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Yang B, Li J, Yan J, Zhang K, Ouyang Z, Lu Y, Wei H, Li Q, Yao X, Lu S, Hong Y, Wang X, Guo L. Non-specific phospholipase C4 hydrolyzes phosphosphingolipids and phosphoglycerolipids and promotes rapeseed growth and yield. J Integr Plant Biol 2023; 65:2421-2436. [PMID: 37642157 DOI: 10.1111/jipb.13560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Accepted: 08/28/2023] [Indexed: 08/31/2023]
Abstract
Phosphorus is a major nutrient vital for plant growth and development, with a substantial amount of cellular phosphorus being used for the biosynthesis of membrane phospholipids. Here, we report that NON-SPECIFIC PHOSPHOLIPASE C4 (NPC4) in rapeseed (Brassica napus) releases phosphate from phospholipids to promote growth and seed yield, as plants with altered NPC4 levels showed significant changes in seed production under different phosphate conditions. Clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated nuclease 9 (Cas9)-mediated knockout of BnaNPC4 led to elevated accumulation of phospholipids and decreased growth, whereas overexpression (OE) of BnaNPC4 resulted in lower phospholipid contents and increased plant growth and seed production. We demonstrate that BnaNPC4 hydrolyzes phosphosphingolipids and phosphoglycerolipids in vitro, and plants with altered BnaNPC4 function displayed changes in their sphingolipid and glycerolipid contents in roots, with a greater change in glycerolipids than sphingolipids in leaves, particularly under phosphate deficiency conditions. In addition, BnaNPC4-OE plants led to the upregulation of genes involved in lipid metabolism, phosphate release, and phosphate transport and an increase in free inorganic phosphate in leaves. These results indicate that BnaNPC4 hydrolyzes phosphosphingolipids and phosphoglycerolipids in rapeseed to enhance phosphate release from membrane phospholipids and promote growth and seed production.
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Affiliation(s)
- Bao Yang
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Jianwu Li
- Department of Biology, University of Missouri, St. Louis, MO, 63121, USA
- Donald Danforth Plant Science Center, St. Louis, MO, 63132, USA
| | - Jiayu Yan
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Ke Zhang
- Department of Biology, University of Missouri, St. Louis, MO, 63121, USA
- Donald Danforth Plant Science Center, St. Louis, MO, 63132, USA
| | - Zhewen Ouyang
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yefei Lu
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Huili Wei
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Qing Li
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
- Yazhouwan National Laboratory, Sanya, 572025, China
| | - Xuan Yao
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
- Yazhouwan National Laboratory, Sanya, 572025, China
| | - Shaoping Lu
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yueyun Hong
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Xuemin Wang
- Department of Biology, University of Missouri, St. Louis, MO, 63121, USA
- Donald Danforth Plant Science Center, St. Louis, MO, 63132, USA
| | - Liang Guo
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
- Yazhouwan National Laboratory, Sanya, 572025, China
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Huang Y, Schnurbusch T. Femaleness for improving grain yield potential and hybrid production in barley. J Exp Bot 2023; 74:4896-4898. [PMID: 37702015 PMCID: PMC10498018 DOI: 10.1093/jxb/erad257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/14/2023]
Abstract
This article comments on:
Selva C, Yang X, Shirley NJ, Whitford R, Baumann U, Tucker MR. 2023. HvSL1 and HvMADS16 promote stamen identity to restrict multiple ovary formation in barley. Journal of Experimental Botany 74, 5039–5057.
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Affiliation(s)
- Yongyu Huang
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben, D-06466 Seeland, Germany
| | - Thorsten Schnurbusch
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben, D-06466 Seeland, Germany
- Martin Luther University Halle-Wittenberg, Faculty of Natural Sciences III, Institute of Agricultural and Nutritional Sciences, D-06120 Halle, Germany
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Recek N, Zaplotnik R, Vesel A, Primc G, Gselman P, Mozetič M, Holc M. Germination and Growth of Plasma-Treated Maize Seeds Planted in Fields and Exposed to Realistic Environmental Conditions. Int J Mol Sci 2023; 24:6868. [PMID: 37047840 PMCID: PMC10094815 DOI: 10.3390/ijms24076868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 03/30/2023] [Accepted: 04/03/2023] [Indexed: 04/14/2023] Open
Abstract
In this study, we applied an inductively coupled, radio frequency oxygen plasma to maize seeds and investigated its effects on seedling emergence, plant number at tasseling, and crop yield of maize in realistic field conditions. Maize seeds of seven different hybrids were treated over two harvest years. In addition to plasma-treated seeds, a control sample, fungicide-treated seeds, an eco-layer, and a plasma and eco-layer combination, were planted. Seedling emergence, plant number at tasseling (plants/m2), and yield (kg/ha), were recorded. In the first harvest year, results were negatively affected by the presence of an insect pest. In the second harvest year, plant number and yield results were more uniform. In both years, for two and three hybrids, respectively, the highest yield arose from plants from plasma-treated seeds, but the differences were only partially significant. Considering our results, plasma treatment of maize seeds appears to have a positive effect on the yield of the plant.
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Affiliation(s)
- Nina Recek
- Jožef Stefan Institute, Jamova Cesta 39, 1000 Ljubljana, Slovenia
| | - Rok Zaplotnik
- Jožef Stefan Institute, Jamova Cesta 39, 1000 Ljubljana, Slovenia
| | - Alenka Vesel
- Jožef Stefan Institute, Jamova Cesta 39, 1000 Ljubljana, Slovenia
| | - Gregor Primc
- Jožef Stefan Institute, Jamova Cesta 39, 1000 Ljubljana, Slovenia
| | | | - Miran Mozetič
- Jožef Stefan Institute, Jamova Cesta 39, 1000 Ljubljana, Slovenia
| | - Matej Holc
- Jožef Stefan Institute, Jamova Cesta 39, 1000 Ljubljana, Slovenia
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Ali MF, Brown P, Thomas J, Salmerόn M, Kawashima T. Effect of assimilate competition during early seed development on the pod and seed growth traits in soybean. Plant Reprod 2022; 35:179-188. [PMID: 35235027 DOI: 10.1007/s00497-022-00439-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 02/10/2022] [Indexed: 06/14/2023]
Abstract
Although the seed remains small in size during the initial stage of seed development (the lag phase), several studies indicate that environment and assimilate supply level manipulations during the lag phase affect the final seed size. However, the manipulations were not only at the lag phase, making it difficult to understand the specific role of the lag phase in final seed size determination. It also remained unclear whether environmental cues are sensed by plants and regulate seed development or if it is simply the assimilate supply level, changed by the environment, that affects the subsequent seed development. We investigated soybean (Glycine max L. Merr.) seed phenotypes grown in a greenhouse using different source-sink manipulations (shading and removal of flowers and pods) during the lag phase. We show that assimilate supply is the key factor controlling flower and pod abortion and that the assimilate supply during the lag phase affects the subsequent potential seed growth rate during the seed filling phase. In response to low assimilate supply, plants adjust flower/pod abortion and lag phase duration to supply the minimum assimilate per pod/seed. Our results provide insight into the mechanisms whereby the lag phase is crucial for seed development and final seed size potential, essential parameters that determine yield.
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Affiliation(s)
- Mohammad Foteh Ali
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA
| | - Paige Brown
- Medical Laboratory Science Program, University of Kentucky, Lexington, KY, 40526, USA
| | - John Thomas
- Agricultural and Medical Biotechnology Program, University of Kentucky, Lexington, KY, 40546, USA
| | - Montserrat Salmerόn
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA.
| | - Tomokazu Kawashima
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA.
- Agricultural and Medical Biotechnology Program, University of Kentucky, Lexington, KY, 40546, USA.
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Gadissa F, Kassaye Z, Abiyu S. Assessment of the Effects of Seed Storage Time on Germination Rate and Performance Evaluation of Ethiopian Faba Bean ( Vicia faba L.) Varieties for Yield and Related Traits. ScientificWorldJournal 2022; 2022:6338939. [PMID: 35571272 PMCID: PMC9098359 DOI: 10.1155/2022/6338939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 03/01/2022] [Accepted: 03/05/2022] [Indexed: 11/18/2022] Open
Abstract
In Ethiopia, faba bean (Vicia faba L.) varieties are important and widely used as a source of food and cash source to large number of subsistence farmers. However, their production and productivity is below the world's average partly because of lack of their sustainable performance in the current scenario of climate change. Therefore, the present study was designed to test the effects of seed storage time and to evaluate the performance of 31 faba bean varieties collected from Holeta, Kulumsa and Sinana agricultural research systems, Ethiopia. The study involved germination test and field experiment that was laid out using randomized complete block design (RCBD) and conducted at multiple test locations. Data were collected on qualitative and quantitative traits and analyzed using SAS version 9.0, and MINITAB® Release 19. Accordingly, most of the varieties showed a promising germination rate regardless of their storage duration suggesting their sustainable performance under suitable storage conditions. Most of the qualitative and quantitative traits showed a wide range of variations revealing their stable performance and better chance for further improvement. Analysis of variance also revealed a highly significant (p < 0.001) variation for several of the traits suggesting maintenance of the original diversity that could be important in further selection breeding. Likewise, high genetic advance coupled with high heritability and genotypic coefficient of variation together with wide range of variations in both PCV and GCV observed in several of the quantitative traits suggest their sustainable performance and significance in further effective selection. Moreover, a promising high yielding varieties such as Dida1, Welki, Hachalu, Ashebeka and Obse have been identified for further use. Clustering grouped the varieties into three clusters implying significant amount of genetic variability among them. Overall, the results generated could be used as a baseline information for improving faba bean production and productivity. However, to exploit more and determine the actual performance of the varieties more markers such as molecular markers (DNA based) are recommended.
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Affiliation(s)
| | | | - Solomon Abiyu
- Madda Walabu University, POB–247, Bale Robe, Ethiopia
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Feng L, Su Q, Yue H, Wang L, Gao J, Xing L, Xu M, Zhou C, Yang Y, Zhou B. TIP41L, a putative candidate gene conferring both seed size and boll weight, was fine-mapped in an introgression line of Gossypium hirsutum-Gossypium arboreum. Plant Sci 2022; 317:111197. [PMID: 35193746 DOI: 10.1016/j.plantsci.2022.111197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2021] [Revised: 01/12/2022] [Accepted: 01/22/2022] [Indexed: 06/14/2023]
Abstract
QTLs for yield-related traits in tetraploid cotton have been widely mapped, but QTLs introduced from diploid species into tetraploid cotton background remain uninvolved. Here, a stable introgression line with the traits of small boll and seed on Chr. A12, IL197 derived from Gossypium hirsutum (2n = AADD = 52) × Gossypium arboreum (2n = AA = 26), was employed to construct the F2 and F3 secondary populations for fine-mapping QTLs of yield-related traits. QTL analysis showed eight QTLs were detected for three traits, boll weight (BW), seed index (SI, one-hundred-seed weight in g), and lint percentage, with 3.94-28.13 % of the phenotypic variance explained. Of them, a stable major QTL, q(BW + SI)-A12-1 controlling both BW and SI and covering the shortest region in Chr. A12, was further narrowed into a 60.09 kb-interval through substitution mapping. Finally, five candidate genes were detected in the interval. The qRT-PCR analysis revealed only TIP41-like family protein (TIP41L) kept up-regulated expression and significantly lower in TM-1 than that in IL197 from -1 DPA to 15 DPA during cotton boll rapid developmental stage. Therefore, TIP41L gene is speculated as the most likely candidate gene. Comparative analysis with the other four allotetraploid species showed TIP41L gene was probably diverged after the formation of allotetraploid cotton, which may be selected and swept during domestication of modern upland cotton because small boll and seed are detrimental to fibre yield of cotton. This research would lay a solid foundation for further elucidating the molecular mechanism of cotton boll and seed development.
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Affiliation(s)
- Liuchun Feng
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China; Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, People's Republic of China
| | - Qiao Su
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China
| | - Haoran Yue
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China
| | - Liang Wang
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China
| | - Jianbo Gao
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China
| | - Liangshuai Xing
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China
| | - Min Xu
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China
| | - Chenhui Zhou
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China
| | - Ying Yang
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China
| | - Baoliang Zhou
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, People's Republic of China.
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Abstract
The entire process of embryo development is under the tight control of various transcription factors. Together with other proteins, they act in a combinatorial manner and control distinct events during embryo development. Seed development is a complex process that proceeds through sequences of events regulated by the interplay of various genes, prominent among them being the transcription factors (TFs). The members of WOX, HD-ZIP III, ARF, and CUC families have a preferential role in embryonic patterning. While WOX TFs are required for initiating body axis, HD-ZIP III TFs and CUCs establish bilateral symmetry and SAM. And ARF5 performs a major role during embryonic root, ground tissue, and vasculature development. TFs such as LEC1, ABI3, FUS3, and LEC2 (LAFL) are considered the master regulators of seed maturation. Furthermore, several new TFs involved in seed storage reserves and dormancy have been identified in the last few years. Their association with those master regulators has been established in the model plant Arabidopsis. Also, using chromatin immunoprecipitation (ChIP) assay coupled with transcriptomics, genome-wide target genes of these master regulators have recently been proposed. Many seed-specific genes, including those encoding oleosins and albumins, have appeared as the direct target of LAFL. Also, several other TFs act downstream of LAFL TFs and perform their function during maturation. In this review, the function of different TFs in different phases of early embryogenesis and maturation is discussed in detail, including information about their genetic and molecular interactors and target genes. Such knowledge can further be leveraged to understand and manipulate the regulatory mechanisms involved in seed development. In addition, the genomics approaches and their utilization to identify TFs aiming to study embryo development are discussed.
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Affiliation(s)
- Subodh Verma
- Mendel Centre for Genomics and Proteomics of Plants Systems, CEITEC MU - Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Venkata Pardha Saradhi Attuluri
- Mendel Centre for Genomics and Proteomics of Plants Systems, CEITEC MU - Central European Institute of Technology, Masaryk University, Brno, Czech Republic
| | - Hélène S. Robert
- Mendel Centre for Genomics and Proteomics of Plants Systems, CEITEC MU - Central European Institute of Technology, Masaryk University, Brno, Czech Republic
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Zhang A, Jin L, Yarra R, Cao H, Chen P, John Martin JJ. Transcriptome analysis reveals key developmental and metabolic regulatory aspects of oil palm (Elaeis guineensis Jacq.) during zygotic embryo development. BMC Plant Biol 2022; 22:112. [PMID: 35279075 PMCID: PMC8917659 DOI: 10.1186/s12870-022-03459-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 02/07/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Oil palm is the most efficient oil-producing crop in the world, and the yield of palm oil is associated with embryonic development. However, a comprehensive understanding of zygotic embryo development at the molecular level remains elusive. In order to address this issue, we report the transcriptomic analysis of zygotic embryo development in oil palm, specifically focusing on regulatory genes involved in important biological pathways. RESULTS In this study, three cDNA libraries were prepared from embryos at S1 (early-stage), S2 (middle-stage), and S3 (late-stage). There were 16,367, 16,500, and 18,012 genes characterized at the S1, S2, and S3 stages of embryonic development, respectively. A total of 1522, 2698, and 142 genes were differentially expressed in S1 vs S2, S1 vs S3, and S2 vs S3, respectively. Using Gene Ontology (GO) term enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis to identify key genes and pathways. In the hormone signaling pathway, genes related to auxin antagonize the output of cytokinin which regulates the development of embryo meristem. The genes related to abscisic acid negatively regulating the synthesis of gibberellin were strongly up-regulated in the mid-late stage of embryonic development. The results were reported the early synthesis and mid-late degradation of sucrose, as well as the activation of the continuous degradation pathway of temporary starch, providing the nutrients needed for differentiation of the embryonic cell. Moreover, the transcripts of genes involved in fatty acid synthesis were also abundantly accumulated in the zygotic embryos. CONCLUSION Taken together, our research provides a new perspective on the developmental and metabolic regulation of zygotic embryo development at the transcriptional level in oil palm.
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Affiliation(s)
- Anni Zhang
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, College of Horticulture, Hainan University, Haikou, 570228, China
| | - Longfei Jin
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences / Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang, 571339, China
| | - Rajesh Yarra
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences / Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang, 571339, China
| | - Hongxing Cao
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences / Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang, 571339, China
| | - Ping Chen
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, College of Horticulture, Hainan University, Haikou, 570228, China.
| | - Jerome Jeyakumar John Martin
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences / Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang, 571339, China.
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Zafar S, Perveen S, Kamran Khan M, Shaheen MR, Hussain R, Sarwar N, Rashid S, Nafees M, Farid G, Alamri S, Shah AA, Javed T, Irfan M, Siddiqui MH. Effect of zinc nanoparticles seed priming and foliar application on the growth and physio-biochemical indices of spinach (Spinacia oleracea L.) under salt stress. PLoS One 2022; 17:e0263194. [PMID: 35192615 PMCID: PMC8863234 DOI: 10.1371/journal.pone.0263194] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 01/13/2022] [Indexed: 12/18/2022] Open
Abstract
Salt stress is the major risk to the seed germination and plant growth via affecting physiological and biochemical activities in plants. Zinc nanoparticles (ZnNPs) are emerged as a key agent in regulating the tolerance mechanism in plants under environmental stresses. However, the tolerance mechanisms which are regulated by ZnNPs in plants are still not fully understood. Therefore, the observation was planned to explore the role of ZnNPs (applied as priming and foliar) in reducing the harmful influence of sodium chloride (NaCl) stress on the development of spinach (Spinacia oleracea L.) plants. Varying concentrations of ZnNPs (0.1%, 0.2% & 0.3%) were employed to the spinach as seed priming and foliar, under control as well as salt stress environment. The alleviation of stress was observed in ZnNPs-applied spinach plants grown under salt stress, with a reduced rise in the concentration hydrogen peroxide, melondialdehyde and anthocyanin contents. A clear decline in soluble proteins, chlorophyll contents, ascorbic acid, sugars, and total phenolic contents was observed in stressed conditions. Exogenous ZnNPs suppressed the NaCl generated reduction in biochemical traits, and progress of spinach plants. However, ZnNPs spray at 0.3% followed by priming was the most prominent treatment in the accumulation of osmolytes and the production of antioxidant molecules in plants.
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Affiliation(s)
- Sara Zafar
- Government College University, Faisalabad, Pakistan
| | | | | | - Muhammad Rashid Shaheen
- Department of Horticultural Sciences, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Punjab, Pakistan
| | - Rashid Hussain
- Department of Horticultural Sciences, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Punjab, Pakistan
| | - Nadeem Sarwar
- Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, Punjab, Pakistan
- Graduate School of Chinese Academy of Agricultural Sciences (GSCAAS), Beijing, China
| | - Sahar Rashid
- Horticultural Research Institute, Ayub Agricultural Research Institute, Faisalabad, Punjab, Pakistan
| | - Muhammad Nafees
- Department of Horticultural Sciences, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Punjab, Pakistan
| | - Ghulam Farid
- Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, Punjab, Pakistan
| | - Saud Alamri
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Anis Ali Shah
- Department of Botany, Division of Science and Technology University of Education, Lahore, Pakistan
| | - Talha Javed
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Mohammad Irfan
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, United States of America
| | - Manzer H. Siddiqui
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
- * E-mail:
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Gan SR, Guo JC, Zhang YX, Wang XF, Huang LJ. "Phoenix in Flight": an unique fruit morphology ensures wind dispersal of seeds of the phoenix tree (Firmiana simplex (L.) W. Wight). BMC Plant Biol 2022; 22:113. [PMID: 35279080 PMCID: PMC8917737 DOI: 10.1186/s12870-022-03494-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 02/24/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Many seed plants produce winged diaspores that use wind to disperse their seeds. The morphology of these diaspores is directly related to the seed dispersal potential. The majority of winged diaspores have flat wings and only seeds; however, some angiosperms, such as Firmiana produce winged fruit with a different morphology, whose seed dispersal mechanisms are not yet fully understood. In this study, we observed the fruit development of F. simplex and determined the morphological characteristics of mature fruit and their effects on the flight performance of the fruit. RESULTS We found that the pericarp of F. simplex dehisced early and continued to unfold and expand during fruit development until ripening, finally formed a spoon-shaped wing with multiple alternate seeds on each edge. The wing caused mature fruit to spin stably during descent to provide a low terminal velocity, which was correlated with the wing loading and the distribution of seeds on the pericarp. When the curvature distribution of the pericarp surface substantially changed, the aerodynamic characteristics of fruit during descent altered, resulting in the inability of the fruit to spin. CONCLUSIONS Our results suggest that the curved shape and alternate seed distribution are necessary for the winged diaspore of F. simplex to stabilize spinning during wind dispersal. These unique morphological characteristics are related to the early cracking of fruits during development, which may be an adaptation for the wind dispersal of seeds.
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Affiliation(s)
- Shi-Rui Gan
- College of Life Sciences, Wuhan University, Wuhan, 430072, China
| | - Jun-Cheng Guo
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yun-Xiao Zhang
- College of Life Sciences, Hubei University, Wuhan, 430062, China
| | - Xiao-Fan Wang
- College of Life Sciences, Wuhan University, Wuhan, 430072, China.
| | - Lan-Jie Huang
- College of Life Sciences, Hubei University, Wuhan, 430062, China.
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Dell’Aglio E. New insights in transcriptional control of somatic embryogenesis: the role of AGAMOUS-like 18. Plant Physiol 2022; 188:1410-1411. [PMID: 35245380 PMCID: PMC8896637 DOI: 10.1093/plphys/kiab593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 11/30/2021] [Indexed: 06/14/2023]
Affiliation(s)
- Elisa Dell’Aglio
- Institute National des Sciences Appliquées de Lyon, 69100 Villeurbanne, France
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12
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Paul P, Joshi S, Tian R, Diogo Junior R, Chakrabarti M, Perry SE. The MADS-domain factor AGAMOUS-Like18 promotes somatic embryogenesis. Plant Physiol 2022; 188:1617-1631. [PMID: 34850203 PMCID: PMC8896631 DOI: 10.1093/plphys/kiab553] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 10/29/2021] [Indexed: 05/08/2023]
Abstract
AGAMOUS-Like 18 (AGL18) is a MADS domain transcription factor (TF) that is structurally related to AGL15. Here we show that, like AGL15, AGL18 can promote somatic embryogenesis (SE) when ectopically expressed in Arabidopsis (Arabidopsis thaliana). Based on loss-of-function mutants, AGL15 and AGL18 have redundant functions in developmental processes such as SE. To understand the nature of this redundancy, we undertook a number of studies to look at the interaction between these factors. We studied the genome-wide direct targets of AGL18 to characterize its roles at the molecular level using chromatin immunoprecipitation (ChIP)-SEQ combined with RNA-SEQ. The results demonstrated that AGL18 binds to thousands of sites in the genome. Comparison of ChIP-SEQ data for AGL15 and AGL18 revealed substantial numbers of genes bound by both AGL15 and AGL18, but there were also differences. Gene ontology analysis revealed that target genes were enriched for seed, embryo, and reproductive development as well as hormone and stress responses. The results also demonstrated that AGL15 and AGL18 interact in a complex regulatory loop, where AGL15 inhibited transcript accumulation of AGL18, while AGL18 increased AGL15 transcript accumulation. Co-immunoprecipitation revealed an interaction between AGL18 and AGL15 in somatic embryo tissue. The binding and expression analyses revealed a complex crosstalk and interactions among embryo TFs and their target genes. In addition, our study also revealed that phosphorylation of AGL18 and AGL15 was crucial for the promotion of SE.
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Affiliation(s)
- Priyanka Paul
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, Kentucky 40546-0312, USA
| | - Sanjay Joshi
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, Kentucky 40546-0312, USA
| | - Ran Tian
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, Kentucky 40546-0312, USA
| | - Rubens Diogo Junior
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, Kentucky 40546-0312, USA
| | - Manohar Chakrabarti
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, Kentucky 40546-0312, USA
| | - Sharyn E Perry
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, Kentucky 40546-0312, USA
- Author for communication:
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13
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Zhang L, Li N, Zhang J, Zhao L, Qiu J, Wei C. The CBM48 domain-containing protein FLO6 regulates starch synthesis by interacting with SSIVb and GBSS in rice. Plant Mol Biol 2022; 108:343-361. [PMID: 34387795 DOI: 10.1007/s11103-021-01178-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 07/30/2021] [Indexed: 05/27/2023]
Abstract
FLO6 is involved in starch synthesis by interacting with SSIVb and GBSS in rice. Starch synthesized and stored in plastids including chloroplasts and amyloplasts plays a vital role in plant growth and provides the major energy for human diet. However, the molecular mechanisms by which regulate starch synthesis remain largely unknown. In this study, we identified and characterized a rice floury endosperm mutant M39, which exhibited defective starch granule formation in pericarp and endosperm, accompanied by the decreased starch content and amylose content. The abnormal starch accumulation in M39 pollen grains caused a significant decrease in plant fertility. Chloroplasts in M39 leaves contained no or only one large starch granule. Positional cloning combined with complementary experiment demonstrated that the mutant phenotypes were restored by the FLOURY ENDOSPERM6 (FLO6). FLO6 was generally expressed in various tissues, including leaf, anther and developing endosperm. FLO6 is a chloroplast and amyloplast-localized protein that is able to bind to starch by its carbohydrate-binding module 48 (CBM48) domain. Interestingly, we found that FLO6 interacted with starch synthase IVb (SSIVb) and granule-bound starch synthase (GBSSI and GBSSII). Together, our results suggested that FLO6 plays a critical role in starch synthesis through cooperating with several starch synthesis enzymes throughout plant growth and development.
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Affiliation(s)
- Long Zhang
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Yangzhou University, Yangzhou, 225009, China
- Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Joint International Research Laboratory of Agriculture & Agri-Product Safety of the Ministry of Education, Yangzhou University, Yangzhou, 225009, China
| | - Ning Li
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Yangzhou University, Yangzhou, 225009, China
- Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Joint International Research Laboratory of Agriculture & Agri-Product Safety of the Ministry of Education, Yangzhou University, Yangzhou, 225009, China
| | - Jing Zhang
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Yangzhou University, Yangzhou, 225009, China
- Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Joint International Research Laboratory of Agriculture & Agri-Product Safety of the Ministry of Education, Yangzhou University, Yangzhou, 225009, China
| | - Linglong Zhao
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Yangzhou University, Yangzhou, 225009, China
- Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Joint International Research Laboratory of Agriculture & Agri-Product Safety of the Ministry of Education, Yangzhou University, Yangzhou, 225009, China
| | - Jiajing Qiu
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Yangzhou University, Yangzhou, 225009, China
- Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Joint International Research Laboratory of Agriculture & Agri-Product Safety of the Ministry of Education, Yangzhou University, Yangzhou, 225009, China
| | - Cunxu Wei
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Yangzhou University, Yangzhou, 225009, China.
- Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Joint International Research Laboratory of Agriculture & Agri-Product Safety of the Ministry of Education, Yangzhou University, Yangzhou, 225009, China.
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14
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Guo X, Zhi W, Feng Y, Zhou G, Zhu G. Seed priming improved salt-stressed sorghum growth by enhancing antioxidative defense. PLoS One 2022; 17:e0263036. [PMID: 35213549 PMCID: PMC8880608 DOI: 10.1371/journal.pone.0263036] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 01/10/2022] [Indexed: 12/05/2022] Open
Abstract
Seed priming is regarded as a beneficial and effective method enhancing performance of plants grown under stress conditions. This study illustrated the effect of four seed priming agents (2% H2O2, 52 mM NaCl, 50 mM KCl, 250 mM MgSO4) on two sorghum cultivars (Canada sorghum CFSH-30 and sorghum '1230') grown in saline soils. Sorghum growth characteristics and biochemical parameters were investigated. Seed priming treatments alleviated the adverse effects of salt stress by decreasing MDA content and enhancing antioxidant enzymes (CAT, POD and SOD) activities and proline content, and hence increased sorghum fresh and dry weight. In terms of various parameters, sorghum '1230' was more suitable to be grown in saline soil, and 52 mM NaCl and 50 mM KCl were the optimum priming agents to improve the performance of salt-stressed sorghum.
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Affiliation(s)
- Xiaoqian Guo
- Joint International Laboratory of Agriculture and Agri-Product Safety, Yangzhou University, Yangzhou, Jiangsu Province, China
- Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology, Yangzhou University, Yangzhou, Jiangsu Province, China
| | - Wenfang Zhi
- Joint International Laboratory of Agriculture and Agri-Product Safety, Yangzhou University, Yangzhou, Jiangsu Province, China
- Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology, Yangzhou University, Yangzhou, Jiangsu Province, China
| | - Yuntong Feng
- Joint International Laboratory of Agriculture and Agri-Product Safety, Yangzhou University, Yangzhou, Jiangsu Province, China
- Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology, Yangzhou University, Yangzhou, Jiangsu Province, China
| | - Guisheng Zhou
- Joint International Laboratory of Agriculture and Agri-Product Safety, Yangzhou University, Yangzhou, Jiangsu Province, China
- Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology, Yangzhou University, Yangzhou, Jiangsu Province, China
| | - Guanglong Zhu
- Joint International Laboratory of Agriculture and Agri-Product Safety, Yangzhou University, Yangzhou, Jiangsu Province, China
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15
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Guo Z, Yu S, Fu J, Ma K, Zhang R. Screening and functional prediction of differentially expressed genes in walnut endocarp during hardening period based on deep neural network under agricultural internet of things. PLoS One 2022; 17:e0263755. [PMID: 35202404 PMCID: PMC8870417 DOI: 10.1371/journal.pone.0263755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 01/25/2022] [Indexed: 11/18/2022] Open
Abstract
The deep neural network is used to establish a neural network model to solve the problems of low accuracy and poor accuracy of traditional algorithms in screening differentially expressed genes and function prediction during the walnut endocarp hardening stage. The paper walnut is used as the research object to analyze the biological information of paper walnut. The changes of lignin deposition during endocarp hardening from 50 days to 90 days are observed by microscope. Then, the Convolutional Neural Network (CNN) and Long and Short-term Memory (LSTM) network model are adopted to construct an expression gene screening and function prediction model. Then, the transcriptome and proteome sequencing and biological information of walnut endocarp samples at 50, 57, 78, and 90 days after flowering are analyzed and taken as the training data set of the CNN + LSTM model. The experimental results demonstrate that the endocarp of paper walnut began to harden at 57 days, and the endocarp tissue on the hardened inner side also began to stain. This indicates that the endocarp hardened laterally from outside to inside. The screening and prediction results show that the CNN + LSTM model’s highest accuracy can reach 0.9264. The Accuracy, Precision, Recall, and F1-score of the CNN + LSTM model are better than the traditional machine learning algorithm. Moreover, the Receiver Operating Curve (ROC) area enclosed by the CNN + LSTM model and coordinate axis is the largest, and the Area Under Curve (AUC) value is 0.9796. The comparison of ROC and AUC proves that the CNN + LSTM model is better than the traditional algorithm for screening differentially expressed genes and function prediction in the walnut endocarp hardening stage. Using deep learning to predict expressed genes’ function accurately can reduce the breeding cost and significantly improve the yield and quality of crops. This research provides scientific guidance for the scientific breeding of paper walnut.
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Affiliation(s)
- Zhongzhong Guo
- College of Life Science, Tarim University, Alar, Xinjiang, China
- Key Laboratory of Biological Resource Protection and Utilization of Tarim Basin Xinjiang Production and Construction Group, Alar, Xinjiang, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in South Xinjiang, Alar, Xinjiang, China
| | - Shangqi Yu
- College of Life Science, Tarim University, Alar, Xinjiang, China
- Key Laboratory of Biological Resource Protection and Utilization of Tarim Basin Xinjiang Production and Construction Group, Alar, Xinjiang, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in South Xinjiang, Alar, Xinjiang, China
| | - Jiazhi Fu
- Key Laboratory of Biological Resource Protection and Utilization of Tarim Basin Xinjiang Production and Construction Group, Alar, Xinjiang, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in South Xinjiang, Alar, Xinjiang, China
- College of Horticulture and Forestry Sciences, Tarim University, Alar, Xinjiang, China
| | - Kai Ma
- Research Institute of Horticultural Crops, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Rui Zhang
- Key Laboratory of Biological Resource Protection and Utilization of Tarim Basin Xinjiang Production and Construction Group, Alar, Xinjiang, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in South Xinjiang, Alar, Xinjiang, China
- College of Horticulture and Forestry Sciences, Tarim University, Alar, Xinjiang, China
- * E-mail:
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16
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Chauhan BS, Manalil S. Seedbank persistence of four summer grass weed species in the northeast cropping region of Australia. PLoS One 2022; 17:e0262288. [PMID: 34982794 PMCID: PMC8726505 DOI: 10.1371/journal.pone.0262288] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 12/21/2021] [Indexed: 11/23/2022] Open
Abstract
Summer grass weed species are a particular problem in the northeast cropping region of Australia because they are prolific seeders and favor no-till systems. Information on weed seed persistence levels can be used for the development of effective and sustainable integrated weed management programs. A field study was conducted over 42 months to evaluate the seedbank persistence of Chloris truncata, C. virgata, Dactyloctenium radulans, and Urochloa panicoides as affected by burial depth (0, 2, and 10 cm). Regardless of species, buried seeds persisted longer than surface seeds and there was no difference in seed persistence between 2 and 10 cm depths. Surface seeds of C. truncata depleted completely in 12 months and buried seeds in 24 months. Similarly, C. virgata seeds placed on the soil surface depleted in 12 months. Buried seeds of this species took 18 months to completely deplete, suggesting that C. truncata seeds persist longer than C. virgata seeds. Surface seeds of D. radulans took 36 months to completely deplete, whereas about 7% of buried seeds were still viable at 42 months. U. panicoides took 24 and 42 months to completely exhaust the surface and buried seeds, respectively. These results suggest that leaving seeds on the soil surface will result in a more rapid depletion of the seedbank. Information on seed persistence will help to manage these weeds using strategic tillage operations.
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Affiliation(s)
- Bhagirath Singh Chauhan
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Gatton, Queensland, Australia
- School of Agriculture and Food Sciences (SAFS), The University of Queensland, Gatton, Queensland, Australia
- * E-mail:
| | - Sudheesh Manalil
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Gatton, Queensland, Australia
- School of Agriculture and Environment, The University of Western Australia, Perth, Australia
- Amrita Vishwa Vidyapeetham, Coimbatore, India
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17
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Li H, Li X, Wang G, Zhang J, Wang G. Analysis of gene expression in early seed germination of rice: landscape and genetic regulation. BMC Plant Biol 2022; 22:70. [PMID: 35176996 PMCID: PMC8851807 DOI: 10.1186/s12870-022-03458-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 02/09/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Seed germination is a crucial process, which determines the initiation of seed plant life cycle. The early events during this important life cycle transition that called early seed germination is defined as initially water uptake plus radicle growing out of the covering seed layers. However, a specific genome-wide analysis of early seed germination in rice is still obscure. RESULTS In this study, the physiological characteristics of rice seed during seed germination are determined to define key points of early seed germination. Transcriptome analyses of early phase of seed germination provided deeper insight into the genetic regulation landscape. Many genes involved in starch-to-sucrose transition were differentially expressed, especially alpha-amylase 1b and beta-amylase 2, which were predominantly expressed. Differential exon usage (DEU) genes were identified, which were significantly enriched in the pathway of starch and sucrose metabolism, indicating that DEU events were critical for starch-to-sucrose transition at early seed germination. Transcription factors (TFs) were also dramatic expressed, including the abscisic acid (ABA) responsive gene, OsABI5, and gibberellic acid (GA) responsive genes, GAI. Moreover, GAI transactivated GA responsive gene, GAMYB in vivo, indicating a potential pathway involved in early seed germination process. In addition, CBL-interacting protein kinase (CIPK) genes, such as CIPK13, CIPK14 and CIPK17 were potentially interacted with other proteins, indicating its pivotal role at early seed germination. CONCLUSION Taken together, gene regulation of early seed germination in rice was complex and protein-to-gene or protein-to-protein interactions were indispensable.
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Affiliation(s)
- Haoxuan Li
- Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060, China
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, China
- Department of Biology, Hong Kong Baptist University, Kowloon, Hong Kong, China
| | - Xiaozheng Li
- Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060, China
| | - Guanjie Wang
- College of Life Sciences, Jilin Agricultural University, Jilin, China
| | - Jianhua Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, China.
- Department of Biology, Hong Kong Baptist University, Kowloon, Hong Kong, China.
| | - Guanqun Wang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong, China.
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18
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Pierre N, Wamalwa LN, Muiru WM, Simon B, Kanju E, Ferguson ME, Ndavi MM, Tumwegamire S. Genetic diversity of local and introduced cassava germplasm in Burundi using DArTseq molecular analyses. PLoS One 2022; 17:e0256002. [PMID: 35073332 PMCID: PMC8786168 DOI: 10.1371/journal.pone.0256002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 12/16/2021] [Indexed: 11/19/2022] Open
Abstract
In Burundi most small-scale farmers still grow traditional cassava landraces that are adapted to local conditions and have been selected for consumer preferred attributes. They tend to be susceptible, in varying degrees, to devastating cassava viral diseases such as Cassava Brown Streak Disease (CBSD) and Cassava Mosaic Disease (CMD) with annual production losses of US$1 billion. For long term resistance to the disease, several breeding strategies have been proposed. A sound basis for a breeding program is to understand the genetic diversity of both landraces and elite introduced breeding cultivars. This will also assist in efforts to conserve landraces ahead of the broad distribution of improved varieties which have the possibility of replacing landraces. Our study aimed at determining the genetic diversity and relationships within and between local landraces and introduced elite germplasm using morphological and single nucleotide polymorphism (SNP) markers. A total of 118 cultivars were characterized for morphological trait variation based on leaf, stem and root traits, and genetic variation using SNP markers. Results of morphological characterization based on Ward’s Method revealed three main clusters and five accessions sharing similar characteristics. Molecular characterization identified over 18,000 SNPs and six main clusters and three pairs of duplicates which should be pooled together as one cultivar to avoid redundancy. Results of population genetic analysis showed low genetic distance between populations and between local landraces and elite germplasm. Accessions that shared similar morphological traits were divergent at the molecular level indicating that clustering using morphological traits was inconsistent. Despite the variabilities found within the collection, it was observed that cassava germplasm in Burundi have a narrow genetic base.
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Affiliation(s)
- Niyonzima Pierre
- Department of Plant Science and Crop Protection, University of Nairobi, Nairobi, Kenya
- Institut des Sciences Agronomiques du Burundi (ISABU), Bujumbura, Burundi
- * E-mail: ,
| | - Lydia Nanjala Wamalwa
- Department of Plant Science and Crop Protection, University of Nairobi, Nairobi, Kenya
| | - William Maina Muiru
- Department of Plant Science and Crop Protection, University of Nairobi, Nairobi, Kenya
| | - Bigirimana Simon
- Institut des Sciences Agronomiques du Burundi (ISABU), Bujumbura, Burundi
| | - Edward Kanju
- International Institute of Tropical Agriculture (IITA), Kampala, Uganda
| | | | - Malu Muia Ndavi
- International Fund for Agriculture Development (IFAD), Rome, Italy
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19
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Zarban RA, Hameed UFS, Jamil M, Ota T, Wang JY, Arold ST, Asami T, Al-Babili S. Rational design of Striga hermonthica-specific seed germination inhibitors. Plant Physiol 2022; 188:1369-1384. [PMID: 34850204 PMCID: PMC8825254 DOI: 10.1093/plphys/kiab547] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 10/11/2021] [Indexed: 05/20/2023]
Abstract
The obligate hemiparasitic weed Striga hermonthica grows on cereal roots and presents a severe threat to global food security by causing enormous yield losses, particularly in sub-Saharan Africa. The rapidly increasing Striga seed bank in infested soils provides a major obstacle in controlling this weed. Striga seeds require host-derived strigolactones (SLs) for germination, and corresponding antagonists could be used as germination inhibitors. Recently, we demonstrated that the common detergent Triton X-100 is a specific inhibitor of Striga seed germination by binding noncovalently to its receptor, S. hermonthica HYPO-SENSITIVE TO LIGHT 7 (ShHTL7), without blocking the rice (Oryza sativa) SL receptor DWARF14 (OsD14). Moreover, triazole ureas, the potent covalently binding antagonists of rice SL perception with much higher activity toward OsD14, showed inhibition of Striga but were less specific. Considering that Triton X-100 is not suitable for field application and by combining structural elements of Triton and triazole urea, we developed two hybrid compounds, KK023-N1 and KK023-N2, as potential Striga-specific germination inhibitors. Both compounds blocked the hydrolysis activity of ShHTL7 but did not affect that of OsD14. Binding of KK023-N1 diminished ShHTL7 interaction with S. hermonthica MORE AXILLARY BRANCHING 2, a major component in SL signal transduction, and increased ShHTL7 thermal specificity. Docking studies indicate that KK023-N1 binding is not covalent but is caused by hydrophobic interactions. Finally, in vitro and greenhouse tests revealed specific inhibition of Striga seed germination, which led to a 38% reduction in Striga infestation in pot experiments. These findings reveal that KK023-N1 is a potential candidate for combating Striga and a promising basis for rational design and development of further Striga-specific herbicides.
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Affiliation(s)
- Randa A Zarban
- Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, The BioActives Lab, Thuwal, 23955-6900, Saudi Arabia
| | - Umar F Shahul Hameed
- Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Computational Bioscience Research Center, Thuwal, 23955-6900, Saudi Arabia
| | - Muhammad Jamil
- Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, The BioActives Lab, Thuwal, 23955-6900, Saudi Arabia
| | - Tsuyoshi Ota
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Jian You Wang
- Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, The BioActives Lab, Thuwal, 23955-6900, Saudi Arabia
| | - Stefan T Arold
- Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Computational Bioscience Research Center, Thuwal, 23955-6900, Saudi Arabia
- Centre de Biochimie Structurale, CNRS, INSERM, Université de Montpellier, Montpellier, 34090 France
| | - Tadao Asami
- Centre de Biochimie Structurale, CNRS, INSERM, Université de Montpellier, Montpellier, 34090 France
| | - Salim Al-Babili
- Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, The BioActives Lab, Thuwal, 23955-6900, Saudi Arabia
- Author for communication:
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20
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Li M, Wrobel-Marek J, Heidmann I, Horstman A, Chen B, Reis R, Angenent GC, Boutilier K. Auxin biosynthesis maintains embryo identity and growth during BABY BOOM-induced somatic embryogenesis. Plant Physiol 2022; 188:1095-1110. [PMID: 34865162 PMCID: PMC8825264 DOI: 10.1093/plphys/kiab558] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Accepted: 11/03/2021] [Indexed: 05/18/2023]
Abstract
Somatic embryogenesis is a type of plant cell totipotency where embryos develop from nonreproductive (vegetative) cells without fertilization. Somatic embryogenesis can be induced in vitro by auxins, and by ectopic expression of embryo-expressed transcription factors like the BABY BOOM (BBM) AINTEGUMENTA-LIKE APETALA2/ETHYLENE RESPONSE FACTOR domain protein. These different pathways are thought to converge to promote auxin response and biosynthesis, but the specific roles of the endogenous auxin pathway in somatic embryogenesis induction have not been well-characterized. Here we show that BBM transcriptionally regulates the YUCCA3 (YUC3) and YUC8 auxin biosynthesis genes during BBM-mediated somatic embryogenesis in Arabidopsis (Arabidopsis thaliana) seedlings. BBM induced local and ectopic YUC3 and YUC8 expression in seedlings, which coincided with increased DR5 auxin response and indole-3-acetic acid (IAA) biosynthesis and with ectopic expression of the WOX2 embryo reporter. YUC-driven auxin biosynthesis was required for BBM-mediated somatic embryogenesis, as the number of embryogenic explants was reduced by ca. 50% in yuc3 yuc8 mutants and abolished after chemical inhibition of YUC enzyme activity. However, a detailed YUC inhibitor time-course study revealed that YUC-dependent IAA biosynthesis is not required for the re-initiation of totipotent cell identity in seedlings. Rather, YUC enzymes are required later in somatic embryo development for the maintenance of embryo identity and growth. This study resolves a long-standing question about the role of endogenous auxin biosynthesis in transcription factor-mediated somatic embryogenesis and also provides an experimental framework for understanding the role of endogenous auxin biosynthesis in other in planta and in vitro embryogenesis systems.
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Affiliation(s)
- Mengfan Li
- Bioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands
- Laboratory of Molecular Biology, Wageningen University and Research, Wageningen, 6700 AP, Netherlands
| | - Justyna Wrobel-Marek
- Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Katowice, 40-032, Poland
| | - Iris Heidmann
- Bioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands
- Laboratory of Molecular Biology, Wageningen University and Research, Wageningen, 6700 AP, Netherlands
- Enza Zaden Research and Development B.V, Enkhuizen, 1602 DB, The Netherlands
| | - Anneke Horstman
- Bioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands
- Laboratory of Molecular Biology, Wageningen University and Research, Wageningen, 6700 AP, Netherlands
| | - Baojian Chen
- Bioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands
- Laboratory of Molecular Biology, Wageningen University and Research, Wageningen, 6700 AP, Netherlands
| | - Ricardo Reis
- Bioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands
| | - Gerco C Angenent
- Bioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands
- Laboratory of Molecular Biology, Wageningen University and Research, Wageningen, 6700 AP, Netherlands
| | - Kim Boutilier
- Bioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands
- Author for communication:
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21
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Mulindwa J, Kaaya AN, Muganga L, Paga M, Musoli P, Sseremba G, Wagoire WW, Bitalo DN. Cup quality profiles of Robusta coffee wilt disease resistant varieties grown in three agro-ecologies in Uganda. J Sci Food Agric 2022; 102:1225-1232. [PMID: 34358355 DOI: 10.1002/jsfa.11460] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Revised: 07/09/2021] [Accepted: 08/06/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND The recently developed Robusta coffee wilt disease resistant (CWD-r) varieties in Uganda outperform the local landraces, both in yield and resilience. However, their uptake has been slow due to limited information on their cup worth. This study profiled the cup worth of the five most commonly grown CWD-r across the Lake Victoria Crescent, Western Mid-altitude farmland and Central Wooded Savannah agro-ecologies. RESULTS Significant correlations (P ≤ 0.05) were observed between soil nutrients and coffee bean size but this was not the case for biochemical and cup quality. The proportion of coffee beans retained on screen 15; minimum acceptable size through coffee commercial markets, ranged from 58.09% in Mukono to 92.49% in Mityana. Interestingly, the bean size of variety KR4 was hardly influenced by environmental variations, with portions of beans retained on screen 15 being relatively the same (80.30% Ibanda, 89.50% Mukono, 98.20% Mityana). Coffee cup quality for most of the varieties was scored as premium (70-79%) across three agro-ecologies, with the exception of KR4, which was scored specialty grade (≥80%). Coffee blends generated were used to make coffee products with specialty score (82.25%) and a distinctive aroma complex. CONCLUSION In this study, blends of CWD-r resulted in superior cup scores (76-82%). These findings show that CWD-r varieties have a high cup worth with potential for wide adaptation in Uganda's Robusta coffee growing agro-ecologies. Most importantly, variety KR4 has resilience across three agro-ecologies with a consistent high bean size and superior cup quality, making it a candidate variety for the market and breeding. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Joseph Mulindwa
- National Agricultural Research Organization, National Coffee Research Institute, Mukono, Uganda
| | - Archileo N Kaaya
- Department of Food Technology & Nutrition, Makerere University, Kampala, Uganda
| | - Lawrence Muganga
- National Agricultural Research Organization, National Coffee Research Institute, Mukono, Uganda
| | - Moses Paga
- Department of Food Technology & Nutrition, Makerere University, Kampala, Uganda
| | - Pascal Musoli
- National Agricultural Research Organization, National Coffee Research Institute, Mukono, Uganda
| | - Godfrey Sseremba
- National Agricultural Research Organization, National Coffee Research Institute, Mukono, Uganda
| | - William W Wagoire
- National Agricultural Research Organization, National Coffee Research Institute, Mukono, Uganda
| | - Daphne N Bitalo
- National Agricultural Research Organization, National Coffee Research Institute, Mukono, Uganda
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22
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Khan D, Ziegler DJ, Kalichuk JL, Hoi V, Huynh N, Hajihassani A, Parkin IAP, Robinson SJ, Belmonte MF. Gene expression profiling reveals transcription factor networks and subgenome bias during Brassica napus seed development. Plant J 2022; 109:477-489. [PMID: 34786793 DOI: 10.1111/tpj.15587] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2021] [Revised: 11/01/2021] [Accepted: 11/10/2021] [Indexed: 05/22/2023]
Abstract
We profiled the global gene expression landscape across the reproductive lifecycle of Brassica napus. Comparative analysis of this nascent amphidiploid revealed the contribution of each subgenome to plant reproduction. Whole-genome transcription factor networks identified BZIP11 as a transcriptional regulator of early B. napus seed development. Knockdown of BZIP11 using RNA interference resulted in a similar reduction in gene activity of predicted gene targets, and a reproductive-lethal phenotype. Global mRNA profiling revealed lower accumulation of Cn subgenome transcripts relative to the An subgenome. Subgenome-specific transcription factor networks identified distinct transcription factor families enriched in each of the An and Cn subgenomes early in seed development. Analysis of laser-microdissected seed subregions further reveal subgenome expression dynamics in the embryo, endosperm and seed coat of early stage seeds. Transcription factors predicted to be regulators encoded by the An subgenome are expressed primarily in the seed coat, whereas regulators encoded by the Cn subgenome were expressed primarily in the embryo. Data suggest subgenome bias are characteristic features of the B. napus seed throughout development, and that such bias might not be universal across the embryo, endosperm and seed coat of the developing seed. Transcriptional networks spanning both the An and Cn genomes of the whole B. napus seed can identify valuable targets for seed development research and that -omics level approaches to studying gene regulation in B. napus can benefit from both broad and high-resolution analyses.
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Affiliation(s)
- Deirdre Khan
- Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada
| | - Dylan J Ziegler
- Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada
| | - Jenna L Kalichuk
- Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada
| | - Vanessa Hoi
- Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada
| | - Nina Huynh
- Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada
| | - Abolfazl Hajihassani
- Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada
| | - Isobel A P Parkin
- Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, S7N 0X2, Canada
| | - Stephen J Robinson
- Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, S7N 0X2, Canada
| | - Mark F Belmonte
- Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada
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23
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Wang L, Dai W, Shi Y, Wang Y, Zhang C. Cloning and activity analysis of the highly expressed gene VviABCG20 promoter in seed and its activity is negatively regulated by the transcription factor VviDof14. Plant Sci 2022; 315:111152. [PMID: 35067313 DOI: 10.1016/j.plantsci.2021.111152] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Revised: 12/09/2021] [Accepted: 12/11/2021] [Indexed: 06/14/2023]
Abstract
Half-size ATP binding cassette G (ABCG) transporters participate in the growth and development of plants by transporting substrates. The VviABCG20 gene is highly expressed in seed and plays an important role in seed development/abortion. However, little is known about the function of the VviABCG20 promoter (pVviABCG20) and its regulatory factors. In our study, we obtained pVviABCG20s from 15 seeded and seedless grape varieties and there were two types of 'a' and 'b' with 41 bp non-deletion or deletion, respectively. The pVviABCG20 activity was higher in seeds, siliques, flowers and roots of pVviABCG20-GUS Arabidopsis. The GUS activity analysis revealed that the activities of P4 (-586 bp) to P7 (-155 bp) were becoming increasingly weaker, and the P7 activity almost disappears compared with the pVviABCG20 (P0, -1604). Yeast one-hybrid and GUS activity analysis indicated that VviDof14 binds to the AAAG element in the P7' (-586 bp) fragment of the pVviABCG20 and regulated the activity negatively. The quantitative real-time PCR analysis suggested that the expression of VviDof14 in Thompson seedless seeds was higher than that in Pinot noir. Our study laid the foundation for further analysis of the functions of the pVviABCG20 and its regulator VviDof14 in grape seed development/abortion.
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Affiliation(s)
- Ling Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northwest Region), Ministry of Agriculture, P.R. China, Yangling, Shaanxi, China
| | - Weina Dai
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northwest Region), Ministry of Agriculture, P.R. China, Yangling, Shaanxi, China
| | - Yuanyuan Shi
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northwest Region), Ministry of Agriculture, P.R. China, Yangling, Shaanxi, China
| | - Yuejin Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northwest Region), Ministry of Agriculture, P.R. China, Yangling, Shaanxi, China
| | - Chaohong Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northwest Region), Ministry of Agriculture, P.R. China, Yangling, Shaanxi, China.
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24
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Siegert W, Ibrahim A, Link W, Lux G, Schmidtke K, Hartung J, Nautscher N, Rodehutscord M. Amino acid digestibility and metabolisable energy of spring and winter faba beans grown on two sites and effects of dehulling in caecectomised laying hens. J Sci Food Agric 2022; 102:920-930. [PMID: 34235756 DOI: 10.1002/jsfa.11424] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 06/28/2021] [Accepted: 07/08/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND The variation in amino acid (AA) digestibility and metabolisable energy (MEN ) in four spring and four winter faba bean genotypes differing in vicine/convicine (V/C) concentrations grown on two sites was investigated in caecectomised LSL-Classic laying hens. Effects of dehulling one faba bean genotype were also examined. Diets containing one out of 17 faba bean variants each and a basal diet were fed to ten caecectomised laying hens in a row-column design to achieve five replicates per diet. RESULTS Ranges and levels of digestibility of the hulled variants differed widely among AA with the lowest and highest range determined for Arg (90-93%) and Cys (-12-65%), respectively. MEN ranged between 10.3 and 12.3 MJ kg-1 dry matter. Lower MEN and digestibility of Cys, Glx, Phe, Pro, Tyr, and Val (P < 0.050) was determined for the winter genotypes grown in Nimtitz compared to the other variants. Digestibility of Ser was lower for the spring than for the winter genotypes (P < 0.050). Negative correlations with AA digestibility were determined for phytate, but not for tannin and V/C concentrations (P < 0.050). Negative correlations between tannin fractions and MEN were weak (P = 0.082-0.099). Dehulling increased MEN by 1.8 MJ kg-1 dry matter and raised the digestibility of Pro, His, and Glx (P < 0.050). CONCLUSIONS The results indicated that the digestible AA and MEN supply of laying hens was increased by using low phytate faba beans while breeding for low V/C genotypes did not affect AA digestibility or MEN . Dehulling increased MEN and the digestibility of some AA. © 2021 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Wolfgang Siegert
- Institute of Animal Science, University of Hohenheim, Stuttgart, Germany
| | - Ahmad Ibrahim
- Institute of Animal Science, University of Hohenheim, Stuttgart, Germany
| | - Wolfgang Link
- Department of Crop Sciences, Georg-August-University, Göttingen, Germany
| | - Guido Lux
- Faculty of Environment, Agriculture, Chemistry, University of Applied Sciences Dresden, Dresden, Germany
| | - Knut Schmidtke
- Faculty of Environment, Agriculture, Chemistry, University of Applied Sciences Dresden, Dresden, Germany
| | - Jens Hartung
- Institute of Crop Science, University of Hohenheim, Stuttgart, Germany
| | - Nadine Nautscher
- Institute of Animal Science, University of Hohenheim, Stuttgart, Germany
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25
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Yuan L, Zhang Z, Cao X, Wu L. Polyester sulfur-coated urea (PSCU) application enhances brown rice iron concentrations in two alkaline soils. J Sci Food Agric 2022; 102:1040-1046. [PMID: 34312864 DOI: 10.1002/jsfa.11439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 06/12/2021] [Accepted: 07/27/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND In neutral or alkaline soils, iron (Fe) easily forms insoluble complexes, which makes it difficult for plants to utilize Fe in the soil for nutrition. Polyester sulfur-coated urea (PSCU) is a novel controlled-release fertilizer widely used in China and some foreign countries, and it has been proven that sulfur film from controlled-release fertilizers can significantly improve the activation of Fe and other elements in the soil. However, few studies have focused on the effects of PSCU application on Fe accumulation in rice grain in alkaline soils. RESULTS Both our field and pot experiments proved that PSCU application could significantly improve rice grain yield and Fe concentration in brown rice in alkaline soil. This effect differs with different types of alkaline soils (i.e. medium-saline, sandy soil and/or silt soil). PSCU is released slowly, and the release rate is different in different alkaline soils. Rice shoot nitrogen (N) uptake was significantly enhanced with PSCU application. CONCLUSION The results suggested that PSCU application in alkaline soils could significantly enhance brown rice Fe concentration and production. This effect differed with different kinds of alkaline soils. The study identified some efficient fertilizers to improve the Fe status in alkaline soils. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Ling Yuan
- Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, China
| | - Zhicheng Zhang
- Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, China
| | - Xiaochuang Cao
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
| | - Lianghuan Wu
- Ministry of Education Key Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
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26
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Fernie AR. Asserting dominance: the subgenome networks underlying Canola seed development. Plant J 2022; 109:475-476. [PMID: 35092327 DOI: 10.1111/tpj.15659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
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27
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Yuan C, Wang S, Lu D. Fertilization time of slow-release fertilizer affects the physicochemical properties of starch from spring-sown waxy maize. J Sci Food Agric 2022; 102:1012-1020. [PMID: 34312861 DOI: 10.1002/jsfa.11436] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Revised: 03/24/2021] [Accepted: 07/26/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Slow-release fertilizer is widely used in cereal crop production because it is ecofriendly and laborsaving. Effects of different application stages (zero-, three-, and six-leaf stages, denoted as SN0, SN3, and SN6, respectively) of slow-release (N/P2 O5 /K2 O = 225/75/75 kg ha-1 ) fertilizer on physicochemical properties of starch from spring-sown waxy maize were investigated in 2018 and 2019. Application of traditional fertilizer (NCK, compound fertilizer; N/P2 O5 /K2 O = 75/75/75 kg ha-1 ) at sowing time and urea (N = 150 kg ha-1 ) at six-leaf stage was designated as the control. RESULTS In comparison to the NCK, SN0 reduced grain starch content by 4.9%. Meanwhile, SN3 and SN6 did not affect this parameter. Nevertheless, all treatments, particularly SN6, increased average starch granule size. The slow-release fertilizer reduced proportion of chains with degree of polymerization (DP) > 24. Relative to NCK, SN6 increased starch crystallinity in both years, whereas SN0 and SN3 increased it in 2018 but reduced it in 2019. SN0 reduced peak, trough, and final viscosities, whereas SN3 and SN6 produced similar starch viscosities to those produced by NCK. No fertilizer mode affected gelatinization parameters, but SN6 produced a low retrogradation percentage. In comparison to data for 2018, starch produced in 2019 showed a small granule size, and a high proportion of short amylopectin chains. These properties endowed starch with high viscosity and low retrogradation percentage. CONCLUSION In spring-sown waxy maize production, applying slow-release fertilizer at the six-leaf stage produced starch with high viscosity and low retrogradation tendency by enlarging granule size, increasing crystallinity, and reducing the proportion of long chains. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Chao Yuan
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, China
| | - Siyang Wang
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, China
| | - Dalei Lu
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, China
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou, China
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28
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Mahanta S, Habib MR, Moore JM. Effect of High-Voltage Atmospheric Cold Plasma Treatment on Germination and Heavy Metal Uptake by Soybeans ( Glycine max). Int J Mol Sci 2022; 23:1611. [PMID: 35163533 PMCID: PMC8836053 DOI: 10.3390/ijms23031611] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 01/25/2022] [Accepted: 01/28/2022] [Indexed: 02/06/2023] Open
Abstract
The need to feed 9.9 billion people by 2050 will require the coordination of farming practices and water utilization by nutrient-dense plants and crops. High levels of lead (Pb), a toxic element that can accumulate in plants, can lead to toxicity in humans. With the development of novel treatment technologies, such as atmospheric cold plasma (ACP) and engineered nanoparticles (NPs), the time to germination and levels of heavy metals in food and feed commodities can be reduced. This study provides insight into the impact of plasma-activated water (PAW) on the germination rates and effects of soybean seeds, and the resultant combination effects of zinc oxide uptake in the presence of lead. Soybean seedlings were watered with PAW (treated for 3, 5, and 7 min at 30, 50, and 70 kV), and the germination and growth rate were monitored for 10 days. The germinated seedlings were then grown hydroponically in a nutrient solution, and the biomass of each example was measured. The PAW treatment that resulted in the best growth of soybean seeds was then exposed to Pb and zinc-oxide nanoparticles (ZnONPs) to investigate heavy metal uptake in the presence of nanoparticles. After acid digestion, the rate of heavy metal uptake by the soybean plants was evaluated using inductively coupled plasma-mass spectrometry. The PAW seeds grew and germinated more quickly, demonstrating that the plasma therapy had an effect. The rate of heavy metal uptake by the plants was also shown to be 5x lower in the presence of ZnONP.
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Affiliation(s)
| | | | - Janie McClurkin Moore
- Biological and Agricultural Engineering Department, Texas A&M University, College Station, TX 77843, USA; (S.M.); (M.R.H.)
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29
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Işçimen EM, Hayta M. Effect of ultrasound pretreatment on the functional and antioxidant properties of fermented and germinated Lupin protein isolates grafted with glucose. J Sci Food Agric 2022; 102:550-556. [PMID: 34146348 DOI: 10.1002/jsfa.11383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 05/21/2021] [Accepted: 06/19/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND This study examined the functional and antioxidant properties of Maillard reaction (MR) products of lupin protein isolate (LPI), fermented (FLPI), and germinated (GLPI) with glucose (G), treated with ultrasound (US) at different power levels (20-40-60-80%) for 15 min. The MR was conducted in a water bath for 180 min at 90 °C. RESULTS The Trolox-equivalent antioxidant capacity (TEAC) values were found to be 46.79%, 56.43%, and 35.56% for the control (C), 58.99%, 80.17%, and 69.73% for conjugates of LPI-G, FLPI-G, and GLPI-G treated at 80% US, respectively. The maximum 2,2-diphenyl-1-picrylhydrazyl (DPPH) scavenging activity of LPI-G, FLPI-G, and GLPI-G was found to be 39.68%, 59.54%, and 48.41%, respectively after 80% US. The FLPI-G sample showed the highest antioxidant activity compared with the samples treated at the same power level for DPPH and TEAC. The Fe-chelating activity of GLPI-G showed significant differences when compared with FLPI-G. The solubility of LPI-G, FLPI-G, and GLPI-G increased with increasing US power. The highest solubility was 74.29% for 80% US-treated GLPI-G. The emulsifying activity index (EAI) increased at 20% US and decreased with further increase in the US power. The EAI and emulsifying stability index (ESI) were negatively affected by the MR and US processes. CONCLUSION The findings of current study proved that conjugation of LPI with G with the MR and with US pretreatment is an effective method for improving the bio- and techno-functional properties of LPI. It is therefore likely that the properties of plant proteins modified by biochemical and physical treatments may widen their applications in the food industry. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Elif Meltem Işçimen
- Department of Food Engineering, Faculty Engineering, Erciyes University, Kayseri, Turkey
| | - Mehmet Hayta
- Department of Food Engineering, Faculty Engineering, Erciyes University, Kayseri, Turkey
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30
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Seok HY, Kim T, Lee SY, Moon YH. Non-TZF Transcriptional Activator AtC3H12 Negatively Affects Seed Germination and Seedling Development in Arabidopsis. Int J Mol Sci 2022; 23:1572. [PMID: 35163496 PMCID: PMC8835867 DOI: 10.3390/ijms23031572] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 01/09/2022] [Accepted: 01/28/2022] [Indexed: 11/23/2022] Open
Abstract
CCCH zinc finger proteins are a large protein family and are classified as either tandem CCCH zinc finger (TZF) or non-TZF proteins. The roles of TZF genes in several plants have been well determined, whereas the functions of many non-TZF genes in plants remain uncharacterized. Herein, we describe biological and molecular functions of AtC3H12, an Arabidopsis non-TZF protein containing three CCCH zinc finger motifs. AtC3H12 has orthologs in several plant species but has no paralog in Arabidopsis. AtC3H12-overexpressing transgenic plants (OXs) germinated slower than wild-type (WT) plants, whereas atc3h12 mutants germinated faster than WT plants. The fresh weight (FW) and primary root lengths of AtC3H12 OX seedlings were lighter and shorter than those of WT seedlings, respectively. In contrast, FW and primary root lengths of atc3h12 seedlings were heavier and longer than those of WT seedlings, respectively. AtC3H12 was localized in the nucleus and displayed transactivation activity in both yeast and Arabidopsis. We found that the 97-197 aa region of AtC3H12 is an important part for its transactivation activity. Detection of expression levels and analysis of Arabidopsis transgenic plants harboring a PAtC3H12::GUS construct showed that AtC3H12 expression increases as the Arabidopsis seedlings develop. Taken together, our results demonstrate that AtC3H12 negatively affects seed germination and seedling development as a nuclear transcriptional activator in Arabidopsis. To our knowledge, this is the first report to show that non-TZF proteins negatively affect plant development as nuclear transcriptional activators.
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Affiliation(s)
- Hye-Yeon Seok
- Institute of Systems Biology, Pusan National University, Busan 46241, Korea; (H.-Y.S.); (S.-Y.L.)
| | - Taehyoung Kim
- Department of Integrated Biological Science, Pusan National University, Busan 46241, Korea;
| | - Sun-Young Lee
- Institute of Systems Biology, Pusan National University, Busan 46241, Korea; (H.-Y.S.); (S.-Y.L.)
| | - Yong-Hwan Moon
- Institute of Systems Biology, Pusan National University, Busan 46241, Korea; (H.-Y.S.); (S.-Y.L.)
- Department of Integrated Biological Science, Pusan National University, Busan 46241, Korea;
- Department of Molecular Biology, Pusan National University, Busan 46241, Korea
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31
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Ghosh D, Brahmachari K, Skalický M, Roy D, Das A, Sarkar S, Moulick D, Brestič M, Hejnak V, Vachova P, Hassan MM, Hossain A. The combination of organic and inorganic fertilizers influence the weed growth, productivity and soil fertility of monsoon rice. PLoS One 2022; 17:e0262586. [PMID: 35085310 PMCID: PMC8794211 DOI: 10.1371/journal.pone.0262586] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 12/29/2021] [Indexed: 11/24/2022] Open
Abstract
Synthetic fertilizer and herbicides encompass the largest share in nutrient and weed management on food grain crops that create serious environmental issues. Integrated nutrient and non-chemical weed management approaches may help to reduce the chemical load in the environment, maintaining higher weed control efficiency and yield. A field experiment was conducted for two consecutive monsoon seasons during 2015 and 2016 in farm fields to develop a profitable and sustainable rice production system through integrated nutrient and weed management practices. A varied combination of nutrients either alone or integrated with chemical and non-chemical weed management were tested on transplanted rice in a factorial randomized block design with three replications. The results showed that the integration of concentrated organic manures with chemical fertilizer effectively inhibited weed growth and nutrient removal. Integration of nutrient and weed management practices significantly enhanced 9% biomass growth, 10% yield of the rice crop along with 3–7% higher nutrient uptake. Brassicaceous seed meal (BSM) and neem cake also had some influence on weed suppression and economic return. Thus, the integrated nutrient and weed management practices in rice cultivation might be an effective way to achieve economic sustainability and efficient rice cultivation in eastern India. Shortages of farmyard manure and vermicompost could be supplemented by BSM and neem cake in the integrated module.
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Affiliation(s)
- Dibakar Ghosh
- ICAR−Indian Institute of Water Management, Bhubaneswar, India
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, India
| | - Koushik Brahmachari
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, India
| | - Milan Skalický
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
| | - Dibakar Roy
- ICAR−Directorate of Weed Research, Jabalpur, India
| | - Anupam Das
- Department of Soil Science and Agricultural Chemistry, Bihar Agricultural University, Sabour, Bhagalpur, India
| | - Sukamal Sarkar
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, India
- Office of The Assistant Director of Agriculture, Bhagawangola-II Block, Directorate of Agriculture, Government of West Bengal, Murshidabad, India
| | - Debojyoti Moulick
- Plant Stress Biology and Metabolomics Laboratory, Assam University, Silchar, India
- Department of Environmental Science, University of Kalyani, Nadia, West Bengal, India
| | - Marián Brestič
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
- Department of Plant Physiology, Slovak University of Agriculture, Nitra, Slovak
| | - Vaclav Hejnak
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
| | - Pavla Vachova
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life Sciences Prague, Prague, Czechia
| | - Mohamed M. Hassan
- Department of Biology, College of Science, Taif University, Taif, Saudi Arabia
| | - Akbar Hossain
- Bangladesh Wheat and Maize Research Institute, Nashipur, Dinajpur, Bangladesh
- * E-mail:
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Tao YY, Shang TC, Yan JJ, Hu YX, Zhao Y, Liu Y. Effects of sand burial depth on Xanthium spinosum seed germination and seedling growth. BMC Plant Biol 2022; 22:43. [PMID: 35062882 PMCID: PMC8780796 DOI: 10.1186/s12870-022-03424-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 12/27/2021] [Indexed: 06/14/2023]
Abstract
In desert habitats, sand burial is an important factor affecting germination of plant seeds and seedling growth. Xanthium spinosum has strong adaptability in arid desert areas, and is a common malignant invasive plant in Xinjiang, China. The effects of different sand burial depths on seed germination, seedling emergence, growth and biomass allocation were studied to provide a scientific basis for further control of X. spinosum. Six sand burial depths (1, 2, 3, 5, 7 and 9 cm) were established to explore the response of X. spinosum seed germination and seedling growth to sand burial. The first emergence time, peak emergence time, emergence rate, seedling growth height, biomass and biomass distribution of X. spinosum seeds was significantly different at sand burial depths (P < 0.05). The X. spinosum seeds had the highest emergence rate (71.5%) at 1 cm sand burial and the maximum seedling height (7.1 cm). As sand burial depth increased, the emergence rate and seedling height gradually decreased. Emergence rate (12.25%) and seedling height (2.9 cm) were lowest at 9 cm sand burial. The root length at 9 cm depth (13.6 cm) was significantly higher than that at other sand depths (P < 0.05). The sand burial depth affected the biomass accumulation and distribution of X. spinosum. As sand burial depth increased, the root biomass and rhizome ratio increased, and the most deeply buried seedlings allocated more biomass for root growth. The optimal sand burial depth for seed germination and seedling growth of X. spinosum was 1-3 cm, and high burial depth (5-9 cm) was not conducive to the germination and growth of X. spinosum seedlings. For prevention and control of X. spinosum, we suggest deeply ploughing crops before sowing to ensure X. spinosum seeds are ploughed into a deep soil layer.
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Affiliation(s)
- Yuan-Yuan Tao
- History, Geography and Tourism School, Shangrao Normal University, Shangrao, 334001, China
- Biology and Geography Science School, Yili Normal University, Yining, 835000, China
| | - Tian-Cui Shang
- Biology and Geography Science School, Yili Normal University, Yining, 835000, China
| | - Jun-Jie Yan
- Biology and Geography Science School, Yili Normal University, Yining, 835000, China
| | - Yun-Xia Hu
- Biology and Geography Science School, Yili Normal University, Yining, 835000, China
| | - Yu Zhao
- History, Geography and Tourism School, Shangrao Normal University, Shangrao, 334001, China.
- Biology and Geography Science School, Yili Normal University, Yining, 835000, China.
| | - Ying Liu
- History, Geography and Tourism School, Shangrao Normal University, Shangrao, 334001, China.
- Biology and Geography Science School, Yili Normal University, Yining, 835000, China.
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Roodt D. Multi-omics approach highlights new targets for amino acid composition change in maize kernels. Plant Physiol 2022; 188:22-23. [PMID: 35051285 PMCID: PMC8774733 DOI: 10.1093/plphys/kiab466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 09/21/2021] [Indexed: 06/14/2023]
Affiliation(s)
- Danielle Roodt
- Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
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Ruan MB, Yu XL, Guo X, Zhao PJ, Peng M. Role of cassava CC-type glutaredoxin MeGRXC3 in regulating sensitivity to mannitol-induced osmotic stress dependent on its nuclear activity. BMC Plant Biol 2022; 22:41. [PMID: 35057736 PMCID: PMC8772167 DOI: 10.1186/s12870-022-03433-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 01/10/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND We previously identified six drought-inducible CC-type glutaredoxins in cassava cultivars, however, less is known about their potential role in the molecular mechanism by which cassava adapted to abiotic stress. RESULTS Herein, we investigate one of cassava drought-responsive CC-type glutaredoxins, namely MeGRXC3, that involved in regulation of mannitol-induced inhibition on seed germination and seedling growth in transgenic Arabidopsis. MeGRXC3 overexpression up-regulates several stress-related transcription factor genes, such as PDF1.2, ERF6, ORA59, DREB2A, WRKY40, and WRKY53 in Arabidopsis. Protein interaction assays show that MeGRXC3 interacts with Arabidopsis TGA2 and TGA5 in the nucleus. Eliminated nuclear localization of MeGRXC3 failed to result mannitol-induced inhibition of seed germination and seedling growth in transgenic Arabidopsis. Mutation analysis of MeGRXC3 indicates the importance of conserved motifs for its transactivation activity in yeast. Additionally, these motifs are also indispensable for its functionality in regulating mannitol-induced inhibition of seed germination and enhancement of the stress-related transcription factors in transgenic Arabidopsis. CONCLUSIONS MeGRXC3 overexpression confers mannitol sensitivity in transgenic Arabidopsis possibly through interaction with TGA2/5 in the nucleus, and nuclear activity of MeGRXC3 is required for its function.
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Affiliation(s)
- Meng-Bin Ruan
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101 China
- Key Laboratory of Biology and Genetic Resources of Torpical Crops, Ministry of Agriculture, Haikou, 571101 China
| | - Xiao-Ling Yu
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101 China
- Key Laboratory of Biology and Genetic Resources of Torpical Crops, Ministry of Agriculture, Haikou, 571101 China
| | - Xin Guo
- Key Laboratory of Biology and Genetic Resources of Torpical Crops, Ministry of Agriculture, Haikou, 571101 China
- Huazhong Agricultural University, Wuhan, 430070 China
| | - Ping-Juan Zhao
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101 China
- Key Laboratory of Biology and Genetic Resources of Torpical Crops, Ministry of Agriculture, Haikou, 571101 China
| | - Ming Peng
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101 China
- Key Laboratory of Biology and Genetic Resources of Torpical Crops, Ministry of Agriculture, Haikou, 571101 China
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35
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Liu S, Magne K, Daniel S, Sibout R, Ratet P. Brachypodium distachyon UNICULME4 and LAXATUM-A are redundantly required for development. Plant Physiol 2022; 188:363-381. [PMID: 34662405 PMCID: PMC8774750 DOI: 10.1093/plphys/kiab456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
In cultivated grasses, tillering, leaf, and inflorescence architecture, as well as abscission ability, are major agronomical traits. In barley (Hordeum vulgare), maize (Zea mays), rice (Oryza sativa), and brachypodium (Brachypodium distachyon), NOOT-BOP-COCH-LIKE (NBCL) genes are essential regulators of vegetative and reproductive development. Grass species usually possess 2-4 NBCL copies and until now a single study in O. sativa showed that the disruption of all NBCL genes strongly altered O. sativa leaf development. To improve our understanding of the role of NBCL genes in grasses, we extended the study of the two NBCL paralogs BdUNICULME4 (CUL4) and BdLAXATUM-A (LAXA) in the nondomesticated grass B. distachyon. For this, we applied reversed genetics and generated original B. distachyon single and double nbcl mutants by clustered regularly interspaced short palindromic repeats - CRISPR associated protein 9 (CRISPR-Cas9) approaches and genetic crossing between nbcl targeting induced local lesions in genomes (TILLING) mutants. Through the study of original single laxa CRISPR-Cas9 null alleles, we validated functions previously proposed for LAXA in tillering, leaf patterning, inflorescence, and flower development and also unveiled roles for these genes in seed yield. Furthermore, the characterization of cul4laxa double mutants revealed essential functions for nbcl genes in B. distachyon development, especially in the regulation of tillering, stem cell elongation and secondary cell wall composition as well as for the transition toward the reproductive phase. Our results also highlight recurrent antagonist interactions between NBCLs occurring in multiple aspects of B. distachyon development.
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Affiliation(s)
- Shengbin Liu
- Université Paris-Saclay, INRAE, CNRS, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Orsay 91405, France
- Institute of Plant Sciences Paris-Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Orsay 91405, France
| | - Kévin Magne
- Université Paris-Saclay, INRAE, CNRS, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Orsay 91405, France
- Institute of Plant Sciences Paris-Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Orsay 91405, France
| | - Sylviane Daniel
- UR1268 BIA (Biopolymères Interactions Assemblages), INRAE, Nantes 44300, France
| | - Richard Sibout
- UR1268 BIA (Biopolymères Interactions Assemblages), INRAE, Nantes 44300, France
| | - Pascal Ratet
- Université Paris-Saclay, INRAE, CNRS, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Orsay 91405, France
- Institute of Plant Sciences Paris-Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Orsay 91405, France
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Dal Santo S, De Paoli E, Pagliarani C, Amato A, Celii M, Boccacci P, Zenoni S, Gambino G, Perrone I. Stress responses and epigenomic instability mark the loss of somatic embryogenesis competence in grapevine. Plant Physiol 2022; 188:490-508. [PMID: 34726761 PMCID: PMC8774814 DOI: 10.1093/plphys/kiab477] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 09/17/2021] [Indexed: 06/13/2023]
Abstract
Somatic embryogenesis (SE) represents the most appropriate tool for next-generation breeding methods in woody plants such as grapevine (Vitis vinifera L.). However, in this species, the SE competence is strongly genotype-dependent and the molecular basis of this phenomenon is poorly understood. We explored the genetic and epigenetic basis of SE in grapevine by profiling the transcriptome, epigenome, and small RNAome of undifferentiated, embryogenic, and non-embryogenic callus tissues derived from two genotypes differing in competence for SE, Sangiovese and Cabernet Sauvignon. During the successful formation of embryonic callus, we observed the upregulation of epigenetic-related transcripts and short interfering RNAs in association with DNA hypermethylation at transposable elements in both varieties. Nevertheless, the switch to nonembryonic development matched the incomplete reinforcement of transposon silencing, and the evidence of such effect was more apparent in the recalcitrant Cabernet Sauvignon. Transcriptomic differences between the two genotypes were maximized already at early stage of culture where the recalcitrant variety expressed a broad panel of genes related to stress responses and secondary metabolism. Our data provide a different angle on the SE molecular dynamics that can be exploited to leverage SE as a biotechnological tool for fruit crop breeding.
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Affiliation(s)
- Silvia Dal Santo
- Department of Biotechnology, University of Verona, Verona 37134, Italy
| | - Emanuele De Paoli
- Department of Agri-Food, Environmental and Animal Sciences, University of Udine, Udine 33100, Italy
| | - Chiara Pagliarani
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino 10135, Italy
| | - Alessandra Amato
- Department of Biotechnology, University of Verona, Verona 37134, Italy
| | - Mirko Celii
- Department of Agri-Food, Environmental and Animal Sciences, University of Udine, Udine 33100, Italy
| | - Paolo Boccacci
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino 10135, Italy
| | - Sara Zenoni
- Department of Biotechnology, University of Verona, Verona 37134, Italy
| | - Giorgio Gambino
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino 10135, Italy
| | - Irene Perrone
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino 10135, Italy
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Yeh SY, Lin HH, Chang YM, Chang YL, Chang CK, Huang YC, Ho YW, Lin CY, Zheng JZ, Jane WN, Ng CY, Lu MY, Lai IL, To KY, Li WH, Ku MSB. Maize Golden2-like transcription factors boost rice chloroplast development, photosynthesis, and grain yield. Plant Physiol 2022; 188:442-459. [PMID: 34747472 PMCID: PMC9049120 DOI: 10.1093/plphys/kiab511] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 10/10/2021] [Indexed: 05/03/2023]
Abstract
Chloroplasts are the sites for photosynthesis, and two Golden2-like factors act as transcriptional activators of chloroplast development in rice (Oryza sativa L.) and maize (Zea mays L.). Rice OsGLK1 and OsGLK2 are orthologous to maize ZmGLK1 (ZmG1) and ZmGLK2 (ZmG2), respectively. However, while rice OsGLK1 and OsGLK2 act redundantly to regulate chloroplast development in mesophyll cells, maize ZmG1 and ZmG2 are functionally specialized and expressed in different cell-specific manners. To boost rice chloroplast development and photosynthesis, we generated transgenic rice plants overexpressing ZmG1 and ZmG2, individually or simultaneously, with constitutive promoters (pZmUbi::ZmG1 and p35S::ZmG2) or maize promoters (pZmG1::ZmG1, pZmG2::ZmG2, and pZmG1::ZmG1/pZmG2::ZmG2). Both ZmG1 and ZmG2 genes were highly expressed in transgenic rice leaves. Moreover, ZmG1 and ZmG2 showed coordinated expression in pZmG1::ZmG1/pZmG2::ZmG2 plants. All Golden2-like (GLK) transgenic plants had higher chlorophyll and protein contents, Rubisco activities and photosynthetic rates per unit leaf area in flag leaves. However, the highest grain yields occurred when maize promoters were used; pZmG1::ZmG1, pZmG2::ZmG2, and pZmG1::ZmG1/pZmG2::ZmG2 transgenic plants showed increases in grain yield by 51%, 47%, and 70%, respectively. In contrast, the pZmUbi::ZmG1 plant produced smaller seeds without yield increases. Transcriptome analysis indicated that maize GLKs act as master regulators promoting the expression of both photosynthesis-related and stress-responsive regulatory genes in both rice shoot and root. Thus, by promoting these important functions under the control of their own promoters, maize GLK1 and GLK2 genes together dramatically improved rice photosynthetic performance and productivity. A similar approach can potentially improve the productivity of many other crops.
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Affiliation(s)
| | | | - Yao-Ming Chang
- Biodiversity Research Center, Academia
Sinica, Taipei 11529, Taiwan
- Institute of Biomedical Sciences, Academia
Sinica, Taipei 11529, Taiwan
| | - Yu-Lun Chang
- Department of Bioagricultural Science, National
Chiayi University, Chiayi 600, Taiwan
| | - Chao-Kang Chang
- Biodiversity Research Center, Academia
Sinica, Taipei 11529, Taiwan
| | - Yi-Cin Huang
- Biodiversity Research Center, Academia
Sinica, Taipei 11529, Taiwan
| | - Yi-Wen Ho
- Biodiversity Research Center, Academia
Sinica, Taipei 11529, Taiwan
| | - Chu-Yin Lin
- Biodiversity Research Center, Academia
Sinica, Taipei 11529, Taiwan
| | - Jun-Ze Zheng
- Department of Bioagricultural Science, National
Chiayi University, Chiayi 600, Taiwan
| | - Wann-Neng Jane
- Institute of Plant and Microbial Biology, Academia
Sinica, Taipei 11529, Taiwan
| | - Chun-Yeung Ng
- Biodiversity Research Center, Academia
Sinica, Taipei 11529, Taiwan
| | - Mei-Yeh Lu
- Biodiversity Research Center, Academia
Sinica, Taipei 11529, Taiwan
| | - I-Ling Lai
- Graduate Institute of Bioresources, National
Pingtung University of Science and Technology, Pingtung 912,
Taiwan
| | - Kin-Ying To
- Agricultural Biotechnology Research Center, Academia
Sinica, Taipei 11529, Taiwan
| | - Wen-Hsiung Li
- Biodiversity Research Center, Academia
Sinica, Taipei 11529, Taiwan
- Department of Ecology and Evolution, University of
Chicago, Chicago, Illinois 60637, USA
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Plitta-Michalak BP, Ramos AA, Pupel P, Michalak M. Oxidative damage and DNA repair in desiccated recalcitrant embryonic axes of Acer pseudoplatanus L. BMC Plant Biol 2022; 22:40. [PMID: 35045819 PMCID: PMC8767751 DOI: 10.1186/s12870-021-03419-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 12/23/2021] [Indexed: 06/14/2023]
Abstract
BACKGROUND Most plants encounter water stress at one or more different stages of their life cycle. The maintenance of genetic stability is the integral component of desiccation tolerance that defines the storage ability and long-term survival of seeds. Embryonic axes of desiccation-sensitive recalcitrant seeds of Acer pseudoplatnus L. were used to investigate the genotoxic effect of desiccation. Alkaline single-cell gel electrophoresis (comet assay) methodology was optimized and used to provide unique insights into the onset and repair of DNA strand breaks and 8-oxo-7,8-dihydroguanine (8-oxoG) formation during progressive steps of desiccation and rehydration. RESULTS The loss of DNA integrity and impairment of damage repair were significant predictors of the viability of embryonic axes. In contrast to the comet assay, automated electrophoresis failed to detect changes in DNA integrity resulting from desiccation. Notably, no significant correlation was observed between hydroxyl radical (٠OH) production and 8-oxoG formation, although the former is regarded to play a major role in guanine oxidation. CONCLUSIONS The high-throughput comet assay represents a sensitive tool for monitoring discrete changes in DNA integrity and assessing the viability status in plant germplasm processed for long-term storage.
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Affiliation(s)
- Beata P. Plitta-Michalak
- Department of Plant Physiology, Genetics and Biotechnology, University of Warmia and Mazury in Olsztyn, Oczapowskiego 1A/103, 10-719 Olsztyn, Poland
| | - Alice A. Ramos
- Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto (U. Porto), Rua de Jorge Viterbo Ferreira 228, 4050-313 Porto, Portugal
- Interdisciplinary Center for Marine and Environmental Research (CIIMAR), University of Porto (U. Porto), Avenida General Norton de Matos, 4450-208 Matosinhos, Portugal
| | - Piotr Pupel
- Department of Plant Physiology, Genetics and Biotechnology, University of Warmia and Mazury in Olsztyn, Oczapowskiego 1A/103, 10-719 Olsztyn, Poland
| | - Marcin Michalak
- Department of Plant Physiology, Genetics and Biotechnology, University of Warmia and Mazury in Olsztyn, Oczapowskiego 1A/103, 10-719 Olsztyn, Poland
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Volcão LM, Halicki PCB, Christ-Ribeiro A, Ramos DF, Badiale-Furlong E, Andreazza R, Bernardi E, da Silva Júnior FMR. Mushroom extract of Lactarius deliciosus (L.) Sf. Gray as biopesticide: Antifungal activity and toxicological analysis. J Toxicol Environ Health A 2022; 85:43-55. [PMID: 34459359 DOI: 10.1080/15287394.2021.1970065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Revised: 08/16/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
Monilinia fructicola (Wint.) Honey is a plant pathogenic fungus that infects stone fruits such as peach, nectarine and plum, which are high demand cultivars found in Brazil. This pathogen may remain latent in the host, showing no apparent signs of disease, and consequently may spread to different countries. The aim of this study was to evaluate the activity of hydroalcoholic extract (HydE) obtained from Lactarius deliciosus (L.) Sf. Gray a mushroom, against M. fructicola phytopathogenic-induced mycelial growth. In addition, the purpose of this study was to examine phytotoxicity attributed to HydE using Brassica oleracea seeds, as well as cytotoxic analysis of this extract on cells of mouse BALB/c monocyte macrophage cell line (J774A.1 cell line) (ATCC TIB-67). The L. deliciosus HydE inhibited fungal growth and reduced phytopathogen mycelial development at a concentration of 1.25 mg/ml. Our results demonstrated that the extract exhibited phytotoxicity as evidenced by (1) interference on germination percentage and rate index, (2) decreased root and initial growth measures, and (3) lower fresh weight of seedlings but no cytotoxicity in Vero cell lines. Data suggest that the use of the L. deliciosus extracts may be beneficial for fungal control without any apparent adverse actions on mouse BALB/c monocyte macrophage cell line (J774A.1 cell line) viability.
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Affiliation(s)
- Lisiane Martins Volcão
- Faculdade de Medicina, Laboratório de Ensaios Farmacológicos e Toxicológicos, Universidade Federal do Rio Grande, Rio Grande, Brasil
| | | | - Anelise Christ-Ribeiro
- Departamento de Química de Alimentos, Laboratório de Micotoxinas e Ciências de Alimentos, Universidade Federal do Rio Grande, Rio Grande, Brasil
| | - Daniela Fernandes Ramos
- Faculdade de Medicina, Núcleo de Desenvolvimento de Novos Fármacos, Universidade Federal do Rio Grande, Rio Grande, Brasil
| | - Eliana Badiale-Furlong
- Departamento de Química de Alimentos, Laboratório de Micotoxinas e Ciências de Alimentos, Universidade Federal do Rio Grande, Rio Grande, Brasil
| | - Robson Andreazza
- Faculdade de Engenharia Ambiental e Sanitária, Universidade Federal de Pelotas, Pelotas, Brasil
| | - Eduardo Bernardi
- Departamento de Microbiologia e Parasitologia, Universidade Federal de Pelotas, Pelotas, Brasil
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Hou S, Man X, Lian B, Ma G, Sun Z, Han L, Yan L, Gao H, Du W, Wang X, Zhang Y, Li H, Han Y. Folate metabolic profiling and expression of folate metabolism-related genes during panicle development in foxtail millet (Setaria italica (L.) P. Beauv). J Sci Food Agric 2022; 102:268-279. [PMID: 34109642 DOI: 10.1002/jsfa.11355] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 04/16/2021] [Accepted: 06/09/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Foxtail millet grain has higher folate content than other cereal crops. However, the folate metabolite content and the expression patterns of folate metabolite-related genes are unknown. RESULTS Liquid chromatography-mass spectrometry was used to investigate 12 folate metabolites in a foxtail millet panicle. The content of total folate and derivatives gradually decreased during panicle development. Polyglutamate 5-formyl-tetrahydrofolate was the major form. Twenty-eight genes involved in the folate metabolic pathway were identified through bioinformatic analysis. These genes in Setaria italica, S. viridis and Zea mays showed genomic collinearity. Phylogenetic analysis revealed that the folate-related genes were closely related among the C4 plants compared to C3 plants. The gene expressions were then studied at three panicle development stages. The gene expression patterns were classified into two groups, namely SiADCL1 and SiGGH as two key enzymes, which are responsible for folate synthesis and degradation; their expression levels were highest at the early panicle development stage, up to 179.11- and 163.88-fold, respectively. Their expression levels had a similar downward trend during panicle development and were significantly positively correlated with the concentration of total folate and folate derivatives. However, SiSHMT3 expression levels were significantly negatively correlated with total folate concentration. CONCLUSION Besides being the major determinants of folate and folate derivatives accumulation, SiADCL1 and SiGGH expression levels are key limiting factors in the foxtail millet panicle. Therefore, SiADCL1 and SiGGH expression levels can be targeted in genetic modification studies to improve folate content in foxtail millet seeds in the future. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Siyu Hou
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
- Shanxi Key Laboratory of Minor Crop Germplasm Innovation and Molecular Breeding, Taiyuan, China
| | - Xiaxia Man
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
| | - Boying Lian
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
| | - Guifang Ma
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
| | - Zhaoxia Sun
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
- Shanxi Key Laboratory of Minor Crop Germplasm Innovation and Molecular Breeding, Taiyuan, China
| | - Lida Han
- Biotechnology Research Institute, Chinese Academy of Agricultural Science, Beijing, China
| | - Lufei Yan
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
| | - Hao Gao
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
| | - Wei Du
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
| | - Xinfang Wang
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
| | - Yijuan Zhang
- College of Life science, Shanxi Agricultural University, Taigu, China
| | - Hongying Li
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
- Shanxi Key Laboratory of Minor Crop Germplasm Innovation and Molecular Breeding, Taiyuan, China
| | - Yuanhuai Han
- College of Agriculture, Institute of Agricultural Bioengineering, Shanxi Agricultural University, Taigu, China
- Shanxi Key Laboratory of Minor Crop Germplasm Innovation and Molecular Breeding, Taiyuan, China
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Dong S, Zhang X, Chu J, Zheng F, Fei L, Dai X, He M. Optimized seeding rate and nitrogen topdressing ratio for simultaneous improvement of grain yield and bread-making quality in bread wheat sown on different dates. J Sci Food Agric 2022; 102:360-369. [PMID: 34143446 DOI: 10.1002/jsfa.11366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 04/10/2021] [Accepted: 06/18/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Sowing date, seeding rate, and nitrogen (N) topdressing ratio have strong effects on grain yield (GY) and bread-making quality (BQ) in bread wheat. Simultaneous improvement in GY and BQ in bread wheat has long been a challenge due to the inverse relationship between GY and grain protein concentration (GPC). In this study, we investigated whether the GY and BQ of bread wheat sown on different dates could be improved simultaneously by optimizing the seeding rate and the N topdressing ratio. RESULTS Delaying sowing beyond a certain period led to decreases in both GY and BQ. Optimizing the seeding rate and N topdressing ratio enhanced the N uptake during pre- and post-anthesis, as well as N remobilization during grain filling for all wheat plants sown on different dates, thereby increasing the GPC and the total N per grain (Ntot ). Consequently, grain protein composition was improved, resulting in an increased glutenin/gliadin ratio, sodium dodecyl sulfate-insoluble glutenin/total glutenin (i.e., glutenin polymerization index), and high-molecular-weight glutenin subunit/ low-molecular-weight glutenin subunit (HMW-GS/LMW-GS) ratio. Increased GPC and improved grain protein composition enhanced BQ. CONCLUSION The mechanism underlying simultaneous improvement in GY and GPC as well as Ntot was the greater increase in N accumulation in grains per unit area relative to increases in GY, or total grain number per unit area. The GY and BQ can be improved simultaneously regardless of sowing date by optimizing the seeding rate and N topdressing ratio via enhanced N uptake and N remobilization into grains. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Shuxin Dong
- National Key Lab. of Crop Biology, Key Lab. of Crop Ecophysiology and Farming System, Ministry of Agriculture, Agronomy College of Shandong Agricultural University, Tai'an, P.R. China
| | - Xiu Zhang
- National Key Lab. of Crop Biology, Key Lab. of Crop Ecophysiology and Farming System, Ministry of Agriculture, Agronomy College of Shandong Agricultural University, Tai'an, P.R. China
| | - Jinpeng Chu
- National Key Lab. of Crop Biology, Key Lab. of Crop Ecophysiology and Farming System, Ministry of Agriculture, Agronomy College of Shandong Agricultural University, Tai'an, P.R. China
| | - Feina Zheng
- National Key Lab. of Crop Biology, Key Lab. of Crop Ecophysiology and Farming System, Ministry of Agriculture, Agronomy College of Shandong Agricultural University, Tai'an, P.R. China
| | - Liwei Fei
- National Key Lab. of Crop Biology, Key Lab. of Crop Ecophysiology and Farming System, Ministry of Agriculture, Agronomy College of Shandong Agricultural University, Tai'an, P.R. China
| | - Xinglong Dai
- National Key Lab. of Crop Biology, Key Lab. of Crop Ecophysiology and Farming System, Ministry of Agriculture, Agronomy College of Shandong Agricultural University, Tai'an, P.R. China
| | - Mingrong He
- National Key Lab. of Crop Biology, Key Lab. of Crop Ecophysiology and Farming System, Ministry of Agriculture, Agronomy College of Shandong Agricultural University, Tai'an, P.R. China
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Nahuelcura J, Ruiz A, Gomez F, Cornejo P. The effect of arbuscular mycorrhizal fungi on the phenolic compounds profile, antioxidant activity and grain yields in wheat cultivars growing under hydric stress. J Sci Food Agric 2022; 102:407-416. [PMID: 34143900 DOI: 10.1002/jsfa.11370] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 05/18/2021] [Accepted: 06/18/2021] [Indexed: 05/27/2023]
Abstract
BACKGROUND Hydric stress affects the production of wheat (Triticum aestivum L.) worldwide, making some tools necessary to cope with the decrease in rainfall. A sustainable alternative is the use of arbuscular mycorrhizal fungi (AMF) as biofertilisers. Here, we analysed the effects of AMF strains adapted or non-adapted to hyper-arid conditions on the phenolic profiles and antioxidant activities of wheat grains from two cultivars with contrasting tolerance to osmotic stress (Ilustre, moderately tolerant; and Maxi, tolerant) grown with and without hydric stress. RESULTS Eight phenolic compounds were detected, apigenin-C-pentoside-C-hexoside I being the most abundant and showing an increase of 80.5% when inoculated with the fungus Funneliformis mosseae (FM) obtained from Atacama Desert under normal irrigation with respect to non-mycorrhizal (NM) plants. NM treatments were associated with higher grain yields. FM showed a noticeable effect on most phenolic compounds, with an increase up to 30.2% in apigenin-C-pentoside-C-hexoside III concentration under hydric stress with respect to normal irrigation, being also responsible for high antioxidant activities such as ABTS (2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) and DPPH (2,2-diphenyl-1-picrylhydrazyl) activities. CONCLUSION Inoculation with FM adapted to hydric stress produced improvements in phenolics composition and antioxidant activities in grains from wheat plants growing under hydric stress conditions, improving their food quality and supporting the development of further studies to determine whether the use of adapted AMF could be a realistic tool to improve grain quality in a scenario of increasing hydric stress conditions. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Javiera Nahuelcura
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Universidad de La Frontera, Temuco, Chile
- Departamento de Ciencias Químicas y Recursos Naturales, Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
| | - Antonieta Ruiz
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Universidad de La Frontera, Temuco, Chile
- Departamento de Ciencias Químicas y Recursos Naturales, Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
| | - Francisca Gomez
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Universidad de La Frontera, Temuco, Chile
- Departamento de Ciencias Químicas y Recursos Naturales, Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
| | - Pablo Cornejo
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Universidad de La Frontera, Temuco, Chile
- Departamento de Ciencias Químicas y Recursos Naturales, Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
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Sangwongchai W, Krusong K, Thitisaksakul M. Salt tolerance at vegetative stage is partially associated with changes in grain quality and starch physicochemical properties of rice exposed to salinity stress at reproductive stage. J Sci Food Agric 2022; 102:370-382. [PMID: 34139029 DOI: 10.1002/jsfa.11367] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 04/29/2021] [Accepted: 06/17/2021] [Indexed: 05/15/2023]
Abstract
BACKGROUND Rice yield and grain quality are highly sensitive to soil salinity. Distinct rice genotypes respond to salinity stress differently. To explore the variation in grain yield and grain trait adaptation to moderate, reproductive-stage salinity stress (4 dS/m electrical conductivity), four rice cultivars differing in degrees of vegetative salt tolerance, including Pokkali (salt-tolerant), RD15 (moderately salt-tolerant), KDML105 (moderately salt-susceptible) and IR29 (salt-susceptible), were examined. RESULTS Grain fertility and 100-grain weight of RD15, KDML105 and IR29, as well as grain morphology of KDML105 and IR29, were significantly disturbed. Interestingly, grain starch accumulation in RD15 and KDML105 was enhanced under stress. However, only RD15 showed changes in starch physicochemical properties, including increased granule diameter, decreased gelatinization peak temperature (Tp ) and decreased retrogradation onset temperature (To ). Notably, Pokkali maintained productivity, grain quality, and starch properties, while the grain quality of IR29 remained unchanged under salinity stress. Multivariate analysis displayed clear separation of productivity, grain morphology, and starch variables of RD15 in the salt-treated group relative to the control group, suggesting that it was the cultivar most impacted by salt stress despite its moderate salt-tolerance at vegetative stage. CONCLUSION Our results demonstrate specific salinity responses among the rice genotypes, and suggest discrepancies between degrees of salt tolerance at vegetative stage versus the ability to maintain both grain quality and starch properties in response to salinity stress imposed at reproductive stage. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Wichian Sangwongchai
- Department of Biochemistry, Faculty of Science, Khon Kaen University, Khon Kaen, Thailand
| | - Kuakarun Krusong
- Structural and Computational Biology Research Unit, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Maysaya Thitisaksakul
- Department of Biochemistry, Faculty of Science, Khon Kaen University, Khon Kaen, Thailand
- Salt-tolerant Rice Research Group, Khon Kaen University, Khon Kaen, Thailand
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Rengasamy N, Othman RY, Che HS, Harikrishna JA. Beyond the PAR spectra: impact of light quality on the germination, flowering, and metabolite content of Stevia rebaudiana (Bertoni). J Sci Food Agric 2022; 102:299-311. [PMID: 34091912 DOI: 10.1002/jsfa.11359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 05/07/2021] [Accepted: 06/06/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Stevia rebaudiana is a high value crop due to the strong commercial demand for its metabolites (steviol glycosides) but has limited geographical cultivation range. In non-native environments with different daylength and light quality, Stevia has low germination rates and early flowering resulting in lower biomass and poor yield of the desired metabolites. In this study, artificial lighting with light-emitting diodes (LEDs) was used to determine if different light quality within and outside of the photosynthetically active radiation (PAR) range can be used to improve germination rates and yields for production of steviol glycosides for the herbal supplement and food industry. RESULTS Plants treated with red and blue light at an intensity of 130 μmol m-2 s-1 supplemented with 5% of UV-A light under a 16-h photoperiod produced the most desirable overall results with a high rate of germination, low percentage of early flowering, and high yields of dry leaf, stevioside and rebaudioside A, 175 days after planting. CONCLUSION While red and blue light combinations are effective for plant growth, the use of supplemental non-PAR irradiation of UV-A wavelength significantly and desirably delayed flowering, enhanced germination, biomass, rebaudioside A and stevioside yields, while supplemental green light improved yield of biomass and rebaudioside A, but not stevioside. Overall, the combination of red, blue and UV-A light resulted in the best overall productivity for Stevia rebaudiana. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Narendren Rengasamy
- Higher Institution Centre of Excellence (HICoE), UM Power Energy Dedicated Advanced Centre (UMPEDAC), Level 4, Wisma R&D University of Malaya, Kuala Lumpur, Malaysia
| | - Rofina Y Othman
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia
- Centre for Research in Biotechnology for Agriculture (CEBAR), University of Malaya, Kuala Lumpur, Malaysia
| | - Hang S Che
- Higher Institution Centre of Excellence (HICoE), UM Power Energy Dedicated Advanced Centre (UMPEDAC), Level 4, Wisma R&D University of Malaya, Kuala Lumpur, Malaysia
| | - Jennifer A Harikrishna
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia
- Centre for Research in Biotechnology for Agriculture (CEBAR), University of Malaya, Kuala Lumpur, Malaysia
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Yu LL, Liu CJ, Peng Y, He ZQ, Xu F. New insights into the role of cyanide in the promotion of seed germination in tomato. BMC Plant Biol 2022; 22:28. [PMID: 35016603 PMCID: PMC8751275 DOI: 10.1186/s12870-021-03405-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 12/14/2021] [Indexed: 05/05/2023]
Abstract
BACKGROUND Cyanide is a natural metabolite that exists widely in plants, and it is speculated to be involved in the regulation of various growth and development processes of plants in addition to being regarded as toxic waste. Previous studies have shown that exogenous cyanide treatment helps to improve seed germination, but the mechanism is still unclear. In this study, tomato (Solanum lycopersicum cv. Alisa Craig) was used as the material, and the effects of cyanide pretreatment at different concentrations on tomato seed germination were investigated. RESULTS The results showed that exogenous application of a lower concentration of cyanide (10 μmol/L KCN) for 12 h strongly increased the tomato seed germination rate. RNA-Seq showed that compared with the control, a total of 15,418 differentially expressed genes (P<0.05) were obtained after pretreatment with KCN for 12 h, and in the next 12 h, a total of 13,425 differentially expressed genes (P<0.05) were regulated. GO and KEGG analyses demonstrated that exogenous KCN pretreatment was involved in regulating the expression (mainly downregulation) of seed storage proteins, thereby accelerating the degradation of stored proteins for seed germination. In addition, KCN pretreatment was also involved in stimulating glycolysis, the TCA cycle and oxidative phosphorylation. Notably, it is shown that KCN acted on the regulation of plant hormone biosynthesis and perception, i.e., down-regulated the gene expression of ABA biosynthesis and signal transduction, but up-regulated the expression of genes related to GA biosynthesis and response. Consistent with this, plant hormone measurements confirmed that the levels of ABA were reduced, but GA levels were induced after pretreatment with KCN. CONCLUSION These findings provide new insights into the regulation of seed germination by cyanide, that is cyanide-mediated seed germination occurs in a time- and dose-dependent manner, and is related to the mobilization of energy metabolism and the regulation of some plant hormone signals.
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Affiliation(s)
- Lu-Lu Yu
- Applied Biotechnology Center, Wuhan University of Bioengineering, Wuhan, 430415, China
| | - Cui-Jiao Liu
- Applied Biotechnology Center, Wuhan University of Bioengineering, Wuhan, 430415, China
| | - Ye Peng
- Applied Biotechnology Center, Wuhan University of Bioengineering, Wuhan, 430415, China
- Biotechnology Research Center, China Three Gorges University, Yichang, 443002, China
| | - Zheng-Quan He
- Biotechnology Research Center, China Three Gorges University, Yichang, 443002, China
| | - Fei Xu
- Applied Biotechnology Center, Wuhan University of Bioengineering, Wuhan, 430415, China.
- Biotechnology Research Center, China Three Gorges University, Yichang, 443002, China.
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Gao Y, Ji J, Zhang Y, Yang N, Zhang M. Biochemical and transcriptomic analyses of the symbiotic interaction between Cremastra appendiculata and the mycorrhizal fungus Coprinellus disseminatus. BMC Plant Biol 2022; 22:15. [PMID: 34983403 PMCID: PMC8725509 DOI: 10.1186/s12870-021-03388-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 12/07/2021] [Indexed: 06/14/2023]
Abstract
BACKGROUND Cremastra appendiculata is a rare terrestrial orchid with a high market value as an ornamental and medicinal plant. However, the species depends entirely on fungi for seed germination under natural conditions. In a previous study, we have successfully isolated and identified the mycorrhizal fungus Coprinellus disseminatus which was able to induce the germination of C. appendiculata seeds. We then speculated that C. disseminatus may do so by breaking the testa imposed dormancy of the seeds. In this study, biochemical and transcriptomic analyses were used to characterize the germination of C. appendiculata seeds, collected at different stages of germination, as affected by C. disseminatus. RESULTS The lignocellulose in the seeds coat of C. appendiculata was degraded by the mycorrhizal fungus resulting in facilitated absorption of water. The rate of decline in lignin content was 67 and 73% at 6 and 12 days after sowing, respectively. The water content increased from 13 to 90% during symbiosis. A total of 15,382 genes showing significantly different levels of expression (log2 FPKM≥2.0, Qvalue≤0.05) were successfully identified among all libraries, where the highest number of DEGs was shared between 6 days versus 0 day after symbiotic germination. Gene annotation results suggested that 15 key genes related water-status, such as DHN gene family and Xero 1 were down-regulated. The genes zeaxanthin epoxidase ZEP, 9-cis-epoxycarotenoid dioxygenase NCED3 and β-carotene hydroxylase involved in the biosynthesis of abscisic acid (ABA) were significantly down-regulated in 6 days as compared to 0 day after symbiotic germination. CONCLUSIONS This work demonstrates that mycorrhizal fungus C. disseminatus can stimulate C. appendiculata seeds germination through a mechanism of breaking the testa imposed dormancy and inducing water absorption of the embryo.
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Affiliation(s)
- Yanyan Gao
- College of Life Sciences, Guizhou University, Guiyang, 550025, Guizhou, China
- Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guiyang, 550025, Guizhou, China
| | - Jun Ji
- College of Life Sciences, Guizhou University, Guiyang, 550025, Guizhou, China
- Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guiyang, 550025, Guizhou, China
| | - Yujin Zhang
- College of Life Sciences, Guizhou University, Guiyang, 550025, Guizhou, China
- Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guiyang, 550025, Guizhou, China
| | - Ningxian Yang
- College of Life Sciences, Guizhou University, Guiyang, 550025, Guizhou, China
- Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guiyang, 550025, Guizhou, China
| | - Mingsheng Zhang
- College of Life Sciences, Guizhou University, Guiyang, 550025, Guizhou, China.
- Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guiyang, 550025, Guizhou, China.
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Wang X, Liu X, Hu Z, Bao S, Xia H, Feng B, Ma L, Zhao G, Zhang D, Hu Y. Essentiality for rice fertility and alternative splicing of OsSUT1. Plant Sci 2022; 314:111065. [PMID: 34895534 DOI: 10.1016/j.plantsci.2021.111065] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 08/20/2021] [Accepted: 09/17/2021] [Indexed: 06/14/2023]
Abstract
Sucrose-proton symporters play important roles in carbohydrate transport during plant growth and development. Their physiological functions have only been partly characterized and their regulation mechanism is largely unclear. Here we report that the knockout of a sucrose transporter gene, OsSUT1, by CRISPR-Cas9 mediated gene editing resulted in a slightly dwarf size and complete infertility of the gene's homozygous mutants. Observation of caryopsis development revealed that the endosperm of OsSUT1 mutants failed to cellularize and did not show any sign of seed-filling. Consistently, OsSUT1 was identified to express strongly in developing caryopsis of wild-type rice, particularly in the nucellar epidermis and aleurone which are critical for the uptake of nutrients into the endosperm. These results indicate that OsSUT1 is indispensable during the rice reproductive stage particularly for caryopsis development. Interestingly, OsSUT1 possesses at least 6 alternative splicing transcripts, including the 4 transcripts deposited previously and the other two identified by us. The differences among these transcripts primarily lie in their coding region of the 3' end and 3' UTR region. Real-time PCR showed that 4 of the 6 transcripts had different expressional patterns during rice vegetative and reproductive growth stages. Given the versatility of the gene, addressing its alternative splicing mechanism may expand our understanding of SUT's function substantially.
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Affiliation(s)
- Xiaowen Wang
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China; College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xiuli Liu
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Zhi Hu
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shuhui Bao
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Huihuang Xia
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Bing Feng
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Lai Ma
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Gengmao Zhao
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Dechun Zhang
- Bio-technology Research Center, China Three Gorges University, Yichang, 443002, China
| | - Yibing Hu
- College of Resources & Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
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da Fonseca-Pereira P, Pham PA, Cavalcanti JHF, Omena-Garcia RP, Barros JAS, Rosado-Souza L, Vallarino JG, Mutwil M, Avin-Wittenberg T, Nunes-Nesi A, Fernie AR, Araújo WL. The Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase is required during normal seed development and germination. Plant J 2022; 109:196-214. [PMID: 34741366 DOI: 10.1111/tpj.15566] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 10/25/2021] [Accepted: 10/28/2021] [Indexed: 06/13/2023]
Abstract
The importance of the alternative donation of electrons to the ubiquinol pool via the electron-transfer flavoprotein/electron-transfer flavoprotein:ubiquinone oxidoreductase (ETF/ETFQO) complex has been demonstrated. However, the functional significance of this pathway during seed development and germination remains to be elucidated. To assess the function of this pathway, we performed a detailed metabolic and transcriptomic analysis of Arabidopsis mutants to test the molecular consequences of a dysfunctional ETF/ETFQO pathway. We demonstrate that the disruption of this pathway compromises seed germination in the absence of an external carbon source and also impacts seed size and yield. Total protein and storage protein content is reduced in dry seeds, whilst sucrose levels remain invariant. Seeds of ETFQO and related mutants were also characterized by an altered fatty acid composition. During seed development, lower levels of fatty acids and proteins accumulated in the etfqo-1 mutant as well as in mutants in the alternative electron donors isovaleryl-CoA dehydrogenase (ivdh-1) and d-2-hydroxyglutarate dehydrogenase (d2hgdh1-2). Furthermore, the content of several amino acids was increased in etfqo-1 mutants during seed development, indicating that these mutants are not using such amino acids as alternative energy source for respiration. Transcriptome analysis revealed alterations in the expression levels of several genes involved in energy and hormonal metabolism. Our findings demonstrated that the alternative pathway of respiration mediated by the ETF/ETFQO complex affects seed germination and development by directly adjusting carbon storage during seed filling. These results indicate a role for the pathway in the normal plant life cycle to complement its previously defined roles in the response to abiotic stress.
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Affiliation(s)
- Paula da Fonseca-Pereira
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
- Max Planck Institute of Molecular Plant Physiology, D-14476, Potsdam-Golm, Germany
| | - Phuong Anh Pham
- Max Planck Institute of Molecular Plant Physiology, D-14476, Potsdam-Golm, Germany
| | - João Henrique F Cavalcanti
- Instituto de Educação, Agricultura e Ambiente, Universidade Federal do Amazonas, Humaitá, Amazonas, Brazil
| | - Rebeca P Omena-Garcia
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Jessica A S Barros
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Laise Rosado-Souza
- Max Planck Institute of Molecular Plant Physiology, D-14476, Potsdam-Golm, Germany
| | - José G Vallarino
- Max Planck Institute of Molecular Plant Physiology, D-14476, Potsdam-Golm, Germany
| | - Marek Mutwil
- School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore
| | - Tamar Avin-Wittenberg
- Department of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Hebrew University of Jerusalem, Givat Ram, Jerusalem, 9190401, Israel
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, D-14476, Potsdam-Golm, Germany
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
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Antony D, Yadav R, Kalimuthu R, Kumuthan MS. Phyto-complexation of galactomannan-stabilized calcium hydroxide and selenium-calcium hydroxide nanocomposite to enhance the seed-priming effect in Vigna radiata. Int J Biol Macromol 2022; 194:933-944. [PMID: 34856219 DOI: 10.1016/j.ijbiomac.2021.11.148] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Revised: 11/15/2021] [Accepted: 11/22/2021] [Indexed: 12/23/2022]
Abstract
The evaluation of nano-priming effect with galactomannan stabilized Phyto-complexed calcium hydroxide (Ca(OH)2), selenium oxyanion‑calcium hydroxide SeO-(Ca(OH)2), and selenium‑calcium hydroxide Se-(Ca(OH)2) nanocomposites was carried out in Vigna radiata (Green gram) seeds. The green source Cassia angustifolia seed rich in galactomannan and other phytoconstituents was detected experimentally and characterized with GC-MS, UV, FT-IR, NMR, XRD, and SEM studies. The highly active galactomannan and other biomolecules, enable their terminal oxygen and hydroxide groups to bind with calcium and selenium ions through bidentate and monodentate chelation, followed by bio-reduction. On the mild-thermal agitation, bio-stabilized (Ca(OH)2), SeO-(Ca(OH)2), and Se-(Ca(OH)2) nanocomposite coated with seed-derived biomolecules were precipitated under an alkaline condition. The size and morphological parameters of bio-fabricated nanocomposites were characterized to exhibit the spherical and hexagonal shape in nanoscale images of size 17.9 nm for (Ca(OH)2), 56.2 nm for SeO-(Ca(OH)2), and 69.3 nm Se-(Ca(OH)2). The sub-standard seed lot of Vigna radiata (Green gram) seeds (71%) was examined using synthesized nanocomposites at various concentrations, and the obtained physiological parameters in seedlings were compared with hydro-primed seeds. The nano-priming action of all the Phyto-complexed nanocomposites was predicted with a positive response, where the porous Se-(Ca(OH)2) possess high efficacy interaction on seed embryos and beneficially results at 90% germination.
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Affiliation(s)
- Dhivya Antony
- Department of Chemistry, Madras Christian College (Affiliated to University of Madras), East Tambaram, Chennai 600 059, Tamil Nadu, India
| | - Rakhi Yadav
- Department of Chemistry, Madras Christian College (Affiliated to University of Madras), East Tambaram, Chennai 600 059, Tamil Nadu, India.
| | - Raja Kalimuthu
- Department of Nano Science and Technology, Tamil Nadu Agricultural University, Coimbatore 641 003, India
| | - Meenachi Sellan Kumuthan
- Department of Nano Science and Technology, Tamil Nadu Agricultural University, Coimbatore 641 003, India
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Zhang M, Li N, Yang W, Liu B. Genome-wide differences in gene expression and alternative splicing in developing embryo and endosperm, and between F1 hybrids and their parental pure lines in sorghum. Plant Mol Biol 2022; 108:1-14. [PMID: 34846608 DOI: 10.1007/s11103-021-01196-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Accepted: 09/20/2021] [Indexed: 06/13/2023]
Abstract
Developing embryo and endosperm of sorghum show substantial and multifaceted differences in gene expression and alternative splicing, which are potentially relevant to heterosis. Differential regulation of gene expression and alternative splicing (AS) are major molecular mechanisms dictating plant growth and development, as well as underpinning heterosis in F1 hybrids. Here, using deep RNA-sequencing we analyzed differences in genome-wide gene expression and AS between developing embryo and endosperm, and between F1 hybrids and their pure-line parents in sorghum. We uncover dramatic differences in both gene expression and AS between embryo and endosperm with respect to gene features and functions, which are consistent with the fundamentally different biological roles of the two tissues. Accordingly, F1 hybrids showed substantial and multifaceted differences in gene expression and AS compared with their pure-line parents, again with clear tissue specificities including extents of difference, genes involved and functional enrichments. Our results provide useful transcriptome resources as well as novel insights for further elucidation of seed yield heterosis in sorghum and related crops.
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Affiliation(s)
- Meishan Zhang
- Department of Agronomy, Jilin Agricultural University, Changchun, 130118, People's Republic of China
| | - Ning Li
- Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, 130024, People's Republic of China
| | - Weiguang Yang
- Department of Agronomy, Jilin Agricultural University, Changchun, 130118, People's Republic of China.
| | - Bao Liu
- Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, 130024, People's Republic of China.
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