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Białek M, Klimasińska A, Spaleniak G, Dziuk B. Titanium and Vanadium Complexes of Tridentate Phenoxy-Imine and Phenoxy-Amine Ligands and Their Application in the Ring-Opening Polymerization of Cyclic Esters. Molecules 2023; 29:87. [PMID: 38202670 PMCID: PMC10779786 DOI: 10.3390/molecules29010087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 12/02/2023] [Accepted: 12/19/2023] [Indexed: 01/12/2024] Open
Abstract
Phenoxy-imine and phenoxy-amine proligands, with the additional OH donor groups 2,4-tBu2-6-(2-CH2(OH)-C6H4N=CH)C6H3OH (L1H2), 6-(2-CH2(OH)-C6H4N=CH)C6H3OH (L2H2), and 2,4-tBu2-6-(2-CH2(OH)-C6H4NH-CH)C6H3OH (L3H2), were synthesized and their titanium (Ti-L1-Ti-L3) and vanadium (V-L1-V-L2) complexes were prepared in reactions with Ti(OiPr)4 and VO(OiPr)3, respectively. All new compounds were characterized with the use of FTIR, 1H, and 13C NMR spectroscopy; X-ray crystallography was also used to study proligands. All the complexes proved to be active catalysts in the ring-opening polymerization (ROP) of ε-caprolactone, rac-lactide, and L-lactide in the melt. The effects of the complex structure (transition metal type, presence of tBu substituents, and type of nitrogen donor group), as well as the polymerization time and temperature, on the monomer conversion and polymer properties were investigated in detail.
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Affiliation(s)
- Marzena Białek
- Institute of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland (G.S.)
| | - Alicja Klimasińska
- Institute of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland (G.S.)
| | - Grzegorz Spaleniak
- Institute of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland (G.S.)
| | - Błażej Dziuk
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50370 Wrocław, Poland;
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2
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Podchorodecka P, Dziuk B, Szostak R, Szostak M, Bisz E. IPr* Oxa - a new class of sterically-hindered, wingtip-flexible N,C-chelating oxazole-donor N-heterocyclic carbene ligands. Dalton Trans 2023; 52:13608-13617. [PMID: 37698540 DOI: 10.1039/d3dt02255b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/13/2023]
Abstract
N-heterocyclic carbenes (NHCs) have emerged as a major direction in ancillary ligand development for stabilization of reactive metal centers in inorganic and organometallic chemistry. In particular, wingtip-flexible NHCs have attracted significant attention due to their unique ability to provide a sterically-demanding environment for transition metals in various oxidation states. Herein, we report a new class of sterically-hindered, wingtip-flexible NHC ligands that feature N,C-chelating oxazole donors. These ligands are readily accessible through a modular arylation of oxazole derivatives. We report their synthesis and complete structural and electronic characterization. The evaluation of steric, electron-donating and π-accepting properties and coordination chemistry to Ag(I), Pd(II) and Rh(I) is described. Preliminary studies of catalytic activity in Ag, Pd and Rh-catalyzed coupling and hydrosilylation reactions are presented. This study establishes the fluxional behavior of a freely-rotatable oxazole unit, wherein the oxazolyl ring adjusts to the steric and electronic environment of the metal center. Considering the tremendous impact of sterically-hindered NHCs and their potential to stabilize reactive metals by N-chelation, we expect that this class of NHC ligands will be of broad interest in inorganic and organometallic chemistry.
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Affiliation(s)
- Pamela Podchorodecka
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland.
| | - Błażej Dziuk
- Department of Chemistry, University of Science and Technology, Norwida 4/6, Wroclaw 50-373, Poland
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, NJ 07102, USA.
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland.
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3
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Banaś K, Lenartowicz P, Staś M, Dziuk B, Siodłak D. Insight into the Structure of Victorin, the Host-Selective Toxin from the Oat Pathogen Cochliobolus victoriae. Studies of the Unique Dehydroamino Acid β-Chlorodehydroalanine. J Agric Food Chem 2023. [PMID: 37486973 PMCID: PMC10401702 DOI: 10.1021/acs.jafc.3c01387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/26/2023]
Abstract
Victorins, a family of peptide toxins, produced by the fungal pathogen Cochliobolus victoriae and responsible for disease of some oat varieties, contain a β-chlorodehydroalanine residue, ΔAla(βCl). To determine the conformational properties of this unique dehydroamino acid, a series of model compounds was studied using X-ray, NMR, and FT-IR methods, supported by theoretical calculations. The ΔAla(βCl) geometrical isomers differ in conformational profile. The isomer Z prefers the helical conformation α (φ, ψ = -61°, -24°), PPII type conformation β (φ, ψ = -47°, 136°), and semiextended conformation β2 (φ, ψ = -116°, 9°) in weakly and more polar solutions. The isomer E prefers mainly the extended conformation C5 (φ, ψ = -177°, 160°), but with an increase of the environment polarity also conformations β (φ, ψ = -44°, 132°) and α (φ, ψ = -53°, -39°). In the most stable conformations the N-H···Cl hydrogen bond (5γ) occurs, created between the chlorine atom of the side chain and the N-H donor of the flanking amide group. The method of synthesis of the β-chlorodehydroalanine residue is proposed, by chlorination of dehydroalanine and then the photoisomerization from the isomer Z to E. The presented results indicate that the assignment of the geometrical isomer of the ΔAla(βCl) residue in naturally occurring victorins still remains an open question, despite being crucial for biological activity.
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Affiliation(s)
- Karolina Banaś
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Paweł Lenartowicz
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Monika Staś
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Błażej Dziuk
- Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland
- Faculty of Chemistry, University of Wroclaw, Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Dawid Siodłak
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
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Rahman MM, Meng G, Bisz E, Dziuk B, Lalancette R, Szostak R, Szostak M. I tOct (I tOctyl) - pushing the limits of I tBu: highly hindered electron-rich N-aliphatic N-heterocyclic carbenes. Chem Sci 2023; 14:5141-5147. [PMID: 37206400 PMCID: PMC10189875 DOI: 10.1039/d3sc01006f] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 04/15/2023] [Indexed: 05/21/2023] Open
Abstract
ItBu (ItBu = 1,3-di-tert-butylimidazol-2-ylidene) represents the most important and most versatile N-alkyl N-heterocyclic carbene available in organic synthesis and catalysis. Herein, we report the synthesis, structural characterization and catalytic activity of ItOct (ItOctyl), C2-symmetric, higher homologues of ItBu. The new ligand class, including saturated imidazolin-2-ylidene analogues has been commercialized in collaboration with MilliporeSigma: ItOct, 929 298; SItOct, 929 492 to enable broad access of the academic and industrial researchers within the field of organic and inorganic synthesis. We demonstrate that replacement of the t-Bu side chain with t-Oct results in the highest steric volume of N-alkyl N-heterocyclic carbenes reported to date, while retaining the electronic properties inherent to N-aliphatic ligands, such as extremely strong σ-donation crucial to the reactivity of N-alkyl N-heterocyclic carbenes. An efficient large-scale synthesis of imidazolium ItOct and imidazolinium SItOct carbene precursors is presented. Coordination chemistry to Au(i), Cu(i), Ag(i) and Pd(ii) as well as beneficial effects on catalysis using Au(i), Cu(i), Ag(i) and Pd(ii) complexes are described. Considering the tremendous importance of ItBu in catalysis, synthesis and metal stabilization, we anticipate that the new class of ItOct ligands will find wide application in pushing the boundaries of new and existing approaches in organic and inorganic synthesis.
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Affiliation(s)
- Md Mahbubur Rahman
- Department of Chemistry, Rutgers University 73 Warren Street Newark NJ 07102 USA
| | - Guangrong Meng
- Department of Chemistry, Rutgers University 73 Warren Street Newark NJ 07102 USA
| | - Elwira Bisz
- Department of Chemistry, Opole University 48 Oleska Street Opole 45-052 Poland
| | - Błażej Dziuk
- Department of Chemistry, Wroclaw University of Science and Technology Norwida 4/6 14 Wroclaw 50-373 Poland
| | - Roger Lalancette
- Department of Chemistry, Rutgers University 73 Warren Street Newark NJ 07102 USA
| | - Roman Szostak
- Department of Chemistry, Wroclaw University F. Joliot-Curie 14 Wroclaw 50-383 Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University 73 Warren Street Newark NJ 07102 USA
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Chmielewska E, Miodowska N, Dziuk B, Psurski M, Kafarski P. One-Pot Phosphonylation of Heteroaromatic Lithium Reagents: The Scope and Limitations of Its Use for the Synthesis of Heteroaromatic Phosphonates. Molecules 2023; 28:molecules28073135. [PMID: 37049896 PMCID: PMC10095984 DOI: 10.3390/molecules28073135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 03/24/2023] [Accepted: 03/29/2023] [Indexed: 04/03/2023] Open
Abstract
A one-pot lithiation–phosphonylation procedure was elaborated as a method to prepare heteroaromatic phosphonic acids. It relied on the direct lithiation of heteroaromatics followed by phosphonylation with diethyl chlorophosphite and then oxidation with hydrogen peroxide. This protocol provided the desired phosphonates with satisfactory yields. This procedure also had some limitations in its dependence on the accessibility and stability of the lithiated heterocyclic compounds. The same procedure could be applied to phosphonylation of aromatic compounds, which do not undergo direct lithiation and thus require the use of their bromides as substrates. The obtained compounds showed weak antiproliferative activity when tested on three cancer cell lines.
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Affiliation(s)
- Ewa Chmielewska
- Department of Bioorganic Chemistry, Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
- Correspondence: ; Tel.: +48-71-320–2977
| | - Natalia Miodowska
- Department of Bioorganic Chemistry, Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Błażej Dziuk
- Department of Inorganic and Structural Chemistry, Faculty of Chemistry, University of Opole, ul. Oleska 48, 45-052 Opole, Poland
| | - Mateusz Psurski
- Laboratory of Experimental Anticancer Therapy, Department of Experimental Oncology, Ludwik Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, Rudolfa Weigla 12, 53-114 Wrocław, Poland
| | - Paweł Kafarski
- Department of Chemistry, Faculty of Agriculture and Forestry, University of Warmia and Mazury, Plac Łódzki 4, 10-721 Olsztyn, Poland
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6
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Gao P, Xu J, Zhou T, Liu Y, Bisz E, Dziuk B, Lalancette R, Szostak R, Zhang D, Szostak M. L-Shaped Heterobidentate Imidazo[1,5-a]pyridin-3-ylidene (N,C)-Ligands for Oxidant-Free Au I /Au III Catalysis. Angew Chem Int Ed Engl 2023; 62:e202218427. [PMID: 36696514 PMCID: PMC9992098 DOI: 10.1002/anie.202218427] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 01/18/2023] [Accepted: 01/25/2023] [Indexed: 01/26/2023]
Abstract
In the last decade, major advances have been made in homogeneous gold catalysis. However, AuI /AuIII catalytic cycle remains much less explored due to the reluctance of AuI to undergo oxidative addition and the stability of the AuIII intermediate. Herein, we report activation of aryl halides at gold(I) enabled by NHC (NHC=N-heterocyclic carbene) ligands through the development of a new class of L-shaped heterobidentate ImPy (ImPy=imidazo[1,5-a]pyridin-3-ylidene) N,C ligands that feature hemilabile character of the amino group in combination with strong σ-donation of the carbene center in a rigid conformation, imposed by the ligand architecture. Detailed characterization and control studies reveal key ligand features for AuI /AuIII redox cycle, wherein the hemilabile nitrogen is placed at the coordinating position of a rigid framework. Given the tremendous significance of homogeneous gold catalysis, we anticipate that this ligand platform will find widespread application.
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Affiliation(s)
- Pengcheng Gao
- Department of Chemistry, Rutgers University, 73 Warren Street, 07102, Newark, NJ, USA
| | - Jihong Xu
- Key Lab of Colloid and Interface Chemistry, Ministry of Education, Institute of Theoretical Chemistry, School of Chemistry and Chemical Engineering, Shandong University, 250100, Jinan, China
| | - Tongliang Zhou
- Department of Chemistry, Rutgers University, 73 Warren Street, 07102, Newark, NJ, USA
| | - Yanhong Liu
- Key Lab of Colloid and Interface Chemistry, Ministry of Education, Institute of Theoretical Chemistry, School of Chemistry and Chemical Engineering, Shandong University, 250100, Jinan, China
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, 45-052, Opole, Poland
| | - Błażej Dziuk
- Department of Chemistry, University of Science and Technology, Norwida 4/6, 50-373, Wroclaw, Poland
| | - Roger Lalancette
- Department of Chemistry, Rutgers University, 73 Warren Street, 07102, Newark, NJ, USA
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, 50-383, Wroclaw, Poland
| | - Dongju Zhang
- Key Lab of Colloid and Interface Chemistry, Ministry of Education, Institute of Theoretical Chemistry, School of Chemistry and Chemical Engineering, Shandong University, 250100, Jinan, China
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, 07102, Newark, NJ, USA
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7
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Gao P, Xu J, Zhou T, Liu Y, Bisz E, Dziuk B, Lalancette R, Szostak R, Zhang D, Szostak M. Activation of Aryl Halides at Gold(I) by N‐Heterocyclic Carbenes: L‐Shaped Heterobidentate ImPy (Imidazo[1,5‐a]pyridin‐ylidene) N,C Ligands for Oxidant‐Free Au(I)/Au(III) Catalysis. Angew Chem Int Ed Engl 2023. [DOI: 10.1002/ange.202218427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Pengcheng Gao
- Rutgers University New Brunswick Chemistry UNITED STATES
| | - Jihong Xu
- Shandong University School of Chemistry CHINA
| | - Tongliang Zhou
- Rutgers University New Brunswick Chemistry UNITED STATES
| | - Yanhong Liu
- Shandong University School of Chemistry CHINA
| | - Elwira Bisz
- Opole University: Uniwersytet Opolski Chemistry POLAND
| | - Błażej Dziuk
- Wroclaw University of Science and Technology: Politechnika Wroclawska Chemistry POLAND
| | | | - Roman Szostak
- University of Wroclaw: Uniwersytet Wroclawski Chemistry POLAND
| | | | - Michal Szostak
- Rutgers University Department of Chemistry 73 Warren St. 07102 Newark UNITED STATES
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Chu W, Zhou T, Bisz E, Dziuk B, Lalancette R, Szostak R, Szostak M. CAAC-IPr*: easily accessible, highly sterically-hindered cyclic (alkyl)(amino)carbenes. Chem Commun (Camb) 2022; 58:13467-13470. [PMID: 36382995 PMCID: PMC9737351 DOI: 10.1039/d2cc05668b] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
IPr* (IPr* = 1,3-bis(2,6-bis(diphenylmethyl)-4-methylphenyl)imidazol-2-ylidene) has emerged as a powerful highly hindered and sterically-flexible ligand platform for transition-metal catalysis. CAACs (CAAC = cyclic (al-kyl)(amino)carbenes) have gained major attention as strongly electron-rich carbon analogues of NHCs (NHC = N-heterocyclic carbene) with broad applications in both industry and academia. Herein, we report a merger of CAAC ligands with highly-hindered IPr*. The efficient synthesis, electronic characterization and application in model Cu-catalyzed hydroboration of alkynes is described. The ligands are strongly electron-rich, bulky and flexible around the N-Ar wingtip. The availability of various IPr* and CAAC templates offers a significant potential to expand the existing arsenal of NHC ligands to electron-rich bulky architectures with critical applications in metal stabilization and catalysis.
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Affiliation(s)
- Wenchao Chu
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, USA.
| | - Tongliang Zhou
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, USA.
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Faculty of Chemistry, Wroclaw University of Science and Technology, 50-370 Wroclaw, Poland
| | - Roger Lalancette
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, USA.
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, USA.
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9
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Zhou T, Gao P, Bisz E, Dziuk B, Lalancette R, Szostak R, Szostak M. Well-Defined, Air- and Moisture-Stable Palladium-Imidazo[1,5- a]pyridin-3-ylidene Complexes: A Versatile Catalyst Platform for Cross-Coupling Reactions by L-Shaped NHC Ligands. Catal Sci Technol 2022; 12:6581-6589. [PMID: 38045636 PMCID: PMC10691866 DOI: 10.1039/d2cy01136k] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2023]
Abstract
We describe the development of [(NHC)Pd(cinnamyl)Cl] complexes of ImPy (ImPy = imidazo[1,5-a]pyridin-3-ylidene) as a versatile class of precatalysts for cross-coupling reactions. These precatalysts feature fast activation to monoligated Pd(0) with 1:1 Pd to ligand ratio in a rigid imidazo[1,5-a]pyridin-3-ylidene template. Steric matching of the C5-substituent and N2-wingtip in the catalytic pocket of the catalyst framework led to the discovery of ImPyMesDipp as a highly reactive imidazo[1,5-a]pyridin-3-ylidene ligand for Pd-catalyzed cross-coupling of nitroarenes by challenging C-NO2 activation. Kinetic studies demonstrate fast activation and high reactivity of this class of well-defined ImPy-Pd catalysts. Structural studies provide full characteristics of this new class of imidazo[1,5-a]pyridin-3-ylidene ligands. Computational studies establish electronic properties of sterically-restricted imidazo[1,5-a]pyridin-3-ylidene ligands. Finally, a scalable synthesis of C5-substituted imidazo[1,5-a]pyridin-3-ylidene ligands through Ni-catalyzed Kumada cross-coupling is disclosed. The method obviates chromatographic purification at any of the steps, resulting in a facile and modular access to ImPy ligands. We anticipate that well-defined [Pd-ImPy] complexes will find broad utility in organic synthesis and catalysis for activation of unreactive bonds.
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Affiliation(s)
- Tongliang Zhou
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, NJ 07102, USA
| | - Pengcheng Gao
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, NJ 07102, USA
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Department of Chemistry, University of Science and Technology, Norwida 4/6, Wroclaw 50-373, Poland
| | - Roger Lalancette
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, NJ 07102, USA
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, NJ 07102, USA
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Rahman MM, Zhang J, Zhao Q, Feliciano J, Bisz E, Dziuk B, Lalancette R, Szostak R, Szostak M. Pd-PEPPSI N-Heterocyclic Carbene Complexes from Caffeine: Application in Suzuki, Heck, and Sonogashira Reactions. Organometallics 2022; 41:2281-2290. [PMID: 38031591 PMCID: PMC10686539 DOI: 10.1021/acs.organomet.2c00262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The first synthesis of Pd-PEPPSI N-heterocyclic carbene complexes derived from the abundant and renewable natural product caffeine is reported. The catalysts bearing 3-chloro-pyridine, pyridine and N-methylimidazole ancillary ligands were readily prepared from the corresponding N9-Me caffeine imidazolium salt by direct deprotonation and coordination to PdX2 in the presence of N-heterocycles or by ligand displacement of PdX2(Het)2. The model Pd-PEPPSI-caffeine complex has been characterized by x-ray crystallography. The complexes were successfully employed in the Suzuki cross-coupling of aryl bromides, Suzuki cross-coupling of amides, Heck cross-coupling and Sonogashira cross-coupling. Computational studies were employed to determine frontier molecular orbitals and bond order analysis of caffeine derived Pd-PEPPSI complexes. This class of catalysts offers an entry to utilize benign and sustainable biomass-derived Xanthine NHC ligands in the popular Pd-PEPPSI systems in organic synthesis and catalysis.
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Affiliation(s)
- Md Mahbubur Rahman
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Jin Zhang
- College of Chemistry and Chemical Engineering, Key Laboratory of Chemical Additives for China National Light Industry, Shaanxi University of Science and Technology, Xi'an 710021, China
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Qun Zhao
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Jessica Feliciano
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Department of Chemistry, University of Science and Technology, Norwida 4/6, Wroclaw 50-373, Poland
| | - Roger Lalancette
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
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11
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Zhang J, Rahman MM, Zhao Q, Feliciano J, Bisz E, Dziuk B, Lalancette R, Szostak R, Szostak M. N-Heterocyclic Carbene Complexes of Nickel(II) from Caffeine and Theophylline: Sustainable Alternative to Imidazol-2-ylidenes. Organometallics 2022; 41:1806-1815. [PMID: 36213557 PMCID: PMC9534456 DOI: 10.1021/acs.organomet.2c00019] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Xanthines, such as caffeine and theophylline, are abundant natural products that are often present in foods. Leveraging renewable and benign resources for ligand design in organometallic chemistry and catalysis is one of the major missions of green and sustainable chemistry. In this Special Issue on Sustainable Organometallic Chemistry, we report the first nickel-N-heterocyclic carbene complexes derived from Xanthines. Well-defined, air- and moisture-stable, half-sandwich, cyclopentadienyl [CpNi(NHC)I] nickel-NHC complexes are prepared from the natural products caffeine and theophylline. The model complex has been characterized by x-ray crystallography. The evaluation of steric, electron-donating and π-accepting properties is presented. High activity in the model Suzuki-Miyaura cross-coupling is demonstrated. The data show that nickel-N-heterocyclic carbenes derived from both Earth abundant 3d transition metal and renewable natural products represent a sustainable alternative to the classical imidazol-2-ylidenes.
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Affiliation(s)
- Jin Zhang
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
- College of Chemistry and Chemical Engineering, Key Laboratory of Chemical Additives for China National Light Industry, Shaanxi University of Science and Technology, Xi’an 710021, P. R. China
| | - Md. Mahbubur Rahman
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Qun Zhao
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Jessica Feliciano
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Department of Chemistry, University of Science and Technology, Norwida 4/6, Wroclaw 50-373, Poland
| | - Roger Lalancette
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
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12
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Wang CA, Rahman MM, Bisz E, Dziuk B, Szostak R, Szostak M. Palladium-NHC (NHC = N-heterocyclic Carbene)-Catalyzed Suzuki–Miyaura Cross-Coupling of Alkyl Amides. ACS Catal 2022. [DOI: 10.1021/acscatal.1c05738] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Chang-An Wang
- College of Chemistry and Chemical Engineering, Taishan University, Tai’an, Shandong 271000, People’s Republic of China
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Md. Mahbubur Rahman
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Department of Chemistry, University of Science and Technology, Norwida 4/6 14, Wroclaw 50-373, Poland
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
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13
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Ośmiałowski B, Dziuk B, Ejsmont K, Chęcińska L, Dobrzańska L. Effect of conjugated system extension on structural features and electron-density distribution in charge-transfer difluoroborates. Acta Crystallogr C 2021; 77:807-813. [PMID: 34864724 DOI: 10.1107/s2053229621012249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 11/18/2021] [Indexed: 11/10/2022] Open
Abstract
A comparative structural study of two related donor-acceptor pyridine-based BF2 complexes, namely, 3-(dimethylamino)-1,1-difluoro-1H-pyrido[1,2-c][1,3,5,2]oxadiazaborinin-9-ium-1-uide, C8H10BF2N3O (1), and 3-{(1E,3E)-4-[4-(dimethylamino)phenyl]buta-1,3-dien-1-yl}-1,1-difluoro-1H-pyrido[1,2-c][1,3,5,2]oxadiazaborinin-9-ium-1-uide, C18H18BF2N3O (2), containing a dimethylamino group and either the shortest (in 1) or the longest (in 2) charge-transfer path known until now in this family of compounds, is presented. Single-crystal X-ray diffraction analysis supported by computational investigations shed more light on these systems, indicating, among other aspects, the predominance of C-H...F contacts in 1, the formation of antiparallel dimers held together by π-π interactions in both compounds, and the involvement of fused BF2-bearing rings in the charge-transfer process.
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Affiliation(s)
- Borys Ośmiałowski
- Faculty of Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7, Toruń 87-100, Poland
| | - Błażej Dziuk
- Faculty of Chemistry, Wrocław University of Science and Technology, Norwida 4/6, Wrocław 50-373, Poland
| | - Krzysztof Ejsmont
- Faculty of Chemistry, University of Opole, Oleska 48, Opole 45-052, Poland
| | - Lilianna Chęcińska
- Faculty of Chemistry, University of Łódź, Pomorska 163/165, Łódź 90-236, Poland
| | - Liliana Dobrzańska
- Faculty of Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7, Toruń 87-100, Poland
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14
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Rahman MM, Pyle DJ, Bisz E, Dziuk B, Ejsmont K, Lalancette R, Wang Q, Chen H, Szostak R, Szostak M. Evaluation of Cyclic Amides as Activating Groups in N-C Bond Cross-Coupling: Discovery of N-Acyl-δ-valerolactams as Effective Twisted Amide Precursors for Cross-Coupling Reactions. J Org Chem 2021; 86:10455-10466. [PMID: 34275281 DOI: 10.1021/acs.joc.1c01110] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The development of efficient methods for facilitating N-C(O) bond activation in amides is an important objective in organic synthesis that permits the manipulation of the traditionally unreactive amide bonds. Herein, we report a comparative evaluation of a series of cyclic amides as activating groups in amide N-C(O) bond cross-coupling. Evaluation of N-acyl-imides, N-acyl-lactams, and N-acyl-oxazolidinones bearing five- and six-membered rings using Pd(II)-NHC and Pd-phosphine systems reveals the relative reactivity order of N-activating groups in Suzuki-Miyaura cross-coupling. The reactivity of activated phenolic esters and thioesters is evaluated for comparison in O-C(O) and S-C(O) cross-coupling under the same reaction conditions. Most notably, the study reveals N-acyl-δ-valerolactams as a highly effective class of mono-N-acyl-activated amide precursors in cross-coupling. The X-ray structure of the model N-acyl-δ-valerolactam is characterized by an additive Winkler-Dunitz distortion parameter Σ(τ+χN) of 54.0°, placing this amide in a medium distortion range of twisted amides. Computational studies provide insight into the structural and energetic parameters of the amide bond, including amidic resonance, N/O-protonation aptitude, and the rotational barrier around the N-C(O) axis. This class of N-acyl-lactams will be a valuable addition to the growing portfolio of amide electrophiles for cross-coupling reactions by acyl-metal intermediates.
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Affiliation(s)
- Md Mahbubur Rahman
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Daniel J Pyle
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland.,Department of Chemistry, Wroclaw University of Science and Technology, Norwida 4/6 14, Wroclaw 50-373, Poland
| | - Krzysztof Ejsmont
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Roger Lalancette
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Qi Wang
- Department of Chemistry & Environmental Science, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
| | - Hao Chen
- Department of Chemistry & Environmental Science, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
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15
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Białek M, Fryga J, Spaleniak G, Dziuk B. Ring opening polymerization of ε-caprolactone initiated by titanium and vanadium complexes of ONO-type schiff base ligand. J Polym Res 2021. [DOI: 10.1007/s10965-021-02419-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
AbstractA phenoxy-imine proligand with the additional OH donor group, 4,6-tBu2-2-(2-CH2(OH)-C6H4N = CH)C6H3OH (LH2), was synthesized and used to prepare group 4 and 5 complexes by reacting with Ti(OiPr)4 (LTi) and VO(OiPr)3 (LV). All new compounds were characterized by the FTIR, 1H and 13C NMR spectroscopy and LTi by the single-crystal X-ray diffraction analysis. The complexes were used as catalysts in the ring opening polymerization of ε-caprolactone. The influence of monomer/transition metal molar ratio, reaction time, polymerization temperature as well as complex type was investigated in detail. The complexes showed high (LTi) and moderate (LV) activity in ε-caprolactone polymerization and the resultant polycaprolactones exhibited Mn and Mw/Mn values ranging from 4.0 · 103 to 18.7 · 103 g/mol and from 1.4 to 2.5, respectively.
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16
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Dziuk B, Ejsmont K, Zarychta B. Energetic study of bifurcated hydrogen bonds in secondary structures of salts composed with dicarboxylic acids and ethylamine. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.127945] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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17
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Sołtysiak P, Dziuk B, Zarychta B, Ejsmont K, Spaleniak G. The substituent effect of π-electron delocalization in N-methylamino-nitropyridine derivatives: crystal structure and DFT calculations. Struct Chem 2020. [DOI: 10.1007/s11224-020-01514-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
AbstractThe crystal and molecular structures of 3-(N-methylamino)-2-nitropyridine, 5-(N-methylamino)-2-nitropyridine and 2-(N-methylamino)-5-nitropyridine have been characterized by X-ray diffraction. To perform conformational analysis, the geometries of the compounds as well as their conformers and rotamers were optimized at the B3LYP/6-311++G(3df,3pd) level. The resulting data were used to analyze the π-electron delocalization effect in relation to the methylamino group rotation in ortho-, meta- and para-substitution positions. Quantitative aromaticity indices were calculated based on which we estimated the electronic structures of the analyzed compounds. The substituent effect of the methylamino and nitro groups was also characterized by related descriptors, i.e., charge of the Substituent Active Region (cSAR(X)) calculated based on the Hirshfeld charges and Substituent Effect Stabilization Energy (SESE). It has been shown that all the used parameters were found to be mutually interrelated with much better correlations for the meta- and para- than the ortho-derivatives. The rotation of the methylamino group relative to the aromatic fragment has an effect on the change in delocalization of the π-electrons of the pyridine ring. Relations between cSAR(NHCH3) and cSAR(NO2) show almost identical sensitivity of the substituent effect in meta- and para-substituted derivatives, whereas in ortho-substituted analogs, different kinds of intramolecular interactions have been revealed. Furthermore, the analyzed dependency of SESE values on the torsional angle of the methylamino group indicates that an increase in the electron-attracting power of the substituent leads to a decrease in energy.
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18
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Białoń M, Dziuk B, Olijnyk V. Copper‐Promoted Formation of Vinylsiloxanes. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.202000134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Marietta Białoń
- Faculty of Chemistry University of Opole Oleska 48 45‐052 Opole Poland
| | - Błażej Dziuk
- Faculty of Chemistry University of Opole Oleska 48 45‐052 Opole Poland
- Faculty of Chemistry Wrocław University of Science and Technology Wybrzeże Wyspiańskiego 27 50‐370 Wrocław Poland
| | - Volodymyr Olijnyk
- Faculty of Chemistry University of Opole Oleska 48 45‐052 Opole Poland
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19
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Rahman MM, Liu C, Bisz E, Dziuk B, Lalancette R, Wang Q, Chen H, Szostak R, Szostak M. N-Acyl-glutarimides: Effect of Glutarimide Ring on the Structures of Fully Perpendicular Twisted Amides and N–C Bond Cross-Coupling. J Org Chem 2020; 85:5475-5485. [DOI: 10.1021/acs.joc.0c00227] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Md. Mahbubur Rahman
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Chengwei Liu
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-373 Wrocław, Poland
| | - Roger Lalancette
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Qi Wang
- Department of Chemistry & Environmental Science, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
| | - Hao Chen
- Department of Chemistry & Environmental Science, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
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20
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Rok M, Zarychta B, Moskwa M, Dziuk B, Medycki W, Bator G. Structural phase transitions coupled with prominent dielectric anomalies and dielectric relaxation in [(CH 3) 3NH] 2[KCo(CN) 6] and mixed [(CH 3) 3NH] 2[KFe xCo 1-x(CN) 6] double perovskite hybrids. Dalton Trans 2020; 49:1830-1838. [PMID: 31965127 DOI: 10.1039/c9dt04703d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The crystals of pure [(CH3)3NH]2[KFe(CN)6] (TrMAFe) and [(CH3)3NH]2[KCo(CN)6] (TrMACo) as well as their mixed crystals (TrMAFexCo1-x), with different ratios of x = 0, 0.12, 0.18, 0.49, 0.56, 0.73, 0.81, 1.0, have been grown from aqueous solutions. The structure of TrMACo has been determined at 360 K to be cubic (Fm3[combining macron]m). In phase II (100 K), the TrMACo crystal is monoclinic (C2/c). The thermal stability of the pure and mixed crystals has been determined by using both DTA and TGA. Based on the DSC results, we have found a single phase transition (PT) for both pure and mixed crystals. The Fe(iii) concentration was estimated by using the SEM technique. We have found a linear relationship between the PT temperature (Tc) and the molar concentration of Fe(iii). Based on the obtained results, a phase diagram has been constructed. The mechanism of the structural PT has been discussed based on the results of dielectric relaxation and 1H NMR and X-ray spectroscopy measurements. The results confirmed that the PT mechanism of both pure and mixed crystals is related to the change in the dynamic state of the TrMA+ cations. The dielectric activation energy changes linearly with the mole fraction ranking from 35 to 38 kJ mol-1, for the mixed crystals.
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Affiliation(s)
- Magdalena Rok
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot - Curie, 50-383 Wroclaw, Poland. and Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research, Joliot-Curie 6, 141-980 Dubna, Russia
| | - Bartosz Zarychta
- Faculty of Chemistry, University of Opole, Opole PL-45052, Poland
| | - Marcin Moskwa
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot - Curie, 50-383 Wroclaw, Poland.
| | - Błażej Dziuk
- Faculty of Chemistry, University of Opole, Opole PL-45052, Poland and Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Wojciech Medycki
- Institute of Molecular Physics, Polish Academy of Sciences, Smoluchowskiego 17, 60-179 Poznań, Poland
| | - Grażyna Bator
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot - Curie, 50-383 Wroclaw, Poland.
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21
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Lenartowicz P, Witkowska D, Żyszka-Haberecht B, Dziuk B, Ejsmont K, Świątek-Kozłowska J, Kafarski P. A novel approach for obtaining α,β-diaminophosphonates bearing structurally diverse side chains and their interactions with transition metal ions studied by ITC. RSC Adv 2020; 10:24045-24056. [PMID: 35517327 PMCID: PMC9055133 DOI: 10.1039/d0ra03764h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Accepted: 06/17/2020] [Indexed: 11/21/2022] Open
Abstract
Aminophosphonates are an important group of building blocks in medicinal and pharmaceutical chemistry. Novel representatives of this class of compounds containing nontypical side chains are still needed. The aza-Michael-type addition of amines to phosphonodehydroalanine derivatives provides a simple and effective approach for synthesizing N′-substituted α,β-diaminoethylphosphonates and thus affords general access to aminophosphonates bearing structurally diverse side chains. Thermodynamic analysis of the chosen aminophosphonates at physiological pH proves that they serve as potent chelators for copper(ii) ions and moderate chelators for nickel(ii) ions. A convenient and general reaction is presented for the preparation of diaminophosphonates further evaluated as chelators of metal ions.![]()
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Affiliation(s)
| | - Danuta Witkowska
- Public Higher Medical Professional School in Opole
- 45-060 Opole
- Poland
| | | | - Błażej Dziuk
- Faculty of Chemistry
- University of Opole
- 45-052 Opole
- Poland
- Faculty of Chemistry
| | | | | | - Paweł Kafarski
- Department of Bioorganic Chemistry
- Faculty of Chemistry
- Wrocław University of Science and Technology
- 50-370 Wrocław
- Poland
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22
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Kusakiewicz-Dawid A, Porada M, Dziuk B, Siodłak D. Annular Tautomerism of 3(5)-Disubstituted-1 H-pyrazoles with Ester and Amide Groups. Molecules 2019; 24:E2632. [PMID: 31330976 PMCID: PMC6680591 DOI: 10.3390/molecules24142632] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Revised: 07/16/2019] [Accepted: 07/17/2019] [Indexed: 11/16/2022] Open
Abstract
A series of disubstituted 1H-pyrazoles with methyl (1), amino (2), and nitro (3) groups, as well as ester (a) or amide (b) groups in positions 3 and 5 was synthesized, and annular tautomerism was investigated using X-ray, theoretical calculations, NMR, and FT-IR methods. The X-ray experiment in the crystal state showed for the compounds with methyl (1a, 1b) and amino (2b) groups the tautomer with ester or amide groups at position 3 (tautomer 3), but for those with a nitro group (3b, 4), tautomer 5. Similar results were obtained in solution by NMR NOE experiments in CDCl3, DMSO-d6, and CD3OD solvents. However, tautomer equilibrium was observed for 2b in DMSO. The FT-IR spectra in chloroform and acetonitrile showed equilibria, which can be ascribed to conformational changes of the cis/trans arrangement of the ester/amide group and pyrazole ring. Theoretical analysis using the M06-2X/6-311++G(d,p) method (in vacuo, chloroform, acetonitrile, and water) and measurement of aromaticity (NICS) showed dependence on internal hydrogen bonds, the influence of the environment, and the effect of the substituent. These factors, pyrazole aromaticity and intra- and inter-molecular interactions, seem to have a considerable influence on the choice of tautomer.
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Affiliation(s)
| | - Monika Porada
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Błażej Dziuk
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Dawid Siodłak
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland.
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23
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Argüello-Velasco R, Dziuk B, Zarychta B, Ordóñez M, Kafarski P. Reactions of Piperazin-2-one, Morpholin-3-one, and Thiomorpholin-3-one with Triethyl Phosphite Prompted by Phosphoryl Chloride: Scope and Limitations. ACS Omega 2019; 4:9056-9064. [PMID: 31459993 PMCID: PMC6648091 DOI: 10.1021/acsomega.9b01137] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/22/2019] [Accepted: 05/13/2019] [Indexed: 06/10/2023]
Abstract
The reaction of the title lactams with triethyl phosphite prompted by phosphoryl chloride provided six-membered ring heterocyclic phosphonates or bisphosphonates. These novel scaffolds might be of interest as building blocks in medicinal chemistry. The course of the reaction was dependent on the structure of the used substrate. Thus, morpholin-3-one and thiomorpholin-3-one readily provided the corresponding 1,1-bisphosphonates (compounds 1, 2, 7, 14 and 16), whereas the protection of their nitrogen atom resulted in the formation of dehydrophosphonates (compounds 5, 6, and 8). Piperazin-2-one reacted differently yielding mixture of cis- and trans- piperazine-2,3-diyl-bisphosphonates (compounds 10 and 11). Since cytosine could be considered as an analogue of piperin-2-one, its ditosyl derivative 18 was used as a substrate affording compound 19 being a product of phosphite addition to double bond. In dependence of their structures, hydrolysis of the obtained diethyl phosphonates resulted either in corresponding cyclic phosphonic acids or in the degradation of carbon-to-phosphorus bond.
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Affiliation(s)
| | - Błażej Dziuk
- Department
of Crystallography, Faculty of Chemistry, University of Opole, 45-040 Opole, Poland
| | - Bartosz Zarychta
- Department
of Crystallography, Faculty of Chemistry, University of Opole, 45-040 Opole, Poland
| | - Mario Ordóñez
- Centro
de Investigaciones Químicas—IICBA, Universidad Autónoma del Estado de Morelos, 62209 Cuernavaca, Morelos, Mexico
| | - Paweł Kafarski
- Department
of Bioorganic Chemistry, Wrocław University
of Science and Technology, 50-370 Wrocław, Poland
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24
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Rok M, Bator G, Zarychta B, Dziuk B, Repeć J, Medycki W, Zamponi M, Usevičius G, Šimėnas M, Banys J. Isostructural phase transition, quasielastic neutron scattering and magnetic resonance studies of a bistable dielectric ion-pair crystal [(CH 3) 2NH 2] 2KCr(CN) 6. Dalton Trans 2019; 48:4190-4202. [PMID: 30821302 DOI: 10.1039/c8dt05082a] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
We have synthesised and characterised a novel organic-inorganic hybrid crystal, [(CH3)2NH2]2KCr(CN)6. The thermal DSC, TMA, DTG and DTA analyses indicate two solid-to-solid structural phase transitions (PTs). According to the X-ray diffraction experiments, the first PT at 220 K is isostructural, since it does not involve a change of the space group. This transition occurs between the states, where the (CH3)2NH2+ cations are orientationally disordered and ordered (frozen). The other reversible PT at 481 K leads to a melt-like phase similar to the one observed in plastic crystals or polar liquids. Dielectric spectroscopy has been used to characterise the switching properties of the dipole moments in the vicinity of the PTs. Continuous-wave electron paramagnetic resonance spectroscopy was employed to investigate the effect of ordering on the local environment of the Cr3+ ions. We have also applied the quasielastic neutron scattering (QENS) technique as well as 1H NMR spectroscopy to measure the dynamics of the (CH3)2NH2+ cations residing in the inorganic framework.
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Affiliation(s)
- M Rok
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot - Curie, 50-383 Wroclaw, Poland.
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25
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Ptak M, Dziuk B, Stefańska D, Hermanowicz K. The structural, phonon and optical properties of [CH3NH3]M0.5CrxAl0.5−x(HCOO)3 (M = Na, K; x = 0, 0.025, 0.5) metal–organic framework perovskites for luminescence thermometry. Phys Chem Chem Phys 2019; 21:7965-7972. [DOI: 10.1039/c9cp01043b] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report the structural, phonon and optical properties of perovskite-type heterometallic formates templated by methylammonium cations.
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Affiliation(s)
- Maciej Ptak
- Institute of Low Temperature and Structure Research
- Polish Academy of Sciences
- Wrocław
- Poland
| | - Błażej Dziuk
- Department of Chemistry
- Opole University
- Opole
- Poland
| | - Dagmara Stefańska
- Institute of Low Temperature and Structure Research
- Polish Academy of Sciences
- Wrocław
- Poland
| | - Krzysztof Hermanowicz
- Institute of Low Temperature and Structure Research
- Polish Academy of Sciences
- Wrocław
- Poland
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26
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Piontek A, Bisz E, Dziuk B, Szostak R, Szostak M. Structures and energetic properties of 4-halobenzamides. Acta Crystallogr C Struct Chem 2018; 74:1395-1402. [PMID: 30398194 DOI: 10.1107/s2053229618013463] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2018] [Accepted: 09/20/2018] [Indexed: 01/17/2023]
Abstract
The amide bond represents one of the most fundamental functional groups in chemistry. The properties of amides are defined by amidic resonance (nN→π*C=O conjugation), which enforces planarity of the six atoms comprising the amide bond. Despite the importance of 4-halo-substituted benzamides in organic synthesis, molecular interactions and medicinal chemistry, the effect of 4-halo-substitution on the properties of the amide bond in N,N-disubstituted benzamides has not been studied. Herein, we report the crystal structures and energetic properties of a full series of 4-halobenzamides. The structures of four 4-halobenzamides (halo = iodo, bromo, chloro and fluoro) in the N-morpholinyl series have been determined, namely 4-[(4-halophenyl)carbonyl]morpholine, C11H12XNO2, for halo = iodo (X = I), bromo (X = Br), chloro (X = Cl) and fluoro (X = F). Computations have been used to determine the effect of halogen substitution on the structures and resonance energies. 4-Iodo-N-morpholinylbenzamide crystallized with a significant distortion of the amide bond (τ + χN = 33°). The present study supports the correlation between the Ar-C(O) axis twist angle and the twist angle of the amide N-C(O) bond. Comparison of resonance energies in synthetically valuable N-morpholinyl and N-piperidinyl amides demonstrates that the O atom of the morpholinyl ring has a negligible effect on amidic resonance in the series.
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Affiliation(s)
- Aleksandra Piontek
- Department of Chemistry, University of Opole, 48 Oleska Street, Opole 45-052, Poland
| | - Elwira Bisz
- Department of Chemistry, University of Opole, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Department of Chemistry, University of Opole, 48 Oleska Street, Opole 45-052, Poland
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, NJ 07102, USA
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Jasiak K, Kudelko A, Gajda K, Dziuk B, Zarychta B, Ejsmont K. Preparation and molecular structures of N′-(2-heteroarylmethylidene)-3-(3-pyridyl)acrylohydrazides. Zeitschrift für Naturforschung B 2018. [DOI: 10.1515/znb-2018-0132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The crystal and molecular structures of N′-(2-furylmethylidene)-3-(3-pyridyl)acrylohydrazide and N′-(2-thienylmethylidene)-3-(3-pyridyl)acrylohydrazide are reported, and the influence of the type of the heteroatom on the aromaticity of the aromatic rings is discussed. Both molecules are nearly planar. The geometry of the acrylohydrazide arrangement is comparable to that of homologous compounds. Density functional theory (DFT) calculations were performed in order to analyze the changes in the geometry of the studied compounds in the crystalline state and for the isolated molecule. The most significant changes were observed in the values of the N–N and C–N bond lengths. The harmonic oscillator model of aromaticity index, calculated for the furan and thiophene rings, demonstrated a noticeable increase in aromaticity in comparison to isolated rings and their DFT-calculated structures. By contrast, the nucleus independent chemical shift index indicated a decrease in aromatic character of the rings containing heteroatoms.
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Affiliation(s)
- Karolina Jasiak
- Department of Chemical Organic Technology and Petrochemistry , The Silesian University of Technology, Krzywoustego 4 , Gliwice 44-100 , Poland
| | - Agnieszka Kudelko
- Department of Chemical Organic Technology and Petrochemistry , The Silesian University of Technology, Krzywoustego 4 , Gliwice 44-100 , Poland
| | - Katarzyna Gajda
- Faculty of Chemistry , University of Opole, Oleska 48 , Opole 45-052 , Poland
| | - Błażej Dziuk
- Faculty of Chemistry , University of Opole, Oleska 48 , Opole 45-052 , Poland
| | - Bartosz Zarychta
- Faculty of Chemistry , University of Opole, Oleska 48 , Opole 45-052 , Poland
| | - Krzysztof Ejsmont
- Faculty of Chemistry , University of Opole, Oleska 48 , Opole 45-052 , Poland
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Dziuk B, Jezuita A. 2,2′-Bipyridin-1-ium hemioxalate oxalic acid monohydrate. IUCr Data 2018. [DOI: 10.1107/s2414314618012191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The asymmetric unit of the title compound, C10H9N2
+·0.5C2O4
2−·C2H2O4·H2O, consists of a 2,2′-bipyridinium cation, half an oxalate dianion, one oxalic acid and one water molecule. One N atom in 2,2′-bipyridine is unprotonated, while the second is protonated and forms an N—H...O hydrogen bond. In the crystal, the anions are connected with surrounding acid molecules and water molecules by strong near-linear O—H...O hydrogen bonds. The water molecules are located between the anions and oxalic acids; their O atoms participate as donors and acceptors, respectively, in O—H...O hydrogen bonds, which form sheets arranged parallel to the ac plane.
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Olesiejuk M, Kudelko A, Gajda K, Dziuk B, Ejsmont K. π-Electron delocalization in 2-benzoyl-5-phenylpyrazolidin-3-one. Zeitschrift für Naturforschung B 2018. [DOI: 10.1515/znb-2018-0072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The crystal and molecular structures of 2-benzoyl-5-phenylpyrazolidin-3-one have been characterized by X-ray diffraction along with density functional theory studies. Cinnamic acid chloride was reacted with benzhydrazide, yielding 2-benzoyl-5-phenylpyrazolidin-3-one. This product was formed in the transformation comprising the nucleophilic addition of benzhydrazide to the styryl fragment of the α,β-unsaturated arrangement and subsequent cyclization. The molecule contains two benzene rings and one five-membered heterocyclic ring with an N–N single bond. The five-membered ring is composed of three atoms of sp
3 hybridization and two atoms of sp
2 hybridization, which cause the flattening of the heterocyclic ring. The Harmonic Oscillator Model of Aromaticity and Nucleus-Independent Chemical Shift indexes, calculated for the benzene rings, demonstrate that there are no substantial interactions between the regions of π-electron delocalization in the molecule. In the crystal structure, there are N–H···O hydrogen bonds that link the molecules along the crystallographic c axis and weak intermolecular C–H···O hydrogen bonds.
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Affiliation(s)
- Monika Olesiejuk
- Department of Chemical Organic Technology and Petrochemistry , The Silesian University of Technology , Krzywoustego 4 , 44-100 Gliwice , Poland
| | - Agnieszka Kudelko
- Department of Chemical Organic Technology and Petrochemistry , The Silesian University of Technology , Krzywoustego 4 , 44-100 Gliwice , Poland
| | - Katarzyna Gajda
- Faculty of Chemistry, University of Opole , Oleska 48 , 45-052 Opole , Poland
| | - Błażej Dziuk
- Faculty of Chemistry, University of Opole , Oleska 48 , 45-052 Opole , Poland
| | - Krzysztof Ejsmont
- Faculty of Chemistry, University of Opole , Oleska 48 , 45-052 Opole , Poland
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Bereska B, Czaja K, Dziuk B, Zarychta B, Ejsmont K, Iłowska J, Szmatoła M, Bereska A. Triclinic conformational polymorph of N, N, N′, N′-tetrakis(2-cyanoethyl)-1,2-ethylenediamine (TCED). Zeitschrift für Naturforschung B 2018. [DOI: 10.1515/znb-2018-0015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The crystal and molecular structures of two polymorphs of N,N,N′,N′-tetrakis(2-cyanoethyl)-1,2-ethylenediamine have been characterized by X-ray diffraction along with density functional theory (DFT) studies. The molecules differ from each other by conformation. N,N,N′,N′-tetrakis(2-cyanoethyl)-1,2-ethylenediamine has been synthesized by cyanoethylation of ethylenediamine. Cyanoethylation of vicinal diamines is important for the synthesis of hyperbranched polymeric materials applied as catalysts, surfactants and encapsulating agents in drug delivery systems. The molecular geometry of N,N,N′,N′-tetracyanoethyl-1,2-ethylenediamine is similar to that of homologous compounds. DFT calculations were performed to analyze the differences in the molecular geometry of the studied compounds in a crystalline state and for an isolated molecule.
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Affiliation(s)
- Bartłomiej Bereska
- Institute of Heavy Organic Synthesis “Blachownia” , Speciality Chemicals Department , 47-225 Kędzierzyn-Koźle , Poland
| | - Krystyna Czaja
- Faculty of Chemistry, University of Opole , 45-052 Opole , Poland
| | - Błażej Dziuk
- Faculty of Chemistry, University of Opole , 45-052 Opole , Poland
| | - Bartosz Zarychta
- Faculty of Chemistry, University of Opole , 45-052 Opole , Poland
| | | | - Jolanta Iłowska
- Institute of Heavy Organic Synthesis “Blachownia” , Speciality Chemicals Department , 47-225 Kędzierzyn-Koźle , Poland
| | - Michał Szmatoła
- Institute of Heavy Organic Synthesis “Blachownia” , Speciality Chemicals Department , 47-225 Kędzierzyn-Koźle , Poland
| | - Agnieszka Bereska
- Institute of Heavy Organic Synthesis “Blachownia” , Speciality Chemicals Department , 47-225 Kędzierzyn-Koźle , Poland
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Dziuk B, Kyzioł JB, Zaleski J, Ejsmont K, Zarychta B. Synthesis of 2-Aminothiazole Derivatives in Easy Two-Step, One-Pot Reaction. J Heterocycl Chem 2018. [DOI: 10.1002/jhet.3086] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Błażej Dziuk
- Institute of Chemistry; University of Opole; 45-052 Opole ul. Oleska 48 Poland
| | - Janusz B. Kyzioł
- Institute of Chemistry; University of Opole; 45-052 Opole ul. Oleska 48 Poland
| | - Jacek Zaleski
- Institute of Chemistry; University of Opole; 45-052 Opole ul. Oleska 48 Poland
| | - Krzysztof Ejsmont
- Institute of Chemistry; University of Opole; 45-052 Opole ul. Oleska 48 Poland
| | - Bartosz Zarychta
- Institute of Chemistry; University of Opole; 45-052 Opole ul. Oleska 48 Poland
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32
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Bisz E, Piontek A, Dziuk B, Szostak R, Szostak M. Barriers to Rotation in ortho-Substituted Tertiary Aromatic Amides: Effect of Chloro-Substitution on Resonance and Distortion. J Org Chem 2018; 83:3159-3163. [DOI: 10.1021/acs.joc.8b00019] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Elwira Bisz
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Aleksandara Piontek
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Błażej Dziuk
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
| | - Roman Szostak
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, Wroclaw 50-383, Poland
| | - Michal Szostak
- Department of Chemistry, Opole University, 48 Oleska Street, Opole 45-052, Poland
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
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Abstract
There is one independent molecule in the asymmetric unit of the title compound (alternatively namedN-hydroxyacetamide), C2H5NO2. It crystallizes in the noncentrosymmetric space groupP43. The structure is an anhydrous form of acetylhydroxamic acid with typical geometry that corresponds well with the hydrated structure described by Bracher & Small [Acta Cryst.(1970), B26, 1705–1709]. In the crystal, N—H...O and O—H...O hydrogen bonds connect the molecules into chains in thec-axis direction.
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34
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Dziuk B, Ośmiałowski B, Zakrzewska A, Ejsmont K, Zarychta B. 2,2-Difluoro-3-(4-fluorophenyl)-2 H-benzo[ e][1,3,2]oxazaborinin-3-ium-2-uide. IUCr Data 2017. [DOI: 10.1107/s2414314617011099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
There is one independent molecule in the asymmetric unit of the title compound, C13H9BF3NO, which crystallizes in the non-centrosymmetric space groupCc. In the molecular structure, the BF2-carrying ring is distorted from planarity and its mean plane makes a dihedral angle of 42.3 (1)° with the 4-fluorophenyl ring. F atoms are involved in all of the short intermolecular contacts of the crystal structure, which link molecules to form chains along [001] and [010].
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35
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Dziuk B, Ośmiałowski B, Skotnicka A, Ejsmont K, Zarychta B. 2-[4-(Dimethylamino)phenyl]-3,3-difluoro-3 H-naphtho[1,2- e][1,3,2]oxazaborinin-2-ium-3-uide. IUCr Data 2017. [DOI: 10.1107/s2414314617011415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
In the title compound, C19H17BF2N2O, a twist about the N—C single bond is observed, making the cross conjugation not as efficient as in the case of a planar structure. The borone complex has tetrahedral geometry. In the crystal, molecules are conected by weak C—H...F hydrogen bonds.
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36
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Lenartowicz P, Dziuk B, Zarychta B, Makowski M, Kafarski P. Michael additions to double bonds of esters of N-protected (s)-phenylalanyldehydroalanine (X-(s)-Phe-ΔAla-OMe) and its phosphonic acid counterpart (X-(s)-Phe-ΔAla-PO(OEt)2). PHOSPHORUS SULFUR 2017. [DOI: 10.1080/10426507.2017.1308933] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
| | - Błażej Dziuk
- Faculty of Chemistry, Opole University, Opole, Poland
| | | | | | - Paweł Kafarski
- Faculty of Chemistry, Wrocław University of Science and Technology, Wrocław, Poland
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37
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Gajda K, Dziuk B, Daszkiewicz Z, Zarychta B. N, N-Dicyclohexylnitramine. IUCr Data 2016. [DOI: 10.1107/s2414314616015133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Molecules of the title compound, C12H22N2O2, are composed of an nitramine group substituted by two cyclohexane rings. The cyclohexane rings have chair conformations, with the exocyclic C—N bonds in axial orientations. In the crystal, C—H...O hydrogen bonds connect the molecules intoC(6) [-101] zigzag chains.
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38
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Gajda K, Dziuk B, Daszkiewicz Z. 4-Fluoro- N-methyl- N-nitroaniline. IUCr Data 2016. [DOI: 10.1107/s2414314616014462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Molecules of the title compound, C7H7FN2O2, are composed of a nitramine group which is twisted with the respect to the aromatic ring, with an N—N—C—C torsion angle of −117.38 (12)°. In the molecule, the N—N bond length [1.3510 (15) Å] indicates some double-bond character, while the angle between the aromatic ring and the nitramine group rules out further delocalization in the molecule. In the crystal, C—H...F hydrogen bonds connect the molecules intoC11(6) chains along theaaxis. C—H...O hydrogen bonds form, which featureR22(12) loops and further connect these chains.
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39
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Abstract
In the title compound, C8H11N3O·0.5C6F4I2, molecules ofiPr-substituted pyrazine are co-crystallized with 1,4-diiodo-2,3,5,6-tetrafluorobenzene. The complete molecule of 1,4-diiodo-2,3,5,6-tetrafluorobenzene is generated by an inversion centre at the middle of the aromatic ring. Both molecules have normal geometry and theiPr acylamine group is disordered over two sets of sites with an occupancy ratio of 0.51:0.49. In the crystal, the components are linked by I...N halogen bonds [2.830 (2) Å] and C—H...F interactions are observed.
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40
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Dziuk B, Ośmiałowski B, Ejsmont K, Zarychta B. N, N′-Bis(pyridin-2-yl)octanediamide. IUCr Data 2016. [DOI: 10.1107/s2414314616013092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
The complete molecule of the title compound, C18H22N4O2, is generated by crystallographic inversion symmetry. In the crystal, N—H...N hydrogen bonds connect the molecules into [010] chains, which featureR22(8) loops. The packing is consolidated by C—H...O interactions.
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Abstract
Molecules of the title compound, C15H19N3O, are composed of an adamantine unit and a pyrazine ring connected to each other through an amide bond. The H—N—C=O moiety is close to planar [C—N—C—O and C—N—C—C torsion angles of 4.7 (2) and −173.8 (1)°, respectively]. The N3—C5 bond has partial double-bond character [1.370 (1) Å]. The geometries of the pyrazine ring and the adamantane substituent are normal and in good agreement with closely related structures. In the crystal, molecules are connected by N—H...O hydrogen bonds, forming zigzag chains in the [001] direction and are arranged in a herringbone fashion.
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42
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Dziuk B, Zarychta B, Ejsmont K. Crystal structure of bis-(allyl-ammonium) oxalate. Acta Crystallogr Sect E Struct Rep Online 2014; 70:o1229-30. [PMID: 25553015 PMCID: PMC4257458 DOI: 10.1107/s1600536814023617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2014] [Accepted: 10/27/2014] [Indexed: 11/26/2022]
Abstract
The title salt, 2C3H8N+·C2O42−, crystallized with six independent allylammonium cations and three independent oxalate dianions in the asymmetric unit. One of the oxalate dianions is nearly planar [dihedral angle between CO2 planes = 1.91 (19)°], while the other two are twisted with angles of 11.3 (3) and 26.09 (13)°. One cation has a synperiplanar (cis) conformation with an N—C—C—C torsion angle of 0.9 (3)°, whereas the five remaining cations are characterized by gauche arrangements, with the N—C—C—C torsion angles ranging from 115.9 (12) to 128.8 (3)°. One of the allylammonium cations is positionally disordered (fixed occupancy ratio = 0.45:0.55). In the crystal, the cations and anions are connected by a number of strong N—H⋯O and N—H⋯(O,O) hydrogen bonds, forming layers parallel to (001), with the vinyl groups protruding into the space between the layers.
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Affiliation(s)
- Błażej Dziuk
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Bartosz Zarychta
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Krzysztof Ejsmont
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
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43
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Dziuk B, Zarychta B, Ejsmont K. Crystal structure of iso-butyl-ammonium hydrogen oxalate hemihydrate. Acta Crystallogr Sect E Struct Rep Online 2014; 70:o1175. [PMID: 25484814 PMCID: PMC4257255 DOI: 10.1107/s1600536814022697] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2014] [Accepted: 10/16/2014] [Indexed: 11/25/2022]
Abstract
In the title hydrated molecular salt, C4H12N+·C2HO4−·0.5H2O, the O atom of the water molecule lies on a crystallographic twofold axis. The dihedral angle between the CO2 and CO2H planes of the anion is 18.47 (8)°. In the crystal, the anions are connected to each other by strong near-linear O—H⋯O hydrogen bonds. The water molecules are located between the chains of anions and isobutylamine cations; their O atoms participate as donors and acceptors, respectively, in O—H⋯O and N—H⋯O hydrogen bonds, which form channels (dimensions = 4.615 and 3.387 Å) arranged parallel to [010].
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Affiliation(s)
- Błażej Dziuk
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Bartosz Zarychta
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Krzysztof Ejsmont
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
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44
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Dziuk B, Zarychta B, Ejsmont K. Crystal structure of allyl-ammonium hydrogen succinate at 100 K. Acta Crystallogr Sect E Struct Rep Online 2014; 70:o917-8. [PMID: 25309251 PMCID: PMC4186065 DOI: 10.1107/s1600536814015633] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2014] [Accepted: 07/04/2014] [Indexed: 12/04/2022]
Abstract
The asymmetric unit of the title compound, C2H8N+·C4H5O4−, consists of two allylammonium cations and two hydrogen succinate anions (Z′ = 2). One of the cations has a near-perfect syn-periplanar (cis) conformation with an N—C—C—C torsion angle of 0.4 (3)°, while the other is characterized by a gauche conformation and a torsion angle of 102.5 (3)°. Regarding the anions, three out of four carboxilic groups are twisted with respect to the central C–CH2–CH2–C group [dihedral angles = 24.4 (2), 31.2 (2) and 40.4 (2)°], the remaining one being instead almost coplanar, with a dihedral angle of 4.0 (2)°. In the crystal, there are two very short, near linear O—H⋯O hydrogen bonds between anions, with the H atoms shifted notably from the donor O towards the O⋯O midpoint. These O—H⋯O hydrogen bonds form helical chains along the [011] which are further linked to each other through N—H⋯O hydrogen bonds (involving all the available NH groups), forming layers lying parallel to (100).
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Affiliation(s)
- Błażej Dziuk
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Bartosz Zarychta
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Krzysztof Ejsmont
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
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45
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Abstract
In the title hydrated mol-ecular salt, C3H8N(+)·C2HO4 (-)·0.5H2O, the water O atom lies on a crystallographic twofold axis. The C=C-C-N torsion angle in the cation is 2.8 (3)° and the dihedral angle between the CO2 and CO2H planes in the anion is 1.0 (4)°. In the crystal, the hydrogen oxalate ions are linked by O-H⋯O hydrogen bonds, generating [010] chains. The allyl-ammonium cations bond to the chains through N-H⋯O and N-H⋯(O,O) hydrogen bonds. The water mol-ecule accepts two N-H⋯O hydrogen bonds and makes two O-H⋯O hydrogen bonds. Together, the hydrogen bonds generate (100) sheets.
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Affiliation(s)
- Błażej Dziuk
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Bartosz Zarychta
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
| | - Krzysztof Ejsmont
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
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