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Hussain ST, Baumann C. The human side of biodiversity: coevolution of the human niche, palaeo-synanthropy and ecosystem complexity in the deep human past. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230021. [PMID: 38583478 PMCID: PMC10999276 DOI: 10.1098/rstb.2023.0021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 12/18/2023] [Indexed: 04/09/2024] Open
Abstract
Today's biodiversity crisis fundamentally threatens the habitability of the planet, thus ranking among the primary human challenges of our time. Much emphasis is currently placed on the loss of biodiversity in the Anthropocene, yet these debates often portray biodiversity as a purely natural phenomenon without much consideration of its human dimensions and frequently lack long-term vistas. This paper offers a deep-time perspective on the key role of the evolving human niche in ecosystem functioning and biodiversity dynamics. We summarize research on past hunter-gatherer ecosystem contributions and argue that human-environment feedback systems with important biodiversity consequences are probably a recurrent feature of the Late Pleistocene, perhaps with even deeper roots. We update current understandings of the human niche in this light and suggest that the formation of palaeo-synanthropic niches in other animals proffers a powerful model system to investigate recursive interactions of foragers and ecosystems. Archaeology holds important knowledge here and shows that ecosystem contributions vary greatly in relation to different human lifeways, some of which are lost today. We therefore recommend paying more attention to the intricate relationship between biodiversity and cultural diversity, contending that promotion of the former depends on fostering the latter. This article is part of the theme issue 'Ecological novelty and planetary stewardship: biodiversity dynamics in a transforming biosphere'.
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Affiliation(s)
- Shumon T. Hussain
- MESH – Center for Multidisciplinary Environmental Studies in the Humanities & Institute of Prehistoric Archaeology, University of Cologne, Weyertal 59, 50937 Cologne, Germany
- Department of Archaeology and Heritage Studies, Aarhus University, Moesgård Allé 20, 8270 Højbjerg, Denmark
- BIOCHANGE – Center for Biodiversity Dynamics in a Changing World, Department of Biology, Aarhus University, Ny Munkegade 116, 8000 Aarhus C, Denmark
| | - Chris Baumann
- Biogeology Research Group, Department of Geosciences, University of Tübingen, Hölderlinstrasse 12, 72074 Tübingen, Germany
- Department of Geosciences and Geography, University of Helsinki, PL 64 (Gustaf Hällströmin katu 2), 00014 Helsinki, Finland
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Bull P, Guandalin C, Addis C. Modes of the Dark Ages 21 cm field accessible to a lunar radio interferometer. Philos Trans A Math Phys Eng Sci 2024; 382:20230072. [PMID: 38522462 PMCID: PMC10961186 DOI: 10.1098/rsta.2023.0072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 12/20/2023] [Indexed: 03/26/2024]
Abstract
At redshifts beyond [Formula: see text], the 21 cm line from neutral hydrogen is expected to be essentially the only viable probe of the three-dimensional matter distribution. The lunar far-side is an extremely appealing site for future radio arrays that target this signal, as it is protected from terrestrial radio frequency interference, and has no ionosphere to attenuate and absorb radio emission at low frequencies (tens of MHz and below). We forecast the sensitivity of low-frequency lunar radio arrays to the bispectrum of the 21 cm brightness temperature field, which can in turn be used to probe primordial non-Gaussianity generated by particular early universe models. We account for the loss of particular regions of Fourier space due to instrumental limitations and systematic effects, and predict the sensitivity of different representative array designs to local-type non-Gaussianity in the bispectrum, parametrized by [Formula: see text]. Under the most optimistic assumption of sample variance-limited observations, we find that [Formula: see text] could be achieved for several broad redshift bins at [Formula: see text] if foregrounds can be removed effectively. These values degrade to between [Formula: see text] and 0.7 for [Formula: see text] to [Formula: see text], respectively, when a large foreground wedge region is excluded. This article is part of a discussion meeting issue 'Astronomy from the Moon: the next decades (part 2)'.
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Affiliation(s)
- Philip Bull
- Jodrell Bank Centre for Astrophysics, University of Manchester, Manchester M13 9PL, UK
- Department of Physics and Astronomy, University of Western Cape, Cape Town 7535, South Africa
| | - Caroline Guandalin
- School of Physical and Chemical Sciences, Queen Mary University of London, London E1 4NS, UK
| | - Chris Addis
- School of Physical and Chemical Sciences, Queen Mary University of London, London E1 4NS, UK
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Wiese C, Abele M, Al B, Altmann M, Steiner A, Kalbfuß N, Strohmayr A, Ravikumar R, Park CH, Brunschweiger B, Meng C, Facher E, Ehrhardt DW, Falter-Braun P, Wang ZY, Ludwig C, Assaad FF. Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in Arabidopsis. J Cell Biol 2024; 223:e202311125. [PMID: 38558238 PMCID: PMC10983811 DOI: 10.1083/jcb.202311125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 01/31/2024] [Accepted: 02/15/2024] [Indexed: 04/04/2024] Open
Abstract
Plants often adapt to adverse or stress conditions via differential growth. The trans-Golgi network (TGN) has been implicated in stress responses, but it is not clear in what capacity it mediates adaptive growth decisions. In this study, we assess the role of the TGN in stress responses by exploring the previously identified interactome of the Transport Protein Particle II (TRAPPII) complex required for TGN structure and function. We identified physical and genetic interactions between AtTRAPPII and shaggy-like kinases (GSK3/AtSKs) and provided in vitro and in vivo evidence that the TRAPPII phosphostatus mediates adaptive responses to abiotic cues. AtSKs are multifunctional kinases that integrate a broad range of signals. Similarly, the AtTRAPPII interactome is vast and considerably enriched in signaling components. An AtSK-TRAPPII interaction would integrate all levels of cellular organization and instruct the TGN, a central and highly discriminate cellular hub, as to how to mobilize and allocate resources to optimize growth and survival under limiting or adverse conditions.
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Affiliation(s)
- Christian Wiese
- Biotechnology of Natural Products, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Miriam Abele
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
- Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Benjamin Al
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Melina Altmann
- Institute of Network Biology (INET), Molecular Targets and Therapeutics Center (MTTC), Helmholtz Center Munich, German Research Center for Environmental Health, Munich-Neuherberg, Germany
| | - Alexander Steiner
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Nils Kalbfuß
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Alexander Strohmayr
- Biotechnology of Natural Products, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Raksha Ravikumar
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Chan Ho Park
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Barbara Brunschweiger
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Chen Meng
- Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Eva Facher
- Systematic Botany and Mycology, Faculty of Biology, Ludwig-Maximilians-Universität (LMU) München, Planegg-Martinsried, Germany
| | - David W. Ehrhardt
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Pascal Falter-Braun
- Institute of Network Biology (INET), Molecular Targets and Therapeutics Center (MTTC), Helmholtz Center Munich, German Research Center for Environmental Health, Munich-Neuherberg, Germany
| | - Zhi-Yong Wang
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Christina Ludwig
- Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Farhah F. Assaad
- Biotechnology of Natural Products, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
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De Angelis D, Longetti L, Bonano G, Pelli Cresi JS, Foglia L, Pancaldi M, Capotondi F, Pedersoli E, Bencivenga F, Krstulovic M, Menk RH, D'Addato S, Orlando S, de Simone M, Ingle RA, Bleiner D, Coreno M, Principi E, Chergui M, Masciovecchio C, Mincigrucci R. A sub-100 nm thickness flat jet for extreme ultraviolet to soft X-ray absorption spectroscopy. J Synchrotron Radiat 2024; 31:S1600577524001875. [PMID: 38592969 DOI: 10.1107/s1600577524001875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 02/26/2024] [Indexed: 04/11/2024]
Abstract
Experimental characterization of the structural, electronic and dynamic properties of dilute systems in aqueous solvents, such as nanoparticles, molecules and proteins, are nowadays an open challenge. X-ray absorption spectroscopy (XAS) is probably one of the most established approaches to this aim as it is element-specific. However, typical dilute systems of interest are often composed of light elements that require extreme-ultraviolet to soft X-ray photons. In this spectral regime, water and other solvents are rather opaque, thus demanding radical reduction of the solvent volume and removal of the liquid to minimize background absorption. Here, we present an experimental endstation designed to operate a liquid flat jet of sub-micrometre thickness in a vacuum environment compatible with extreme ultraviolet/soft XAS measurements in transmission geometry. The apparatus developed can be easily connected to synchrotron and free-electron-laser user-facility beamlines dedicated to XAS experiments. The conditions for stable generation and control of the liquid flat jet are analyzed and discussed. Preliminary soft XAS measurements on some test solutions are shown.
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Affiliation(s)
- Dario De Angelis
- CNR - Istituto Officina dei Materiali (IOM), Basovizza, Area Science Park, 34149 Trieste, Italy
| | - Luca Longetti
- Lausanne Centre for Ultrafast Science, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Gabriele Bonano
- Dipartimento FIM, Università degli Studi di Modena e Reggio Emilia, Via Campi 213/a, 41125 Modena, Italy
| | | | - Laura Foglia
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Matteo Pancaldi
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Flavio Capotondi
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Emanuele Pedersoli
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Filippo Bencivenga
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Marija Krstulovic
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Ralf Hendrik Menk
- Sezione di Trieste, Istituto Nazionale di Fisica Nucleare, Via Valerio 2, 34127 Trieste, Italy
| | - Sergio D'Addato
- Dipartimento FIM, Università degli Studi di Modena e Reggio Emilia, Via Campi 213/a, 41125 Modena, Italy
| | - Stefano Orlando
- ISM-CNR, Trieste Branch, in Basovizza Area Science Park, 34149 Trieste, Italy
| | - Monica de Simone
- CNR - Istituto Officina dei Materiali (IOM), Basovizza, Area Science Park, 34149 Trieste, Italy
| | - Rebecca A Ingle
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Davide Bleiner
- Laboratory for Advanced Analytical Technologies, EMPA, Uberlandstrasse 129, CH-8600 Dübendorf, Switzerland
| | - Marcello Coreno
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Emiliano Principi
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Majed Chergui
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Claudio Masciovecchio
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
| | - Riccardo Mincigrucci
- Elettra-Sincrotrone Trieste, Strada Statale 14-km 163.5, Basovizza, 34149 Trieste, Italy
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Ravenstijn M, Jansen RC, du Bois G, Yzer S, Klaver CCW. Empowering patients with high myopia: The significance of education. Acta Ophthalmol 2024; 102:357-363. [PMID: 37899508 DOI: 10.1111/aos.15779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 09/01/2023] [Accepted: 09/18/2023] [Indexed: 10/31/2023]
Abstract
PURPOSE To investigate the status of patient education among highly myopic individuals focusing on the presence, sources, content, timing of the education and impact on patients. METHODS Self-reported data were collected through an online 13-item questionnaire consisting of open and multiple-choice questions. The questionnaire was sent to 250 highly myopic members of a patient organization in the Netherlands, of whom 128 (51%) responded. RESULTS At least one acute event had occurred in 66% (84/128) of participants at the time of the questionnaire. Among all participants, 25% (32/128) had not received patient education regarding alarm symptoms for any of these events. Among those who had been informed, the ophthalmologist was the most frequent (57%, 73/128) source of information. Participants who visited the ophthalmologist annually were more frequently informed than participants without annual visits (53%, 26/49 versus 26%, 9/35, p = 0.002). Those not informed were more likely to have a more than 3 days patient delay (92%, 12/13). Doctors delay was also present; 26% (22/84) of the participants with alarm symptoms had to wait 2 or more days before the first appointment. Long-term consequences of myopia had been discussed with 102 participants (80%, 102/128), again with the ophthalmologist as the most frequent source (59%, 76/128). PERSPECTIVES Many myopic individuals have not been educated about their increased risk of acute events, which can result in patient delay and serious consequences with respect to visual prognosis. These findings underscore the critical importance of integrating patient education across the entire ophthalmic care chain for myopia.
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Affiliation(s)
- M Ravenstijn
- Rotterdam Ophthalmic Institute, Rotterdam Eye Hospital, Rotterdam, The Netherlands
- Department of Ophthalmology, Erasmus University Medical Center, Rotterdam, The Netherlands
| | - R C Jansen
- Oogvereniging, Utrecht, The Netherlands
- Groningen Bioinformatics Centre, University of Groningen, Groningen, The Netherlands
| | - G du Bois
- Oogvereniging, Utrecht, The Netherlands
| | - S Yzer
- Department of Ophthalmology, Radboud University Medical Centre, Nijmegen, The Netherlands
| | - C C W Klaver
- Department of Ophthalmology, Erasmus University Medical Center, Rotterdam, The Netherlands
- Department of Ophthalmology, Radboud University Medical Centre, Nijmegen, The Netherlands
- Department of Epidemiology, Erasmus University Medical Center, Rotterdam, The Netherlands
- Institute of Molecular and Clinical Ophthalmology, University of Basel, Basel, Switzerland
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Bediou B, Cekic S, Bavelier D. Not screens but their context of use impact cognitive development: a commentary on Yang et al. (2023). J Child Psychol Psychiatry 2024; 65:726-728. [PMID: 38098289 DOI: 10.1111/jcpp.13932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 12/04/2023] [Indexed: 04/18/2024]
Abstract
There have been extensive debates about the impact of the digital transformation on human development. A recent study by Yang and colleagues highlights the importance of considering context of use, beyond amount of use. In their study, children from parents who reported having TV-on during family meals when they were 2 years old showed poorer cognitive development at age 3.5 as compared to those with TV-off during family meals. This highlights the importance of considering the context of use when studying effect of screen use. While Yang et al. discuss the distracting effects of TV-on sensory processing, we propose an alternative - and not mutually exclusive - interpretation based on TV induced deprivation of family interactions. On a more practical note, this should encourage to preserve screen-free time, especially during structured time such as family meals, in order to maintain family interactions known to be critical to development.
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Affiliation(s)
- Benoit Bediou
- Faculty of Psychology and Education Science, University of Geneva, Geneva, Switzerland
- Fondation Campus Biotech, Geneva, Switzerland
- Brain and Behavior Lab, Campus Biotech, Geneva, Switzerland
| | - Sezen Cekic
- Faculty of Psychology and Education Science, University of Geneva, Geneva, Switzerland
- Fondation Campus Biotech, Geneva, Switzerland
- Brain and Behavior Lab, Campus Biotech, Geneva, Switzerland
| | - Daphné Bavelier
- Faculty of Psychology and Education Science, University of Geneva, Geneva, Switzerland
- Fondation Campus Biotech, Geneva, Switzerland
- Brain and Behavior Lab, Campus Biotech, Geneva, Switzerland
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7
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Stojak J, Rocha D, Mörke C, Kühn C, Blanquet V, Taniguchi H. Establishment of a cloning-free CRISPR/Cas9 protocol to generate large deletions in the bovine MDBK cell line. J Appl Genet 2024; 65:399-402. [PMID: 38418802 PMCID: PMC11003909 DOI: 10.1007/s13353-024-00846-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 01/11/2024] [Accepted: 02/18/2024] [Indexed: 03/02/2024]
Abstract
The CRISPR/Cas9 technique applied to modify the cattle genome has value in increasing animal health and welfare. Here, we established a simple, fast, and efficient cloning-free CRISPR/Cas9 protocol for large deletions of genomic loci in the frequently used model bovine MDBK cell line. The main advantages of our protocol are as follows: (i) pre-screening of the sgRNA efficiency with a fast and simple cleavage assay, (ii) reliable detection of genomic edits primarily by PCR and confirmed by DNA sequencing, and (iii) single cell sorting with FACS providing specific genetic information from modified cells of interest. Therefore, our method could be successfully applied in different studies, including functional validation of any genetic or regulatory elements.
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Affiliation(s)
- Joanna Stojak
- Department of Experimental Embryology, Institute of Genetics and Animal Biotechnology, Polish Academy of Sciences, Jastrzębiec, Poland.
| | - Dominique Rocha
- INRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France
| | - Caroline Mörke
- Research Institute for Farm Animal Biology (FBN), Institute of Genome Biology, Wilhelm-Stahl-Allee 2, 18196, Dummerstorf, Germany
| | - Christa Kühn
- Research Institute for Farm Animal Biology (FBN), Institute of Genome Biology, Wilhelm-Stahl-Allee 2, 18196, Dummerstorf, Germany
- Agricultural and Environmental Faculty, University Rostock, 18059, Rostock, Germany
- Friedrich-Loeffler-Institut (FLI), 17493, Greifswald, Insel Riems, Germany
| | - Veronique Blanquet
- Faculté Des Sciences Et Techniques, University of Limoges, 123 Avenue Albert Thomas, 87060, Limoges, France
| | - Hiroaki Taniguchi
- Department of Experimental Embryology, Institute of Genetics and Animal Biotechnology, Polish Academy of Sciences, Jastrzębiec, Poland.
- African Genome Center, University Mohammed VI Polytechnic (UM6P), Lot 660, Hay Moulay Rachid, 43150, Ben Guerir, Morocco.
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Syeda SM, Tsegai ZJ, Cazenave M, Skinner MM, Kivell TL. Cortical bone architecture of hominid intermediate phalanges reveals functional signals of locomotion and manipulation. Am J Biol Anthropol 2024; 184:e24902. [PMID: 38400773 DOI: 10.1002/ajpa.24902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 11/03/2023] [Accepted: 01/13/2024] [Indexed: 02/26/2024]
Abstract
OBJECTIVES Reconstruction of fossil hominin manual behaviors often relies on comparative analyses of extant hominid hands to understand the relationship between hand use and skeletal morphology. In this context, the intermediate phalanges remain understudied. Thus, here we investigate cortical bone morphology of the intermediate phalanges of extant hominids and compare it to the cortical structure of the proximal phalanges, to investigate the relationship between cortical bone structure and inferred loading during manual behaviors. MATERIALS AND METHODS Using micro-CT data, we analyze cortical bone structure of the intermediate phalangeal shaft of digits 2-5 in Pongo pygmaeus (n = 6 individuals), Gorilla gorilla (n = 22), Pan spp. (n = 23), and Homo sapiens (n = 23). The R package morphomap is used to study cortical bone distribution, cortical thickness and cross-sectional properties within and across taxa. RESULTS Non-human great apes generally have thick cortical bone on the palmar shaft, with Pongo only having thick cortex on the peaks of the flexor sheath ridges, while African apes have thick cortex along the entire flexor sheath ridge and proximal to the trochlea. Humans are distinct in having thicker dorsal shaft cortex as well as thick cortex at the disto-palmar region of the shaft. DISCUSSION Variation in cortical bone distribution and properties of the intermediate phalanges is consistent with differences in locomotor and manipulative behaviors in extant great apes. Comparisons between the intermediate and proximal phalanges reveals similar patterns of cortical bone distribution within each taxon but with potentially greater load experienced by the proximal phalanges, even in knuckle-walking African apes. This study provides a comparative context for the reconstruction of habitual hand use in fossil hominins and hominids.
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Affiliation(s)
- Samar M Syeda
- Skeletal Biology Research Centre, School of Anthropology and Conservation, University of Kent, Canterbury, UK
| | - Zewdi J Tsegai
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, Illinois, USA
| | - Marine Cazenave
- Department of Anatomy, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa
- Department of Human Origins, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Division of Anthropology, American Museum of Natural History (AMNH), New York, USA
| | - Matthew M Skinner
- Department of Human Origins, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Tracy L Kivell
- Department of Human Origins, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
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Grueneisen S, Török G, Wathiyage Don A, Ruggeri A. Young children's adaptive partner choice in cooperation and competition contexts. Child Dev 2024; 95:1023-1031. [PMID: 37946614 DOI: 10.1111/cdev.14036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 08/28/2023] [Accepted: 10/23/2023] [Indexed: 11/12/2023]
Abstract
Choosing adequate partners is essential for cooperation, but how children calibrate their partner choice to specific social challenges is unknown. In two experiments, 4- to 7-year-olds (N = 189, 49% girls, mostly White, data collection: 03.2021-09.2022) were presented with partners in possession of different positive qualities. Children then recruited partners for hypothetical tasks that differed with respect to the quality necessary for success. Children and the selected partner either worked together toward a common goal or competed against each other. From age 5, children selectively chose individuals in possession of task-relevant qualities as cooperative partners while avoiding them as competitors. Younger children chose partners indiscriminately. Children thus learn to strategically adjust their partner choice depending on context-specific task demands and different social goals.
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Affiliation(s)
| | - Georgina Török
- Max Planck Institute for Human Development, Berlin, Germany
| | - Anushari Wathiyage Don
- Max Planck Institute for Human Development, Berlin, Germany
- Technical University Munich, Munich, Germany
| | - Azzurra Ruggeri
- Max Planck Institute for Human Development, Berlin, Germany
- Technical University Munich, Munich, Germany
- Central European University, Vienna, Austria
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Kocevska D, Trajanoska K, Mulder RH, Koopman-Verhoeff ME, Luik AI, Tiemeier H, van Someren EJW. Are some children genetically predisposed to poor sleep? A polygenic risk study in the general population. J Child Psychol Psychiatry 2024; 65:710-719. [PMID: 37936537 DOI: 10.1111/jcpp.13899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 08/22/2023] [Indexed: 11/09/2023]
Abstract
BACKGROUND Twin studies show moderate heritability of sleep traits: 40% for insomnia symptoms and 46% for sleep duration. Genome-wide association studies (GWAS) have identified genetic variants involved in insomnia and sleep duration in adults, but it is unknown whether these variants affect sleep during early development. We assessed whether polygenic risk scores for insomnia (PRS-I) and sleep duration (PRS-SD) affect sleep throughout early childhood to adolescence. METHODS We included 2,458 children of European ancestry (51% girls). Insomnia-related items of the Child Behavior Checklist were reported by mothers at child's age 1.5, 3, and 6 years. At 10-15 years, the Sleep Disturbance Scale for Children and actigraphy were assessed in a subsample (N = 975). Standardized PRS-I and PRS-SD (higher scores indicate genetic susceptibility for insomnia and longer sleep duration, respectively) were computed at multiple p-value thresholds based on largest GWAS to date. RESULTS Children with higher PRS-I had more insomnia-related sleep problems between 1.5 and 15 years (BPRS-I < 0.001 = .09, 95% CI: 0.05; 0.14). PRS-SD was not associated with mother-reported sleep problems. A higher PRS-SD was in turn associated with longer actigraphically estimated sleep duration (BPRS-SD < 5e08 = .05, 95% CI: 0.001; 0.09) and more wake after sleep onset (BPRS-SD < 0.005 = .25, 95% CI: 0.04; 0.47) at 10-15 years, but these associations did not survive multiple testing correction. CONCLUSIONS Children who are genetically predisposed to insomnia have more insomnia-like sleep problems, whereas those who are genetically predisposed to longer sleep have longer sleep duration, but are also more awake during the night in adolescence. This indicates that polygenic risk for sleep traits, based on GWAS in adults, affects sleep already in children.
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Affiliation(s)
- Desana Kocevska
- Department of Sleep and Cognition, Netherlands Institute for Neuroscience, Amsterdam, The Netherlands
- Department of Child and Adolescent Psychiatry/Psychology, Erasmus MC University Medical Center, Rotterdam, The Netherlands
- Generation R Study, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - Katerina Trajanoska
- Department of Internal Medicine, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - Rosa H Mulder
- Department of Child and Adolescent Psychiatry/Psychology, Erasmus MC University Medical Center, Rotterdam, The Netherlands
- Generation R Study, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - M Elisabeth Koopman-Verhoeff
- Department of Child and Adolescent Psychiatry/Psychology, Erasmus MC University Medical Center, Rotterdam, The Netherlands
- Generation R Study, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - Annemarie I Luik
- Department of Child and Adolescent Psychiatry/Psychology, Erasmus MC University Medical Center, Rotterdam, The Netherlands
- Department of Epidemiology, Erasmus MC University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - Henning Tiemeier
- The Department of Social and Behavioral Science, Harvard TH Chan School of Public Health, Boston, MA, USA
| | - Eus J W van Someren
- Department of Sleep and Cognition, Netherlands Institute for Neuroscience, Amsterdam, The Netherlands
- Department of Psychiatry, Amsterdam Public Health Research Institute and Amsterdam Neuroscience Research Institute, Amsterdam UMC, Vrije Universiteit, Amsterdam, The Netherlands
- Department of Integrative Neurophysiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
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11
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Jourdain E, Karoliussen R, Fordyce Martin SL, Langangen Ø, Robeck T, Borgå K, Ruus A, Foote AD. Social and genetic connectivity despite ecological variation in a killer whale network. Proc Biol Sci 2024; 291:20240524. [PMID: 38628123 PMCID: PMC11022014 DOI: 10.1098/rspb.2024.0524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 03/18/2024] [Indexed: 04/19/2024] Open
Abstract
Philopatric kin-based societies encourage a narrow breadth of conservative behaviours owing to individuals primarily learning from close kin, promoting behavioural homogeneity. However, weaker social ties beyond kin, and across a behaviourally diverse social landscape, could be sufficient to induce variation and a greater ecological niche breadth. We investigated a network of 457 photo-identified killer whales from Norway (548 encounters in 2008-2021) with diet data available (46 mixed-diet individuals feeding on both fish and mammals, and 411 exclusive fish-eaters) to quantify patterns of association within and between diet groups, and to identify underlying correlates. We genotyped a subset of 106 whales to assess patterns of genetic differentiation. Our results suggested kinship as main driver of social bonds within and among cohesive social units, while diet was most likely a consequence reflective of cultural diffusion, rather than a driver. Flexible associations within and between ecologically diverse social units led to a highly connected network, reducing social and genetic differentiation between diet groups. Our study points to a role of social connectivity, in combination with individual behavioural variation, in influencing population ecology in killer whales.
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Affiliation(s)
- Eve Jourdain
- Department of Biosciences, University of Oslo, 0316 Oslo, Norway
- Norwegian Orca Survey, 8480 Andenes, Norway
| | | | - Sarah L. Fordyce Martin
- Department of Natural History, NTNU University Museum, Norwegian University of Science and Technologies (NTNU), 7491 Trondheim, Norway
| | | | - Todd Robeck
- Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL 32819, USA
| | - Katrine Borgå
- Department of Biosciences, University of Oslo, 0316 Oslo, Norway
| | - Anders Ruus
- Department of Biosciences, University of Oslo, 0316 Oslo, Norway
- Norwegian Institute of Water Research, 32821 Oslo, Norway
| | - Andrew D. Foote
- Department of Biosciences, University of Oslo, 0316 Oslo, Norway
- Department of Natural History, NTNU University Museum, Norwegian University of Science and Technologies (NTNU), 7491 Trondheim, Norway
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12
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Schauenburg D, Gao B, Rochet LNC, Schüler D, Coelho JAS, Ng DYW, Chudasama V, Kuan SL, Weil T. Macrocyclic Dual-Locked "Turn-On" Drug for Selective and Traceless Release in Cancer Cells. Angew Chem Int Ed Engl 2024; 63:e202314143. [PMID: 38179812 DOI: 10.1002/anie.202314143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 12/21/2023] [Accepted: 12/27/2023] [Indexed: 01/06/2024]
Abstract
Drug safety and efficacy due to premature release into the bloodstream and poor biodistribution remains a problem despite seminal advances in this area. To circumvent these limitations, we report drug cyclization based on dynamic covalent linkages to devise a dual lock for the small-molecule anticancer drug, camptothecin (CPT). Drug activity is "locked" within the cyclic structure by the redox responsive disulfide and pH-responsive boronic acid-salicylhydroxamate and turns on only in the presence of acidic pH, reactive oxygen species and glutathione through traceless release. Notably, the dual-responsive CPT is more active (100-fold) than the non-cleavable (permanently closed) analogue. We further include a bioorthogonal handle in the backbone for functionalization to generate cyclic-locked, cell-targeting peptide- and protein-CPTs, for targeted delivery of the drug and traceless release in triple negative metastatic breast cancer cells to inhibit cell growth at low nanomolar concentrations.
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Affiliation(s)
- Dominik Schauenburg
- Synthesis of Macromolecules, Max Planck Institute for Polymer Research, 55128, Mainz, Germany
| | - Bingjie Gao
- Synthesis of Macromolecules, Max Planck Institute for Polymer Research, 55128, Mainz, Germany
| | - Léa N C Rochet
- Department of Chemistry, University College London, London, WC1H 0AJ, UK
| | - Darijan Schüler
- Synthesis of Macromolecules, Max Planck Institute for Polymer Research, 55128, Mainz, Germany
| | - Jaime A S Coelho
- Centro de Química Estrutural, Institute of Molecular Sciences, Faculty of Sciences, University of Lisbon, 1749-016, Lisbon, Portugal
| | - David Y W Ng
- Synthesis of Macromolecules, Max Planck Institute for Polymer Research, 55128, Mainz, Germany
| | - Vijay Chudasama
- Department of Chemistry, University College London, London, WC1H 0AJ, UK
| | - Seah Ling Kuan
- Synthesis of Macromolecules, Max Planck Institute for Polymer Research, 55128, Mainz, Germany
- Institute of Inorganic Chemistry I, Ulm University, 89081, Ulm, Germany
| | - Tanja Weil
- Synthesis of Macromolecules, Max Planck Institute for Polymer Research, 55128, Mainz, Germany
- Institute of Inorganic Chemistry I, Ulm University, 89081, Ulm, Germany
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13
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Sorrentino D, Ranallo S, Nakamura E, Franco E, Ricci F. Synthetic Genes For Dynamic Regulation Of DNA-Based Receptors. Angew Chem Int Ed Engl 2024; 63:e202319382. [PMID: 38457363 DOI: 10.1002/anie.202319382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 03/05/2024] [Accepted: 03/07/2024] [Indexed: 03/10/2024]
Abstract
We present a strategy to control dynamically the loading and release of molecular ligands from synthetic nucleic acid receptors using in vitro transcription. We demonstrate this by engineering three model synthetic DNA-based receptors: a triplex-forming DNA complex, an ATP-binding aptamer, and a hairpin strand, whose ability to bind their specific ligands can be cotranscriptionally regulated (activated or inhibited) through specific RNA molecules produced by rationally designed synthetic genes. The kinetics of our DNA sensors and their genetically generated inputs can be captured using differential equation models, corroborating the predictability of the approach used. This approach shows that highly programmable nucleic acid receptors can be controlled with molecular instructions provided by dynamic transcriptional systems, illustrating their promise in the context of coupling DNA nanotechnology with biological signaling.
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Affiliation(s)
- Daniela Sorrentino
- Department of Chemistry, University of Rome, Tor Vergata, Via della Ricerca Scientifica, 00133, Rome, Italy
- Department of Mechanical and Aerospace Engineering and of Bioengineering, University of California at Los Angeles, 420 Westwood Plaza, Los Angeles, California, 90095, United States
| | - Simona Ranallo
- Department of Chemistry, University of Rome, Tor Vergata, Via della Ricerca Scientifica, 00133, Rome, Italy
| | - Eiji Nakamura
- Department of Mechanical and Aerospace Engineering and of Bioengineering, University of California at Los Angeles, 420 Westwood Plaza, Los Angeles, California, 90095, United States
| | - Elisa Franco
- Department of Mechanical and Aerospace Engineering and of Bioengineering, University of California at Los Angeles, 420 Westwood Plaza, Los Angeles, California, 90095, United States
| | - Francesco Ricci
- Department of Chemistry, University of Rome, Tor Vergata, Via della Ricerca Scientifica, 00133, Rome, Italy
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14
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Gligorić V, van Kleef GA, Rutjens BT. How social evaluations shape trust in 45 types of scientists. PLoS One 2024; 19:e0299621. [PMID: 38635582 PMCID: PMC11025804 DOI: 10.1371/journal.pone.0299621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 02/13/2024] [Indexed: 04/20/2024] Open
Abstract
Science can offer solutions to a wide range of societal problems. Key to capitalizing on such solutions is the public's trust and willingness to grant influence to scientists in shaping policy. However, previous research on determinants of trust is limited and does not factor in the diversity of scientific occupations. The present study (N = 2,780; U.S. participants) investigated how four well-established dimensions of social evaluations (competence, assertiveness, morality, warmth) shape trust in 45 types of scientists (from agronomists to zoologists). Trust in most scientists was relatively high but varied considerably across occupations. Perceptions of morality and competence emerged as the most important antecedents of trust, in turn predicting the willingness to grant scientists influence in managing societal problems. Importantly, the contribution of morality (but not competence) varied across occupations: Morality was most strongly associated with trust in scientists who work on contentious and polarized issues (e.g., climatologists). Therefore, the diversity of scientific occupations must be taken into account to more precisely map trust, which is important for understanding when scientific solutions find their way to policy.
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Affiliation(s)
- Vukašin Gligorić
- Departement of Social Psychology, University of Amsterdam, Amsterdam, The Netherlands
| | - Gerben A. van Kleef
- Departement of Social Psychology, University of Amsterdam, Amsterdam, The Netherlands
| | - Bastiaan T. Rutjens
- Departement of Social Psychology, University of Amsterdam, Amsterdam, The Netherlands
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15
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Ray A, Minh Tran TT, Santos Natividade RD, Moreira RA, Simpson JD, Mohammed D, Koehler M, L Petitjean SJ, Zhang Q, Bureau F, Gillet L, Poma AB, Alsteens D. Single-Molecule Investigation of the Binding Interface Stability of SARS-CoV-2 Variants with ACE2. ACS Nanosci Au 2024; 4:136-145. [PMID: 38644967 PMCID: PMC11027127 DOI: 10.1021/acsnanoscienceau.3c00060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 02/20/2024] [Accepted: 02/21/2024] [Indexed: 04/23/2024]
Abstract
The SARS-CoV-2 pandemic spurred numerous research endeavors to comprehend the virus and mitigate its global severity. Understanding the binding interface between the virus and human receptors is pivotal to these efforts and paramount to curbing infection and transmission. Here we employ atomic force microscopy and steered molecular dynamics simulation to explore SARS-CoV-2 receptor binding domain (RBD) variants and angiotensin-converting enzyme 2 (ACE2), examining the impact of mutations at key residues upon binding affinity. Our results show that the Omicron and Delta variants possess strengthened binding affinity in comparison to the Mu variant. Further, using sera from individuals either vaccinated or with acquired immunity following Delta strain infection, we assess the impact of immunity upon variant RBD/ACE2 complex formation. Single-molecule force spectroscopy analysis suggests that vaccination before infection may provide stronger protection across variants. These results underscore the need to monitor antigenic changes in order to continue developing innovative and effective SARS-CoV-2 abrogation strategies.
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Affiliation(s)
- Ankita Ray
- Louvain
Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
| | - Thu Thi Minh Tran
- Faculty
of Materials Science and Technology, University
of Science—VNU HCM, 227 Nguyen Van Cu Street, District 5, 700000 Ho Chi Minh City, Vietnam
- Vietnam
National University, 700000 Ho Chi Minh City, Vietnam
| | - Rita dos Santos Natividade
- Louvain
Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
| | - Rodrigo A. Moreira
- Basque
Center for Applied Mathematics, Mazarredo 14, 48009 Bilbao, Spain
| | - Joshua D. Simpson
- Louvain
Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
| | - Danahe Mohammed
- Louvain
Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
| | - Melanie Koehler
- Louvain
Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
| | - Simon J. L Petitjean
- Louvain
Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
| | - Qingrong Zhang
- Louvain
Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
| | - Fabrice Bureau
- Laboratory
of Cellular and Molecular Immunology, GIGA Institute, Liège University, 4000 Liège, Belgium
| | - Laurent Gillet
- Immunology-Vaccinology
Lab of the Faculty of Veterinary Medicine, Liège University, 4000 Liège, Belgium
| | - Adolfo B. Poma
- Institute
of Fundamental Technological Research, Polish Academy of Sciences, Pawińskiego 5B, 02-106 Warsaw, Poland
| | - David Alsteens
- Louvain
Institute of Biomolecular Science and Technology, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
- WELBIO
department, WEL Research Institute, 1300 Wavre, Belgium
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16
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Galán MF, Serrano J, Jarque EC, Borrego-Varillas R, Lucchini M, Reduzzi M, Nisoli M, Brahms C, Travers JC, Hernández-García C, San Roman J. Robust Isolated Attosecond Pulse Generation with Self-Compressed Subcycle Drivers from Hollow Capillary Fibers. ACS Photonics 2024; 11:1673-1683. [PMID: 38645995 PMCID: PMC11027177 DOI: 10.1021/acsphotonics.3c01897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 03/05/2024] [Accepted: 03/05/2024] [Indexed: 04/23/2024]
Abstract
High-order harmonic generation (HHG) arising from the nonperturbative interaction of intense light fields with matter constitutes a well-established tabletop source of coherent extreme-ultraviolet and soft X-ray radiation, which is typically emitted as attosecond pulse trains. However, ultrafast applications increasingly demand isolated attosecond pulses (IAPs), which offer great promise for advancing precision control of electron dynamics. Yet, the direct generation of IAPs typically requires the synthesis of near-single-cycle intense driving fields, which is technologically challenging. In this work, we theoretically demonstrate a novel scheme for the straightforward and compact generation of IAPs from multicycle infrared drivers using hollow capillary fibers (HCFs). Starting from a standard, intense multicycle infrared pulse, a light transient is generated by extreme soliton self-compression in a HCF with decreasing pressure and is subsequently used to drive HHG in a gas target. Owing to the subcycle confinement of the HHG process, high-contrast IAPs are continuously emitted almost independently of the carrier-envelope phase (CEP) of the optimally self-compressed drivers. This results in a CEP-robust scheme which is also stable under macroscopic propagation of the high harmonics in a gas target. Our results open the way to a new generation of integrated all-fiber IAP sources, overcoming the efficiency limitations of usual gating techniques for multicycle drivers.
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Affiliation(s)
- Marina Fernández Galán
- Grupo
de Investigación en Aplicaciones del Láser y Fotónica,
Departamento de Física Aplicada, Universidad de Salamanca, Salamanca, 37008, Spain
- Unidad
de Excelencia en Luz y Materia Estructuradas (LUMES), Universidad de Salamanca, Salamanca, 37008, Spain
| | - Javier Serrano
- Grupo
de Investigación en Aplicaciones del Láser y Fotónica,
Departamento de Física Aplicada, Universidad de Salamanca, Salamanca, 37008, Spain
- Unidad
de Excelencia en Luz y Materia Estructuradas (LUMES), Universidad de Salamanca, Salamanca, 37008, Spain
| | - Enrique Conejero Jarque
- Grupo
de Investigación en Aplicaciones del Láser y Fotónica,
Departamento de Física Aplicada, Universidad de Salamanca, Salamanca, 37008, Spain
- Unidad
de Excelencia en Luz y Materia Estructuradas (LUMES), Universidad de Salamanca, Salamanca, 37008, Spain
| | - Rocío Borrego-Varillas
- Institute
for Photonics and Nanotechnologies (IFN), Consiglio Nazionale delle Ricerche (CNR), Piazza Leonardo da Vinci 32, Milano, 20133, Italy
| | - Matteo Lucchini
- Institute
for Photonics and Nanotechnologies (IFN), Consiglio Nazionale delle Ricerche (CNR), Piazza Leonardo da Vinci 32, Milano, 20133, Italy
- Department
of Physics, Politecnico di Milano, Piazza Leonardo da Vinci 32, Milano, 20133, Italy
| | - Maurizio Reduzzi
- Institute
for Photonics and Nanotechnologies (IFN), Consiglio Nazionale delle Ricerche (CNR), Piazza Leonardo da Vinci 32, Milano, 20133, Italy
- Department
of Physics, Politecnico di Milano, Piazza Leonardo da Vinci 32, Milano, 20133, Italy
| | - Mauro Nisoli
- Institute
for Photonics and Nanotechnologies (IFN), Consiglio Nazionale delle Ricerche (CNR), Piazza Leonardo da Vinci 32, Milano, 20133, Italy
- Department
of Physics, Politecnico di Milano, Piazza Leonardo da Vinci 32, Milano, 20133, Italy
| | - Christian Brahms
- School
of Engineering and Physical Sciences, Heriot-Watt
University, Edinburgh, EH14 4AS, United
Kingdom
| | - John C. Travers
- School
of Engineering and Physical Sciences, Heriot-Watt
University, Edinburgh, EH14 4AS, United
Kingdom
| | - Carlos Hernández-García
- Grupo
de Investigación en Aplicaciones del Láser y Fotónica,
Departamento de Física Aplicada, Universidad de Salamanca, Salamanca, 37008, Spain
- Unidad
de Excelencia en Luz y Materia Estructuradas (LUMES), Universidad de Salamanca, Salamanca, 37008, Spain
| | - Julio San Roman
- Grupo
de Investigación en Aplicaciones del Láser y Fotónica,
Departamento de Física Aplicada, Universidad de Salamanca, Salamanca, 37008, Spain
- Unidad
de Excelencia en Luz y Materia Estructuradas (LUMES), Universidad de Salamanca, Salamanca, 37008, Spain
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17
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Chen S, Barritt JD, Cascella R, Bigi A, Cecchi C, Banchelli M, Gallo A, Jarvis JA, Chiti F, Dobson CM, Fusco G, De Simone A. Structure-Toxicity Relationship in Intermediate Fibrils from α-Synuclein Condensates. J Am Chem Soc 2024; 146:10537-10549. [PMID: 38567991 PMCID: PMC11027145 DOI: 10.1021/jacs.3c14703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 03/14/2024] [Accepted: 03/15/2024] [Indexed: 04/18/2024]
Abstract
The aberrant aggregation of α-synuclein (αS) into amyloid fibrils is associated with a range of highly debilitating neurodegenerative conditions, including Parkinson's disease. Although the structural properties of mature amyloids of αS are currently understood, the nature of transient protofilaments and fibrils that appear during αS aggregation remains elusive. Using solid-state nuclear magnetic resonance (ssNMR), cryogenic electron microscopy (cryo-EM), and biophysical methods, we here characterized intermediate amyloid fibrils of αS forming during the aggregation from liquid-like spherical condensates to mature amyloids adopting the structure of pathologically observed aggregates. These transient amyloid intermediates, which induce significant levels of cytotoxicity when incubated with neuronal cells, were found to be stabilized by a small core in an antiparallel β-sheet conformation, with a disordered N-terminal region of the protein remaining available to mediate membrane binding. In contrast, mature amyloids that subsequently appear during the aggregation showed different structural and biological properties, including low levels of cytotoxicity, a rearranged structured core embedding also the N-terminal region, and a reduced propensity to interact with the membrane. The characterization of these two fibrillar forms of αS, and the use of antibodies and designed mutants, enabled us to clarify the role of critical structural elements endowing intermediate amyloid species with the ability to interact with membranes and induce cytotoxicity.
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Affiliation(s)
- Serene
W. Chen
- Department
of Life Sciences, Imperial College London, London SW7 2AZ, U.K.
| | - Joseph D. Barritt
- Department
of Life Sciences, Imperial College London, London SW7 2AZ, U.K.
| | - Roberta Cascella
- Department
of Experimental and Clinical Biomedical Sciences, Section of Biochemistry, University of Florence, Florence 50134, Italy
| | - Alessandra Bigi
- Department
of Experimental and Clinical Biomedical Sciences, Section of Biochemistry, University of Florence, Florence 50134, Italy
| | - Cristina Cecchi
- Department
of Experimental and Clinical Biomedical Sciences, Section of Biochemistry, University of Florence, Florence 50134, Italy
| | - Martina Banchelli
- Institute
of Applied Physics “Nello Carrara” National Research
Council of Italy, Sesto Fiorentino, Florence 50019, Italy
| | - Angelo Gallo
- Department
of Chemistry, University of Turin, Turin 10124, Italy
| | - James A. Jarvis
- Department
of Life Sciences, Imperial College London, London SW7 2AZ, U.K.
- Randall
Centre for Cell and Molecular Biophysics and Centre for Biomolecular
Spectroscopy, King’s College London, London SE1 9RT, U.K.
| | - Fabrizio Chiti
- Department
of Experimental and Clinical Biomedical Sciences, Section of Biochemistry, University of Florence, Florence 50134, Italy
| | | | - Giuliana Fusco
- Department
of Chemistry, University of Cambridge, Cambridge CB2 1EW, U.K.
- Department
of Pharmacy, University of Naples, Naples 80131, Italy
| | - Alfonso De Simone
- Department
of Life Sciences, Imperial College London, London SW7 2AZ, U.K.
- Department
of Pharmacy, University of Naples, Naples 80131, Italy
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18
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Hinduja C, Butt HJ, Berger R. Slide electrification of drops at low velocities. Soft Matter 2024; 20:3349-3358. [PMID: 38563221 PMCID: PMC11022544 DOI: 10.1039/d4sm00019f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Accepted: 03/13/2024] [Indexed: 04/04/2024]
Abstract
Slide electrification of drops is mostly investigated on tilted plate setups. Hence, the drop charging at low sliding velocity remains unclear. We overcome the limitations by developing an electro drop friction force instrument (eDoFFI). Using eDoFFI, we investigate slide electrification at the onset of drop sliding and at low sliding velocities ≤ 1 cm s-1. The novelty of eDoFFI is the simultaneous measurements of the drop discharging current and the friction force acting on the drop. The eDoFFI tool facilitates control on drop length and width using differently shaped rings. Hereby, slide electrification experiments with the defined drop length-to-width ratios >1 and <1 are realized. We find that width of the drop is the main geometrical parameter which determines drop discharging current and charge separation. We combine Kawasaki-Furmidge friction force equation with our finding on drop discharging current. This combination facilitates the direct measurement of surface charge density (σ) deposited behind the drop. We calculate σ ≈ 45 μC m-2 on Trichloro(1H,1H,2H,2H-perfluorooctyl)silane (PFOTS) and ≈20 μC m-2 on Trichloro(octyl)silane (OTS) coated glass surfaces. We find that the charge separation by moving drops is independent of sliding velocity ≤ 1 cm s-1. The reverse sliding of drop along the same scanline facilitates calculation of the surface neutralization time constant. The eDoFFI links two scientific communities: one which focuses on the friction forces and one which focuses on the slide electrification of drops.
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Affiliation(s)
- Chirag Hinduja
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany.
| | - Hans-Jürgen Butt
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany.
| | - Rüdiger Berger
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany.
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19
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Wang X, Zhang M, Cao W. Chemical properties of superatomic Li 3O clusters from a density functional theory perspective: formation of chloride and adsorption behavior on graphynes. Phys Chem Chem Phys 2024; 26:11708-11714. [PMID: 38563498 PMCID: PMC11022547 DOI: 10.1039/d3cp05478k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Accepted: 03/18/2024] [Indexed: 04/04/2024]
Abstract
Superatomic clusters have received a lot of attention due to their ability to mimic the electronic configurations of individual atoms. Despite numerous studies of these clusters, their ability to mimic the chemical properties of individual atoms is still unclear. This also applies for Li3O/Li3O+ clusters which simulate the Na atom and its ion, but their capabilities to form a salt or be adsorbed on surfaces remain unexplored. In this work, a density functional theory investigation was performed to study the chemical formation and adsorption behavior of the superatomic Li3O cluster. The results show that Li3O mimics the chemical properties of the sodium element to form Li3O chloride and be adsorbed on graphdiyne and γ-graphyne with similar binding energy as the sodium adsorbate cases. Beyond the isolated cluster individuals, superatoms are demonstrated as elements from the 3D periodic table to construct compounds and attach onto solid surfaces.
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Affiliation(s)
- Xiao Wang
- School of Physics, East China University of Science and Technology, Shanghai 200237, China.
| | - Meng Zhang
- School of Physics, East China University of Science and Technology, Shanghai 200237, China.
| | - Wei Cao
- Nano and Molecular Systems Research Unit, University of Oulu, FIN-90014, Finland.
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20
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Okenov A, Nezlobinsky T, Zeppenfeld K, Vandersickel N, Panfilov AV. Computer based method for identification of fibrotic scars from electrograms and local activation times on the epi- and endocardial surfaces of the ventricles. PLoS One 2024; 19:e0300978. [PMID: 38625849 PMCID: PMC11020530 DOI: 10.1371/journal.pone.0300978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Accepted: 03/07/2024] [Indexed: 04/18/2024] Open
Abstract
Cardiac fibrosis stands as one of the most critical conditions leading to lethal cardiac arrhythmias. Identifying the precise location of cardiac fibrosis is crucial for planning clinical interventions in patients with various forms of ventricular and atrial arrhythmias. As fibrosis impedes and alters the path of electrical waves, detecting fibrosis in the heart can be achieved through analyzing electrical signals recorded from its surface. In current clinical practices, it has become feasible to record electrical activity from both the endocardial and epicardial surfaces of the heart. This paper presents a computational method for reconstructing 3D fibrosis using unipolar electrograms obtained from both surfaces of the ventricles. The proposed method calculates the percentage of fibrosis in various ventricular segments by analyzing the local activation times and peak-to-peak amplitudes of the electrograms. Initially, the method was tested using simulated data representing idealized fibrosis in a heart segment; subsequently, it was validated in the left ventricle with fibrosis obtained from a patient with nonischemic cardiomyopathy. The method successfully determined the location and extent of fibrosis in 204 segments of the left ventricle model with an average error of 0.0±4.3% (N = 204). Moreover, the method effectively detected fibrotic scars in the mid-myocardial region, a region known to present challenges in accurate detection using electrogram amplitude as the primary criterion.
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Affiliation(s)
- Arstanbek Okenov
- Department of Physics and Astronomy, Ghent University, Gent, Belgium
| | - Timur Nezlobinsky
- Department of Physics and Astronomy, Ghent University, Gent, Belgium
| | - Katja Zeppenfeld
- Department of Cardiology, Leiden University Medical Centre, Leiden, The Netherlands
| | - Nele Vandersickel
- Department of Physics and Astronomy, Ghent University, Gent, Belgium
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21
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Sheldon DJ, Parr JM, Crimmin MR. Defluorination of HFCs by a magnesium reagent. Dalton Trans 2024; 53:6524-6528. [PMID: 38563682 PMCID: PMC11019403 DOI: 10.1039/d4dt00636d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2024] [Accepted: 03/28/2024] [Indexed: 04/04/2024]
Abstract
Reaction of a series of HFCs with a main group reagent containing a Mg-Mg bond results in defluorination to form the corresponding magnesium fluoride complex. In the case of 1,1,1,2-tetrafluoroethane (HFC-134a) generation of the fluoride occurs alongside selective formation of 1,1-difluoroethene. DFT calculations have been carried out to better understand the selectivity and compare the barriers for sp3 C-F bond activation with sp3 C-H bond activation in this system.
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Affiliation(s)
- Daniel J Sheldon
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London, W12 0BZ, UK.
| | - Joseph M Parr
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London, W12 0BZ, UK.
| | - Mark R Crimmin
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London, W12 0BZ, UK.
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22
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Alireza Z, Maleeha M, Kaikkonen M, Fortino V. Enhancing prediction accuracy of coronary artery disease through machine learning-driven genomic variant selection. J Transl Med 2024; 22:356. [PMID: 38627847 PMCID: PMC11020205 DOI: 10.1186/s12967-024-05090-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 03/14/2024] [Indexed: 04/19/2024] Open
Abstract
Machine learning (ML) methods are increasingly becoming crucial in genome-wide association studies for identifying key genetic variants or SNPs that statistical methods might overlook. Statistical methods predominantly identify SNPs with notable effect sizes by conducting association tests on individual genetic variants, one at a time, to determine their relationship with the target phenotype. These genetic variants are then used to create polygenic risk scores (PRSs), estimating an individual's genetic risk for complex diseases like cancer or cardiovascular disorders. Unlike traditional methods, ML algorithms can identify groups of low-risk genetic variants that improve prediction accuracy when combined in a mathematical model. However, the application of ML strategies requires addressing the feature selection challenge to prevent overfitting. Moreover, ensuring the ML model depends on a concise set of genomic variants enhances its clinical applicability, where testing is feasible for only a limited number of SNPs. In this study, we introduce a robust pipeline that applies ML algorithms in combination with feature selection (ML-FS algorithms), aimed at identifying the most significant genomic variants associated with the coronary artery disease (CAD) phenotype. The proposed computational approach was tested on individuals from the UK Biobank, differentiating between CAD and non-CAD individuals within this extensive cohort, and benchmarked against standard PRS-based methodologies like LDpred2 and Lassosum. Our strategy incorporates cross-validation to ensure a more robust evaluation of genomic variant-based prediction models. This method is commonly applied in machine learning strategies but has often been neglected in previous studies assessing the predictive performance of polygenic risk scores. Our results demonstrate that the ML-FS algorithm can identify panels with as few as 50 genetic markers that can achieve approximately 80% accuracy when used in combination with known risk factors. The modest increase in accuracy over PRS performances is noteworthy, especially considering that PRS models incorporate a substantially larger number of genetic variants. This extensive variant selection can pose practical challenges in clinical settings. Additionally, the proposed approach revealed novel CAD-genetic variant associations.
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Affiliation(s)
- Z Alireza
- Institute of Biomedicine, University of Eastern Finland, 70210, Kuopio, Finland
| | - M Maleeha
- Institute of Biomedicine, University of Eastern Finland, 70210, Kuopio, Finland
| | - M Kaikkonen
- A.I.Virtanen Institute, University of Eastern Finland, 70210, Kuopio, Finland
| | - V Fortino
- Institute of Biomedicine, University of Eastern Finland, 70210, Kuopio, Finland.
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23
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Yang X, Enriquez-Cabrera A, Jacob K, Coppel Y, Salmon L, Bousseksou A. Room temperature spin crossover properties in a series of mixed-anion Fe(NH 2trz) 3(BF 4) 2-x(SiF 6) x/2 complexes. Dalton Trans 2024; 53:6830-6838. [PMID: 38546485 PMCID: PMC11019404 DOI: 10.1039/d4dt00267a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 03/24/2024] [Indexed: 04/17/2024]
Abstract
A series of mixed-anion Fe(NH2trz)3(BF4)2-x(SiF6)x/2 spin crossover complexes is obtained modifying the reaction time but also using an increase amount of tetraethyl orthosilicate as the source for the production and the incorporation of SiF62- competing with the BF42- anions present in the mother solution. The increase of the SiF62- anion inclusion to the detriment of the BF4- counterpart induces a shift of the temperature transition toward high temperatures leading to interesting bistability properties around room temperature with T1/2 spanning from 300 K to 325 K. Moreover, the implementation of a solid-liquid post synthetic modification approach from the Fe(NH2trz)3(BF4)2 parent complex with identical TEOS proportions and under certain experimental conditions lead systematically to the same Fe(NH2trz)3(BF4)1.2(SiF6)0.4 composition. This compound presents an abrupt spin crossover behaviour with a narrow hysteresis loop just above room temperature (320 K), which is stable under thermal cycling and along time with no specific storage conditions. Such crystalline powder sample incorporates homogeneous rod-shaped particles whose formation and physical properties can be followed simultaneously using infra-red spectroscopy, dynamic light scattering (DLS), transmission electronic microscopy (TEM) and optical reflectance. The observation of a stabilized single ca. 800 nm population of mixed-anion particles starting from insoluble various sizes (from nano- to microscale) Fe(NH2trz)3(BF4)2 particles supports the key role of the solvent (water molecules) on the separation, the reactivity and the reorganization of the 1D iron-triazole chains forming the packing of the structure.
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Affiliation(s)
- Xinyu Yang
- LCC, CNRS & Université de Toulouse (UPS, INP), 31077 Toulouse, France.
| | | | - Kane Jacob
- LCC, CNRS & Université de Toulouse (UPS, INP), 31077 Toulouse, France.
| | - Yannick Coppel
- LCC, CNRS & Université de Toulouse (UPS, INP), 31077 Toulouse, France.
| | - Lionel Salmon
- LCC, CNRS & Université de Toulouse (UPS, INP), 31077 Toulouse, France.
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24
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Shao Y, Gudla H, Mindemark J, Brandell D, Zhang C. Ion Transport in Polymer Electrolytes: Building New Bridges between Experiment and Molecular Simulation. Acc Chem Res 2024; 57:1123-1134. [PMID: 38569004 PMCID: PMC11025026 DOI: 10.1021/acs.accounts.3c00791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 03/13/2024] [Accepted: 03/14/2024] [Indexed: 04/05/2024]
Abstract
ConspectusPolymer electrolytes constitute a promising type of material for solid-state batteries. However, one of the bottlenecks for their practical implementation lies in the transport properties, often including restricted Li+ self-diffusion and conductivity and low cationic transference numbers. This calls for a molecular understanding of ion transport in polymer electrolytes in which molecular dynamics (MD) simulation can provide both new physical insights and quantitative predictions. Although efforts have been made in this area and qualitative pictures have emerged, direct and quantitative comparisons between experiment and simulation remain challenging because of the lack of a unified theoretical framework to connect them.In our work, we show that by computing the glass transition temperature (Tg) of the model system and using the normalized inverse temperature 1000/(T - Tg + 50), the Li+ self-diffusion coefficient can be compared quantitatively between MD simulations and experiments. This allows us to disentangle the effects of Tg and the polymer dielectric environment on ion conduction in polymer electrolytes, giving rise to the identification of an optimal solvating environment for fast ion conduction.Unlike Li+ self-diffusion coefficients and ionic conductivity, the transference number, which describes the fraction of current carried by Li+ ions, depends on the boundary conditions or the reference frame (RF). This creates a non-negligible gap when comparing experiment and simulation because the fluxes in the experimental measurements and in the linear response theory used in MD simulation are defined in different RFs. We show that by employing the Onsager theory of ion transport and applying a proper RF transformation, a much better agreement between experiment and simulation can be achieved for the PEO-LiTFSI system. This further allows us to derive the theoretical expression for the Bruce-Vincent transference number in terms of the Onsager coefficients and make a direct comparison to experiments. Since the Bruce-Vincent method is widely used to extract transference numbers from experimental data, this opens the door to calibrating MD simulations via reproducing the Bruce-Vincent transference number and using MD simulations to predict the true transference number.In addition, we also address several open questions here such as the time-scale effects on the ion-pairing phenomenon, the consistency check between different types of experiments, the need for more accurate force fields used in MD simulations, and the extension to multicomponent systems. Overall, this Account focuses on building new bridges between experiment and simulation for quantitative comparison, warnings of pitfalls when comparing apples and oranges, and clarifying misconceptions. From a physical chemistry point of view, it connects to concentrated solution theory and provides a unified theoretical framework that can maximize the power of MD simulations. Therefore, this Account will be useful for the electrochemical energy storage community at large and set examples of how to approach experiments from theory and simulation (and vice versa).
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Affiliation(s)
- Yunqi Shao
- Department of Chemistry—Ångström
Laboratory, Uppsala University, Lägerhyddsvägen 1, Box 538, 751 21 Uppsala, Sweden
| | - Harish Gudla
- Department of Chemistry—Ångström
Laboratory, Uppsala University, Lägerhyddsvägen 1, Box 538, 751 21 Uppsala, Sweden
| | - Jonas Mindemark
- Department of Chemistry—Ångström
Laboratory, Uppsala University, Lägerhyddsvägen 1, Box 538, 751 21 Uppsala, Sweden
| | - Daniel Brandell
- Department of Chemistry—Ångström
Laboratory, Uppsala University, Lägerhyddsvägen 1, Box 538, 751 21 Uppsala, Sweden
| | - Chao Zhang
- Department of Chemistry—Ångström
Laboratory, Uppsala University, Lägerhyddsvägen 1, Box 538, 751 21 Uppsala, Sweden
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25
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Andersson EKW, Wu LT, Bertoli L, Weng YC, Friesen D, Elbouazzaoui K, Bloch S, Ovsyannikov R, Giangrisostomi E, Brandell D, Mindemark J, Jiang JC, Hahlin M. Initial SEI formation in LiBOB-, LiDFOB- and LiBF 4-containing PEO electrolytes. J Mater Chem A Mater 2024; 12:9184-9199. [PMID: 38633215 PMCID: PMC11019830 DOI: 10.1039/d3ta07175h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Accepted: 03/08/2024] [Indexed: 04/19/2024]
Abstract
A limiting factor for solid polymer electrolyte (SPE)-based Li-batteries is the functionality of the electrolyte decomposition layer that is spontaneously formed at the Li metal anode. A deeper understanding of this layer will facilitate its improvement. This study investigates three SPEs - polyethylene oxide:lithium tetrafluoroborate (PEO:LiBF4), polyethylene oxide:lithium bis(oxalate)borate (PEO:LiBOB), and polyethylene oxide:lithium difluoro(oxalato)borate (PEO:LiDFOB) - using a combination of electrochemical impedance spectroscopy (EIS), galvanostatic cycling, in situ Li deposition photoelectron spectroscopy (PES), and ab initio molecular dynamics (AIMD) simulations. Through this combination, the cell performance of PEO:LiDFOB can be connected to the initial SPE decomposition at the anode interface. It is found that PEO:LiDFOB had the highest capacity retention, which is correlated to having the least decomposition at the interface. This indicates that the lower SPE decomposition at the interface still creates a more effective decomposition layer, which is capable of preventing further electrolyte decomposition. Moreover, the PES results indicate formation of polyethylene in the SEI in cells based on PEO electrolytes. This is supported by AIMD that shows a polyethylene formation pathway through free-radical polymerization of ethylene.
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Affiliation(s)
- Edvin K W Andersson
- Department of Chemistry -Ångström Laboratory, Uppsala University Box 538 Uppsala 75121 Sweden
| | - Liang-Ting Wu
- Department of Chemical Engineering, National Taiwan University of Science and Technology Taipei 106 Taiwan
| | - Luca Bertoli
- Dipartimento di Chimica, Materiali e Ingegneria Chimica "Giulio Natta", Politecnico di Milano Via Luigi Mancinelli 7 20131 Milan Italy
| | - Yi-Chen Weng
- Department of Physics and Astronomy, Uppsala University Box 516 Uppsala 75120 Sweden
| | - Daniel Friesen
- Department of Chemistry -Ångström Laboratory, Uppsala University Box 538 Uppsala 75121 Sweden
| | - Kenza Elbouazzaoui
- Department of Chemistry -Ångström Laboratory, Uppsala University Box 538 Uppsala 75121 Sweden
| | - Sophia Bloch
- Department of Chemistry -Ångström Laboratory, Uppsala University Box 538 Uppsala 75121 Sweden
| | - Ruslan Ovsyannikov
- Institute for Methods and Instrumentation for Synchrotron Radiation Research, Helmholtz-Zentrum Berlin für Materialien und Energie Albert-Einstein-Str. 15 12489 Berlin Germany
| | - Erika Giangrisostomi
- Institute for Methods and Instrumentation for Synchrotron Radiation Research, Helmholtz-Zentrum Berlin für Materialien und Energie Albert-Einstein-Str. 15 12489 Berlin Germany
| | - Daniel Brandell
- Department of Chemistry -Ångström Laboratory, Uppsala University Box 538 Uppsala 75121 Sweden
| | - Jonas Mindemark
- Department of Chemistry -Ångström Laboratory, Uppsala University Box 538 Uppsala 75121 Sweden
| | - Jyh-Chiang Jiang
- Department of Chemical Engineering, National Taiwan University of Science and Technology Taipei 106 Taiwan
| | - Maria Hahlin
- Department of Chemistry -Ångström Laboratory, Uppsala University Box 538 Uppsala 75121 Sweden
- Department of Physics and Astronomy, Uppsala University Box 516 Uppsala 75120 Sweden
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26
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El-Maiss J, Balakrishnan D, Pascual García C. Correction: Universal control of proton concentration using an electrochemically generated acid compatible with miniaturization. Nanoscale Adv 2024; 6:2217. [PMID: 38633043 PMCID: PMC11019481 DOI: 10.1039/d4na90034k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 03/11/2024] [Indexed: 04/19/2024]
Abstract
[This corrects the article DOI: 10.1039/D2NA00275B.].
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Affiliation(s)
- Janwa El-Maiss
- Nanomaterials Unit of the Materials Research and Technology Department, Luxembourg Institute of Science and Technology (LIST) Belvaux L-4422 Luxembourg
| | - Divya Balakrishnan
- Nanomaterials Unit of the Materials Research and Technology Department, Luxembourg Institute of Science and Technology (LIST) Belvaux L-4422 Luxembourg
| | - César Pascual García
- Nanomaterials Unit of the Materials Research and Technology Department, Luxembourg Institute of Science and Technology (LIST) Belvaux L-4422 Luxembourg
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27
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Söll A, Lopriore E, Ottesen A, Luxa J, Pasquale G, Sturala J, Hájek F, Jarý V, Sedmidubský D, Mosina K, Sokolović I, Rasouli S, Grasser T, Diebold U, Kis A, Sofer Z. High-κ Wide-Gap Layered Dielectric for Two-Dimensional van der Waals Heterostructures. ACS Nano 2024; 18:10397-10406. [PMID: 38557003 PMCID: PMC11025129 DOI: 10.1021/acsnano.3c10411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 03/13/2024] [Accepted: 03/20/2024] [Indexed: 04/04/2024]
Abstract
van der Waals heterostructures of two-dimensional materials have unveiled frontiers in condensed matter physics, unlocking unexplored possibilities in electronic and photonic device applications. However, the investigation of wide-gap, high-κ layered dielectrics for devices based on van der Waals structures has been relatively limited. In this work, we demonstrate an easily reproducible synthesis method for the rare-earth oxyhalide LaOBr, and we exfoliate it as a 2D layered material with a measured static dielectric constant of 9 and a wide bandgap of 5.3 eV. Furthermore, our research demonstrates that LaOBr can be used as a high-κ dielectric in van der Waals field-effect transistors with high performance and low interface defect concentrations. Additionally, it proves to be an attractive choice for electrical gating in excitonic devices based on 2D materials. Our work demonstrates the versatile realization and functionality of 2D systems with wide-gap and high-κ van der Waals dielectric environments.
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Affiliation(s)
- Aljoscha Söll
- Department
of Inorganic Chemistry, University of Chemistry
and Technology Prague, Technicka 5, 166 28, Prague 6, Czech Republic
| | - Edoardo Lopriore
- Institute
of Electrical and Microengineering, École
Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
- Institute
of Materials Science and Engineering, École
Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Asmund Ottesen
- Institute
of Electrical and Microengineering, École
Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
- Institute
of Materials Science and Engineering, École
Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jan Luxa
- Department
of Inorganic Chemistry, University of Chemistry
and Technology Prague, Technicka 5, 166 28, Prague 6, Czech Republic
| | - Gabriele Pasquale
- Institute
of Electrical and Microengineering, École
Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
- Institute
of Materials Science and Engineering, École
Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jiri Sturala
- Department
of Inorganic Chemistry, University of Chemistry
and Technology Prague, Technicka 5, 166 28, Prague 6, Czech Republic
| | - František Hájek
- Institute
of Physics of the Czech Academy of Sciences, v.v.i., Cukrovarnická 10, 162 00, Prague 6, Czech Republic
| | - Vítězslav Jarý
- Institute
of Physics of the Czech Academy of Sciences, v.v.i., Cukrovarnická 10, 162 00, Prague 6, Czech Republic
| | - David Sedmidubský
- Department
of Inorganic Chemistry, University of Chemistry
and Technology Prague, Technicka 5, 166 28, Prague 6, Czech Republic
| | - Kseniia Mosina
- Department
of Inorganic Chemistry, University of Chemistry
and Technology Prague, Technicka 5, 166 28, Prague 6, Czech Republic
| | - Igor Sokolović
- Institute
of Microelectronics, TU Wien, Gußhausstraße 27−29, 1040 Vienna, Austria
- Institute
of Applied Physics, TU Wien, Wiedner Hauptstraße 8−10, 1040 Vienna, Austria
| | - Saeed Rasouli
- Institute
of Applied Physics, TU Wien, Wiedner Hauptstraße 8−10, 1040 Vienna, Austria
| | - Tibor Grasser
- Institute
of Microelectronics, TU Wien, Gußhausstraße 27−29, 1040 Vienna, Austria
| | - Ulrike Diebold
- Institute
of Applied Physics, TU Wien, Wiedner Hauptstraße 8−10, 1040 Vienna, Austria
| | - Andras Kis
- Institute
of Electrical and Microengineering, École
Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
- Institute
of Materials Science and Engineering, École
Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Zdeněk Sofer
- Department
of Inorganic Chemistry, University of Chemistry
and Technology Prague, Technicka 5, 166 28, Prague 6, Czech Republic
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28
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Alsved J, Rezayati Charan M, Ohlsson P, Urbansky A, Augustsson P. Label-free separation of peripheral blood mononuclear cells from whole blood by gradient acoustic focusing. Sci Rep 2024; 14:8748. [PMID: 38627566 PMCID: PMC11021555 DOI: 10.1038/s41598-024-59156-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 04/08/2024] [Indexed: 04/19/2024] Open
Abstract
Efficient techniques for separating target cells from undiluted blood are necessary for various diagnostic and research applications. This paper presents acoustic focusing in dense media containing iodixanol to purify peripheral blood mononuclear cells (PBMCs) from whole blood in a label-free and flow-through format. If the blood is laminated or mixed with iodixanol solutions while passing through the resonant microchannel, all the components (fluids and cells) rearrange according to their acoustic impedances. Red blood cells (RBCs) have higher effective acoustic impedance than PBMCs. Therefore, they relocate to the pressure node despite the dense medium, while PBMCs stay near the channel walls due to their negative contrast factor relative to their surrounding medium. By modifying the medium and thus tuning the contrast factor of the cells, we enriched PBMCs relative to RBCs by a factor of 3600 to 11,000 and with a separation efficiency of 85%. That level of RBC depletion is higher than most other microfluidic methods and similar to that of density gradient centrifugation. The current acoustophoretic chip runs up to 20 µl/min undiluted whole blood and can be integrated with downstream analysis.
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Affiliation(s)
- Julia Alsved
- AcouSort AB, Medicon Village, S-223 81, Lund, Sweden
| | - Mahdi Rezayati Charan
- Department of Biomedical Engineering, Lund University, Ole Römers väg 3, 22363, Lund, Sweden
| | - Pelle Ohlsson
- AcouSort AB, Medicon Village, S-223 81, Lund, Sweden
- Department of Biomedical Engineering, Lund University, Ole Römers väg 3, 22363, Lund, Sweden
| | - Anke Urbansky
- AcouSort AB, Medicon Village, S-223 81, Lund, Sweden
| | - Per Augustsson
- Department of Biomedical Engineering, Lund University, Ole Römers väg 3, 22363, Lund, Sweden.
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29
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Gu H, Gu C, Locker N, Ewing AG. Amperometry and Electron Microscopy show Stress Granules Induce Homotypic Fusion of Catecholamine Vesicles. Angew Chem Int Ed Engl 2024; 63:e202400422. [PMID: 38380500 DOI: 10.1002/anie.202400422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 02/19/2024] [Accepted: 02/20/2024] [Indexed: 02/22/2024]
Abstract
An overreactive stress granule (SG) pathway and long-lived, stable SGs formation are thought to participate in the progress of neurodegenerative diseases (NDs). To understand if and how SGs contribute to disorders of neurotransmitter release in NDs, we examined the interaction between extracellular isolated SGs and vesicles. Amperometry shows that the vesicular content increases and dynamics of vesicle opening slow down after vesicles are treated with SGs, suggesting larger vesicles are formed. Data from transmission electron microscopy (TEM) clearly shows that a portion of large dense-core vesicles (LDCVs) with double/multiple cores appear, thus confirming that SGs induce homotypic fusion between LDCVs. This might be a protective step to help cells to survive following high oxidative stress. A hypothetical mechanism is proposed whereby enriched mRNA or protein in the shell of SGs is likely to bind intrinsically disordered protein (IDP) regions of vesicle associated membrane protein (VAMP) driving a disrupted membrane between two closely buddled vesicles to fuse with each other to form double-core vesicles. Our results show that SGs induce homotypic fusion of LDCVs, providing better understanding of how SGs intervene in pathological processes and opening a new direction to investigations of SGs involved neurodegenerative disease.
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Affiliation(s)
- Hui Gu
- Department of Chemistry and Chemical Engineering, Hunan University of Science and Technology, 411201, Xiangtan, China
- Department of Chemistry and Molecular Biology, University of Gothenburg, 41390, Gothenburg, Sweden
| | - Chaoyi Gu
- Department of Chemistry and Molecular Biology, University of Gothenburg, 41390, Gothenburg, Sweden
| | - Nicolas Locker
- Faculty of Health and Medical Sciences School of Biosciences and Medicine, University of Surrey, GU27XH, Guildford Surrey, UK
| | - Andrew G Ewing
- Department of Chemistry and Molecular Biology, University of Gothenburg, 41390, Gothenburg, Sweden
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30
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Saady A, Malcolm GK, Fitzpatrick MP, Pairault N, Tizzard GJ, Mohammed S, Tavassoli A, Goldup SM. A Platform Approach to Cleavable Macrocycles for the Controlled Disassembly of Mechanically Caged Molecules. Angew Chem Int Ed Engl 2024; 63:e202400344. [PMID: 38276911 DOI: 10.1002/anie.202400344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 01/22/2024] [Accepted: 01/22/2024] [Indexed: 01/27/2024]
Abstract
Inspired by interlocked oligonucleotides, peptides and knotted proteins, synthetic systems where a macrocycle cages a bioactive species that is "switched on" by breaking the mechanical bond have been reported. However, to date, each example uses a bespoke chemical design. Here we present a platform approach to mechanically caged structures wherein a single macrocycle precursor is diversified at a late stage to include a range of trigger units that control ring opening in response to enzymatic, chemical, or photochemical stimuli. We also demonstrate that our approach is applicable to other classes of macrocycles suitable for rotaxane and catenane formation.
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Affiliation(s)
- Abed Saady
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Georgia K Malcolm
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Matthew P Fitzpatrick
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Noel Pairault
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Graham J Tizzard
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Soran Mohammed
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Ali Tavassoli
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Stephen M Goldup
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
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31
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Campos S, Troncoso J, Paredes E. Ultrastructural examination of cryodamage in Paracentrotus lividus eggs during cryopreservation. Sci Rep 2024; 14:8691. [PMID: 38622199 PMCID: PMC11018813 DOI: 10.1038/s41598-024-57905-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 03/22/2024] [Indexed: 04/17/2024] Open
Abstract
This study examinates the challenges of cryopreserving sea urchin (Paracentrotus lividus) eggs, a task hindered by factors like low membrane permeability and high sensitivity to cryoprotective agents (CPAs). While successful cryopreservation has been achieved for some marine invertebrates, eggs remain problematic due to their unique characteristics. The study explores the impact of various CPAs and cryopreservation techniques on sea urchin eggs, employing scanning and transmission electron microscopy to analyze cellular damage. The findings reveal that exposure to low CPA concentrations (0.5 M) did not induce significant damage to eggs. However, high concentrations (3 M) proved highly detrimental. Every cryopreservation approach investigated in this study resulted in irreversible damage to the sea urchin eggs, rendering them nonviable for future use. The research sheds light on the importance of understanding the structural alterations induced by CPAs and cryopreservation methods. This knowledge is essential for refining cryopreservation methods, potentially paving the way for successful preservation of these challenging cells.
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Affiliation(s)
- S Campos
- Centro de Investigación Mariña (CIM), Departamento de Ecoloxía e Bioloxía Animal, Grupo ECOCOST, Universidade de Vigo, 36208, Pontevedra, Spain
| | - J Troncoso
- Centro de Investigación Mariña (CIM), Departamento de Ecoloxía e Bioloxía Animal, Grupo ECOCOST, Universidade de Vigo, 36208, Pontevedra, Spain
| | - E Paredes
- Centro de Investigación Mariña (CIM), Departamento de Ecoloxía e Bioloxía Animal, Grupo ECOCOST, Universidade de Vigo, 36208, Pontevedra, Spain.
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32
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Lopez-Vince E, Wilhelm C, Simon-Yarza T. Vascularized tumor models for the evaluation of drug delivery systems: a paradigm shift. Drug Deliv Transl Res 2024:10.1007/s13346-024-01580-3. [PMID: 38619704 DOI: 10.1007/s13346-024-01580-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/13/2024] [Indexed: 04/16/2024]
Abstract
As the conversion rate of preclinical studies for cancer treatment is low, user-friendly models that mimic the pathological microenvironment and drug intake with high throughput are scarce. Animal models are key, but an alternative to reduce their use would be valuable. Vascularized tumor-on-chip models combine great versatility with scalable throughput and are easy to use. Several strategies to integrate both tumor and vascular compartments have been developed, but few have been used to assess drug delivery. Permeability, intra/extravasation, and free drug circulation are often evaluated, but imperfectly recapitulate the processes at stake. Indeed, tumor targeting and chemoresistance bypass must be investigated to design promising cancer therapeutics. In vitro models that would help the development of drug delivery systems (DDS) are thus needed. They would allow selecting good candidates before animal studies based on rational criteria such as drug accumulation, diffusion in the tumor, and potency, as well as absence of side damage. In this review, we focus on vascularized tumor models. First, we detail their fabrication, and especially the materials, cell types, and coculture used. Then, the different strategies of vascularization are described along with their classical applications in intra/extravasation or free drug assessment. Finally, current trends in DDS for cancer are discussed with an overview of the current efforts in the domain.
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Affiliation(s)
- Elliot Lopez-Vince
- Laboratoire Physico Chimie Curie, PCC, CNRS UMR168, Institut Curie, Sorbonne University, PSL University, 75005, Paris, France
- Université Paris Cité, Université Sorbonne Paris Nord, LVTS Inserm U1148, 75018, Paris, France
| | - Claire Wilhelm
- Laboratoire Physico Chimie Curie, PCC, CNRS UMR168, Institut Curie, Sorbonne University, PSL University, 75005, Paris, France
| | - Teresa Simon-Yarza
- Université Paris Cité, Université Sorbonne Paris Nord, LVTS Inserm U1148, 75018, Paris, France.
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33
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Wu LY, Wijesekara Y, Piedade GJ, Pappas N, Brussaard CPD, Dutilh BE. Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome Biol 2024; 25:97. [PMID: 38622738 PMCID: PMC11020464 DOI: 10.1186/s13059-024-03236-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 04/01/2024] [Indexed: 04/17/2024] Open
Abstract
BACKGROUND As most viruses remain uncultivated, metagenomics is currently the main method for virus discovery. Detecting viruses in metagenomic data is not trivial. In the past few years, many bioinformatic virus identification tools have been developed for this task, making it challenging to choose the right tools, parameters, and cutoffs. As all these tools measure different biological signals, and use different algorithms and training and reference databases, it is imperative to conduct an independent benchmarking to give users objective guidance. RESULTS We compare the performance of nine state-of-the-art virus identification tools in thirteen modes on eight paired viral and microbial datasets from three distinct biomes, including a new complex dataset from Antarctic coastal waters. The tools have highly variable true positive rates (0-97%) and false positive rates (0-30%). PPR-Meta best distinguishes viral from microbial contigs, followed by DeepVirFinder, VirSorter2, and VIBRANT. Different tools identify different subsets of the benchmarking data and all tools, except for Sourmash, find unique viral contigs. Performance of tools improved with adjusted parameter cutoffs, indicating that adjustment of parameter cutoffs before usage should be considered. CONCLUSIONS Together, our independent benchmarking facilitates selecting choices of bioinformatic virus identification tools and gives suggestions for parameter adjustments to viromics researchers.
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Affiliation(s)
- Ling-Yi Wu
- Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands
| | - Yasas Wijesekara
- Institute of Bioinformatics, University Medicine Greifswald, Felix Hausdorff Str. 8, 17475, Greifswald, Germany
| | - Gonçalo J Piedade
- Department Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Den Burg, PO Box 59, Texel, 1790 AB, The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Nikolaos Pappas
- Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands
| | - Corina P D Brussaard
- Department Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Den Burg, PO Box 59, Texel, 1790 AB, The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Bas E Dutilh
- Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands.
- Institute of Biodiversity, Faculty of Biological Sciences, Cluster of Excellence Balance of the Microverse, Friedrich Schiller University Jena, 07743, Jena, Germany.
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Dennis TPW, Essandoh J, Mable BK, Viana MS, Yawson AE, Weetman D. Signatures of adaptation at key insecticide resistance loci in Anopheles gambiae in Southern Ghana revealed by reduced-coverage WGS. Sci Rep 2024; 14:8650. [PMID: 38622230 PMCID: PMC11018624 DOI: 10.1038/s41598-024-58906-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 04/04/2024] [Indexed: 04/17/2024] Open
Abstract
Resistance to insecticides and adaptation to a diverse range of environments present challenges to Anopheles gambiae s.l. mosquito control efforts in sub-Saharan Africa. Whole-genome-sequencing is often employed for identifying the genomic basis underlying adaptation in Anopheles, but remains expensive for large-scale surveys. Reduced coverage whole-genome-sequencing can identify regions of the genome involved in adaptation at a lower cost, but is currently untested in Anopheles mosquitoes. Here, we use reduced coverage WGS to investigate population genetic structure and identify signatures of local adaptation in Anopheles mosquitoes across southern Ghana. In contrast to previous analyses, we find no structuring by ecoregion, with Anopheles coluzzii and Anopheles gambiae populations largely displaying the hallmarks of large, unstructured populations. However, we find signatures of selection at insecticide resistance loci that appear ubiquitous across ecoregions in An. coluzzii, and strongest in forest ecoregions in An. gambiae. Our study highlights resistance candidate genes in this region, and validates reduced coverage WGS, potentially to very low coverage levels, for population genomics and exploratory surveys for adaptation in Anopheles taxa.
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Affiliation(s)
- Tristan P W Dennis
- Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool, UK.
- School of Biodiversity, One Health, and Veterinary Medicine, University of Glasgow, Glasgow, UK.
| | - John Essandoh
- Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool, UK
- Department of Conservation Biology and Entomology, School of Biological Sciences, University of Cape Coast, Cape Coast, Ghana
| | - Barbara K Mable
- School of Biodiversity, One Health, and Veterinary Medicine, University of Glasgow, Glasgow, UK
| | - Mafalda S Viana
- School of Biodiversity, One Health, and Veterinary Medicine, University of Glasgow, Glasgow, UK
| | - Alexander E Yawson
- Department of Biomedical Sciences, School of Allied Health Sciences, University of Cape Coast, Cape Coast, Ghana
| | - David Weetman
- Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool, UK
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35
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Ahrweiler E, Schoetz MD, Singh G, Bindschaedler QP, Sorroche A, Schoenebeck F. Triply Selective & Sequential Diversification at C sp 3: Expansion of Alkyl Germane Reactivity for C-C & C-Heteroatom Bond Formation. Angew Chem Int Ed Engl 2024; 63:e202401545. [PMID: 38386517 DOI: 10.1002/anie.202401545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 02/17/2024] [Accepted: 02/22/2024] [Indexed: 02/24/2024]
Abstract
We report the triply selective and sequential diversification of a single Csp 3 carbon carrying Cl, Bpin and GeEt3 for the modular and programmable construction of sp3-rich molecules. Various functionalizations of Csp 3-Cl and Csp 3-BPin (e.g. alkylation, arylation, homologation, amination, hydroxylation) were tolerated by the Csp 3-GeEt3 group. Moreover, the methodological repertoire of alkyl germane functionalization was significantly expanded beyond the hitherto known Giese addition and arylation to alkynylation, alkenylation, cyanation, halogenation, azidation, C-S bond formation as well as the first demonstration of stereo-selective functionalization of a Csp 3-[Ge] bond.
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Affiliation(s)
- Eric Ahrweiler
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany)
| | - Markus D Schoetz
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany)
| | - Gurdeep Singh
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany)
| | - Quentin P Bindschaedler
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany)
| | - Alba Sorroche
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany)
| | - Franziska Schoenebeck
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany)
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36
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de Haan D, Ramos NH, Meng YF, Rotkopf R, Addadi Y, Rosenhek-Goldian I, Gal A. Decoupling cell size homeostasis in diatoms from the geometrical constraints of the silica cell wall. New Phytol 2024. [PMID: 38622801 DOI: 10.1111/nph.19743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2023] [Accepted: 03/18/2024] [Indexed: 04/17/2024]
Abstract
Unicellular organisms are known to exert tight control over their cell size. In the case of diatoms, abundant eukaryotic microalgae, two opposing notions are widely accepted. On the one hand, the rigid silica cell wall that forms inside the parental cell is thought to enforce geometrical reduction of the cell size. On the other hand, numerous exceptions cast doubt on the generality of this model. Here, we monitored clonal cultures of the diatom Stephanopyxis turris for up to 2 yr, recording the sizes of thousands of cells, in order to follow the distribution of cell sizes in the population. Our results show that S. turris cultures above a certain size threshold undergo a gradual size reduction, in accordance with the postulated geometrical driving force. However, once the cell size reaches a lower threshold, it fluctuates around a constant size using the inherent elasticity of cell wall elements. These results reconcile the disparate observations on cell size regulation in diatoms by showing two distinct behaviors, reduction and homeostasis. The geometrical size reduction is the dominant driving force for large cells, but smaller cells have the flexibility to re-adjust the size of their new cell walls.
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Affiliation(s)
- Diede de Haan
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Nahuel-Hernán Ramos
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Yu-Feng Meng
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Ron Rotkopf
- Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Yoseph Addadi
- Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Irit Rosenhek-Goldian
- Department of Chemical Research Support, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Assaf Gal
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
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37
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Yao X, Vishnu JA, Lupfer C, Hoenders D, Skarsetz O, Chen W, Dattler D, Perrot A, Wang WZ, Gao C, Giuseppone N, Schmid F, Walther A. Scalable Approach to Molecular Motor-Polymer Conjugates for Light-Driven Artificial Muscles. Adv Mater 2024:e2403514. [PMID: 38613525 DOI: 10.1002/adma.202403514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 04/09/2024] [Indexed: 04/15/2024]
Abstract
The integration of molecular machines and motors into materials represents a promising avenue for creating dynamic and functional molecular systems, with potential applications in soft robotics or reconfigurable biomaterials. However, the development of truly scalable and controllable approaches for incorporating molecular motors into polymeric matrices has remained a challenge. Here, it is shown that light-driven molecular motors with sensitive photo-isomerizable double bonds can be converted into initiators for Cu-mediated controlled/living radical polymerization enabling the synthesis of star-shaped motor-polymer conjugates. This approach enables scalability, precise control over the molecular structure, block copolymer structures, and high-end group fidelity. Moreover, it is demonstrated that these materials can be crosslinked to form gels with quasi-ideal network topology, exhibiting light-triggered contraction. The influence of arm length and polymer structure is investigated, and the first molecular dynamics simulation framework to gain deeper insights into the contraction processes is developed. Leveraging this scalable methodology, the creation of bilayer soft robotic devices and cargo-lifting artificial muscles is showcased, highlighting the versatility and potential applications of this advanced polymer chemistry approach. It is anticipated that the integrated experimental and simulation framework will accelerate scalable approaches for active polymer materials based on molecular machines, opening up new horizons in materials science and bioscience.
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Affiliation(s)
- Xuyang Yao
- Life-Like Materials and Systems, Department of Chemistry, University of Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
- SAMS Research Group, Université de Strasbourg, Institut Charles Sadron - CNRS, 23 rue du Loess, BP 84047, 67034, Strasbourg, Cedex 2, France
- Freiburg Institute for Advanced Studies, Freiburg, Germany
- Strasbourg Institute for Advanced Studies, Strasbourg, France
| | - Jude Ann Vishnu
- KOMET 1, Institute of Physics, Johannes Gutenberg University of Mainz, D 55099, Mainz, Germany
| | - Claudius Lupfer
- Life-Like Materials and Systems, Department of Chemistry, University of Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Daniel Hoenders
- Life-Like Materials and Systems, Department of Chemistry, University of Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Oliver Skarsetz
- Life-Like Materials and Systems, Department of Chemistry, University of Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Weixiang Chen
- Life-Like Materials and Systems, Department of Chemistry, University of Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Damien Dattler
- SAMS Research Group, Université de Strasbourg, Institut Charles Sadron - CNRS, 23 rue du Loess, BP 84047, 67034, Strasbourg, Cedex 2, France
| | - Alexis Perrot
- SAMS Research Group, Université de Strasbourg, Institut Charles Sadron - CNRS, 23 rue du Loess, BP 84047, 67034, Strasbourg, Cedex 2, France
| | - Wen-Zhi Wang
- SAMS Research Group, Université de Strasbourg, Institut Charles Sadron - CNRS, 23 rue du Loess, BP 84047, 67034, Strasbourg, Cedex 2, France
| | - Chuan Gao
- SAMS Research Group, Université de Strasbourg, Institut Charles Sadron - CNRS, 23 rue du Loess, BP 84047, 67034, Strasbourg, Cedex 2, France
| | - Nicolas Giuseppone
- SAMS Research Group, Université de Strasbourg, Institut Charles Sadron - CNRS, 23 rue du Loess, BP 84047, 67034, Strasbourg, Cedex 2, France
- Freiburg Institute for Advanced Studies, Freiburg, Germany
- Strasbourg Institute for Advanced Studies, Strasbourg, France
- Institut Universitaire de France (IUF), Paris, 75005, France
| | - Friederike Schmid
- KOMET 1, Institute of Physics, Johannes Gutenberg University of Mainz, D 55099, Mainz, Germany
| | - Andreas Walther
- Life-Like Materials and Systems, Department of Chemistry, University of Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
- Freiburg Institute for Advanced Studies, Freiburg, Germany
- Strasbourg Institute for Advanced Studies, Strasbourg, France
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38
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van der Heijden O, Park S, Vos RE, Eggebeen JJJ, Koper MTM. Tafel Slope Plot as a Tool to Analyze Electrocatalytic Reactions. ACS Energy Lett 2024; 9:1871-1879. [PMID: 38633990 PMCID: PMC11019648 DOI: 10.1021/acsenergylett.4c00266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 03/22/2024] [Accepted: 03/28/2024] [Indexed: 04/19/2024]
Abstract
Kinetic and nonkinetic contributions to the Tafel slope value can be separated using a Tafel slope plot, where a constant Tafel slope region indicates kinetic meaningfulness. Here, we compare the Tafel slope values obtained from linear sweep voltammetry to the values obtained from chronoamperometry and impedance spectroscopy, and we apply the Tafel slope plot to various electrocatalytic reactions. We show that similar Tafel slope values are observed from the different techniques under high-mass-transport conditions for the oxygen evolution reaction on NiFeOOH in 0.2 M KOH. However, for the alkaline hydrogen evolution reaction and the CO2 reduction reaction, no horizontal Tafel slope regions were observed. In contrast, we obtained the expected Tafel slope of 30 mV/dec for the HER on Pt in 1 M HClO4. We argue that widespread application of the Tafel slope plot, or similar numerical differentiation techniques, would result in an improved comparison of kinetic data for many electrocatalytic reactions when the traditional Tafel plot analysis is ambiguous.
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Affiliation(s)
- Onno van der Heijden
- Leiden Institute of Chemistry, Leiden University, 2333 CC Leiden, The Netherlands
| | - Sunghak Park
- Leiden Institute of Chemistry, Leiden University, 2333 CC Leiden, The Netherlands
| | - Rafaël E. Vos
- Leiden Institute of Chemistry, Leiden University, 2333 CC Leiden, The Netherlands
| | - Jordy J. J. Eggebeen
- Leiden Institute of Chemistry, Leiden University, 2333 CC Leiden, The Netherlands
| | - Marc T. M. Koper
- Leiden Institute of Chemistry, Leiden University, 2333 CC Leiden, The Netherlands
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39
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Mathialagan SK, Parreiras SO, Tenorio M, Černa L, Moreno D, Muñiz-Cano B, Navío C, Valvidares M, Valbuena MA, Urgel JI, Gargiani P, Miranda R, Camarero J, Martínez JI, Gallego JM, Écija D. On-Surface Synthesis of Organolanthanide Sandwich Complexes. Adv Sci (Weinh) 2024:e2308125. [PMID: 38610109 DOI: 10.1002/advs.202308125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 02/23/2024] [Indexed: 04/14/2024]
Abstract
The synthesis of lanthanide-based organometallic sandwich compounds is very appealing regarding their potential for single-molecule magnetism. Here, it is exploited by on-surface synthesis to design unprecedented lanthanide-directed organometallic sandwich complexes on Au(111). The reported compounds consist of Dy or Er atoms sandwiched between partially deprotonated hexahydroxybenzene molecules, thus introducing a distinct family of homoleptic organometallic sandwiches based on six-membered ring ligands. Their structural, electronic, and magnetic properties are investigated by scanning tunneling microscopy and spectroscopy, X-ray absorption spectroscopy, X-ray linear and circular magnetic dichroism, and X-ray photoelectron spectroscopy, complemented by density functional theory-based calculations. Both lanthanide complexes self-assemble in close-packed islands featuring a hexagonal lattice. It is unveiled that, despite exhibiting analogous self-assembly, the erbium-based species is magnetically isotropic, whereas the dysprosium-based compound features an in-plane magnetization.
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Affiliation(s)
| | - Sofia O Parreiras
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
| | - Maria Tenorio
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
| | - Lenka Černa
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
- Brno University of Technology, Brno, 60190, Czech Republic
| | - Daniel Moreno
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
| | - Beatriz Muñiz-Cano
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
| | - Cristina Navío
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
| | | | - Miguel A Valbuena
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
| | - José I Urgel
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
- Unidad de Nanomateriales Avanzados, IMDEA Nanoscience, Unidad Asociada al CSIC por el ICMM, Madrid, 28049, Spain
| | | | - Rodolfo Miranda
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
- Departamento de Física de la Materia Condensada and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, Cantoblanco, Madrid, 28049, Spain
| | - Julio Camarero
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
- Departamento de Física de la Materia Condensada and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, Cantoblanco, Madrid, 28049, Spain
| | - José I Martínez
- Instituto de Ciencia de Materiales de Madrid (ICMM), CSIC, Cantoblanco, Madrid, 28049, Spain
| | - José M Gallego
- Instituto de Ciencia de Materiales de Madrid (ICMM), CSIC, Cantoblanco, Madrid, 28049, Spain
| | - David Écija
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanoscience), Madrid, 28049, Spain
- Unidad de Nanomateriales Avanzados, IMDEA Nanoscience, Unidad Asociada al CSIC por el ICMM, Madrid, 28049, Spain
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40
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Slingerland C, Martin NI. Recent Advances in the Development of Polymyxin Antibiotics: 2010-2023. ACS Infect Dis 2024; 10:1056-1079. [PMID: 38470446 PMCID: PMC11019560 DOI: 10.1021/acsinfecdis.3c00630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Revised: 01/24/2024] [Accepted: 01/25/2024] [Indexed: 03/13/2024]
Abstract
The polymyxins are nonribosomal lipopeptides produced by Paenibacillus polymyxa and are potent antibiotics with activity specifically directed against Gram-negative bacteria. While the clinical use of polymyxins has historically been limited due to their toxicity, their use is on the rise given the lack of alternative treatment options for infections due to multidrug resistant Gram-negative pathogens. The Gram-negative specificity of the polymyxins is due to their ability to target lipid A, the membrane embedded LPS anchor that decorates the cell surface of Gram-negative bacteria. Notably, the mechanisms responsible for polymyxin toxicity, and in particular their nephrotoxicity, are only partially understood with most insights coming from studies carried out in the past decade. In parallel, many synthetic and semisynthetic polymyxin analogues have been developed in recent years in an attempt to mitigate the nephrotoxicity of the natural products. Despite these efforts, to date, no polymyxin analogues have gained clinical approval. This may soon change, however, as at the moment there are three novel polymyxin analogues in clinical trials. In this context, this review provides an update of the most recent insights with regard to the structure-activity relationships and nephrotoxicity of new polymyxin variants reported since 2010. We also discuss advances in the synthetic methods used to generate new polymyxin analogues, both via total synthesis and semisynthesis.
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Affiliation(s)
- Cornelis
J. Slingerland
- Biological
Chemistry Group, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands
| | - Nathaniel I. Martin
- Biological
Chemistry Group, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands
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Meng J, Ahamed T, Yu B, Hung W, EI Mouridi S, Wang Z, Zhang Y, Wen Q, Boulin T, Gao S, Zhen M. A tonically active master neuron modulates mutually exclusive motor states at two timescales. Sci Adv 2024; 10:eadk0002. [PMID: 38598630 PMCID: PMC11006214 DOI: 10.1126/sciadv.adk0002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 03/07/2024] [Indexed: 04/12/2024]
Abstract
Continuity of behaviors requires animals to make smooth transitions between mutually exclusive behavioral states. Neural principles that govern these transitions are not well understood. Caenorhabditis elegans spontaneously switch between two opposite motor states, forward and backward movement, a phenomenon thought to reflect the reciprocal inhibition between interneurons AVB and AVA. Here, we report that spontaneous locomotion and their corresponding motor circuits are not separately controlled. AVA and AVB are neither functionally equivalent nor strictly reciprocally inhibitory. AVA, but not AVB, maintains a depolarized membrane potential. While AVA phasically inhibits the forward promoting interneuron AVB at a fast timescale, it maintains a tonic, extrasynaptic excitation on AVB over the longer timescale. We propose that AVA, with tonic and phasic activity of opposite polarities on different timescales, acts as a master neuron to break the symmetry between the underlying forward and backward motor circuits. This master neuron model offers a parsimonious solution for sustained locomotion consisted of mutually exclusive motor states.
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Affiliation(s)
- Jun Meng
- Department of Physiology, University of Toronto, Toronto, ON, Canada
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada
| | - Tosif Ahamed
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada
| | - Bin Yu
- College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Wesley Hung
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada
| | - Sonia EI Mouridi
- University Claude Bernard Lyon 1, MeLiS, CNRS UMR 5284, INSERM U1314, 69008 Lyon, France
| | - Zezhen Wang
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, China
| | - Yongning Zhang
- College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Quan Wen
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, China
| | - Thomas Boulin
- University Claude Bernard Lyon 1, MeLiS, CNRS UMR 5284, INSERM U1314, 69008 Lyon, France
| | - Shangbang Gao
- College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Mei Zhen
- Department of Physiology, University of Toronto, Toronto, ON, Canada
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada
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Askelund AD, Wootton RE, Torvik FA, Lawn RB, Ask H, Corfield EC, Magnus MC, Reichborn-Kjennerud T, Magnus PM, Andreassen OA, Stoltenberg C, Davey Smith G, Davies NM, Havdahl A, Hannigan LJ. Assessing causal links between age at menarche and adolescent mental health: a Mendelian randomisation study. BMC Med 2024; 22:155. [PMID: 38609914 PMCID: PMC11015655 DOI: 10.1186/s12916-024-03361-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 03/18/2024] [Indexed: 04/14/2024] Open
Abstract
BACKGROUND The timing of puberty may have an important impact on adolescent mental health. In particular, earlier age at menarche has been associated with elevated rates of depression in adolescents. Previous research suggests that this relationship may be causal, but replication and an investigation of whether this effect extends to other mental health domains is warranted. METHODS In this Registered Report, we triangulated evidence from different causal inference methods using a new wave of data (N = 13,398) from the Norwegian Mother, Father, and Child Cohort Study. We combined multiple regression, one- and two-sample Mendelian randomisation (MR), and negative control analyses (using pre-pubertal symptoms as outcomes) to assess the causal links between age at menarche and different domains of adolescent mental health. RESULTS Our results supported the hypothesis that earlier age at menarche is associated with elevated depressive symptoms in early adolescence based on multiple regression (β = - 0.11, 95% CI [- 0.12, - 0.09], pone-tailed < 0.01). One-sample MR analyses suggested that this relationship may be causal (β = - 0.07, 95% CI [- 0.13, 0.00], pone-tailed = 0.03), but the effect was small, corresponding to just a 0.06 standard deviation increase in depressive symptoms with each earlier year of menarche. There was also some evidence of a causal relationship with depression diagnoses during adolescence based on one-sample MR (OR = 0.74, 95% CI [0.54, 1.01], pone-tailed = 0.03), corresponding to a 29% increase in the odds of receiving a depression diagnosis with each earlier year of menarche. Negative control and two-sample MR sensitivity analyses were broadly consistent with this pattern of results. Multivariable MR analyses accounting for the genetic overlap between age at menarche and childhood body size provided some evidence of confounding. Meanwhile, we found little consistent evidence of effects on other domains of mental health after accounting for co-occurring depression and other confounding. CONCLUSIONS We found evidence that age at menarche affected diagnoses of adolescent depression, but not other domains of mental health. Our findings suggest that earlier age at menarche is linked to problems in specific domains rather than adolescent mental health in general.
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Affiliation(s)
- Adrian Dahl Askelund
- Department of Psychology, University of Oslo, Oslo, Norway.
- Nic Waals Institute, Lovisenberg Diaconal Hospital, Oslo, Norway.
- PsychGen Centre for Genetic Epidemiology and Mental Health, Norwegian Institute of Public Health, Oslo, Norway.
| | - Robyn E Wootton
- Nic Waals Institute, Lovisenberg Diaconal Hospital, Oslo, Norway
- PsychGen Centre for Genetic Epidemiology and Mental Health, Norwegian Institute of Public Health, Oslo, Norway
- MRC Integrative Epidemiology Unit, Bristol Medical School, University of Bristol, Bristol, UK
- School of Psychological Science, University of Bristol, Bristol, UK
| | - Fartein A Torvik
- Department of Psychology, University of Oslo, Oslo, Norway
- Centre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway
| | - Rebecca B Lawn
- Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, USA
| | - Helga Ask
- PsychGen Centre for Genetic Epidemiology and Mental Health, Norwegian Institute of Public Health, Oslo, Norway
- Promenta Research Center, Department of Psychology, University of Oslo, Oslo, Norway
| | - Elizabeth C Corfield
- Nic Waals Institute, Lovisenberg Diaconal Hospital, Oslo, Norway
- PsychGen Centre for Genetic Epidemiology and Mental Health, Norwegian Institute of Public Health, Oslo, Norway
| | - Maria C Magnus
- Centre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway
| | - Ted Reichborn-Kjennerud
- PsychGen Centre for Genetic Epidemiology and Mental Health, Norwegian Institute of Public Health, Oslo, Norway
- Institute of Clinical Medicine, University of Oslo, Oslo, Norway
| | - Per M Magnus
- Centre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway
| | - Ole A Andreassen
- NORMENT Centre, Institute of Clinical Medicine, University of Oslo, Oslo, Norway
- Division of Mental Health and Addiction, Oslo University Hospital, Oslo, Norway
| | - Camilla Stoltenberg
- Department of Global Public Health and Primary Care, University of Bergen, Bergen, Norway
- NORCE Norwegian Research Centre, Bergen, Norway
| | - George Davey Smith
- MRC Integrative Epidemiology Unit, Bristol Medical School, University of Bristol, Bristol, UK
| | - Neil M Davies
- Division of Psychiatry, University College London, London, UK
- Department of Statistical Sciences, University College London, London, UK
- KG Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Norwegian University of Science and Technology, Trondheim, Norway
| | - Alexandra Havdahl
- Nic Waals Institute, Lovisenberg Diaconal Hospital, Oslo, Norway
- PsychGen Centre for Genetic Epidemiology and Mental Health, Norwegian Institute of Public Health, Oslo, Norway
- MRC Integrative Epidemiology Unit, Bristol Medical School, University of Bristol, Bristol, UK
- Promenta Research Center, Department of Psychology, University of Oslo, Oslo, Norway
| | - Laurie J Hannigan
- Nic Waals Institute, Lovisenberg Diaconal Hospital, Oslo, Norway.
- PsychGen Centre for Genetic Epidemiology and Mental Health, Norwegian Institute of Public Health, Oslo, Norway.
- MRC Integrative Epidemiology Unit, Bristol Medical School, University of Bristol, Bristol, UK.
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Docherty P, Kadarauch M, Mistry N, Phipps RJ. Application of sSPhos as a Chiral Ligand for Palladium-Catalyzed Asymmetric Allylic Alkylation. Org Lett 2024; 26:2862-2866. [PMID: 38147571 PMCID: PMC11020163 DOI: 10.1021/acs.orglett.3c04025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 12/18/2023] [Accepted: 12/20/2023] [Indexed: 12/28/2023]
Abstract
Palladium-catalyzed asymmetric allylic alkylation is a versatile method for C-C bond formation. Many established classes of chiral ligands can perform allylic alkylation reactions enantioselectively, but identification of new ligand classes remains important for future development of the field. We demonstrate that enantiopure sSPhos, a bifunctional chiral monophosphine ligand, when used as its tetrabutyl ammonium salt, is a highly effective ligand for a benchmark Pd-catalyzed allylic alkylation reaction. We explore the scope and limitations and perform experiments to probe the origin of selectivity. In contrast with reactions previously explored using enantiopure sSPhos, it appears that steric bulk around the sulfonate group is responsible for the high enantioselectivity in this case, rather than attractive noncovalent interactions.
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Affiliation(s)
- Philip
J. Docherty
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
| | - Max Kadarauch
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
| | - Nisha Mistry
- Drug
Substance Development, GSK, Stevenage SG1 2NY, U.K.
| | - Robert J. Phipps
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
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Lovett AJ, Kursumovic A, MacManus-Driscoll JL. Lithium Loss in Vacuum Deposited Thin Films. ACS Energy Lett 2024; 9:1753-1758. [PMID: 38633998 PMCID: PMC11019639 DOI: 10.1021/acsenergylett.4c00153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 03/12/2024] [Indexed: 04/19/2024]
Affiliation(s)
- Adam J. Lovett
- Department
of Materials Science and Metallurgy, University
of Cambridge, 27 Charles Babbage Road, Cambridge CB3 0FS, United Kingdom
- Department
of Chemical Engineering, University College
London, Torrington Place, London, United Kingdom, WC1E 7JE
| | - Ahmed Kursumovic
- Department
of Materials Science and Metallurgy, University
of Cambridge, 27 Charles Babbage Road, Cambridge CB3 0FS, United Kingdom
| | - Judith L. MacManus-Driscoll
- Department
of Materials Science and Metallurgy, University
of Cambridge, 27 Charles Babbage Road, Cambridge CB3 0FS, United Kingdom
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Sandoval-Castellanos E, Hare AJ, Lin AT, Dimopoulos EA, Daly KG, Geiger S, Mullin VE, Wiechmann I, Mattiangeli V, Lühken G, Zinovieva NA, Zidarov P, Çakırlar C, Stoddart S, Orton D, Bulatović J, Mashkour M, Sauer EW, Horwitz LK, Horejs B, Atici L, Özkaya V, Mullville J, Parker Pearson M, Mainland I, Card N, Brown L, Sharples N, Griffiths D, Allen D, Arbuckle B, Abell JT, Duru G, Mentzer SM, Munro ND, Uzdurum M, Gülçur S, Buitenhuis H, Gladyr E, Stiner MC, Pöllath N, Özbaşaran M, Krebs S, Burger J, Frantz L, Medugorac I, Bradley DG, Peters J. Ancient mitogenomes from Pre-Pottery Neolithic Central Anatolia and the effects of a Late Neolithic bottleneck in sheep ( Ovis aries). Sci Adv 2024; 10:eadj0954. [PMID: 38608027 PMCID: PMC11014441 DOI: 10.1126/sciadv.adj0954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 03/11/2024] [Indexed: 04/14/2024]
Abstract
Occupied between ~10,300 and 9300 years ago, the Pre-Pottery Neolithic site of Aşıklı Höyük in Central Anatolia went through early phases of sheep domestication. Analysis of 629 mitochondrial genomes from this and numerous sites in Anatolia, southwest Asia, Europe, and Africa produced a phylogenetic tree with excessive coalescences (nodes) around the Neolithic, a potential signature of a domestication bottleneck. This is consistent with archeological evidence of sheep management at Aşıklı Höyük which transitioned from residential stabling to open pasturing over a millennium of site occupation. However, unexpectedly, we detected high genetic diversity throughout Aşıklı Höyük's occupation rather than a bottleneck. Instead, we detected a tenfold demographic bottleneck later in the Neolithic, which caused the fixation of mitochondrial haplogroup B in southwestern Anatolia. The mitochondrial genetic makeup that emerged was carried from the core region of early Neolithic sheep management into Europe and dominates the matrilineal diversity of both its ancient and the billion-strong modern sheep populations.
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Affiliation(s)
- Edson Sandoval-Castellanos
- Population Genomics Group, Department of Veterinary Sciences, LMU Munich, 82152 Martinsried, Germany
- Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, 80539 Munich, Germany
| | - Andrew J. Hare
- Smurfit Institute of Genetics, Trinity College Dublin, Dublin D02 PN40, Ireland
| | - Audrey T. Lin
- The Palaeogenomics and Bio-archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, UK
- Department of Anthropology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560 USA
| | - Evangelos A. Dimopoulos
- The Palaeogenomics and Bio-archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, UK
- Department of Veterinary Medicine, University of Cambridge, Cambridge, UK
| | - Kevin G. Daly
- Smurfit Institute of Genetics, Trinity College Dublin, Dublin D02 PN40, Ireland
- School of Agriculture and Food Science, University College Dublin, Dublin, Ireland
| | - Sheila Geiger
- Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, 80539 Munich, Germany
| | - Victoria E. Mullin
- Smurfit Institute of Genetics, Trinity College Dublin, Dublin D02 PN40, Ireland
| | - Ingrid Wiechmann
- Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, 80539 Munich, Germany
| | - Valeria Mattiangeli
- Smurfit Institute of Genetics, Trinity College Dublin, Dublin D02 PN40, Ireland
| | - Gesine Lühken
- Institute of Animal Breeding and Genetics, Justus Liebig University of Gießen, Ludwigstr. 21, 35390 Gießen, Germany
| | - Natalia A. Zinovieva
- L.K. Ernst Federal Research Centre for Animal Husbandry, Dubrovitsy, Podolsk, Moscow Region, Russia
| | - Petar Zidarov
- Institute of Prehistory, Early History and Medieval Archaeology, Tübingen University, Tübingen, Germany
| | - Canan Çakırlar
- Institute of Archaeology, University of Groningen, 9712 ER Groningen, Netherlands
| | - Simon Stoddart
- Magdalene College, University of Cambridge, Cambridge CB3 0AG, UK
| | - David Orton
- BioArCh, Department of Archaeology, University of York, York YO10 5NG, UK
| | - Jelena Bulatović
- Department of Historical Studies, University of Gothenburg, BOX 200, 40530 Gothenburg, Sweden
| | - Marjan Mashkour
- Unité Archéozoologie, Archéobotanique, Sociétés Pratiques et Environnements (AASPE), CNRS, Muséum National d’Histoire Naturelle, 75020 Paris, France
| | - Eberhard W. Sauer
- School of History, Classics and Archaeology, University of Edinburgh, Old Medical School, Teviot Place, Edinburgh EH8 9AG, UK
| | - Liora Kolska Horwitz
- National Natural History Collections, Faculty of Life Sciences, The Hebrew University, Jerusalem, Israel
| | - Barbara Horejs
- OeAI, Austrian Academy of Sciences and HEAS, University of Vienna, Vienna, Austria
| | - Levent Atici
- Department of Anthropology, University of Nevada, Las Vegas, NV 89154, USA
| | - Vecihi Özkaya
- Department of Archaeology, Dicle University, Diyarbakir, Türkiye
| | - Jacqui Mullville
- School of History, Archaeology and Religion, Cardiff University, Cardiff CF10 3EU, UK
| | | | - Ingrid Mainland
- The University of the Highlands and Islands Orkney, Kirkwall, UK
| | - Nick Card
- The University of the Highlands and Islands Orkney, Kirkwall, UK
| | | | - Niall Sharples
- School of History, Archaeology and Religion, Cardiff University, Cardiff CF10 3EU, UK
| | - David Griffiths
- University of Oxford, OUDCE, Rewley House, Oxford OX1 2JA, UK
| | - David Allen
- Hampshire Cultural Trust, Chilcomb House, Winchester, SO23 8RB, UK
| | - Benjamin Arbuckle
- Department of Anthropology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
| | - Jordan T. Abell
- Department of Geosciences, University of Arizona, Tucson, AZ 85721, USA
| | - Güneş Duru
- Department of Archaeology, Mimar Sinan Fine Arts University, 34381 Şişli/İstanbul, Türkiye
| | - Susan M. Mentzer
- Senckenberg Centre for Human Evolution and Palaeoenvironment, Institute for Archaeological Sciences, Department of Geosciences, Tübingen University, 72074 Tübingen, Germany
| | - Natalie D. Munro
- Department of Anthropology, University of Connecticut, Storrs, CT 06269, USA
| | - Melis Uzdurum
- Department of Archaeology, Ondokuz Mayıs University, 55270 Atakum/Samsun, Türkiye
| | - Sevil Gülçur
- Prehistory Department, Faculty of Letters, Istanbul University, 34134 Istanbul, Türkiye
| | | | - Elena Gladyr
- L.K. Ernst Federal Research Centre for Animal Husbandry, Dubrovitsy, Podolsk, Moscow Region, Russia
| | - Mary C. Stiner
- School of Anthropology, University of Arizona, Tucson, AZ 85721, USA
| | - Nadja Pöllath
- Bavarian Natural History Collections, State Collection of Palaeoanatomy Munich, 80333 Munich, Germany
- ArchaeoBioCenter, LMU Munich, 80539 Munich, Germany
| | - Mihriban Özbaşaran
- Prehistory Department, Faculty of Letters, Istanbul University, 34134 Istanbul, Türkiye
| | - Stefan Krebs
- Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, Feodor-Lynen-Straße 25, 81377 Munich, Germany
| | - Joachim Burger
- Institute of Organismic and Molecular Evolution (iomE), Johannes Gutenberg University Mainz, 55128 Mainz, Germany
| | - Laurent Frantz
- Palaeogenomics Group, Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, 80539 Munich, Germany
- School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK
| | - Ivica Medugorac
- Population Genomics Group, Department of Veterinary Sciences, LMU Munich, 82152 Martinsried, Germany
- ArchaeoBioCenter, LMU Munich, 80539 Munich, Germany
| | - Daniel G. Bradley
- Smurfit Institute of Genetics, Trinity College Dublin, Dublin D02 PN40, Ireland
| | - Joris Peters
- Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, 80539 Munich, Germany
- Bavarian Natural History Collections, State Collection of Palaeoanatomy Munich, 80333 Munich, Germany
- ArchaeoBioCenter, LMU Munich, 80539 Munich, Germany
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Gomez-Cruz C, Fernandez-de la Torre M, Lachowski D, Prados-de-Haro M, Del Río Hernández AE, Perea G, Muñoz-Barrutia A, Garcia-Gonzalez D. Mechanical and Functional Responses in Astrocytes under Alternating Deformation Modes Using Magneto-Active Substrates. Adv Mater 2024:e2312497. [PMID: 38610101 DOI: 10.1002/adma.202312497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 03/21/2024] [Indexed: 04/14/2024]
Abstract
This work introduces NeoMag, a system designed to enhance cell mechanics assays in substrate deformation studies. NeoMag uses multidomain magneto-active materials to mechanically actuate the substrate, transmitting reversible mechanical cues to cells. The system boasts full flexibility in alternating loading substrate deformation modes, seamlessly adapting to both upright and inverted microscopes. The multidomain substrates facilitate mechanobiology assays on 2D and 3D cultures. The integration of the system with nanoindenters allows for precise evaluation of cellular mechanical properties under varying substrate deformation modes. The system is used to study the impact of substrate deformation on astrocytes, simulating mechanical conditions akin to traumatic brain injury and ischemic stroke. The results reveal local heterogeneous changes in astrocyte stiffness, influenced by the orientation of subcellular regions relative to substrate strain. These stiffness variations, exceeding 50% in stiffening and softening, and local deformations significantly alter calcium dynamics. Furthermore, sustained deformations induce actin network reorganization and activate Piezo1 channels, leading to an initial increase followed by a long-term inhibition of calcium events. Conversely, fast and dynamic deformations transiently activate Piezo1 channels and disrupt the actin network, causing long-term cell softening. These findings unveil mechanical and functional alterations in astrocytes during substrate deformation, illustrating the multiple opportunities this technology offers.
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Affiliation(s)
- Clara Gomez-Cruz
- Department of Continuum Mechanics and Structural Analysis, Universidad Carlos III de Madrid, Avda. de la Universidad 30, 28911, Leganés, Madrid, Spain
- Departamento de Bioingeniería, Universidad Carlos III de Madrid, Avda. de la Universidad 30, 28911, Leganés, Madrid, Spain
| | - Miguel Fernandez-de la Torre
- Department of Continuum Mechanics and Structural Analysis, Universidad Carlos III de Madrid, Avda. de la Universidad 30, 28911, Leganés, Madrid, Spain
| | - Dariusz Lachowski
- Department of Continuum Mechanics and Structural Analysis, Universidad Carlos III de Madrid, Avda. de la Universidad 30, 28911, Leganés, Madrid, Spain
- Cellular and Molecular Biomechanics Laboratory, Department of Bioengineering, Imperial College London, London, SW7 2AZ, UK
| | - Martin Prados-de-Haro
- Department of Continuum Mechanics and Structural Analysis, Universidad Carlos III de Madrid, Avda. de la Universidad 30, 28911, Leganés, Madrid, Spain
| | - Armando E Del Río Hernández
- Cellular and Molecular Biomechanics Laboratory, Department of Bioengineering, Imperial College London, London, SW7 2AZ, UK
| | - Gertrudis Perea
- Department of Functional and Systems Neurobiology, Instituto Cajal, CSIC, Av. Doctor Arce, 37., 28002, Leganés, Madrid, Spain
| | - Arrate Muñoz-Barrutia
- Departamento de Bioingeniería, Universidad Carlos III de Madrid, Avda. de la Universidad 30, 28911, Leganés, Madrid, Spain
- Área de Ingeniería Biomédica, Instituto de Investigación Sanitaria Gregorio Marañón, Calle del Doctor Esquerdo 46, Leganés, Madrid, ES28007, Spain
- Department of Chemical and Biomolecular Engineering, Johns Hopkins University, 3400 N Charles St, Baltimore, Maryland, 21218, USA
| | - Daniel Garcia-Gonzalez
- Department of Continuum Mechanics and Structural Analysis, Universidad Carlos III de Madrid, Avda. de la Universidad 30, 28911, Leganés, Madrid, Spain
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Matteini F, Montserrat-Vazquez S, Florian MC. Rejuvenating aged stem cells: therapeutic strategies to extend health and lifespan. FEBS Lett 2024. [PMID: 38604982 DOI: 10.1002/1873-3468.14865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 02/03/2024] [Accepted: 03/07/2024] [Indexed: 04/13/2024]
Abstract
Aging is associated with a global decline in stem cell function. To date, several strategies have been proposed to rejuvenate aged stem cells: most of these result in functional improvement of the tissue where the stem cells reside, but the impact on the lifespan of the whole organism has been less clearly established. Here, we review some of the most recent work dealing with interventions that improve the regenerative capacity of aged somatic stem cells in mammals and that might have important translational possibilities. Overall, we underscore that somatic stem cell rejuvenation represents a strategy to improve tissue homeostasis upon aging and present some recent approaches with the potential to affect health span and lifespan of the whole organism.
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Affiliation(s)
- Francesca Matteini
- Stem Cell Aging Group, Regenerative Medicine Program, The Bellvitge Institute for Biomedical Research (IDIBELL), Barcelona, Spain
- Program for Advancing the Clinical Translation of Regenerative Medicine of Catalonia (P-CMR[C]), Barcelona, Spain
| | - Sara Montserrat-Vazquez
- Stem Cell Aging Group, Regenerative Medicine Program, The Bellvitge Institute for Biomedical Research (IDIBELL), Barcelona, Spain
- Program for Advancing the Clinical Translation of Regenerative Medicine of Catalonia (P-CMR[C]), Barcelona, Spain
| | - M Carolina Florian
- Stem Cell Aging Group, Regenerative Medicine Program, The Bellvitge Institute for Biomedical Research (IDIBELL), Barcelona, Spain
- Program for Advancing the Clinical Translation of Regenerative Medicine of Catalonia (P-CMR[C]), Barcelona, Spain
- Center for Networked Biomedical Research on Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid, Spain
- The Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain
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Walhovd KB, Krogsrud SK, Amlien IK, Sørensen Ø, Wang Y, Bråthen ACS, Overbye K, Kransberg J, Mowinckel AM, Magnussen F, Herud M, Håberg AK, Fjell AM, Vidal-Pineiro D. Fetal influence on the human brain through the lifespan. eLife 2024; 12:RP86812. [PMID: 38602745 PMCID: PMC11008813 DOI: 10.7554/elife.86812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2024] Open
Abstract
Human fetal development has been associated with brain health at later stages. It is unknown whether growth in utero, as indexed by birth weight (BW), relates consistently to lifespan brain characteristics and changes, and to what extent these influences are of a genetic or environmental nature. Here we show remarkably stable and lifelong positive associations between BW and cortical surface area and volume across and within developmental, aging and lifespan longitudinal samples (N = 5794, 4-82 y of age, w/386 monozygotic twins, followed for up to 8.3 y w/12,088 brain MRIs). In contrast, no consistent effect of BW on brain changes was observed. Partly environmental effects were indicated by analysis of twin BW discordance. In conclusion, the influence of prenatal growth on cortical topography is stable and reliable through the lifespan. This early-life factor appears to influence the brain by association of brain reserve, rather than brain maintenance. Thus, fetal influences appear omnipresent in the spacetime of the human brain throughout the human lifespan. Optimizing fetal growth may increase brain reserve for life, also in aging.
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Affiliation(s)
- Kristine B Walhovd
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
- Computational Radiology and Artificial Intelligence, Department of Radiology and Nuclear Medicine, Oslo University HospitalOsloNorway
| | - Stine K Krogsrud
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
| | - Inge K Amlien
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
| | - Øystein Sørensen
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
| | - Yunpeng Wang
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
| | | | - Knut Overbye
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
| | - Jonas Kransberg
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
| | | | - Fredrik Magnussen
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
| | - Martine Herud
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
| | - Asta K Håberg
- Department of Neuromedicine and Movement Science, Faculty of Medicine and Health Sciences, Norwegian University of Science and TechnologyOsloNorway
| | - Anders Martin Fjell
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
- Computational Radiology and Artificial Intelligence, Department of Radiology and Nuclear Medicine, Oslo University HospitalOsloNorway
| | - Didac Vidal-Pineiro
- Center for Lifespan Changes in Brain and Cognition, University of OsloOsloNorway
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Abubshait A, Perez-Osorio J, De Tommaso D, Wykowska A. Temporal interplay between cognitive conflict and attentional markers in social collaboration. Psychophysiology 2024:e14587. [PMID: 38600626 DOI: 10.1111/psyp.14587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 03/28/2024] [Accepted: 03/29/2024] [Indexed: 04/12/2024]
Abstract
Cognitive processes deal with contradictory demands in social contexts. On the one hand, social interactions imply a demand for cooperation, which requires processing social signals, and on the other, demands for selective attention require ignoring irrelevant signals, to avoid overload. We created a task with a humanoid robot displaying irrelevant social signals, imposing conflicting demands on selective attention. Participants interacted with the robot as a team (high social demand; n = 23) or a passive co-actor (low social demand; n = 19). We observed that theta oscillations indexed conflict processing of social signals. Subsequently, alpha oscillations were sensitive to the conflicting social signals and the mode of interaction. These findings suggest that brains have distinct mechanisms for dealing with the complexity of social interaction and that these mechanisms are activated differently depending on the mode of the interaction. Thus, how we process environmental stimuli depends on the beliefs held regarding our social context.
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Affiliation(s)
- Abdulaziz Abubshait
- S4HRI: Social Cognition in Human-Robot Interaction, Italian Institute of Technology, Genova, Italy
| | - Jairo Perez-Osorio
- S4HRI: Social Cognition in Human-Robot Interaction, Italian Institute of Technology, Genova, Italy
- Cognitive Psychology & Ergonomics, Technische Universität Berlin, Berlin, Germany
| | - Davide De Tommaso
- S4HRI: Social Cognition in Human-Robot Interaction, Italian Institute of Technology, Genova, Italy
| | - Agnieszka Wykowska
- S4HRI: Social Cognition in Human-Robot Interaction, Italian Institute of Technology, Genova, Italy
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Bruce M, Lusthaus J, Kashyap R, Phair N, Varese F. Mapping the global geography of cybercrime with the World Cybercrime Index. PLoS One 2024; 19:e0297312. [PMID: 38598553 PMCID: PMC11006133 DOI: 10.1371/journal.pone.0297312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 01/03/2024] [Indexed: 04/12/2024] Open
Abstract
Cybercrime is a major challenge facing the world, with estimated costs ranging from the hundreds of millions to the trillions. Despite the threat it poses, cybercrime is somewhat an invisible phenomenon. In carrying out their virtual attacks, offenders often mask their physical locations by hiding behind online nicknames and technical protections. This means technical data are not well suited to establishing the true location of offenders and scholarly knowledge of cybercrime geography is limited. This paper proposes a solution: an expert survey. From March to October 2021 we invited leading experts in cybercrime intelligence/investigations from across the world to participate in an anonymized online survey on the geographical location of cybercrime offenders. The survey asked participants to consider five major categories of cybercrime, nominate the countries that they consider to be the most significant sources of each of these types of cybercrimes, and then rank each nominated country according to the impact, professionalism, and technical skill of its offenders. The outcome of the survey is the World Cybercrime Index, a global metric of cybercriminality organised around five types of cybercrime. The results indicate that a relatively small number of countries house the greatest cybercriminal threats. These findings partially remove the veil of anonymity around cybercriminal offenders, may aid law enforcement and policymakers in fighting this threat, and contribute to the study of cybercrime as a local phenomenon.
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Affiliation(s)
- Miranda Bruce
- Department of Sociology, University of Oxford, Oxford, United Kingdom
- Canberra School of Professional Studies, University of New South Wales, Canberra, Australia
| | - Jonathan Lusthaus
- Department of Sociology, University of Oxford, Oxford, United Kingdom
- Oxford School of Global and Area Studies, University of Oxford, Oxford, United Kingdom
| | - Ridhi Kashyap
- Department of Sociology, University of Oxford, Oxford, United Kingdom
- Leverhulme Centre for Demographic Science, University of Oxford, Oxford, United Kingdom
| | - Nigel Phair
- Department of Software Systems and Cybersecurity, Faculty of IT, Monash University, Victoria, Australia
| | - Federico Varese
- Centre d’études européennes et de politique comparée, Sciences Po, Paris, France
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