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Dos Santos DS, Ribeiro PG, Andrade R, Silva SHG, Gastauer M, Caldeira CF, Guedes RS, Dias YN, Souza Filho PWM, Ramos SJ. Clean and accurate soil quality monitoring in mining areas under environmental rehabilitation in the Eastern Brazilian Amazon. Environ Monit Assess 2024; 196:385. [PMID: 38507123 DOI: 10.1007/s10661-024-12495-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Accepted: 02/24/2024] [Indexed: 03/22/2024]
Abstract
Soil quality monitoring in mining rehabilitation areas is a crucial step to validate the effectiveness of the adopted recovery strategy, especially in critical areas for environmental conservation, such as the Brazilian Amazon. The use of portable X-ray fluorescence (pXRF) spectrometry allows a rapid quantification of several soil chemical elements, with low cost and without residue generation, being an alternative for clean and accurate environmental monitoring. Thus, this work aimed to assess soil quality in mining areas with different stages of environmental rehabilitation based on predictions of soil fertility properties through pXRF along with four machine learning algorithms (projection pursuit regression, PPR; support vector machine, SVM; cubist regression, CR; and random forest, RF) in the Eastern Brazilian Amazon. Sandstone and iron mines in different chronological stages of rehabilitation (initial, intermediate, and advanced) were evaluated, in addition to non-rehabilitated and native forest areas. A total of 81 soil samples (26 from sandstone mine and 55 from iron mine) were analyzed by both traditional wet-chemistry methods and pXRF. The available/exchangeable contents of K, Ca, B, Fe, and Al, in addition to H+Al, cation exchange capacity at pH = 7, Al saturation, soil organic matter, pH, sum of bases, base saturation, clay, and sand were accurately predicted (R2 > 0.70) using pXRF data, with emphasis on the prediction of Fe (R2 = 0.93), clay content (R2 = 0.81), H+Al (R2 = 0.81), and K+ (R2 = 0.85). The best predictive models were developed by RF and CR (86%) and when considering pXRF data + mining area + stage of rehabilitation (73%). The results highlight the potential of pXRF to accurately assess soil properties in environmental rehabilitation areas in the Amazon region (yet scarcely evaluated under this approach), promoting a more agile and cheaper preliminary diagnosis compared to traditional methods.
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Affiliation(s)
| | - Paula Godinho Ribeiro
- Instituto Tecnológico Vale, Rua Boaventura da Silva, 955, Belém, PA, 66055-090, Brazil
| | - Renata Andrade
- Soil Science Department, Federal University of Lavras, Lavras, MG, 37200-900, Brazil
| | | | - Markus Gastauer
- Instituto Tecnológico Vale, Rua Boaventura da Silva, 955, Belém, PA, 66055-090, Brazil
| | | | - Rafael Silva Guedes
- Federal University of the South and Southeast of Pará, Xinguara, Pará, Brazil
| | - Yan Nunes Dias
- Instituto Tecnológico Vale, Rua Boaventura da Silva, 955, Belém, PA, 66055-090, Brazil
| | | | - Silvio Junio Ramos
- Instituto Tecnológico Vale, Rua Boaventura da Silva, 955, Belém, PA, 66055-090, Brazil.
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Andrade R, Silva SHG, Benedet L, Mancini M, Lima GJ, Nascimento K, Amaral FHC, Silva DRG, Ottoni MV, Carneiro MAC, Curi N. Proximal sensing provides clean, fast, and accurate quality control of organic and mineral fertilizers. Environ Res 2023; 236:116753. [PMID: 37500037 DOI: 10.1016/j.envres.2023.116753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 07/21/2023] [Accepted: 07/25/2023] [Indexed: 07/29/2023]
Abstract
Farms use large quantities of fertilizers from many sources, making quality control a challenging task, as the traditional wet-chemistry analyses are expensive, time consuming and not environmentally-friendly. As an alternative, this work proposes the use of portable X-ray fluorescence (pXRF) spectrometry and machine learning algorithms for rapid and low-cost estimation of macro and micronutrient contents in mineral and organic fertilizers. Four machine learning algorithms were tested. Whole (i.e., as delivered by the manufacturer) (CP) and ground (AQ) samples (429 in total) were analyzed to test the effect of fertilizer granulometry in prediction performance. Model validation indicated highly accurate predictions of macro (N: R2 = 0.92; P: 0.97; K: 0.99; Ca: 0.94, Mg: 0.98; S: 0.96) and micronutrients (B: 0.99; Cu: 0.99; Fe: 0.98; Mn: 0.91; Zn: 0.94) for both organic and mineral fertilizers. RPD values ranged from 2.31 to 9.23 for AQ samples, and Random Forest and Cubist Regression were the algorithms with the best performances. Even samples analyzed as they were received from the manufacturer (i.e., no grinding) provided accurate predictions, which accelerate the confirmation of nutrient contents contained in fertilizers. Results demonstrated the potential of pXRF data coupled with machine learning algorithms to assess nutrient composition in both mineral and organic fertilizers with high accuracy, allowing for clean, fast and accurate quality control. Sensor-driven quality assessment of fertilizers improves soil and plant health, crop management efficiency and food security with a reduced environmental footprint.
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Affiliation(s)
- Renata Andrade
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, Minas Gerais, Brazil.
| | | | - Lucas Benedet
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, Minas Gerais, Brazil.
| | - Marcelo Mancini
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, Minas Gerais, Brazil.
| | - Geraldo Jânio Lima
- Agriculture Promotion Company, CAMPO, Lindolfo García Adjuto, 1000, 38606-026, Paracatu, Minas Gerais, Brazil.
| | - Kauan Nascimento
- Eldorado Brasil, BR-158, Km 231, 79641-300, Três Lagoas, Mato Grosso do Sul, Brazil.
| | | | - Douglas Ramos Guelfi Silva
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, Minas Gerais, Brazil.
| | - Marta Vasconcelos Ottoni
- Department of Hydrology, Geological Survey of Brazil, Av. Pasteur, 404, Urca, Rio de Janeiro, RJ, 22290-240, Brazil.
| | | | - Nilton Curi
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, Minas Gerais, Brazil.
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T Silva de Sá R, Tesser Antunes Prianti M, Andrade R, Oliveira Silva A, Rodrigues Batista É, Valentim Dos Santos J, Magno Silva F, Aurélio Carbone Carneiro M, Roberto Guimarães Guilherme L, Chakraborty S, C Weindorf D, Curi N, Henrique Godinho Silva S, Teixeira Ribeiro B. Detailed characterization of iron-rich tailings after the Fundão dam failure, Brazil, with inclusion of proximal sensors data, as a secure basis for environmental and agricultural restoration. Environ Res 2023; 228:115858. [PMID: 37062481 DOI: 10.1016/j.envres.2023.115858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 03/27/2023] [Accepted: 04/04/2023] [Indexed: 05/16/2023]
Abstract
Following the Fundão dam failure in Brazil, 60 million m3 of iron-rich tailings were released impacting an extensive area. After this catastrophe, a detailed characterization and monitoring of iron-rich tailings is required for agronomic and environmental purposes. This can be facilitated by using proximal sensors which have been an efficient, fast, and cost-effective tool for eco-friendly analysis of soils and sediments. This work hypothesized that portable X-ray fluorescence (pXRF) spectrometry combined with a pocket-sized (Nix™ Pro) color sensor and benchtop magnetic susceptibilimeter can produce substantial data for fast and clean characterization of iron-rich tailings. The objectives were to differentiate impacted and non-impacted areas (soils and sediments) based on proximal sensors data, and to predict attributes of agronomic and environmental importance. A total of 148 composite samples were collected on totally impacted, partially impacted, and non-impacted areas (natural soils). The samples were analyzed via pXRF to obtain the total elemental composition; via Nix™ Pro color sensor to obtain the red (R), green (G), and blue (B) parameters; and assessed for magnetic susceptibility (MS). The same samples used for analyses via the aforementioned sensors were wet-digested (USEPA 3051a method) followed by ICP-OES quantification of potentially toxic elements. Principal component analysis was performed to differentiate impacted and non-impacted areas. The pXRF data alone or combined with other sensors were used to predict soil agronomic properties and semi-total concentration of potentially toxic elements via random forest regression. For that, samples were randomly separated into modeling (70%) and validation (30%) datasets. The pXRF proved to be an efficient method for rapid and eco-friendly characterization of iron-rich tailings, allowing a clear differentiation of impacted and non-impacted areas. Also, important soil agronomic properties (clay, cation exchange capacity, soil organic carbon, pH and macronutrients availability) and semi-total concentrations of Ba, Pb, Cr, V, Cu, Co, Ni, Mn, Ti, and Li were accurately predicted (based upon the lowest RMSE and highest R2 and RPD values). Sensor data fusion (pXRF + Nix Pro + MS) slightly improved the accuracy of predictions. This work highlights iron-rich tailings from the Fundão dam failure can be in detail characterized via pXRF ex situ, providing a secure basis for complementary studies in situ aiming at identify contaminated hot spots, digital mapping of soil and properties variability, and embasing pedological, agricultural and environmental purposes.
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Affiliation(s)
| | | | - Renata Andrade
- Department of Soil Science, Federal University of Lavras, Lavras, 37200000, Brazil
| | - Aline Oliveira Silva
- Department of Soil Science, Federal University of Lavras, Lavras, 37200000, Brazil
| | | | | | - Fernanda Magno Silva
- Department of Soil Science, Federal University of Lavras, Lavras, 37200000, Brazil
| | | | | | | | - David C Weindorf
- Department of Earth and Atmospheric Sciences, Central Michigan University, Mount Pleasant, MI, 48859, USA
| | - Nilton Curi
- Department of Soil Science, Federal University of Lavras, Lavras, 37200000, Brazil
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Benedet L, Silva SHG, Mancini M, Andrade R, Amaral FHC, Lima GJ, Carneiro MAC, Curi N. Clean quality control of agricultural and non-agricultural lime by rapid and accurate assessment of calcium and magnesium contents via proximal sensors. Environ Res 2023; 221:115300. [PMID: 36649846 DOI: 10.1016/j.envres.2023.115300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Revised: 12/29/2022] [Accepted: 01/11/2023] [Indexed: 06/17/2023]
Abstract
Ca and Mg are the most important chemical elements in lime. Properly measuring Ca and Mg contents is essential to assess the quality of lime products. Quality control guarantees the adequate use of lime in industrial processes, in soils, and helps avoiding adulteration. Proximal sensors can aid in this process by determining Ca and Mg contents easily, rapidly and without producing chemical waste. The objective of this study was to evaluate the use an environmentally-friendly method of analyzing the quality of lime. We studied 1) the use of portable X-ray fluorescence (pXRF) to predict concentrations of Ca and Mg in lime, 2) tested if NixPro™ sensor can improve prediction accuracy and 3) tested if sample preparation methods (grinding) affect analyses. 74 samples of lime were analyzed by two different laboratories (lab. 1 = 38, lab. 2 = 36). All samples submitted to pXRF and NixPro™ analyses. Sensor analyses were done in whole (CP) and ground (AQ) samples to test the effect of sample preparation in prediction performance. High correlation was found between Ca and Mg contents measured via pXRF and laboratory analyses. Mg-CP presented the highest correlation coefficient (r = 0.81); Mg-AQ, the lowest (0.57). Predictions presented good performance (R2 > 0.68); Mg had the best results (0.86). Separating models per laboratory showed that some datasets are harder to model, probably due to variability in the source material (limestone). The addition of NixPro™ data contributed to improve prediction accuracy, although slightly. Predictions using CP samples presented the best results, especially for Mg, indicating that grinding is not necessary. This pioneer study demonstrated that fused proximal sensors can be used to rapidly and easily determine contents of Ca and Mg in soil amendments without producing chemical waste.
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Affiliation(s)
- Lucas Benedet
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, State of Minas Gerais, Brazil
| | - Sérgio Henrique Godinho Silva
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, State of Minas Gerais, Brazil
| | - Marcelo Mancini
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, State of Minas Gerais, Brazil
| | - Renata Andrade
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, State of Minas Gerais, Brazil
| | | | - Geraldo Jânio Lima
- Agriculture Promotion Company, CAMPO. Paracatu, State of Minas Gerais, Brazil
| | | | - Nilton Curi
- Dept. of Soil Science, Federal University of Lavras, P.O. Box 3037, 37200-900, Lavras, State of Minas Gerais, Brazil.
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Andrade R, Silva SHG, Benedet L, de Araújo EF, Carneiro MAC, Curi N. A Proximal Sensor-Based Approach for Clean, Fast, and Accurate Assessment of the Eucalyptus spp. Nutritional Status and Differentiation of Clones. Plants (Basel) 2023; 12:561. [PMID: 36771645 PMCID: PMC9919597 DOI: 10.3390/plants12030561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 01/21/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Several materials have been characterized using proximal sensors, but still incipient efforts have been driven to plant tissues. Eucalyptus spp. cultivation in Brazil covers approximately 7.47 million hectares, requiring faster methods to assess plant nutritional status. This study applies portable X-ray fluorescence (pXRF) spectrometry to (i) distinguish Eucalyptus clones using pre-processed pXRF data; and (ii) predict the contents of eleven nutrients in the leaves of Eucalyptus (B, Ca, Cu, Fe, K, Mg, Mn, N, P, S, and Zn) aiming to accelerate the diagnosis of nutrient deficiency. Nine hundred and twenty samples of Eucalyptus leaves were collected, oven-dried, ground, and analyzed using acid-digestion (conventional method) and using pXRF. Six machine learning algorithms were trained with 70% of pXRF data to model conventional results and the remaining 30% were used to validate the models using root mean square error (RMSE) and coefficient of determination (R2). The principal component analysis clearly distinguished developmental stages based on pXRF data. Nine nutrients were accurately predicted, including N (not detected using pXRF spectrometry). Results for B and Mg were less satisfactory. This method can substantially accelerate decision-making and reduce costs for Eucalyptus foliar analysis, constituting an ecofriendly approach which should be tested for other crops.
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Affiliation(s)
- Renata Andrade
- Department of Soil Science, Federal University of Lavras, Lavras 37200-900, MG, Brazil
| | | | - Lucas Benedet
- Department of Soil Science, Federal University of Lavras, Lavras 37200-900, MG, Brazil
| | | | | | - Nilton Curi
- Department of Soil Science, Federal University of Lavras, Lavras 37200-900, MG, Brazil
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Torres I, Andrade R, Apoloni R, Da Silva E, Puech-leão P, De Luccia N. In Hospital and Long Term Outcomes of Patients Who Underwent Endo or Open Repair of Axillosubclavian Arterial Injuries. EJVES Vasc Forum 2023. [DOI: 10.1016/j.ejvsvf.2023.02.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2023] Open
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Bosacker L, Diaz Gutierrez I, Hordinsky M, Andrade R. LB940 A comprehensive evaluation of thoracoscopic sympathectomy for severe primary palmar hyperhidrosis. J Invest Dermatol 2022. [DOI: 10.1016/j.jid.2022.05.959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Pape S, Snijders RJALM, Gevers TJG, Chazouilleres O, Dalekos GN, Hirschfield GM, Lenzi M, Trauner M, Manns MP, Vierling JM, Montano-Loza AJ, Lohse AW, Schramm C, Drenth JPH, Heneghan MA, Alvarez F, Andrade R, Arikan C, Assis D, Bardou-Jacquet E, Biewenga M, Cancado E, Cazzagon N, Chazouillères O, Colloredo G, Cuarterolo M, Dalekos G, Debray D, Robles-Díaz M, Drenth J, Dyson J, Efe C, Engel B, Ferri S, Fontana R, Gatselis N, Gerussi A, Halilbasic E, Halliday N, Heneghan M, Hirschfield G, van Hoek B, Hørby Jørgensen M, Indolfini G, Iorio R, Jeong S, Jones D, Kelly D, Kerkar N, Lacaille F, Lammert C, Leggett B, Lenzi M, Levy C, Liberal R, Lleo A, Lohse A, Ines Lopez S, de Martin E, McLin V, Mieli-Vergani G, Milkiewicz P, Mohan N, Muratori L, Nebbia G, van Nieuwkerk C, Oo Y, Ortega A, Páres A, Pop T, Pratt D, Purnak T, Ranucci G, Rushbrook S, Schramm C, Stättermayer A, Swain M, Tanaka A, Taubert R, Terrabuio D, Terziroli B, Trauner M, Valentino P, van den Brand F, Villamil A, Wahlin S, Ytting H, Zachou K, Zeniya M. Systematic review of response criteria and endpoints in autoimmune hepatitis by the International Autoimmune Hepatitis Group. J Hepatol 2022; 76:841-849. [PMID: 35066089 DOI: 10.1016/j.jhep.2021.12.041] [Citation(s) in RCA: 53] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 11/18/2021] [Accepted: 12/11/2021] [Indexed: 12/12/2022]
Abstract
BACKGROUND & AIMS Autoimmune hepatitis (AIH) has been well characterised and codified through the development of diagnostic criteria. These criteria have been adapted and simplified and are widely used in clinical practice. However, there is a need to update and precisely define the criteria for both treatment response and treatment. METHODS A systematic review was performed and a modified Delphi consensus process was used to identify and redefine the response criteria in autoimmune hepatitis. RESULTS The consensus process initiated by the International Autoimmune Hepatitis Group proposes that the term 'complete biochemical response' defined as 'normalization of serum transaminases and IgG below the upper limit of normal' be adopted to include a time point at 6 months after initiation of treatment. An insufficient response by 6 months was a failure to meet the above definition. Non-response was defined as '<50% decrease of serum transaminases within 4 weeks after initiation of treatment'. Remission is defined as liver histology with a Hepatitis Activity Index <4/18. Intolerance to treatment was agreed to stand for 'any adverse event possibly related to treatment leading to potential drug discontinuation'. CONCLUSIONS These definitions provide a simple and reproducible framework to define treatment response and non-response, irrespective of the therapeutic intervention. A consensus on endpoints is urgently required to set a global standard for the reporting of study results and to enable inter-study comparisons. Future prospective database studies are needed to validate these endpoints. LAY SUMMARY Consensus among international experts on response criteria and endpoints in autoimmune hepatitis is lacking. A consensus on endpoints is urgently required to set a global standard for the reporting of study results and to enable the comparison of results between clinical trials. Therefore, the International Autoimmune Hepatitis Group (IAIHG) herein presents a statement on 5 agreed response criteria and endpoints: complete biochemical response, insufficient response, non-response, remission, and intolerance to treatment, which can be used to guide future reporting.
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Affiliation(s)
- Simon Pape
- Department of Gastroenterology and Hepatology, Radboud University Medical Center, Nijmegen, The Netherlands; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - Romée J A L M Snijders
- Department of Gastroenterology and Hepatology, Radboud University Medical Center, Nijmegen, The Netherlands; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - Tom J G Gevers
- Department of Gastroenterology and Hepatology, Radboud University Medical Center, Nijmegen, The Netherlands; Division of Gastroenterology and Hepatology, Maastricht University Medical Center, Maastricht 6229HX, The Netherlands; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - Oliver Chazouilleres
- Hepatology Department, Reference Center for Inflammatory Biliary Diseases and Autoimmune Hepatitis, Saint-Antoine Hospital Assistance Publique-Hôpitaux de Paris, Paris, France; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - George N Dalekos
- Department of Medicine and Research Laboratory of Internal Medicine, University of Thessaly Medical School, Larissa, Greece
| | - Gideon M Hirschfield
- Toronto Centre for Liver Disease, University Health Network, University of Toronto, Toronto, Canada
| | - Marco Lenzi
- Department of Medical and Surgical Sciences, Sant'Orsola-Malpighi, University of Bologna, Bologna, Italy
| | - Michael Trauner
- Division of Gastroenterology and Hepatology, Department of Internal Medicine III, Medical University of Vienna, Vienna, Austria; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - Michael P Manns
- Department of Gastroenterology, Hepatology and Endocrinology, Hannover Medical School, Hannover, Germany; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - John M Vierling
- Departments of Medicine and Surgery, Baylor College of Medicine, Houston, TX, USA
| | - Aldo J Montano-Loza
- Division of Gastroenterology and Hepatology, University of Alberta Hospital, Edmonton, Canada
| | - Ansgar W Lohse
- 1(st) Department of Internal Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - Christoph Schramm
- 1(st) Department of Internal Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany; Martin Zeitz Centre for Rare Diseases, University Medical Centre Hamburg-Eppendorf, Hamburg, Germany; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - Joost P H Drenth
- Department of Gastroenterology and Hepatology, Radboud University Medical Center, Nijmegen, The Netherlands; European Reference Network on Hepatological Diseases (ERN RARE-LIVER)
| | - Michael A Heneghan
- Institute of Liver Studies, King's College Hospital, London, United Kingdom; European Reference Network on Hepatological Diseases (ERN RARE-LIVER).
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Guerra-Pinto F, Cunha J, Sousa L, Gomes TM, Andrade R, Oliva XM, Consciência JG, Fernandes PR. Gravity stress tibiotalar laxity evaluation with a biomedical gyroscopes device - cadaver study with progressive sectioning of lateral ankle ligaments. J Exp Orthop 2020; 7:53. [PMID: 32696272 PMCID: PMC7374536 DOI: 10.1186/s40634-020-00269-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 07/01/2020] [Indexed: 11/29/2022] Open
Abstract
Purpose Despite the evidence on the role of gravity stress test to access the instability of other ankle injuries, there is limited literature regarding gravity stress on the lateral ankle ligament’s insufficiency. The objective of our study was to objectively measure the tibiotalar angular movement under gravity stress after progressive sectioning of the lateral ankle ligaments. Methods We performed sequential sectioning of the anterior talofibular (ATFL), calcaneofibular (CFL), and posterior talofibular ligaments (PTFL) in twelve ankle specimens. Under gravity stress, we measured the angular movement of the talus in relation to the tibia. The measuring device is based on a three-axis gyroscope and accelerometer. Results Comparing to the intact condition, the plantar flexion increased on average 1.78° (95% confidence interval [CI] 1.15;2.42), 5.13° (95%CI 3.10;7.16) and 8.63° (95%CI 6.05;11.22), the rotation increased by 1.00° (95 CI -0.51;2.51), 3.68° (95%CI 1.97;5.40) and 15.62° (95%CI 10.09;21.14), and the varus increased 2.89° (95% CI 1.39, 4.39), 8.12° (95% CI 5.16, 11.07) and 11.68° (95% CI 7.91, 15.46), after sectioning the ATFL, CFL, and PTFL, respectively. The overall changes were statistically significant. Conclusions There was a significant tibiotalar laxity after sectioning of lateral ankle ligaments when the foot position is influenced only by gravity. The tibiotalar angular displacement was significant when the CFL and PTFL were cut which suggests that the gravity test could be used to assess combined lateral ankle ligament injury. This evidence might be a step forward in the development of lateral ankle ligaments gravity stress tests. Level of evidence 5 (cadaver study)
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Affiliation(s)
- F Guerra-Pinto
- Department of Orthopaedics, Hospital Ortopédico de Sant'Ana, R. Benguela 501, 2775-229, Parede, Portugal. .,Department of Orthopaedics, Hospital da Cruz Vermelha Portuguesa, Lisbon, Portugal. .,NOVA Medical School, Lisbon NOVA University, Lisbon, Portugal. .,Department of Anatomy and Human Embryology, Faculty of Medicine, University of Barcelona, Barcelona, Spain.
| | - J Cunha
- IDMEC, Instituto Superior Técnico, Lisbon University, Lisbon, Portugal
| | - L Sousa
- IDMEC, Instituto Superior Técnico, Lisbon University, Lisbon, Portugal
| | - T M Gomes
- Department of Anatomy and Human Embryology, Faculty of Medicine, University of Barcelona, Barcelona, Spain
| | - R Andrade
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal. Dom Henrique Research Centre, Porto, Portugal.,Faculty of Sports, University of Porto, Porto, Portugal
| | - X M Oliva
- Department of Orthopedics, Clinica Del Remei, Barcelona, Spain.,Department of Anatomy and Human Embryology, Faculty of Medicine, University of Barcelona, Barcelona, Spain
| | - J G Consciência
- NOVA Medical School, Lisbon NOVA University, Lisbon, Portugal.,Head of Orthopaedics Departement at CHLO - S. F. Xavier Hospital, Lisbon, Portugal
| | - P R Fernandes
- IDMEC, Instituto Superior Técnico, Lisbon University, Lisbon, Portugal
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Mello F, Girão C, Castro CCB, Fiuza S, Andrade R, Pimentel L, Rocha PT, Ribeiro J, Fernandes E. De Mello's Single Incision for Combined Liver-kidney Transplantation, Keeping the Kidney Retroperitoneal: A Case Report. Transplant Proc 2017; 49:169-171. [PMID: 28104128 DOI: 10.1016/j.transproceed.2016.10.027] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Revised: 09/27/2016] [Accepted: 10/27/2016] [Indexed: 11/29/2022]
Abstract
The combined liver-kidney transplantation (cLKT) is the procedure of choice for patients with end-stage liver and kidney disease. In cLKT we can usually accommodate the grafts in two different ways, varying the kidney placement. The retroperitoneal kidney implant has some advantages, such as the easy access or avoiding vascular complications. We propose a new single incision, not yet reported, maintaining an extraperitoneal kidney, with excellent surgical field for cLKT and possible reduction of the impact of wound complications.
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Affiliation(s)
- F Mello
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil; Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
| | - C Girão
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil
| | - C C B Castro
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil
| | - S Fiuza
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil
| | - R Andrade
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil
| | - L Pimentel
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil
| | - P T Rocha
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil; Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - J Ribeiro
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil; Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - E Fernandes
- Silvestre Adventist Hospital, Rio de Janeiro, Brazil; Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
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11
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Araújo JP, Silva L, Andrade R, Paços M, Moreira H, Migueis N, Pereira R, Sarmento A, Pereira H, Loureiro N, Espregueira-Mendes J. Pain reduction and improvement of function following ultrasound-guided intra-articular injections of triamcinolone hexacetonide and hyaluronic acid in hip osteoarthritis. J BIOL REG HOMEOS AG 2016; 30:51-62. [PMID: 28002900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The scientific literature has shown positive results regarding intra-articular injections of hyaluronic acid in osteoarthritic joints. When injecting in the hip joint, the guidance of ultrasound can provide higher injection accuracy and repeatability. However, due to the methodological limitations in the current available literature, its recommendation in the current practice is still controversial. This study shows that ultrasound-guided intra-articular injections of triamcinolone hexacetonide and hyaluronic acid can improve pain, function and quality of life in patients with symptomatic and radiographic hip osteoarthritis. In addition, the administration of triamcinolone hexacetonide and hyaluronic acid to the hip joint in these patients can delay the need for interventional surgery.
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Affiliation(s)
- J P Araújo
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
- Football Medicine®, Portugal
- Al Jazira Football Club, Abu Dhabi, United Arab Emirates
| | - L Silva
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
- Dom Henrique Research Centre, Porto, Portugal
| | - R Andrade
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
- Dom Henrique Research Centre, Porto, Portugal
- Faculty of Sports, University of Porto, Porto, Portugal
| | - M Paços
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
| | - H Moreira
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
| | - N Migueis
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
| | - R Pereira
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
- Faculty of Sports, University of Porto, Porto, Portugal
- Faculty of Health Sciences, University of Fernando Pessoa, Porto, Portugal
| | - A Sarmento
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
- Dom Henrique Research Centre, Porto, Portugal
| | - H Pereira
- Dom Henrique Research Centre, Porto, Portugal
- Orthopaedic Department, Centro Hospitalar Póvoa de Varzim, Vila do Conde, Portugal
- 3B’s Research Group-Biomaterials, Biodegradables and Biomimetics, University of Minho, Headquarters of the European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Guimarães, Portugal
- ICVS/3B’s-PT Government Associate Laboratory, Braga/Guimarães, Portugal
- Ripoll y De Prado Sports Clinic FIFA Medical Centre of Excellence, Murcia-Madrid, Spain
| | - N Loureiro
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
- Football Medicine®, Portugal
- Dom Henrique Research Centre, Porto, Portugal
- FC Paços de Ferreira, Paços de Ferreira, Portugal
- Portuguese Federation of Cycling, Portugal
| | - J Espregueira-Mendes
- Clínica do Dragão, Espregueira-Mendes Sports Centre - FIFA Medical Centre of Excellence, Porto, Portugal
- Dom Henrique Research Centre, Porto, Portugal
- 3B’s Research Group-Biomaterials, Biodegradables and Biomimetics, University of Minho, Headquarters of the European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Guimarães, Portugal
- ICVS/3B’s-PT Government Associate Laboratory, Braga/Guimarães, Portugal
- Orthopaedics Department of Minho University, Minho, Portugal
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13
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McGregor KM, Bécamel C, Marin P, Andrade R. Using melanopsin to study G protein signaling in cortical neurons. J Neurophysiol 2016; 116:1082-92. [PMID: 27306679 DOI: 10.1152/jn.00406.2016] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Accepted: 06/13/2016] [Indexed: 11/22/2022] Open
Abstract
Our understanding of G protein-coupled receptors (GPCRs) in the central nervous system (CNS) has been hampered by the limited availability of tools allowing for the study of their signaling with precise temporal control. To overcome this, we tested the utility of the bistable mammalian opsin melanopsin to examine G protein signaling in CNS neurons. Specifically, we used biolistic (gene gun) approaches to transfect melanopsin into cortical pyramidal cells maintained in organotypic slice culture. Whole cell recordings from transfected neurons indicated that application of blue light effectively activated the transfected melanopsin to elicit the canonical biphasic modulation of membrane excitability previously associated with the activation of GPCRs coupling to Gαq-11 Remarkably, full mimicry of exogenous agonist concentration could be obtained with pulses as short as a few milliseconds, suggesting that their triggering required a single melanopsin activation-deactivation cycle. The resulting temporal control over melanopsin activation allowed us to compare the activation kinetics of different components of the electrophysiological response. We also replaced the intracellular loops of melanopsin with those of the 5-HT2A receptor to create a light-activated GPCR capable of interacting with the 5-HT2A receptor interacting proteins. The resulting chimera expressed weak activity but validated the potential usefulness of melanopsin as a tool for the study of G protein signaling in CNS neurons.
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Affiliation(s)
- K M McGregor
- Department of Pharmacology, Wayne State University, Detroit, Michigan; and
| | - C Bécamel
- Institut de Génomique Fonctionnelle, CNRS UMR5203, INSERM U1191, Université de Montpellier, Montpellier, France
| | - P Marin
- Institut de Génomique Fonctionnelle, CNRS UMR5203, INSERM U1191, Université de Montpellier, Montpellier, France
| | - R Andrade
- Department of Pharmacology, Wayne State University, Detroit, Michigan; and
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Silva FGD, Andrade R, Silva I, Cardoso A. Cross-cultural adaptation of the Cyberchondria Severity Scale for Brazilian Portuguese. Trends Psychiatry Psychother 2016; 38:90-5. [DOI: 10.1590/2237-6089-2015-0063] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Accepted: 01/14/2016] [Indexed: 11/22/2022]
Abstract
Abstract Introduction: The internet has proven to be a valuable resource for self-care, allowing access to information and promoting interaction between professionals, caregivers, users of health care services and people interested in health information. However, recurring searches are often related to excessive health anxiety and a phenomenon known as cyberchondria can have impacts on physical and mental health. Within this background, a Cyberchondria Severity Scale has been developed to differentiate healthy and unhealthy behavior in internet searches for health information, based on the following criteria: compulsion, distress, excesses, and trust and distrust of health professionals. Objective: To conduct cross-cultural adaptation of the Cyberchondria Severity Scale for Brazilian Portuguese, because of the lack of an appropriate instrument for Brazil. Methods: This study was authorized by the original author of the scale. The process was divided into the following four steps: 1) initial translation, 2) back-translation, 3) development of a synthesized version, and 4) experimental application. Results: Translation into Brazilian Portuguese required some idiomatic expressions to be adapted. In some cases, words were not literally translated from English into Portuguese. Only items 7, 8, 12, 23 and 27 were altered, as a means of both conforming to proper grammar conventions and achieving easy comprehension. The items were rewritten without loss of the original content. Conclusion: This paper presents a translated version of the Cyberchondria Severity Scale that has been semantically adapted for the Brazilian population, providing a basis for future studies in this area, which should in turn contribute to improved understanding of the cyberchondria phenomenon in this population.
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Pinto-da-Rocha R, Andrade R, Moreno-González JA. Two new cave-dwelling genera of short-tailed whip-scorpions from Brazil (Arachnida: Schizomida: Hubbardiidae). Zoologia (Curitiba) 2016. [DOI: 10.1590/s1984-4689zool-20150195] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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16
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Moreno-Ruiz P, Arluzea J, Silván U, Díez-Torre A, Andrade R, Bonilla Z, Díaz-Núñez M, Silió M, Aréchaga J. Testis peritubular myoid cells increase their motility and express matrix-metalloproteinase 9 (MMP-9) after interaction with embryonal carcinoma cells. Andrology 2015; 4:111-20. [PMID: 26711538 DOI: 10.1111/andr.12140] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2015] [Revised: 10/15/2015] [Accepted: 10/28/2015] [Indexed: 11/29/2022]
Abstract
Today cancer research studies have highlighted the role of the cancer-stroma interaction in the regulation of invasive processes. However, very little is known about cell-to-cell relationships between germinal cancer cells and the somatic ones belong to their close environment, particularly at early invasion stages. Here, we have studied the potential role of the seminiferous peritubular myoid cells (PTCs), as potential part of the reactive stroma, like tumor myofibroblast, in the progression of embryonal carcinoma (EC). To this end, we show results on the in vitro interactions between F9 murine embryonal carcinoma cells (EC cells) and primary cultures of murine PTCs, using contact-dependent and contact-independent 2D co-cultures. In these circumstances, when EC cells interact with PTCs they change their migratory behavior and matrix-metalloproteinase 9 (MMP-9) was up-regulated in PTCs. Additionally, among a variety of cytokines implicated in tumor-stroma cross-talk, we have examined in more detail the influence of tumor necrosis factor alpha (TNF-α). In this regard, it was observed that this cytokine induced a MMP-9 secretion by PTCs in a pattern dependent on its concentration, whereas does not increase the migration capacity of cancer cells. All together, our results provide evidence for a role played by peritubular myoid cells and cancer-cell secreted TNF- α for a change in the tumor microenvironment during the early stages of EC progression.
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Affiliation(s)
- P Moreno-Ruiz
- Laboratory of Stem Cell, Development and Cancer, Department of Cell Biology & Histology, Faculty of Medicine & Dentistry, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain
| | - J Arluzea
- Laboratory of Stem Cell, Development and Cancer, Department of Cell Biology & Histology, Faculty of Medicine & Dentistry, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain.,Analytical & High Resolution Biomedical Microscopy Core Facility, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain
| | - U Silván
- ETH Zürich, Institute for Biomechanics, Zürich, Switzerland.,Balgrist University Hospital, University of Zürich, Zürich, Switzerland
| | - A Díez-Torre
- Analytical & High Resolution Biomedical Microscopy Core Facility, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain
| | - R Andrade
- Analytical & High Resolution Biomedical Microscopy Core Facility, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain
| | - Z Bonilla
- Laboratory of Stem Cell, Development and Cancer, Department of Cell Biology & Histology, Faculty of Medicine & Dentistry, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain
| | - M Díaz-Núñez
- Laboratory of Stem Cell, Development and Cancer, Department of Cell Biology & Histology, Faculty of Medicine & Dentistry, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain
| | - M Silió
- Laboratory of Stem Cell, Development and Cancer, Department of Cell Biology & Histology, Faculty of Medicine & Dentistry, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain
| | - J Aréchaga
- Laboratory of Stem Cell, Development and Cancer, Department of Cell Biology & Histology, Faculty of Medicine & Dentistry, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain.,Analytical & High Resolution Biomedical Microscopy Core Facility, University of the Basque Country (UPV/EHU), Leioa, Vizcaya, Spain
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17
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Freitas SR, Vaz JR, Bruno PM, Andrade R, Mil-Homens P. Stretching Effects: High-intensity & Moderate-duration vs. Low-intensity & Long-duration. Int J Sports Med 2015; 37:239-44. [PMID: 26701828 DOI: 10.1055/s-0035-1548946] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
This study examined whether a high-intensity, moderate-duration bout of stretching would produce the same acute effects as a low-intensity, long-duration bout of stretching. 17 volunteers performed 2 knee-flexor stretching protocols: a high-intensity stretch (i. e., 100% of maximum tolerable passive torque) with a moderate duration (243.5 ± 69.5-s); and a low-intensity stretch (50% of tolerable passive torque) with a long duration (900-s). Passive torque at a given sub-maximal angle, peak passive torque, maximal range of motion (ROM), and muscle activity were assessed before and after each stretching protocol (at intervals of 1, 30 and 60 min). The maximal ROM and tolerable passive torque increased for all time points following the high-intensity stretching (p<0.05), but not after the low-intensity protocol (p>0.05). 1 min post-stretching, the passive torque decreased in both protocols, but to a greater extent in the low-intensity protocol. 30 min post-test, torque returned to baseline for the low-intensity protocol and had increased above the baseline for the high-intensity stretches. The following can be concluded: 1) High-intensity stretching increases the maximal ROM and peak passive torque compared to low-intensity stretching; 2) low-intensity, long-duration stretching is the best way to acutely decrease passive torque; and 3) high-intensity, moderate-duration stretching increases passive torque above the baseline 30 min after stretching.
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Affiliation(s)
- S R Freitas
- Faculdade de Motricidade Humana - Universidade de Lisboa, Desporto e Saúde, Cruz Quebrada, Portugal
| | - J R Vaz
- Faculdade de Motricidade Humana, Universidade de Lisboa, Laboratory of Motor Behavior, Lisboa, Portugal
| | - P M Bruno
- Faculdade de Motricidade Humana - Universidade de Lisboa, Desporto e Saúde, Cruz Quebrada, Portugal
| | - R Andrade
- Faculdade de Motricidade Humana - Universidade de Lisboa, Desporto e Saúde, Cruz Quebrada, Portugal
| | - P Mil-Homens
- Faculdade de Motricidade Humana - Universidade de Lisboa, Desporto e Saúde, Cruz Quebrada, Portugal
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Andrade R, Costa D, Bispo S, Ramos C, Reis P, Chaves O, Xavier C, Proietti F, Correia MI, Friche A, Caiaffa W. Typology of Families Living in Urban areas and Obesity: One Family does not Fit all. Int J Epidemiol 2015. [DOI: 10.1093/ije/dyv096.378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Torres M, Andrade R, Lopez R, Barrera L, Ospina N, Vasquez L, Roa D. 2040 Impact of amplified RAS mutational status in Colombian patients with colorectal cancer: Analysis of 1321 cases. Eur J Cancer 2015. [DOI: 10.1016/s0959-8049(16)30963-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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21
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Huang R, Silva J, Huntington BA, Patz J, Andrade R, Harris PJ, Yin K, Cox M, Bonnecaze RT, Maia JM. Co-Extrusion Layer Multiplication of Rheologically Mismatched Polymers: A Novel Processing Route. INT POLYM PROC 2015. [DOI: 10.3139/217.2955] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Abstract
Co-extruded films with up to 65 layers of two rheologically mismatched polymer systems – polystyrene/poly(methylmethacrylate) (PS/PMMA) and hard/soft thermoplastic polyurethanes (TPUs) – were successfully produced using a combination of a 9-layer feedblock, low-pressure drop multiplier dies, and external lubricants. Formation of viscoelastic instabilities was studied using a custom visualization and by finite element method (FEM) simulations of a standard multiplier. The results showed that the flow inside the standard multiplier die is highly non-uniform, with severe gradients in shear and normal stresses and viscous encapsulation occurring mainly in the initial multiplication stages where there is enough material available in the low-viscosity layers to proceed with the encapsulation. To mitigate layer degradation the standard 2- or 3-layer feedblock was replaced with a 9-layer one, thereby decreasing the thickness of each layer at the end of the feedblock. Also, subsequent layering was performed using a low flow resistance die. This new multiplier die yields a more uniform flow profile and imparts a more homogeneous thermo-mechanical history on the melt which results in an improved layer stability. Simulations showed that in the standard die the second normal-stress difference (N2) responsible for elastic instabilities at the edges of the die are very high. These can be reduced by inducing slip at the wall resulting in be much improved layer uniformity and stability. This was accomplished experimentally via the use of external lubricants, and the resulting layered structure was indeed much better than was possible to achieve with the conventional multiplier dies.
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Affiliation(s)
- R. Huang
- Department of Macromolecular Science and Engineering , CLiPS – NSF Center for Layered Polymeric Systems, Case Western Reserve University, Cleveland OH , USA
| | - J. Silva
- Department of Macromolecular Science and Engineering , CLiPS – NSF Center for Layered Polymeric Systems, Case Western Reserve University, Cleveland OH , USA
| | - B. A. Huntington
- Department of Chemical Engineering , University of Texas at Austin, Austin TX , USA
| | - J. Patz
- Department of Macromolecular Science and Engineering , CLiPS – NSF Center for Layered Polymeric Systems, Case Western Reserve University, Cleveland OH , USA
| | - R. Andrade
- Department of Macromolecular Science and Engineering , CLiPS – NSF Center for Layered Polymeric Systems, Case Western Reserve University, Cleveland OH , USA
| | - P. J. Harris
- Department of Macromolecular Science and Engineering , CLiPS – NSF Center for Layered Polymeric Systems, Case Western Reserve University, Cleveland OH , USA
| | - K. Yin
- Department of Macromolecular Science and Engineering , CLiPS – NSF Center for Layered Polymeric Systems, Case Western Reserve University, Cleveland OH , USA
| | - M. Cox
- Lubrizol Advanced Materials Inc. , Cleveland OH , USA
| | - R. T. Bonnecaze
- Department of Chemical Engineering , University of Texas at Austin, Austin TX , USA
| | - J. M. Maia
- Department of Macromolecular Science and Engineering , CLiPS – NSF Center for Layered Polymeric Systems, Case Western Reserve University, Cleveland OH , USA
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Andrade R, Skurtys O, Osorio F. Drop impact of gelatin coating formulated with cellulose nanofibers on banana and eggplant epicarps. Lebensm Wiss Technol 2015. [DOI: 10.1016/j.lwt.2014.12.035] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Andrade R, Ferrit M, Martínez F, Domingues E, Hernández MA. CP-162 Evaluation of benzodiazepine use in HIV-positive patients. Eur J Hosp Pharm 2015. [DOI: 10.1136/ejhpharm-2015-000639.155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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Guridi A, Diederich AK, Aguila-Arcos S, Garcia-Moreno M, Blasi R, Broszat M, Schmieder W, Clauss-Lendzian E, Sakinc-Gueler T, Andrade R, Alkorta I, Meyer C, Landau U, Grohmann E. New antimicrobial contact catalyst killing antibiotic resistant clinical and waterborne pathogens. Mater Sci Eng C Mater Biol Appl 2015; 50:1-11. [PMID: 25746238 DOI: 10.1016/j.msec.2015.01.080] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Revised: 12/21/2014] [Accepted: 01/24/2015] [Indexed: 12/19/2022]
Abstract
Microbial growth on medical and technical devices is a big health issue, particularly when microorganisms aggregate to form biofilms. Moreover, the occurrence of antibiotic-resistant bacteria in the clinical environment is dramatically growing, making treatment of bacterial infections very challenging. In search of an alternative, we studied a novel antimicrobial surface coating based on micro galvanic elements formed by silver and ruthenium with surface catalytic properties. The antimicrobial coating efficiently inhibited the growth of the nosocomial pathogens Staphylococcus aureus, Staphylococcus epidermidis, Enterococcus faecalis and Enterococcus faecium as demonstrated by the growth inhibition on agar surface and in biofilms of antibiotic resistant clinical E. faecalis, E. faecium, and S. aureus isolates. It also strongly reduced the growth of Legionella in a drinking water pipeline and of Escherichia coli in urine. We postulate a mode of action of the antimicrobial material, which is independent of the release of silver ions. Thus, the novel antimicrobial coating could represent an alternative to combat microbial growth avoiding the toxic side effects of high levels of silver ions on eukaryotic cells.
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Affiliation(s)
- A Guridi
- Biophysics Unit (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, 48940 Leioa, Spain
| | - A-K Diederich
- University Medical Center Freiburg, Division of Infectious Diseases, Hugstetter Strasse 55, 79106 Freiburg, Germany; Biology II, Microbiology, Albert-Ludwigs-University Freiburg, Schänzlestrasse 1, 79104 Freiburg, Germany
| | - S Aguila-Arcos
- Biophysics Unit (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, 48940 Leioa, Spain
| | - M Garcia-Moreno
- Biophysics Unit (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, 48940 Leioa, Spain
| | - R Blasi
- University Medical Center Freiburg, Division of Infectious Diseases, Hugstetter Strasse 55, 79106 Freiburg, Germany; Biology II, Microbiology, Albert-Ludwigs-University Freiburg, Schänzlestrasse 1, 79104 Freiburg, Germany
| | - M Broszat
- University Medical Center Freiburg, Division of Infectious Diseases, Hugstetter Strasse 55, 79106 Freiburg, Germany; Biology II, Microbiology, Albert-Ludwigs-University Freiburg, Schänzlestrasse 1, 79104 Freiburg, Germany
| | - W Schmieder
- Biology II, Microbiology, Albert-Ludwigs-University Freiburg, Schänzlestrasse 1, 79104 Freiburg, Germany
| | - E Clauss-Lendzian
- Biology II, Microbiology, Albert-Ludwigs-University Freiburg, Schänzlestrasse 1, 79104 Freiburg, Germany
| | - T Sakinc-Gueler
- University Medical Center Freiburg, Division of Infectious Diseases, Hugstetter Strasse 55, 79106 Freiburg, Germany
| | - R Andrade
- Advanced Research Facilities (SGIker), University of the Basque Country, UPV/EHU, 48940 Leioa, Spain
| | - I Alkorta
- Biophysics Unit (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, 48940 Leioa, Spain
| | - C Meyer
- Largentec GmbH, Am Waldhaus 32, 14129 Berlin, Germany
| | - U Landau
- Largentec GmbH, Am Waldhaus 32, 14129 Berlin, Germany
| | - E Grohmann
- Biophysics Unit (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, 48940 Leioa, Spain; University Medical Center Freiburg, Division of Infectious Diseases, Hugstetter Strasse 55, 79106 Freiburg, Germany; Biology II, Microbiology, Albert-Ludwigs-University Freiburg, Schänzlestrasse 1, 79104 Freiburg, Germany.
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Andrade R, Skurtys O, Osorio F, Zuluaga R, Gañán P, Castro C. Wettability of gelatin coating formulations containing cellulose nanofibers on banana and eggplant epicarps. Lebensm Wiss Technol 2014. [DOI: 10.1016/j.lwt.2014.02.034] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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26
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Middleton K, Acevedo A, Dietz L, Brandon Z, Andrade R, Wallen G. Yoga and Physical Rehabilitation Medicine: A Research Partnership in Integrative Care. J Yoga Phys Ther 2013; 3. [PMID: 24765541 PMCID: PMC3995350 DOI: 10.4172/2157-7595.1000149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Mind-body interventions, such as yoga, that teach stress management with physical activity may be well suited for investigation in both osteoarthritis and rheumatoid arthritis. In order to be considered as viable care options integrative studies need to offer a comprehensive design and include clinicians familiar with the disease process of the study populations. A review of the literature reveals a dearth of information related to the collaboration between yoga and physical rehabilitation medicine. This article discusses the collaboration with physical rehabilitation medicine to collect relevant pre- and post-intervention measures for an on-going pilot acceptability/feasibility yoga study for minority patients with osteoarthritis or rheumatoid arthritis. An interdisciplinary clinical research team selected psychosocial and physical measures for a community sample of bilingual minority patients, not typically identified as practicing yoga. Sixteen female adults aged 40–63 years (mean =51) completed baseline physical assessments using single leg stance, functional reach test, time up and go test, timed up from the floor test and the Disabilities of the Arm, Shoulder and Hand measures. Baseline values show an average level of functional ability prior to beginning the intervention. Preliminary results indicate some improvement; however, selected measures may not have the sensitivity and specificity needed to identify significant change. In this study, combining interdisciplinary perspectives enhanced the quality of the research study design. The experience of this interdisciplinary clinical research team opens the discussion for future collaborations.
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Affiliation(s)
- Kr Middleton
- National Institutes of Health (NIH), Clinical Center, 10 Center Drive, Room 2B02E, Bethesda, USA
| | - At Acevedo
- NIH/ Rehabilitation Medicine Department, 10 Center Drive, Bethesda, USA
| | - L Dietz
- NIH/ Rehabilitation Medicine Department, 10 Center Drive, Bethesda, USA
| | - Z Brandon
- NIH/ Rehabilitation Medicine Department, 10 Center Drive, Bethesda, USA
| | - R Andrade
- National Institutes of Health (NIH), Clinical Center, 10 Center Drive, Room 2B02E, Bethesda, USA
| | - Gr Wallen
- National Institutes of Health (NIH), Clinical Center, 10 Center Drive, Room 2B02E, Bethesda, USA
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Santos N, Veiga P, Andrade R. [Importance of history and physical examination for the care of nurses]. Rev Bras Enferm 2011; 64:355-8. [PMID: 21755222 DOI: 10.1590/s0034-71672011000200021] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2009] [Accepted: 10/17/2010] [Indexed: 11/22/2022] Open
Abstract
The history and physical examination are part of data collection of the Nursing Process. Its implementation is aimed at individualized care, holistic, humane and scientific foundation. The literature review was carried out in indexed databases as LILACS and SciELO, books and journals available in local libraries as published between the years 2000 to 2009. The aim is to describe the importance of clinical history and physical examination in the care provided by nurses. The results of this research will enable nursing students and health professionals can better understand the importance of history taking and physical examination to their professional practice, implement properly all stages of NAS and arouse interest in research on this topic.
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Gallego M, Robles M, Palacios R, Ruiz J, Nuño E, Márquez M, Andrade R, Santos J. Impact of Acute Hepatitis A Virus (HAV) Infection on HIV Viral Load in HIV-Infected Patients and Influence of HIV Infection on Acute HAV Infection. ACTA ACUST UNITED AC 2011; 10:40-2. [DOI: 10.1177/1545109710385692] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Purpose: To assess the effect of hepatitis A virus (HAV) infection on HIV viral load (VL) and the influence of HIV on the clinical expression of HAV infection. Methods: Single-center study of 23 HIV-positive patients and 41 HIV-negative patients diagnosed with acute HAV infection during 2008-2009. The impact of HAV on HIV VL was defined as an increase of >0.5 log10 during the event, or a detectable VL for those previously suppressed patients. Results: The impact of acute HAV on VL was observed in 37.5% patients. HIV-negative patients were younger (27 vs 34 years, P < .0001), and serum transaminases levels normalized earlier than in the HIV-positive patients (121 vs 178 days, P < .05). Conclusions: Acute HAV infection may have an impact on HIV VL. The interactions between the 2 viruses may not only prolong the HAV viremia, with a potential increase in the transmission of infection, but the impact on HIV may increase the risk of HIV transmission. Studies with higher sample size are needed to confirm our results.
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Affiliation(s)
- M. Gallego
- Unidad de Gestión Clínica de Enfermedades Infecciosas, Hospital Universitario Virgen de la Victoria, Málaga, Spain
| | - M. Robles
- Unidad de Gestión Clínica de Enfermedades Infecciosas, Hospital Universitario Virgen de la Victoria, Málaga, Spain, Servicio de Digestivo, Hospital Universitario Virgen de la Victoria, Málaga, Spain
| | - R. Palacios
- Unidad de Gestión Clínica de Enfermedades Infecciosas, Hospital Universitario Virgen de la Victoria, Málaga, Spain
| | - J. Ruiz
- Unidad de Gestión Clínica de Enfermedades Infecciosas, Hospital Universitario Virgen de la Victoria, Málaga, Spain
| | - E. Nuño
- Unidad de Gestión Clínica de Enfermedades Infecciosas, Hospital Universitario Virgen de la Victoria, Málaga, Spain
| | - M. Márquez
- Unidad de Gestión Clínica de Enfermedades Infecciosas, Hospital Universitario Virgen de la Victoria, Málaga, Spain
| | - R. Andrade
- Unidad de Gestión Clínica de Enfermedades Infecciosas, Hospital Universitario Virgen de la Victoria, Málaga, Spain
| | - J. Santos
- Unidad de Gestión Clínica de Enfermedades Infecciosas, Hospital Universitario Virgen de la Victoria, Málaga, Spain,
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Andrade R, Araújo RC, Tucci HT, Martins J, Oliveira AS. Coactivation of the shoulder and arm muscles during closed kinetic chain exercises on an unstable surface. Singapore Med J 2011; 52:35-41. [PMID: 21298239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
INTRODUCTION The purpose of this study was to compare the electromyography index of muscle coactivation of the following muscle pairs: posterior deltoid and pectoralis major (PD/PM); triceps brachii and biceps brachii (TB/BB); and serratus anterior and upper trapezius (SA/UT) during three different closed kinetic chain exercises (wall-press, bench-press and push-up) on an unstable surface at the maximal load. METHODS A total of 20 healthy sedentary men participated in the study. Integral linear values were obtained from three sustained contractions of six seconds each for the three proposed exercises. Mean coactivation index values were compared using the mixed-effects linear model, with a five percent significance level. RESULTS Electromyography indexes of muscle coactivation showed significant differences for the PD/PM and TB/BB muscle pairs. No differences were found between exercises for the SA/UT muscle pair. CONCLUSION Our results seem to differ from those of previous studies, which reported that the similarity in exercises performed is responsible for the comparable muscle activation levels.
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Affiliation(s)
- R Andrade
- Ribeirão Preto Medical School, University of São Paulo, Av Bandeirantes, 3900 Monte Alegre, Ribeirão Preto, São Paulo 14390-900, Brazil.
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Fuentes M, Andrade R, Peláez B, Barreales L, Del Prado N, Cano S, Fereres J. P14.15 Effectiveness of an intervention to improve the compliance of hand hygiene recommendations at hospital setting. J Hosp Infect 2010. [DOI: 10.1016/s0195-6701(10)60165-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Sebastián V, Peláez B, Barreales L, Andrade R, Fernández C, Fereres J. P08.19 Comparative evaluation of surgical cycle performed in washer-disinfectors by visual inspection versus total protein quantification. J Hosp Infect 2010. [DOI: 10.1016/s0195-6701(10)60091-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Sebastián V, Andrade R, Barreales L, Peláez B, Fernández C, Fereres J. P08.18 Comparative evaluation of anaesthesia cleaning cycle performed in washer-disinfectors by visual inspection versus total protein quantification. J Hosp Infect 2010. [DOI: 10.1016/s0195-6701(10)60090-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Andrade R, García-Espinosa A, Machado-Rojas A, de la Cruz-Turruelles A. [An atypical progression of rolandic epilepsy: the value of single-photon emission computerised tomography co-registered to magnetic resonance imaging]. Rev Neurol 2009; 49:639-644. [PMID: 20013716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
INTRODUCTION The complicated forms of rolandic epilepsy progress with a continuous spike-wave pattern in slow-wave sleep. Experiments conducted in cats suggest that this pattern can only appear if there is bilateral thalamic insult. AIM. To determine whether thalamic hypoperfusion is associated with the complicated variants of rolandic epilepsy. PATIENTS AND METHODS A group of 24 children were studied over a period of six years following their first epileptic seizure. During the follow-up an interictal magnetic resonance scan and single-photon emission computerised tomography (SPECT) were performed. Results were examined to ascertain whether there were asymmetries in the distribution of cerebral blood flow through structures, using parametric statistical maps. The brain SPECT was performed when progression to atypical benign partial epilepsy in infancy was diagnosed and in typical forms of rolandic epilepsy when there was some mild neuropsychological deficit that led the specialist to suspect the existence of a focal cortical lesion. RESULTS Bilateral thalamic hypoperfusion was found in all patients diagnosed with atypical benign partial epilepsy in infancy, which was correlated with the presence of continuous spike-waves during the slow-wave phase of non-REM sleep. CONCLUSIONS Bilateral thalamic hypoperfusion seems to be a necessary condition for the atypical progression of rolandic epilepsy.
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Affiliation(s)
- R Andrade
- Sección de Epilepsia. Instituto Nacional Neurologia y Neurocirugia de Cuba, CP 10400 Ciudad de la Habana, Cuba.
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Takahashi J, Tavares BM, Qian WL, Andrade R, Grassi F, Hama Y, Kodama T, Xu N. Topology studies of hydrodynamics using two-particle correlation analysis. Phys Rev Lett 2009; 103:242301. [PMID: 20366198 DOI: 10.1103/physrevlett.103.242301] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2009] [Indexed: 05/29/2023]
Abstract
The effects of fluctuating initial conditions are studied in the context of relativistic heavy ion collisions where a rapidly evolving system is formed. Two-particle correlation analysis is applied to events generated with the NEXSPHERIO hydrodynamic code, starting with fluctuating nonsmooth initial conditions (IC). The results show that the nonsmoothness in the IC survives the hydroevolution and can be seen as topological features of the angular correlation function of the particles emerging from the evolving system. A long range correlation is observed in the longitudinal direction and in the azimuthal direction a double peak structure is observed in the opposite direction to the trigger particle. This analysis provides clear evidence that these are signatures of the combined effect of tubular structures present in the IC and the proceeding collective dynamics of the hot and dense medium.
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Affiliation(s)
- J Takahashi
- Universidade Estadual de Campinas, São Paulo, 13083-970, Brazil.
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Andrade R, García-Espinosa A, Machado-Rojas A, García-González ME, Trápaga-Quincoses O, Morales-Chacón LM. [A prospective, open, controlled and randomised study of clobazam versus carbamazepine in patients with frequent episodes of Rolandic epilepsy]. Rev Neurol 2009; 49:581-586. [PMID: 19921623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
INTRODUCTION To date no controlled, randomised studies with flexible dose regimens have been conducted in children with rolandic epilepsy, and therapy is therefore still empirical. AIM To evaluate the effectiveness and safety of clobazam (CLB) compared with that of carbamazepine (CBZ) in rolandic epilepsy. PATIENTS AND METHODS A prospective, open, controlled and randomised study was carried out to compare CBZ and CLB in children with rolandic epilepsy with a follow-up over a two-year period. A random sample of 45 patients was taken and 38 of them finished the study. A flexible dose regimen was indicated. Control of seizures, academic performance, behaviour, adherence to treatment, parents' degree of satisfaction and side effect profiles were all evaluated. RESULTS Both drugs were equally effective at controlling seizures (94.1% of patients with CLB and 100% of those with CBZ were free of seizures on ending the study; p = 0.26). CLB controlled seizures earlier (33.3 +/- 45 days versus 48.2 +/- 72.3; p < 0.05) and had fewer side effects than CBZ (side effects appeared in three patients with CLB and in eight of those on CBZ; p = 0). In two of the patients taking CBZ, the seizures got worse and a series of cognitive-behavioural complications also appeared. CONCLUSIONS CBZ is an effective drug in rolandic epilepsy, but it may be associated with exacerbation of seizures as well as with cognitive-behavioural impairment. CLB in monotherapy seems to be an effective and better tolerated drug in this kind of epilepsy.
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Affiliation(s)
- R Andrade
- Instituto Nacional Neurologia y Neurocirugia de Cuba, Ciudad de la Habana, Cuba.
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Martínez L, Andrade R, Birgin EG, Martínez JM. PACKMOL: a package for building initial configurations for molecular dynamics simulations. J Comput Chem 2009; 30:2157-64. [PMID: 19229944 DOI: 10.1002/jcc.21224] [Citation(s) in RCA: 3892] [Impact Index Per Article: 259.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Adequate initial configurations for molecular dynamics simulations consist of arrangements of molecules distributed in space in such a way to approximately represent the system's overall structure. In order that the simulations are not disrupted by large van der Waals repulsive interactions, atoms from different molecules must keep safe pairwise distances. Obtaining such a molecular arrangement can be considered a packing problem: Each type molecule must satisfy spatial constraints related to the geometry of the system, and the distance between atoms of different molecules must be greater than some specified tolerance. We have developed a code able to pack millions of atoms, grouped in arbitrarily complex molecules, inside a variety of three-dimensional regions. The regions may be intersections of spheres, ellipses, cylinders, planes, or boxes. The user must provide only the structure of one molecule of each type and the geometrical constraints that each type of molecule must satisfy. Building complex mixtures, interfaces, solvating biomolecules in water, other solvents, or mixtures of solvents, is straightforward. In addition, different atoms belonging to the same molecule may also be restricted to different spatial regions, in such a way that more ordered molecular arrangements can be built, as micelles, lipid double-layers, etc. The packing time for state-of-the-art molecular dynamics systems varies from a few seconds to a few minutes in a personal computer. The input files are simple and currently compatible with PDB, Tinker, Molden, or Moldy coordinate files. The package is distributed as free software and can be downloaded from http://www.ime.unicamp.br/~martinez/packmol/.
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Affiliation(s)
- L Martínez
- Department of Physical Chemistry, IQ-UNICAMP, University of Campinas, Brazil.
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Silván U, Arlucea J, Andrade R, Díez-Torre A, Silió M, Konerding MA, Aréchaga J. Angiogenesis and vascular network of teratocarcinoma from embryonic stem cell transplant into seminiferous tubules. Br J Cancer 2009; 101:64-70. [PMID: 19513074 PMCID: PMC2713705 DOI: 10.1038/sj.bjc.6605125] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2009] [Revised: 05/06/2009] [Accepted: 05/11/2009] [Indexed: 12/03/2022] Open
Abstract
BACKGROUND Carcinoma in situ (CIS) of the testis is considered to be a precancerous germinal cell lesion, but the precise cellular and molecular mechanisms underlying transformation of CIS into invasive pluripotent cancer cells remain to be elucidated. Moreover, a satisfactory animal model for the experimental study of germinal tumours has not been developed to date. METHODS We have developed a tumour model that involves the microinjection of green fluorescent protein-labelled embryonic stem (ES) cells (which are functionally equivalent to CIS cells) into syngenic mouse seminiferous tubules, a unique cell microenvironment in which germinal cells mature and CIS arise. To characterise the vascularisation of teratocarcinomas, which arise after cell transplant, we used immunohistochemistry, together with a qualitative and quantitative analysis of scanning electron microscopy images of corrosion casting samples. RESULTS Embryonic stem cells transplanted into seminiferous tubules did not differentiate into germinal cells, but rather they behaved as invasive embryonal carcinoma (EC) stem cells. The vascular pattern of the experimental teratocarcinomas showed a highly disorganised architecture, and some of the neoplastic capillaries were derived, at least in part, from the original transplanted ES cells. CONCLUSION The transplantation of pluripotent ES cells into seminiferous tubules efficiently recapitulates the early stages of development of teratocarcinomas. Consequently, this method constitutes a novel in vivo model to study the mechanisms of invasion and progression of experimental germinal tumours.
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Affiliation(s)
- U Silván
- Laboratory of Stem Cells, Development and Cancer, Department of Cell Biology and Histology, Leioa, Vizcaya, Spain
| | - J Arlucea
- Laboratory of Stem Cells, Development and Cancer, Department of Cell Biology and Histology, Leioa, Vizcaya, Spain
- Biomedical Analytical and High Resolution Microscopy Facility, University of the Basque Country, E-48940 Leioa, Vizcaya, Spain
| | - R Andrade
- Laboratory of Stem Cells, Development and Cancer, Department of Cell Biology and Histology, Leioa, Vizcaya, Spain
- Biomedical Analytical and High Resolution Microscopy Facility, University of the Basque Country, E-48940 Leioa, Vizcaya, Spain
| | - A Díez-Torre
- Laboratory of Stem Cells, Development and Cancer, Department of Cell Biology and Histology, Leioa, Vizcaya, Spain
- Biomedical Analytical and High Resolution Microscopy Facility, University of the Basque Country, E-48940 Leioa, Vizcaya, Spain
| | - M Silió
- Laboratory of Stem Cells, Development and Cancer, Department of Cell Biology and Histology, Leioa, Vizcaya, Spain
| | - M A Konerding
- Institute of Anatomy, Johannes Gutenberg University, D-55099 Mainz, Germany
| | - J Aréchaga
- Laboratory of Stem Cells, Development and Cancer, Department of Cell Biology and Histology, Leioa, Vizcaya, Spain
- Biomedical Analytical and High Resolution Microscopy Facility, University of the Basque Country, E-48940 Leioa, Vizcaya, Spain
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Michalski D, Andrade R, Mutaf Y, Heron D, Huq M. SU-FF-J-91: Model-Based Esophageal Motion and Margin Determination. Med Phys 2009. [DOI: 10.1118/1.3181383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Michalski D, Andrade R, Mutaf Y, Heron D, Huq M. SU-FF-I-97: Comparison of End of Exhalation (EE) 4DCT Phase and Breadth-Hold Scans. Med Phys 2009. [DOI: 10.1118/1.3181217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Andrade R, Sanchez ML, Alarcón GS, Fessler BJ, Fernández M, Bertoli AM, Apte M, Vilá LM, Arango AM, Reveille JD. Adverse pregnancy outcomes in women with systemic lupus erythematosus from a multiethnic US cohort: LUMINA (LVI) [corrected]. Clin Exp Rheumatol 2008; 26:268-274. [PMID: 18565248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
OBJECTIVE To study the factors associated with an adverse pregnancy outcome in women with systemic lupus erythematosus (SLE). METHODS SLE women from LUMINA of Hispanic, African American and Caucasian ethnicity were studied. Adverse pregnancy outcome was a miscarriage or abortion (<20 weeks), a stillbirth (> or = 20) and/or a moderate to severe preterm-baby (<34 weeks); good outcome was either a mild preterm-baby (> or = 34 weeks) or a full-term baby [C-section or vaginal delivery (38-42 weeks)]. Pregnancies occurring after SLE diagnosis (TD) were included; pregnancy outcome was the unit of analyses. The relationship between selected variables and pregnancy outcomes was examined by univariable and multivariable analyses. RESULTS Adverse outcomes occurred in 63.7% of 102 pregnancies. In the univariable analyses, Texan Hispanic and African American ethnicities, fewer years of education, higher number of ACR criteria, renal involvement, glucocorticoid exposure and the maximum dose of glucocorticoids used prior to the pregnancy outcome were associated with an adverse pregnancy outcome. Renal involvement was independently associated with an adverse pregnancy outcome [Odds ratio (OR)=5.219 (95% Confidence Interval (CI) 1.416-19.239, p=0.0131] as were the maximum dose of glucocorticoids used prior to the pregnancy outcome (OR=1.028; CI:1.002-1.054; p=0.0315) and fewer years of education (OR=1.204; CI:1.006-1.472; p=0.0437). Ethnicity was not retained in the multivariable model. CONCLUSION Renal involvement, the maximum dose of glucocorticoids used prior to pregnancy and fewer years of education were associated with adverse pregnancy outcomes. These data have implications for the management of women with lupus planning to become pregnant.
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Affiliation(s)
- R Andrade
- Department of Medicine (Division of Clinical Immunology and Rheumatology), School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, USA
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Castro-Rodriguez JA, Mallol J, Rodriguez J, Auger F, Andrade R. Risk factors for X-ray pneumonia in the first year of life and its relation to wheezing: a longitudinal study in a socioeconomic disadvantaged population. Allergol Immunopathol (Madr) 2008; 36:3-8. [PMID: 18261426 DOI: 10.1157/13115664] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
BACKGROUND Although thousands of infants under the age of 12 months die each year from pneumonia in Latin America, little is known regarding the true occurrence of pneumonia, wheezing and other related respiratory illnesses in this age group. METHODS AND RESULTS In order to describe the prevalence and risk factors for radiologically confirmed pneumonia during the first year of life, a birth-cohort (n = 188) of infants born in a low-income area in Santiago, Chile was followed up monthly. RESULTS The prevalence of pneumonia during the first year of life was 13.3 % and there were no fatal events. Exclusive breastfeeding during the first 4 months of life was more prevalent in the non pneumonia group; conversely, wheezing episodes during 0-3 and 3-6 months of age, and hospitalization due to lower respiratory infection during 3-6 and 9-12 months of age were more prevalent in the pneumonia group. After a logistic multivariate analysis, the only risk factor that remained related with pneumonia was wheezing during the first 3 months of life (adjusted OR: 7.7, 95 CI: 1.32-44.92, p = 0.024); while breastfeeding during the first 4 months was an independent protective factor for pneumonia (adjusted OR: 0.11, 95 CI: 0.03-0.44, p = 0.002). CONCLUSION The significant protective effect of exclusive breast feeding against pneumonia in this cohort and the evident role of recurrent wheezing as risk factor for pneumonia during the first year of life support the implementation or reinforcement of public policies encouraging exclusive breastfeeding and an adequate management of wheezing since the first months of life.
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Michalski D, Andrade R, Heron D, Huq M. SU-FF-J-85: 4DCT-Based Study of Tumor and Lung Kinematics During Respiratory Cycle. Med Phys 2007. [DOI: 10.1118/1.2760590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Andrade R, García-Espinosa A, de la Cruz-Turruelles A, Machado-Rojas A, Arteche-Prior M, Díaz-Pedraza A. [Unilateral neglect, transient cognitive impairment and intercritical activity in Rolandic epilepsy]. Rev Neurol 2007; 44:537-40. [PMID: 17492612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
INTRODUCTION Benign focal epilepsy in infancy with centro-temporal paroxysms is a frequent form of epilepsy within this group of epilepsies. Despite its relative benignity, however, it may be accompanied by neuropsychological deficits and therefore constitutes a suitable in vivo model for studying how the brain functions when processing information. CASE REPORT We report the case of a 7-year-old child who began with this type of epilepsy by manifesting focal seizures during the early stages of sleep and who, with the absence of any continuous spike-wave activity in non-REM sleep, presented transient unilateral neglect syndrome on the right-hand side related with electroencephalographic intercritical activity. CONCLUSIONS The neuropsychological manifestations in this type of epilepsy can be due to intercritical paroxysmal activity. The clinical features depend on where the paroxysms are located and in which direction they spread. A dysfunction of the physiological neuronal synchrony among the neuronal networks that are necessary for thinking processes could be the cause of this disorder.
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Affiliation(s)
- R Andrade
- Instituto Nacional de Neurologia y Neurocirugia, La Habana, Cuba.
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Salmerón J, Diago M, Andrade R, Pérez R, Solá R, Romero M, de la Mata M, Granados R, Ruiz-Extremera A, Muñoz de Rueda P. Induction doses of interferon-alpha-2a in combination with ribavirin and/or amantadine for the treatment of chronic hepatitis C in non-responders to interferon monotherapy: a randomized trial. J Viral Hepat 2007; 14:89-95. [PMID: 17244248 DOI: 10.1111/j.1365-2893.2006.00771.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/09/2022]
Abstract
The benefit of the triple therapy (interferon + amantadine + ribavirim) is still unknown. The efficacy of induction doses of interferon-alpha-2a monotherapy or in combination with ribavirin and/or amantadine was evaluated in interferon non-responders with chronic hepatitis C. A total of 378 patients were randomized. All the groups received the same doses and duration of interferon-alpha-2a: (i) interferon 9 MUI/day for 4 weeks and then 3 MUI/3 t.i.w. for 44 weeks (n = 53); (ii) interferon in combination with amantadine 100 mg twice daily for 48 weeks (n = 111); (iii) interferon in combination with ribavirin 1000-1200 mg (n = 106); (iv) interferon in combination with amantadine and ribavirin (n = 108). Baseline parameters were similar in the four groups. Sustained virological and biochemical responses were 13%, 6%, 18% and 22% respectively. No significant differences were found between double ribavirin arm vs triple therapy, but the difference was significant between interferon-amantadine (P = 0.008) and triple therapy (P = 0.0005). Hence, the induction doses of interferon in combination with ribavirin or ribavirin plus amantadine showed encouraging results in patients with chronic hepatitis C who were resistant to interferon. However, triple therapy is not superior to double.
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Affiliation(s)
- J Salmerón
- Gastroenterology Unit, Hospital Universitario San Cecilio, Granada, Spain.
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49
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Andrade R, Grassi F, Hama Y, Kodama T, Socolowski O. Examining the necessity to include event-by-event fluctuations in experimental evaluations of elliptical flow. Phys Rev Lett 2006; 97:202302. [PMID: 17155679 DOI: 10.1103/physrevlett.97.202302] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2006] [Indexed: 05/12/2023]
Abstract
Elliptic flow at BNL RHIC is computed event by event with NeXSPheRIO. We show that when symmetry of the particle distribution in relation to the reaction plane is assumed, as usually done in the experimental extraction of elliptic flow, there is a disagreement between the true and reconstructed elliptic flows (15%-30% for eta=0, 30% for p perpendicular=0.5 GeV). We suggest a possible way to take into account the asymmetry and get good agreement between these elliptic flows.
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Affiliation(s)
- R Andrade
- Instituto de Física-Universidade de São Paulo, C.P. 66318, 05315-970 Sao Paulo, Brazil
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50
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Cardoso E, Fukuda T, Pereira J, Seixas J, Miranda R, Rodrigues B, Saback T, Andrade R, Cardoso G, Martinez R, Avena J, Melo A. Clinical and epidemiological profile of multiple sclerosis in a reference center in the State of Bahia, Brazil. Arq Neuro-Psiquiatr 2006; 64:727-30. [PMID: 17057875 DOI: 10.1590/s0004-282x2006000500005] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2006] [Accepted: 06/21/2006] [Indexed: 11/21/2022]
Abstract
Multiple sclerosis (MS) is an autoimmune, demyelinating and degenerative disease that affects the central nervous system. Its prevalence and clinical aspects vary according to the continent considered, being more frequent in Caucasians and young individuals aged 20 to 40 years. Epidemiological data from Brazil show that prevalence is variable, being more frequent in the Southern and Southeastern areas of the country, rather than in the Northern and Northeastern areas. The purpose of this paper is to describe MS clinical and epidemiological features in the State of Bahia, in the Brazilian Northeastern region. Thus, we held a cross-sectional study over the period from February to May, 2005, in the Multiple Sclerosis Patient Support Center ("Núcleo de Apoio aos Pacientes com Esclerose Múltipla") of Bahia, which included all patients with a diagnosis of MS seen over this period of time. A total of 121 patients were investigated, being 80.2% females (female:male ratio=4:1), with higher frequency in mulatto individuals (64%), and the relapsing-remitting type (91.3%). Most patients (68.7%) had mild MS, and blacks were prone to worse prognosis compared to other patients.
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Affiliation(s)
- Eduardo Cardoso
- Divisão de Neurologia e Epidemiologia, Universidade Federal da Bahia, Avenida Magalhães Neto735/902, 41820-011 Salvador, Bahia, Brasil
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