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Griffin CT, Botelho JF, Hanson M, Fabbri M, Smith-Paredes D, Carney RM, Norell MA, Egawa S, Gatesy SM, Rowe TB, Elsey RM, Nesbitt SJ, Bhullar BAS. Author Correction: The developing bird pelvis passes through ancestral dinosaurian conditions. Nature 2023; 623:E19. [PMID: 37964130 DOI: 10.1038/s41586-023-06765-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2023]
Affiliation(s)
- Christopher T Griffin
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
- Department of Geosciences, Virginia Tech, Blacksburg, VA, USA
| | - João F Botelho
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
- Departamento Biología Celular y Molecular, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Michael Hanson
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Matteo Fabbri
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
- Nagaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
| | - Daniel Smith-Paredes
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Ryan M Carney
- Department of Integrative Biology, University of South Florida, Tampa, FL, USA
| | - Mark A Norell
- Division of Vertebrate Paleontology, American Museum of Natural History, New York, NY, USA
| | - Shiro Egawa
- RIKEN Center for Biosystems Dynamics Research, Kobe, Japan
| | - Stephen M Gatesy
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, USA
| | - Timothy B Rowe
- Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, USA
| | - Ruth M Elsey
- Rockefeller Wildlife Refuge, Louisiana Department of Wildlife and Fisheries, Grand Chenier, LA, USA
| | | | - Bhart-Anjan S Bhullar
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA.
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA.
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2
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Tseng ZJ, Garcia-Lara S, Flynn JJ, Holmes E, Rowe TB, Dickson BV. A switch in jaw form-function coupling during the evolution of mammals. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220091. [PMID: 37183899 PMCID: PMC10184249 DOI: 10.1098/rstb.2022.0091] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023] Open
Abstract
The evolutionary shift from a single-element ear, multi-element jaw to a multi-element ear, single-element jaw during the transition to crown mammals marks one of the most dramatic structural transformations in vertebrates. Research on this transformation has focused on mammalian middle-ear evolution, but a mandible comprising only the dentary is equally emblematic of this evolutionary radiation. Here, we show that the remarkably diverse jaw shapes of crown mammals are coupled with surprisingly stereotyped jaw stiffness. This strength-based morphofunctional regime has a genetic basis and allowed mammalian jaws to effectively resist deformation as they radiated into highly disparate forms with markedly distinct diets. The main functional consequences for the mandible of decoupling hearing and mastication were a trade-off between higher jaw stiffness versus decreased mechanical efficiency and speed compared with non-mammals. This fundamental and consequential shift in jaw form-function underpins the ecological and taxonomic diversification of crown mammals. This article is part of the theme issue 'The mammalian skull: development, structure and function'.
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Affiliation(s)
- Z Jack Tseng
- Department of Integrative Biology, University of California, Berkeley, CA 94720, USA
- Museum of Paleontology, University of California, Berkeley, CA 94720, USA
- Division of Paleontology, American Museum of Natural History, New York, NY 10024, USA
| | - Sergio Garcia-Lara
- Department of Integrative Biology, University of California, Berkeley, CA 94720, USA
- Museum of Paleontology, University of California, Berkeley, CA 94720, USA
| | - John J Flynn
- Division of Paleontology, American Museum of Natural History, New York, NY 10024, USA
- Richard Gilder Graduate School, American Museum of Natural History, New York, NY 10024, USA
| | - Emily Holmes
- Department of Integrative Biology, University of California, Berkeley, CA 94720, USA
| | - Timothy B Rowe
- Jackson School of Geological Sciences, University of Texas, Austin, TX 78712, USA
| | - Blake V Dickson
- Department of Evolutionary Anthropology, Duke University, Durham, NC 27708, USA
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3
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Griffin CT, Botelho JF, Hanson M, Fabbri M, Smith-Paredes D, Carney RM, Norell MA, Egawa S, Gatesy SM, Rowe TB, Elsey RM, Nesbitt SJ, Bhullar BAS. The developing bird pelvis passes through ancestral dinosaurian conditions. Nature 2022; 608:346-352. [PMID: 35896745 DOI: 10.1038/s41586-022-04982-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 06/15/2022] [Indexed: 11/08/2022]
Abstract
Living birds (Aves) have bodies substantially modified from the ancestral reptilian condition. The avian pelvis in particular experienced major changes during the transition from early archosaurs to living birds1,2. This stepwise transformation is well documented by an excellent fossil record2-4; however, the ontogenetic alterations that underly it are less well understood. We used embryological imaging techniques to examine the morphogenesis of avian pelvic tissues in three dimensions, allowing direct comparison with the fossil record. Many ancestral dinosaurian features2 (for example, a forward-facing pubis, short ilium and pubic 'boot') are transiently present in the early morphogenesis of birds and arrive at their typical 'avian' form after transitioning through a prenatal developmental sequence that mirrors the phylogenetic sequence of character acquisition. We demonstrate quantitatively that avian pelvic ontogeny parallels the non-avian dinosaur-to-bird transition and provide evidence for phenotypic covariance within the pelvis that is conserved across Archosauria. The presence of ancestral states in avian embryos may stem from this conserved covariant relationship. In sum, our data provide evidence that the avian pelvis, whose early development has been little studied5-7, evolved through terminal addition-a mechanism8-10 whereby new apomorphic states are added to the end of a developmental sequence, resulting in expression8,11 of ancestral character states earlier in that sequence. The phenotypic integration we detected suggests a previously unrecognized mechanism for terminal addition and hints that retention of ancestral states in development is common during evolutionary transitions.
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Affiliation(s)
- Christopher T Griffin
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
- Department of Geosciences, Virginia Tech, Blacksburg, VA, USA
| | - João F Botelho
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
- Departamento Biología Celular y Molecular, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Michael Hanson
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Matteo Fabbri
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
- Nagaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
| | - Daniel Smith-Paredes
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Ryan M Carney
- Department of Integrative Biology, University of South Florida, Tampa, FL, USA
| | - Mark A Norell
- Division of Vertebrate Paleontology, American Museum of Natural History, New York, NY, USA
| | - Shiro Egawa
- RIKEN Center for Biosystems Dynamics Research, Kobe, Japan
| | - Stephen M Gatesy
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, USA
| | - Timothy B Rowe
- Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, USA
| | - Ruth M Elsey
- Rockefeller Wildlife Refuge, Louisiana Department of Wildlife and Fisheries, Grand Chenier, LA, USA
| | | | - Bhart-Anjan S Bhullar
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA.
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA.
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4
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Rowe TB, Stafford TW, Fisher DC, Enghild JJ, Quigg JM, Ketcham RA, Sagebiel JC, Hanna R, Colbert MW. Human Occupation of the North American Colorado Plateau ∼37,000 Years Ago. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.903795] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Calibrating human population dispersals across Earth’s surface is fundamental to assessing rates and timing of anthropogenic impacts and distinguishing ecological phenomena influenced by humans from those that were not. Here, we describe the Hartley mammoth locality, which dates to 38,900–36,250 cal BP by AMS 14C analysis of hydroxyproline from bone collagen. We accept the standard view that elaborate stone technology of the Eurasian Upper Paleolithic was introduced into the Americas by arrival of the Native American clade ∼16,000 cal BP. It follows that if older cultural sites exist in the Americas, they might only be diagnosed using nuanced taphonomic approaches. We employed computed tomography (CT and μCT) and other state-of-the-art methods that had not previously been applied to investigating ancient American sites. This revealed multiple lines of taphonomic evidence suggesting that two mammoths were butchered using expedient lithic and bone technology, along with evidence diagnostic of controlled (domestic) fire. That this may be an ancient cultural site is corroborated by independent genetic evidence of two founding populations for humans in the Americas, which has already raised the possibility of a dispersal into the Americas by people of East Asian ancestry that preceded the Native American clade by millennia. The Hartley mammoth locality thus provides a new deep point of chronologic reference for occupation of the Americas and the attainment by humans of a near-global distribution.
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Frank LR, Rowe TB, Boyer DM, Witmer LM, Galinsky VL. Unveiling the third dimension in morphometry with automated quantitative volumetric computations. Sci Rep 2021; 11:14438. [PMID: 34262066 PMCID: PMC8280169 DOI: 10.1038/s41598-021-93490-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2021] [Accepted: 06/25/2021] [Indexed: 02/06/2023] Open
Abstract
As computed tomography and related technologies have become mainstream tools across a broad range of scientific applications, each new generation of instrumentation produces larger volumes of more-complex 3D data. Lagging behind are step-wise improvements in computational methods to rapidly analyze these new large, complex datasets. Here we describe novel computational methods to capture and quantify volumetric information, and to efficiently characterize and compare shape volumes. It is based on innovative theoretical and computational reformulation of volumetric computing. It consists of two theoretical constructs and their numerical implementation: the spherical wave decomposition (SWD), that provides fast, accurate automated characterization of shapes embedded within complex 3D datasets; and symplectomorphic registration with phase space regularization by entropy spectrum pathways (SYMREG), that is a non-linear volumetric registration method that allows homologous structures to be correctly warped to each other or a common template for comparison. Together, these constitute the Shape Analysis for Phenomics from Imaging Data (SAPID) method. We demonstrate its ability to automatically provide rapid quantitative segmentation and characterization of single unique datasets, and both inter-and intra-specific comparative analyses. We go beyond pairwise comparisons and analyze collections of samples from 3D data repositories, highlighting the magnified potential our method has when applied to data collections. We discuss the potential of SAPID in the broader context of generating normative morphologies required for meaningfully quantifying and comparing variations in complex 3D anatomical structures and systems.
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Affiliation(s)
- Lawrence R Frank
- Institute for Engineering in Medicine, Center for Scientific Computation in Imaging, University of California San Diego, 8950 Villa La Jolla Dr., Suite B227, La Jolla, CA, 92037, USA.
- Department of Radiology, Center for Functional MRI, University of California San Diego, 9500 Gilman Dr., #0677, La Jolla, CA, 92093-0677, USA.
| | - Timothy B Rowe
- Department of Geological Sciences, Jackson School of Geosciences, University of Texas, Austin, TX, 78712, USA
| | - Doug M Boyer
- Department of Evolutionary Anthropology, Duke University, Chapel Hill, NC, USA
| | - Lawrence M Witmer
- Department of Biomedical Sciences, Heritage College of Osteopathic Medicine, Ohio University, Athens, OH, USA
| | - Vitaly L Galinsky
- Institute for Engineering in Medicine, Center for Scientific Computation in Imaging, University of California San Diego, 8950 Villa La Jolla Dr., Suite B227, La Jolla, CA, 92037, USA
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Breeden BT, Raven TJ, Butler RJ, Rowe TB, Maidment SCR. The anatomy and palaeobiology of the early armoured dinosaur Scutellosaurus lawleri (Ornithischia: Thyreophora) from the Kayenta Formation (Lower Jurassic) of Arizona. R Soc Open Sci 2021; 8:201676. [PMID: 34295511 PMCID: PMC8292774 DOI: 10.1098/rsos.201676] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Accepted: 06/18/2021] [Indexed: 06/13/2023]
Abstract
The armoured dinosaurs, Thyreophora, were a diverse clade of ornithischians known from the Early Jurassic to the end of the Cretaceous. During the Middle and Late Jurassic, the thyreophorans radiated to evolve large body size, quadrupedality, and complex chewing mechanisms, and members of the group include some of the most iconic dinosaurs, including the plated Stegosaurus and the club-tailed Ankylosaurus; however, the early stages of thyreophoran evolution are poorly understood due to a paucity of relatively complete remains from early diverging thyreophoran taxa. Scutellosaurus lawleri is generally reconstructed as the earliest-diverging thyreophoran and is known from over 70 specimens from the Lower Jurassic Kayenta Formation of Arizona, USA. Whereas Scutellosaurus lawleri is pivotal to our understanding of character-state changes at the base of Thyreophora that can shed light on the early evolution of the armoured dinosaurs, the taxon has received limited study. Herein, we provide a detailed account of the osteology of Scutellosaurus lawleri, figuring many elements for the first time. Scutellosaurus lawleri was the only definitive bipedal thyreophoran. Histological studies indicate that it grew slowly throughout its life, possessing lamellar-zonal tissue that was a consequence neither of its small size nor phylogenetic position, but may instead be autapomorphic, and supporting other studies that suggest thyreophorans had lower basal metabolic rates than other ornithischian dinosaurs. Faunal diversity of the Kayenta Formation in comparison with other well-known Early Jurassic-aged dinosaur-bearing formations indicates that there was considerable spatial and/or environmental variation in Early Jurassic dinosaur faunas.
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Affiliation(s)
- Benjamin T. Breeden
- Department of Geology and Geophysics, University of Utah, Salt Lake City, UT, USA
- Natural History Museum of Utah, Salt Lake City, UT, USA
- Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, USA
| | - Thomas J. Raven
- Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK
- School of Environment and Technology, University of Brighton, Lewes Road, Brighton BN1 4GJ, UK
| | - Richard J. Butler
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
| | - Timothy B. Rowe
- Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, USA
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Shepherd GM, Rowe TB, Greer CA. An Evolutionary Microcircuit Approach to the Neural Basis of High Dimensional Sensory Processing in Olfaction. Front Cell Neurosci 2021; 15:658480. [PMID: 33994949 PMCID: PMC8120314 DOI: 10.3389/fncel.2021.658480] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 03/30/2021] [Indexed: 11/16/2022] Open
Abstract
Odor stimuli consist of thousands of possible molecules, each molecule with many different properties, each property a dimension of the stimulus. Processing these high dimensional stimuli would appear to require many stages in the brain to reach odor perception, yet, in mammals, after the sensory receptors this is accomplished through only two regions, the olfactory bulb and olfactory cortex. We take a first step toward a fundamental understanding by identifying the sequence of local operations carried out by microcircuits in the pathway. Parallel research provided strong evidence that processed odor information is spatial representations of odor molecules that constitute odor images in the olfactory bulb and odor objects in olfactory cortex. Paleontology provides a unique advantage with evolutionary insights providing evidence that the basic architecture of the olfactory pathway almost from the start ∼330 million years ago (mya) has included an overwhelming input from olfactory sensory neurons combined with a large olfactory bulb and olfactory cortex to process that input, driven by olfactory receptor gene duplications. We identify a sequence of over 20 microcircuits that are involved, and expand on results of research on several microcircuits that give the best insights thus far into the nature of the high dimensional processing.
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Affiliation(s)
- Gordon M Shepherd
- Department of Neuroscience, Yale School of Medicine, New Haven, CT, United States
| | - Timothy B Rowe
- Department of Geological Sciences, Jackson School of Geosciences, University of Texas at Austin, Austin, TX, United States
| | - Charles A Greer
- Department of Neuroscience, Yale School of Medicine, New Haven, CT, United States
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8
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Marsh AD, Rowe TB. Anatomy and systematics of the sauropodomorph Sarahsaurus aurifontanalis from the Early Jurassic Kayenta Formation. PLoS One 2018; 13:e0204007. [PMID: 30304035 PMCID: PMC6179219 DOI: 10.1371/journal.pone.0204007] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Accepted: 09/01/2018] [Indexed: 12/13/2022] Open
Abstract
Sarahsaurus aurifontanalis, from the Kayenta Formation of Arizona, is one of only three sauropodomorph dinosaurs known from the Early Jurassic of North America. It joins Anchisaurus polyzelus, from the older Portland Formation of the Hartford Basin, and Seitaad reussi, from the younger Navajo Sandstone of Utah, in representing the oldest North American sauropodomorphs. If it is true that sauropodomorphs were absent from North America during the Late Triassic, the relationship among these three dinosaurs offers a test of the mechanisms that drove recovery in North American biodiversity following the end-Triassic extinction event. Here we provide the first thorough description of Sarahsaurus aurifontanalis based on completed preparation and computed tomographic imaging of the holotype and referred specimens. With new anatomical data, our phylogenetic analysis supports the conclusion that Sarahsaurus aurifontanalis is nested within the primarily Gondwanan clade Massospondylidae, while agreeing with previous analyses that the three North American sauropodomorphs do not themselves form an exclusive clade. A revised diagnosis and more thorough understanding of the anatomy of Sarahsaurus aurifontanalis support the view that independent dispersal events were at least partly responsible for the recovery in North American vertebrate diversity following a major extinction event.
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Affiliation(s)
- Adam D. Marsh
- The Jackson School of Geosciences, University of Texas at Austin, Austin, Texas, United States of America
- Division of Science and Resource Management, Petrified Forest National Park, Arizona, United States of America
| | - Timothy B. Rowe
- The Jackson School of Geosciences, University of Texas at Austin, Austin, Texas, United States of America
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9
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Hoffman EA, Rowe TB. Jurassic stem-mammal perinates and the origin of mammalian reproduction and growth. Nature 2018; 561:104-108. [PMID: 30158701 DOI: 10.1038/s41586-41018-40441-41583] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 07/17/2018] [Indexed: 05/24/2023]
Abstract
Transformations in morphology, physiology and behaviour along the mammalian stem lineage were accompanied by profound modifications to reproduction and growth, including the emergence of a reproductive strategy characterized by high maternal investment in a small number of offspring1,2 and heterochronic changes in early cranial development associated with the enlargement of the brain3. Because direct fossil evidence of these transitions is lacking, the timing and sequence of these modifications are unknown. Here we present what is, to our knowledge, the first fossil record of pre- or near-hatching young of any non-mammalian synapsid. A large clutch of well-preserved perinates of the tritylodontid Kayentatherium wellesi (Cynodontia, Mammaliamorpha) was found with a presumed maternal skeleton in Early Jurassic sediments of the Kayenta Formation. The single clutch comprises at least 38 individuals, well outside the range of litter sizes documented in extant mammals. This discovery confirms that production of high numbers of offspring represents the ancestral condition for amniotes, and also constrains the timing of a reduction in clutch size along the mammalian stem. Although tiny, the perinates have an overall skull shape that is similar to that of adults, with no allometric lengthening of the face during ontogeny. The only positive allometries are associated with the bones that support the masticatory musculature. Kayentatherium diverged just before a hypothesized pulse of brain expansion that reorganized cranial architecture at the base of Mammaliaformes4-6. The association of a high number of offspring and largely isometric cranial growth in Kayentatherium is consistent with a scenario in which encephalization-and attendant shifts in metabolism and development7,8-drove later changes to mammalian reproduction.
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Affiliation(s)
- Eva A Hoffman
- Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, USA.
| | - Timothy B Rowe
- Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, USA
- The University of Texas High-Resolution X-ray Computed Tomography Facility, The University of Texas at Austin, Austin, TX, USA
- Vertebrate Paleontology Laboratory, The University of Texas at Austin, Austin, TX, USA
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10
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Hoffman EA, Rowe TB. Jurassic stem-mammal perinates and the origin of mammalian reproduction and growth. Nature 2018; 561:104-108. [DOI: 10.1038/s41586-018-0441-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 07/17/2018] [Indexed: 12/16/2022]
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11
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Rossie JB, Smith TD, Beard KC, Godinot M, Rowe TB. Nasolacrimal anatomy and haplorhine origins. J Hum Evol 2017; 114:176-183. [PMID: 29447758 DOI: 10.1016/j.jhevol.2017.11.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2017] [Revised: 11/13/2017] [Accepted: 11/15/2017] [Indexed: 11/29/2022]
Abstract
Computed tomography X-ray imaging of the internal face in well-preserved primate fossil crania permits reconstruction of the nature of their nasal anatomy, including some soft-tissue features. These features are diagnostic of the primate suborder Haplorhini, and allow reevaluation of the phylogenetic status of several purported early members of the group. Here we examine the nasolacrimal morphology of a broad sample of extant primates, as well as a number of Paleogene fossils. The extant sample confirms the distinctiveness of the two suborders. Of the fossils studied, only Shoshonius cooperi from the late-early Eocene exhibits evidence of a haplorhine nose. This suggests that the haplorhine oronasal complex may have evolved before the postorbital septum, and strengthens the claim that Shoshonius is a close relative of tarsiers and anthropoids. These results indicate that Omomyiformes is not a monophyletic group, and that few of its members possessed the derived oronasal morphology that characterizes crown haplorhines.
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Affiliation(s)
- James B Rossie
- Department of Anthropology, Stony Brook University, Stony Brook, NY 11794, USA.
| | - Timothy D Smith
- School of Physical Therapy, Slippery Rock University, Slippery Rock, PA 16057, USA; Department of Anthropology, University of Pittsburgh, Pittsburgh, PA 15260, USA
| | - K Christopher Beard
- Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA; Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Marc Godinot
- Ecole Pratique des Hautes Etudes, PSL, Sorbonne Universités - CR2P - MNHN, CNRS, UPMC - Paris 6, Muséum National d'Histoire Naturelle, Paris, France
| | - Timothy B Rowe
- Jackson School of Geosciences, The University of Texas at Austin, Austin, TX 78712, USA
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12
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Abstract
The neocortex is characterized by lamination of its neuron cell bodies in six layers, but there are few clues as to how this comes about and what is its function. Recent studies provide evidence that evolution from simple three-layer cortex may give insight into this problem. Three-layer cortex arose in the olfactory, hippocampal and dorsal cortex of the early amniote forebrain based on a cortical module of excitatory and inhibitory inputs to an intratelencephalic (IT) type of pyramidal neuron with feedback excitation and inhibition and related interneurons. We summarize recent evidence suggesting the hypothesis that the developmental program of three-layer olfactory cortex was co-opted to form six-layer mammalian neocortex, elaborating IT cortical units in layers 2-6 while adding layer 4 stellate cells, layer 5B pyramidal tract (PT) cells and layer 6 corticothalamic (CT) cells.
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Affiliation(s)
- Gordon M Shepherd
- Department of Neuroscience, Yale University School of Medicine, New Haven, CT, United States
| | - Timothy B Rowe
- Jackson School of Geosciences, University of Texas at Austin, Austin, TX, United States
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13
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Davies TG, Rahman IA, Lautenschlager S, Cunningham JA, Asher RJ, Barrett PM, Bates KT, Bengtson S, Benson RBJ, Boyer DM, Braga J, Bright JA, Claessens LPAM, Cox PG, Dong XP, Evans AR, Falkingham PL, Friedman M, Garwood RJ, Goswami A, Hutchinson JR, Jeffery NS, Johanson Z, Lebrun R, Martínez-Pérez C, Marugán-Lobón J, O'Higgins PM, Metscher B, Orliac M, Rowe TB, Rücklin M, Sánchez-Villagra MR, Shubin NH, Smith SY, Starck JM, Stringer C, Summers AP, Sutton MD, Walsh SA, Weisbecker V, Witmer LM, Wroe S, Yin Z, Rayfield EJ, Donoghue PCJ. Open data and digital morphology. Proc Biol Sci 2017; 284:rspb.2017.0194. [PMID: 28404779 PMCID: PMC5394671 DOI: 10.1098/rspb.2017.0194] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Accepted: 03/10/2017] [Indexed: 01/16/2023] Open
Abstract
Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility.
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Affiliation(s)
- Thomas G Davies
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK
| | - Imran A Rahman
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.,Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PW, UK
| | - Stephan Lautenschlager
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.,School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK
| | - John A Cunningham
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK
| | - Robert J Asher
- Museum of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | - Paul M Barrett
- Dept. Earth Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK
| | - Karl T Bates
- Institute of Ageing and Chronic Disease, University of Liverpool, Liverpool L7 8TX, UK
| | - Stefan Bengtson
- Dept. Palaeobiology, Swedish Museum of Natural History, PO Box 50007, 104 05 Stockholm, Sweden
| | - Roger B J Benson
- Dept. Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3AN, UK
| | - Doug M Boyer
- Dept. Evolutionary Anthropology, Duke University, PO Box 90383, Biological Sciences Building, 130 Science Drive, Durham, NC 27708, USA
| | - José Braga
- Computer-assisted Palaeoanthropology Team, UMR 5288 CNRS-Université de Toulouse (Paul Sabatier), Toulouse, France.,Evolutionary Studies Institute, University of Witwatersrand, Johannesburg, South Africa
| | - Jen A Bright
- School of Geosciences, University of South Florida, Tampa, FL 33620, USA.,Center for Virtualization and Applied Spatial Technologies, University of South Florida, Tampa, FL 33620, USA
| | | | - Philip G Cox
- Dept. Archaeology and Hull York Medical School, University of York, York YO10 5DD, UK
| | - Xi-Ping Dong
- School of Earth and Space Science, Peking University, Beijing 100871, People's Republic of China
| | - Alistair R Evans
- School of Biological Sciences, Monash University, Victoria 3800, Australia
| | - Peter L Falkingham
- School of Natural Sciences and Psychology, Liverpool John Moores University, Liverpool, UK
| | - Matt Friedman
- Dept. Earth and Environmental Sciences and Museum of Paleontology, University of Michigan, Ann Arbor, MI 48109, USA
| | - Russell J Garwood
- Dept. Earth Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK.,School of Earth and Environmental Sciences, University of Manchester, Manchester M13 9PL, UK
| | - Anjali Goswami
- Dept. Genetics, Evolution and Environment, and Dept. Earth Sciences, University College London, Gower Street, London SW17 7PL, UK
| | - John R Hutchinson
- Structure and Motion Lab, Dept. Comparative Biomedical Sciences, The Royal Veterinary College, Hawkshead Lane, Hatfield, Hertfordshire AL9 7TA, UK
| | - Nathan S Jeffery
- Institute of Ageing and Chronic Disease, University of Liverpool, Liverpool L7 8TX, UK
| | - Zerina Johanson
- Dept. Earth Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK
| | - Renaud Lebrun
- Institut des Sciences de l'Evolution de Montpellier, CC64, Université de Montpellier, campus Triolet, Place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Carlos Martínez-Pérez
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.,Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de Valencia, 46980 Paterna, Spain
| | - Jesús Marugán-Lobón
- Unidad de Paleontología, Dpto. Biología, Universidad Autónoma de Madrid, 28049 Cantoblanco, Spain
| | - Paul M O'Higgins
- Dept. Archaeology and Hull York Medical School, University of York, York YO10 5DD, UK
| | - Brian Metscher
- Dept. Theoretical Biology, University of Vienna, Althanstrasse 14, 1090, Austria
| | - Maëva Orliac
- Institut des Sciences de l'Evolution de Montpellier, CC64, Université de Montpellier, campus Triolet, Place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Timothy B Rowe
- Jackson School of Geosciences C1100, The University of Texas at Austin, Austin, TX 78712, USA
| | - Martin Rücklin
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.,Naturalis Biodiversity Center, Postbus 9517, 2300 RA Leiden, The Netherlands
| | - Marcelo R Sánchez-Villagra
- Paläontologisches Institut und Museum der Universität Zürich, Karl Schmid Strasse 4, 8006 Zürich, Switzerland
| | - Neil H Shubin
- Dept. Organismal Biology & Anatomy, University of Chicago, Chicago, IL 60637, USA
| | - Selena Y Smith
- Dept. Earth and Environmental Sciences and Museum of Paleontology, University of Michigan, Ann Arbor, MI 48109, USA
| | - J Matthias Starck
- Dept. Biology II, Ludwig-Maximilians University Munich (LMU), Großhadernerstr. 2, 82152 Planegg-Martinsried, Germany
| | - Chris Stringer
- Dept. Earth Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK
| | - Adam P Summers
- University of Washington, Friday Harbor Labs, Friday Harbor, WA 98250, USA
| | - Mark D Sutton
- Dept. Earth Science and Engineering, Imperial College, London SW7 2AZ, UK
| | - Stig A Walsh
- National Museums Scotland, Chambers Street, Edinburgh EH1 1JF, UK
| | - Vera Weisbecker
- School of Biological Sciences, The University of Queensland, St Lucia, Queensland 4072, Australia
| | - Lawrence M Witmer
- Dept. Biomedical Sciences, Ohio University Heritage College of Osteopathic Medicine, Athens, OH 45701, USA
| | - Stephen Wroe
- School of Environmental and Rural Science, University of New England, Armidale, New South Wales 2351, Australia
| | - Zongjun Yin
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.,State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, People's Republic of China
| | - Emily J Rayfield
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK
| | - Philip C J Donoghue
- School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK
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14
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Rowe TB, Shepherd GM. Role of ortho-retronasal olfaction in mammalian cortical evolution. J Comp Neurol 2016; 524:471-95. [PMID: 25975561 PMCID: PMC4898483 DOI: 10.1002/cne.23802] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2015] [Revised: 03/16/2015] [Accepted: 04/29/2015] [Indexed: 02/02/2023]
Abstract
Fossils of mammals and their extinct relatives among cynodonts give evidence of correlated transformations affecting olfaction as well as mastication, head movement, and ventilation, and suggest evolutionary coupling of these seemingly separate anatomical regions into a larger integrated system of ortho-retronasal olfaction. Evidence from paleontology and physiology suggests that ortho-retronasal olfaction played a critical role at three stages of mammalian cortical evolution: early mammalian brain development was driven in part by ortho-retronasal olfaction; the bauplan for neocortex had higher-level association functions derived from olfactory cortex; and human cortical evolution was enhanced by ortho-retronasal smell.
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Affiliation(s)
- Timothy B. Rowe
- Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, 78712 USA
| | - Gordon M. Shepherd
- Department of Neurobiology, Yale University School of Medicine, New Haven, CT, 06510 USA
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15
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Kirk EC, Daghighi P, Macrini TE, Bhullar BAS, Rowe TB. Cranial anatomy of the Duchesnean primate Rooneyia viejaensis : New insights from high resolution computed tomography. J Hum Evol 2014; 74:82-95. [DOI: 10.1016/j.jhevol.2014.03.007] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2013] [Revised: 02/28/2014] [Accepted: 03/13/2014] [Indexed: 11/16/2022]
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16
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Abstract
Features that were once considered exclusive to modern birds, such as feathers and a furcula, are now known to have first appeared in non-avian dinosaurs. However, relatively little is known of the early evolutionary history of the hyperinflated brain that distinguishes birds from other living reptiles and provides the important neurological capablities required by flight. Here we use high-resolution computed tomography to estimate and compare cranial volumes of extant birds, the early avialan Archaeopteryx lithographica, and a number of non-avian maniraptoran dinosaurs that are phylogenetically close to the origins of both Avialae and avian flight. Previous work established that avian cerebral expansion began early in theropod history and that the cranial cavity of Archaeopteryx was volumetrically intermediate between these early forms and modern birds. Our new data indicate that the relative size of the cranial cavity of Archaeopteryx is reflective of a more generalized maniraptoran volumetric signature and in several instances is actually smaller than that of other non-avian dinosaurs. Thus, bird-like encephalization indices evolved multiple times, supporting the conclusion that if Archaeopteryx had the neurological capabilities required of flight, so did at least some other non-avian maniraptorans. This is congruent with recent findings that avialans were not unique among maniraptorans in their ability to fly in some form.
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Affiliation(s)
- Amy M Balanoff
- American Museum of Natural History, Division of Paleontology, New York, New York 10024, USA.
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17
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Bhullar BAS, Marugán-Lobón J, Racimo F, Bever GS, Rowe TB, Norell MA, Abzhanov A. Birds have paedomorphic dinosaur skulls. Nature 2012; 487:223-6. [PMID: 22722850 DOI: 10.1038/nature11146] [Citation(s) in RCA: 138] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2011] [Accepted: 04/16/2012] [Indexed: 11/09/2022]
Abstract
The interplay of evolution and development has been at the heart of evolutionary theory for more than a century. Heterochrony—change in the timing or rate of developmental events—has been implicated in the evolution of major vertebrate lineages such as mammals, including humans. Birds are the most speciose land vertebrates, with more than 10,000 living species representing a bewildering array of ecologies. Their anatomy is radically different from that of other vertebrates. The unique bird skull houses two highly specialized systems: the sophisticated visual and neuromuscular coordination system allows flight coordination and exploitation of diverse visual landscapes, and the astonishing variations of the beak enable a wide range of avian lifestyles. Here we use a geometric morphometric approach integrating developmental, neontological and palaeontological data to show that the heterochronic process of paedomorphosis, by which descendants resemble the juveniles of their ancestors, is responsible for several major evolutionary transitions in the origin of birds. We analysed the variability of a series of landmarks on all known theropod dinosaur skull ontogenies as well as outgroups and birds. The first dimension of variability captured ontogeny, indicating a conserved ontogenetic trajectory. The second dimension accounted for phylogenetic change towards more bird-like dinosaurs. Basally branching eumaniraptorans and avialans clustered with embryos of other archosaurs, indicating paedomorphosis. Our results reveal at least four paedomorphic episodes in the history of birds combined with localized peramorphosis (development beyond the adult state of ancestors) in the beak. Paedomorphic enlargement of the eyes and associated brain regions parallels the enlargement of the nasal cavity and olfactory brain in mammals. This study can be a model for investigations of heterochrony in evolutionary transitions, illuminating the origin of adaptive features and inspiring studies of developmental mechanisms.
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Affiliation(s)
- Bhart-Anjan S Bhullar
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
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18
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Abstract
Many hypotheses have been postulated regarding the early evolution of the mammalian brain. Here, x-ray tomography of the Early Jurassic mammaliaforms Morganucodon and Hadrocodium sheds light on this history. We found that relative brain size expanded to mammalian levels, with enlarged olfactory bulbs, neocortex, olfactory (pyriform) cortex, and cerebellum, in two evolutionary pulses. The initial pulse was probably driven by increased resolution in olfaction and improvements in tactile sensitivity (from body hair) and neuromuscular coordination. A second pulse of olfactory enhancement then enlarged the brain to mammalian levels. The origin of crown Mammalia saw a third pulse of olfactory enhancement, with ossified ethmoid turbinals supporting an expansive olfactory epithelium in the nasal cavity, allowing full expression of a huge odorant receptor genome.
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Affiliation(s)
- Timothy B Rowe
- Jackson School of Geosciences, University of Texas, C1100, Austin, TX 78712, USA.
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19
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Rowe TB, Sues HD, Reisz RR. Dispersal and diversity in the earliest North American sauropodomorph dinosaurs, with a description of a new taxon. Proc Biol Sci 2011; 278:1044-53. [PMID: 20926438 PMCID: PMC3049036 DOI: 10.1098/rspb.2010.1867] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2010] [Accepted: 09/13/2010] [Indexed: 12/01/2022] Open
Abstract
Sauropodomorph dinosaurs originated in the Southern Hemisphere in the Middle or Late Triassic and are commonly portrayed as spreading rapidly to all corners of Pangaea as part of a uniform Late Triassic to Early Jurassic cosmopolitan dinosaur fauna. Under this model, dispersal allegedly inhibited dinosaurian diversification, while vicariance and local extinction enhanced it. However, apomorphy-based analyses of the known fossil record indicate that sauropodomorphs were absent in North America until the Early Jurassic, reframing the temporal context of their arrival. We describe a new taxon from the Kayenta Formation of Arizona that comprises the third diagnosable sauropodomorph from the Early Jurassic of North America. We analysed its relationships to test whether sauropodomorphs reached North America in a single sweepstakes event or in separate dispersals. Our finding of separate arrivals by all three taxa suggests dispersal as a chief factor in dinosaurian diversification during at least the early Mesozoic. It questions whether a 'cosmopolitan' dinosaur fauna ever existed, and corroborates that vicariance, extinction and dispersal did not operate uniformly in time or under uniform conditions during the Mesozoic. Their relative importance is best measured in narrow time slices and circumscribed geographical regions.
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Affiliation(s)
- Timothy B Rowe
- Jackson School of Geosciences, C1100, The University of Texas at Austin, Austin, TX 78712, USA.
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20
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Alonso PD, Milner AC, Ketcham RA, Cookson MJ, Rowe TB. The avian nature of the brain and inner ear of Archaeopteryx. Nature 2004; 430:666-9. [PMID: 15295597 DOI: 10.1038/nature02706] [Citation(s) in RCA: 151] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2004] [Accepted: 05/28/2004] [Indexed: 11/08/2022]
Abstract
Archaeopteryx, the earliest known flying bird (avialan) from the Late Jurassic period, exhibits many shared primitive characters with more basal coelurosaurian dinosaurs (the clade including all theropods more bird-like than Allosaurus), such as teeth, a long bony tail and pinnate feathers. However, Archaeopteryx possessed asymmetrical flight feathers on its wings and tail, together with a wing feather arrangement shared with modern birds. This suggests some degree of powered flight capability but, until now, little was understood about the extent to which its brain and special senses were adapted for flight. We investigated this problem by computed tomography scanning and three-dimensional reconstruction of the braincase of the London specimen of Archaeopteryx. Here we show the reconstruction of the braincase from which we derived endocasts of the brain and inner ear. These suggest that Archaeopteryx closely resembled modern birds in the dominance of the sense of vision and in the possession of expanded auditory and spatial sensory perception in the ear. We conclude that Archaeopteryx had acquired the derived neurological and structural adaptations necessary for flight. An enlarged forebrain suggests that it had also developed enhanced somatosensory integration with these special senses demanded by a lifestyle involving flying ability.
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Affiliation(s)
- Patricio Domínguez Alonso
- Departamento de Paleontologia, Universidad Complutense de Madrid, Ciudad Universitaría, 28040 Madrid, Spain
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21
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Stuppy WH, Maisano JA, Colbert MW, Rudall PJ, Rowe TB. Three-dimensional analysis of plant structure using high-resolution X-ray computed tomography. Trends Plant Sci 2003; 8:2-6. [PMID: 12523992 DOI: 10.1016/s1360-1385(02)00004-3] [Citation(s) in RCA: 80] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
High-resolution X-ray computed tomography (HRCT) is a non-invasive approach to 3D visualization and quantification of biological structure. The data, based on differential X-ray attenuation, are analogous to those otherwise obtainable only by serial sectioning. Requiring no fixing, sectioning or staining, HRCT produces a 3D digital map of the specimen that allows measurements and visualizations, including arbitrarily oriented sections. In spite of its application throughout the natural sciences, HRCT has yet to be applied in extant plant structural research.
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Affiliation(s)
- Wolfgang H Stuppy
- Royal Botanic Gardens, Kew, Seed Conservation Department, Wakehurst Place, Ardingly, West Sussex RH7 6TN, UK.
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