it is critical to revisit and clarify its conceptual foundations to guide future developments, applications and measurements. In this review, we first clarify the connections between the insurance and portfolio concepts that have been used in ecology and the economic concepts that inspired them. Doing so points to gaps and mismatches between ecology and economics that could be filled profitably by new theoretical developments and new management applications. Second, we discuss some fundamental issues in biological insurance theory that have remained unnoticed so far and that emerge from some of its recent applications. In particular, we draw a clear distinction between the two effects embedded in biological insurance theory, i.e. the effects of biodiversity on the mean and variability of ecosystem properties. This distinction allows explicit consideration of trade-offs between the mean and stability of ecosystem processes and services. We also review applications of biological insurance theory in ecosystem management. Finally, we provide a synthetic conceptual framework that unifies the various approaches across disciplines, and we suggest new ways in which biological insurance theory could be extended to address new issues in ecology and ecosystem management. Exciting future challenges include linking the effects of biodiversity on ecosystem functioning and stability, incorporating multiple functions and feedbacks, developing new approaches to partition biodiversity effects across scales, extending biological insurance theory to complex interaction networks, and developing new applications to biodiversity and ecosystem management.
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Affiliation(s)
- Michel Loreau
- Theoretical and Experimental Ecology Station, CNRS2 route du CNRSMoulis09200France
| | - Matthieu Barbier
- Theoretical and Experimental Ecology Station, CNRS2 route du CNRSMoulis09200France
| | - Elise Filotas
- Center for Forest ResearchUniversité du Québec (TELUQ)5800 Saint‐DenisMontrealQCH2S 3L5Canada
| | - Dominique Gravel
- Département de BiologieUniversité de Sherbrooke2500 Boulevard de l'UniversitéSherbrookeQCJ1K 2R1Canada
| | - Forest Isbell
- Department of Ecology, Evolution and BehaviorUniversity of Minnesota1479 Gortner AveSt. PaulMN55108U.S.A.
| | - Steve J. Miller
- Environmental Studies ProgramUniversity of Colorado, Boulder4001 Discovery DriveBoulderCO80303U.S.A.
| | - Jose M. Montoya
- Theoretical and Experimental Ecology Station, CNRS2 route du CNRSMoulis09200France
| | - Shaopeng Wang
- Institute of Ecology, College of Urban and Environmental Sciences and Key Laboratory for Earth Surface Processes of the Ministry of EducationPeking UniversityBeijing100871China
| | - Raphaël Aussenac
- Université Grenoble Alpes, INRAE, LESSEMSt‐Martin‐d'HèresF‐38402France
| | - Rachel Germain
- Biodiversity Research Centre and Department of ZoologyUniversity of British Columbia6270 University Blvd.VancouverBCV6T 1Z4Canada
| | - Patrick L. Thompson
- Biodiversity Research Centre and Department of ZoologyUniversity of British Columbia6270 University Blvd.VancouverBCV6T 1Z4Canada
| | - Andrew Gonzalez
- Department of BiologyMcGill University1205 Dr. Penfield AvenueMontrealQCH3A 1B1Canada
| | - Laura E. Dee
- Department of Ecology and Evolutionary BiologyUniversity of Colorado, Boulder1900 Pleasant St.BoulderCO80303U.S.A.
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Gutwein A, Motaganahalli A, Severance S, Westin GG, Gonzalez A, Maijub J. Left Subclavian to Right Carotid Artery Retropharyngeal Bypass. J Vasc Surg 2021. [DOI: 10.1016/j.jvs.2021.06.051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Quiroga E, Gonzalez A, Newhall K, Shalhub S. Understanding and finding opportunities for inclusive mentorship and sponsorships in vascular surgery. J Vasc Surg 2021; 74:56S-63S. [PMID: 34303460 DOI: 10.1016/j.jvs.2021.03.048] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 03/13/2021] [Indexed: 10/20/2022]
Abstract
Deliberate efforts are needed to address the lack of diversity in the vascular surgery workforce and to correct the current scarcity of diversity in vascular surgery leadership. Effective mentorship and sponsorship are crucial for success in academic surgery. In the present report, we have explained the importance of mentorship and sponsorship relationships for surgeons historically underrepresented in medicine, discussed the unique challenges faced by them in academic surgery, and provided a practical framework for fostering intentional and thoughtful mentor and sponsor relationships to nurture their careers.
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Affiliation(s)
- Elina Quiroga
- Division of Vascular Surgery, Department of Surgery, University of Washington School of Medicine, Seattle, Wash.
| | - Andrew Gonzalez
- Division of Vascular Surgery, Department of Surgery, Indiana University School of Medicine, Indianapolis, Ind; William M. Tierney Center for Health Services Research, Regenstrief Institute, Indianapolis, Ind
| | - Karina Newhall
- Division of Vascular Surgery, Department of Surgery, University of Washington School of Medicine, Seattle, Wash
| | - Sherene Shalhub
- Division of Vascular Surgery, Department of Surgery, University of Washington School of Medicine, Seattle, Wash
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47
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Barbosa da Costa N, Fugère V, Hébert MP, Xu CCY, Barrett RDH, Beisner BE, Bell G, Yargeau V, Fussmann GF, Gonzalez A, Shapiro BJ. Resistance, resilience, and functional redundancy of freshwater bacterioplankton communities facing a gradient of agricultural stressors in a mesocosm experiment. Mol Ecol 2021; 30:4771-4788. [PMID: 34324752 DOI: 10.1111/mec.16100] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 06/30/2021] [Accepted: 07/23/2021] [Indexed: 01/04/2023]
Abstract
Agricultural pollution with fertilizers and pesticides is a common disturbance to freshwater biodiversity. Bacterioplankton communities are at the base of aquatic food webs, but their responses to these potentially interacting stressors are rarely explored. To test the extent of resistance and resilience in bacterioplankton communities faced with agricultural stressors, we exposed freshwater mesocosms to single and combined gradients of two commonly used pesticides: the herbicide glyphosate (0-15 mg/L) and the neonicotinoid insecticide imidacloprid (0-60 μg/L), in high or low nutrient backgrounds. Over the 43-day experiment, we tracked variation in bacterial density with flow cytometry, carbon substrate use with Biolog EcoPlates, and taxonomic diversity and composition with environmental 16S rRNA gene amplicon sequencing. We show that only glyphosate (at the highest dose, 15 mg/L), but not imidacloprid, nutrients, or their interactions measurably changed community structure, favouring members of the Proteobacteria including the genus Agrobacterium. However, no change in carbon substrate use was detected throughout, suggesting functional redundancy despite taxonomic changes. We further show that communities are resilient at broad, but not fine taxonomic levels: 24 days after glyphosate application the precise amplicon sequence variants do not return, and tend to be replaced by phylogenetically close taxa. We conclude that high doses of glyphosate - but still within commonly acceptable regulatory guidelines - alter freshwater bacterioplankton by favouring a subset of higher taxonomic units (i.e., genus to phylum) that transiently thrive in the presence of glyphosate. Longer-term impacts of glyphosate at finer taxonomic resolution merit further investigation.
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Affiliation(s)
- Naíla Barbosa da Costa
- Département des Sciences Biologiques, Université de Montréal, Montreal, QC, Canada.,Groupe de Recherche Interuniversitaire en Limnologie et environnement aquatique (GRIL), Montreal, QC, Canada
| | - Vincent Fugère
- Groupe de Recherche Interuniversitaire en Limnologie et environnement aquatique (GRIL), Montreal, QC, Canada.,Québec Centre for Biodiversity Science (QCBS), Montreal, QC, Canada.,Département des Sciences Biologiques, Université du Québec à Montréal, Montreal, QC, Canada.,Département des Sciences de l'environnement, Université du Québec à Trois-Rivières, Trois-Rivières, QC, Canada
| | - Marie-Pier Hébert
- Groupe de Recherche Interuniversitaire en Limnologie et environnement aquatique (GRIL), Montreal, QC, Canada.,Department of Biology, McGill University, Montreal, QC, Canada
| | - Charles C Y Xu
- Québec Centre for Biodiversity Science (QCBS), Montreal, QC, Canada.,Department of Biology, McGill University, Montreal, QC, Canada.,Redpath Museum, McGill University, Montreal, QC, Canada
| | - Rowan D H Barrett
- Québec Centre for Biodiversity Science (QCBS), Montreal, QC, Canada.,Department of Biology, McGill University, Montreal, QC, Canada.,Redpath Museum, McGill University, Montreal, QC, Canada
| | - Beatrix E Beisner
- Groupe de Recherche Interuniversitaire en Limnologie et environnement aquatique (GRIL), Montreal, QC, Canada.,Département des Sciences Biologiques, Université du Québec à Montréal, Montreal, QC, Canada
| | - Graham Bell
- Québec Centre for Biodiversity Science (QCBS), Montreal, QC, Canada.,Department of Biology, McGill University, Montreal, QC, Canada
| | - Viviane Yargeau
- Department of Chemical Engineering, McGill University, Montreal, QC, Canada
| | - Gregor F Fussmann
- Groupe de Recherche Interuniversitaire en Limnologie et environnement aquatique (GRIL), Montreal, QC, Canada.,Québec Centre for Biodiversity Science (QCBS), Montreal, QC, Canada.,Department of Biology, McGill University, Montreal, QC, Canada
| | - Andrew Gonzalez
- Québec Centre for Biodiversity Science (QCBS), Montreal, QC, Canada.,Department of Biology, McGill University, Montreal, QC, Canada
| | - B Jesse Shapiro
- Département des Sciences Biologiques, Université de Montréal, Montreal, QC, Canada.,Groupe de Recherche Interuniversitaire en Limnologie et environnement aquatique (GRIL), Montreal, QC, Canada.,Québec Centre for Biodiversity Science (QCBS), Montreal, QC, Canada.,Department of Microbiology and Immunology, McGill University, Montreal, QC, Canada.,McGill Genome Centre, McGill University, Montreal, QC, Canada
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48
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Levitt EE, Amlung MT, Gonzalez A, Oshri A, MacKillop J. Consistent evidence of indirect effects of impulsive delay discounting and negative urgency between childhood adversity and adult substance use in two samples. Psychopharmacology (Berl) 2021; 238:2011-2020. [PMID: 33782722 DOI: 10.1007/s00213-021-05827-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Accepted: 03/15/2021] [Indexed: 01/13/2023]
Abstract
RATIONALE Exposure to adverse life experiences (ACEs) is robustly associated with problematic alcohol and other drug use. In addition, both ACEs and substance use have been independently associated with impulsivity. OBJECTIVE To examine whether impulsivity is implicated in the link between ACE and adult substance use in two samples. METHODS The primary sample was a cohort of community adults (N = 1431) who completed a one-time in-person assessment. A second sample was crowdsourced using Amazon Mechanical Turk (N = 3021). All participants were assessed for ACEs using the Adverse Childhood Experience Questionnaire and for current alcohol and other drug use. Given its multidimensional nature, impulsivity was assessed using the UPPS-P measure of impulsive personality traits, Go/NoGo (GNG) task (in-person community adult sample only), and delay discounting (Monetary Choice Questionnaire [MCQ] in the community adults and Effective Delay-50 [ED50] in the crowdsourced sample. Structural equation modeling was used to examine the hypothesized indirect effects for the measures of impulsivity between ACEs and substance use. RESULTS In the community adults, significant indirect effects were observed from ACEs to substance use via UPPS-Negative Urgency (β = 0.07, SE = 0.02, 95% CI [0.04, 0.10]), and the MCQ (β = 0.02 SE = .01, 95% CI [0.01, 0.03]). In the crowdsourced sample, significant indirect effects were observed from ACEs to substance use via UPPS-Negative Urgency (β = 0.05, SE = .01, 95% CI [0.04, 0.07]), UPPS-Premeditation (β = 0.04, SE = .01, 95% CI [0.02, 0.05), and the ED50 (β = 0.02, SE = .01; 95% CI [0.01, 0.03]). CONCLUSION These findings provide consistent evidence that decrements in regulation of negative emotions and overvaluation of immediate rewards indirectly link ACE and substance use. These robust cross-sectional findings support the need for elucidating the underlying neural substrates implicated and for longitudinal evaluations.
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Affiliation(s)
- E E Levitt
- Peter Boris Centre for Addictions Research, McMaster University & St. Joseph's Healthcare Hamilton, 100 West 5th Street, Hamilton, ON, L8P 3P2, Canada
- Homewood Research Institute, Guelph, ON, Canada
| | - M T Amlung
- Peter Boris Centre for Addictions Research, McMaster University & St. Joseph's Healthcare Hamilton, 100 West 5th Street, Hamilton, ON, L8P 3P2, Canada
| | - A Gonzalez
- Offord Centre for Child Studies, McMaster University, Hamilton, ON, Canada
| | - A Oshri
- Department of Human Development and Family Science, University of Georgia, Athens, GA, USA
| | - J MacKillop
- Peter Boris Centre for Addictions Research, McMaster University & St. Joseph's Healthcare Hamilton, 100 West 5th Street, Hamilton, ON, L8P 3P2, Canada.
- Homewood Research Institute, Guelph, ON, Canada.
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49
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Ziter C, Bennett EM, Gonzalez A. Correction to: Temperate forest fragments maintain aboveground carbon stocks out to the forest edge despite changes in community composition. Oecologia 2021; 196:935. [PMID: 34095984 DOI: 10.1007/s00442-021-04946-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Carly Ziter
- Department of Biology, McGill University, 1205 Docteur Penfield, Montreal, QC, H3A 1B1, Canada.
| | - Elena M Bennett
- Department of Natural Resource Sciences and McGill School of Environment, McGill University, 21, 111 Lakeshore Road, Sainte‑Anne‑de‑Bellevue, Montreal, QC, H9X 3V9, Canada
| | - Andrew Gonzalez
- Department of Biology, McGill University, 1205 Docteur Penfield, Montreal, QC, H3A 1B1, Canada
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Calamia V, Lourido L, Fernández Puente P, Illiano A, Paz González R, Rocha Loureda B, Collado Rodríguez L, Perez-Pampín E, Ruiz-Romero C, Gonzalez A, Blanco FJ. POS0185 IDENTIFICATION AND VALIDATION OF TWO NOVEL SERUM BIOMARKERS ASSOCIATED WITH THE SEROLOGICAL STATUS OF RHEUMATOID ARTHRITIS PATIENTS. Ann Rheum Dis 2021. [DOI: 10.1136/annrheumdis-2021-eular.2533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Background:Despite the diagnostic value of Rheumatoid Factor (RF) and Anti-Citrullinated Protein Antibodies (ACPA), more serological markers are needed in order to improve early diagnosis and treatment response of the Rheumatoid Arthritis (RA) patients. Increased knowledge about how these two major autoreactivities arise is crucial for understanding how RA develops and what mechanisms drive pathogenesis.Objectives:We aimed to investigate, using a proteomic strategy, novel protein biomarkers associated with RF and/or ACPA that might be useful to stratify seropositive and seronegative RA patients.Methods:A shotgun proteomic analysis was performed on 80 sera from the RA cohort of the Rheumatology Unit of the University Hospital of Santiago de Compostela (CHUS). Sera were classified as seropositive or seronegative according to their RF and ACPA values, and were then analyzed employing the iTRAQ labelling technique (Sciex) followed by LC-MALDI-MS/MS analysis (MALDI-TOF). A Multiple Reaction Monitoring (MRM) method was subsequently developed using the Skyline Software for the simultaneous quantification of 26 peptides belonging to ten putative protein biomarkers. The quantitative targeted analysis was performed using peptides with isotope labelled amino acids as internal standards. Serum levels of orosomucoid 1 (ORM1) and haptoglobin (HPT) were measured using commercially available ELISA Kits in the whole RA cohort (n=260) from the Rheumatology Unit of the University Hospital of A Coruña (HUAC).Results:For the initial screening, eighty sera were grouped according to the ACPA/RF status in 4 pools (20 patients/pool). Using an iTRAQ technology-based quantitative proteomic approach, the abundance of eleven proteins was altered in the sera from ACPApos/RFpos, 13 proteins in ACPAneg/RFpos and 12 proteins in ACPApos/RFneg, compared to ACPAneg/RFneg. Vitamin D binding protein (VTDB) was the unique protein that resulted increased in all the comparisons. For the biomarker verification phase, all the samples from the CHUS cohort were analyzed individually (n=80). Using the MRM technology, 26 peptides belonging to ten putative protein biomarkers associated with double positivity were simultaneously quantified. The statistical analysis showed a significant modulation of 9 peptides (belonging to 4 different proteins) in ACPApos/RFpos, 7 peptides (5 proteins) in ACPAneg/RFpos, and 9 peptides (6 proteins) in ACPApos/RFneg compared to ACPAneg/RFneg (p<0.05). Two acute phase reactants (ORM1 and HPT) displayed the same modulation in both screening and verification phases, thus confirming their association with the double positivity. Finally, in the biomarker validation phase, a total of 260 patients from CHUAC were included (Table 1). RA patients were classified as follows: (1) 112 patients (43.1%) were ACPApos/RFpos; (2) 73 patients (28.1%) were ACPAneg/RFneg; (3) 51 patients (19.6%) were ACPAneg/RFpos; and (4) 24 patients (9.2%) were ACPApos/RFneg. Serum levels of ORM1 and HPT (Figure 1), measured by commercial immunoassays, confirmed their increased values in double seropositive patients (p=0,0053 ORM1; p=0,0026 HPT). Finally, the increased level of ORM1 resulted associated with RF rather than ACPA status (p=0,0008 ACPAneg/RFpos); whereas HPT was associated with ACPA rather than RF status (p=0,0112 ACPApos/RFneg).Table 1.The different phases of RA biomarker development followed in this study.DISCOVERYPHASEVERIFICATIONPHASEVALIDATIONPHASESource centerCHUSCHUSCHUACN° ofsamplesn= 4n= 80n= 260ACPA+RF+Pool 1ACPA+RF+20ACPA+RF+112ACPA-RF-Pool 2ACPA-RF-20ACPA-RF-73ACPA-RF+Pool 3ACPA-RF+20ACPA-RF+51ACPA+RF-Pool 4ACPA+RF-20ACPA+RF-24N° ofbiomarkersORM1, ORM2, HPT, A2GL, AACT, RBP4, PLMN, IC1, VDBP, APOBORM1, HPT, A2GL, AACTORM1, HPTFigure 1.Conclusion:The determination of ORM1 and HPT in sera provides novel information useful for patient stratification, which might improve diagnostic and prognostic approaches and facilitate the development of personalized medicine strategies in RA.Acknowledgements:This work is supported by grants from Fondo de Investigación Sanitaria (RD16/0012/0002, PT17/0019/0014) integrated in the National Plan for Scientific Program, Development and Technological Innovation 2013–2016 and funded by the ISCIII-General Subdirection of Assessment and Promotion of Research-European Regional Development Fund (FEDER) “A way of making Europe”.Disclosure of Interests:None declared
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