251
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Maeda S, Taketsugu T, Morokuma K, Ohno K. Anharmonic Downward Distortion Following for Automated Exploration of Quantum Chemical Potential Energy Surfaces. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2014. [DOI: 10.1246/bcsj.20140189] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University
| | | | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University
| | - Koichi Ohno
- Graduate School of Science, Tohoku University
- Institute for Quantum Chemical Exploration
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252
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Tsai PY, Lin KC. Insight into the Photodissociation Dynamical Feature of Conventional Transition State and Roaming Pathways by an Impulsive Model. J Phys Chem A 2014; 119:29-38. [DOI: 10.1021/jp511000t] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Po-Yu Tsai
- Department
of Chemistry, National Taiwan University, and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
| | - King-Chuen Lin
- Department
of Chemistry, National Taiwan University, and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
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253
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Fernando R, Dey A, Broderick BM, Fu B, Homayoon Z, Bowman JM, Suits AG. Visible/Infrared Dissociation of NO3: Roaming in the Dark or Roaming on the Ground? J Phys Chem A 2014; 119:7163-8. [DOI: 10.1021/jp509902d] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ravin Fernando
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Arghya Dey
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Bernadette M. Broderick
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Bina Fu
- State Key Laboratory
of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Zahra Homayoon
- Department
of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, 201 Dowman Drive, Atlanta, Georgia 30322, United States
| | - Joel M. Bowman
- Department
of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, 201 Dowman Drive, Atlanta, Georgia 30322, United States
| | - Arthur G. Suits
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
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254
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Martínez-Núñez E. An automated method to find transition states using chemical dynamics simulations. J Comput Chem 2014; 36:222-34. [DOI: 10.1002/jcc.23790] [Citation(s) in RCA: 121] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Accepted: 11/05/2014] [Indexed: 02/01/2023]
Affiliation(s)
- Emilio Martínez-Núñez
- Departamento de Química Física and Centro Singular de Investigación en Química Biológica y Materiales Moleculares; Campus Vida, Universidade de Santiago de Compostela; 15782 Santiago de Compostela Spain
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255
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Lin KC, Tsai PY. Molecular halogen elimination from halogen-containing compounds in the atmosphere. Phys Chem Chem Phys 2014; 16:7184-98. [PMID: 24622955 DOI: 10.1039/c3cp54828g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Atmospheric halogen chemistry has drawn much attention, because the halogen atom (X) playing a catalytic role may cause severe stratospheric ozone depletion. Atomic X elimination from X-containing hydrocarbons is recognized as the major primary dissociation process upon UV-light irradiation, whereas direct elimination of the X2 product has been seldom discussed or remained a controversial issue. This account is intended to review the detection of X2 primary products using cavity ring-down absorption spectroscopy in the photolysis at 248 nm of a variety of X-containing compounds, focusing on bromomethanes (CH2Br2, CF2Br2, CHBr2Cl, and CHBr3), dibromoethanes (1,1-C2H4Br2 and 1,2-C2H4Br2) and dibromoethylenes (1,1-C2H2Br2 and 1,2-C2H2Br2), diiodomethane (CH2I2), thionyl chloride (SOCl2), and sulfuryl chloride (SO2Cl2), along with a brief discussion on acyl bromides (BrCOCOBr and CH2BrCOBr). The optical spectra, quantum yields, and vibrational population distributions of the X2 fragments have been characterized, especially for Br2 and I2. With the aid of ab initio calculations of potential energies and rate constants, the detailed photodissociation mechanisms may be comprehended. Such studies are fundamentally important to gain insight into the dissociation dynamics and may also practically help to assess the halogen-related environmental variation.
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Affiliation(s)
- King-Chuen Lin
- Department of Chemistry, National Taiwan University, Taipei, and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan.
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256
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Prozument K, Suleimanov YV, Buesser B, Oldham JM, Green WH, Suits AG, Field RW. A Signature of Roaming Dynamics in the Thermal Decomposition of Ethyl Nitrite: Chirped-Pulse Rotational Spectroscopy and Kinetic Modeling. J Phys Chem Lett 2014; 5:3641-3648. [PMID: 26278732 DOI: 10.1021/jz501758p] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Chirped-pulse (CP) Fourier transform rotational spectroscopy is uniquely suited for near-universal quantitative detection and structural characterization of mixtures that contain multiple molecular and radical species. In this work, we employ CP spectroscopy to measure product branching and extract information about the reaction mechanism, guided by kinetic modeling. Pyrolysis of ethyl nitrite, CH3CH2ONO, is studied in a Chen type flash pyrolysis reactor at temperatures of 1000-1800 K. The branching between HNO, CH2O, and CH3CHO products is measured and compared to the kinetic models generated by the Reaction Mechanism Generator software. We find that roaming CH3CH2ONO → CH3CHO + HNO plays an important role in the thermal decomposition of ethyl nitrite, with its rate, at 1000 K, comparable to that of the radical elimination channel CH3CH2ONO → CH3CH2O + NO. HNO is a signature of roaming in this system.
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Affiliation(s)
| | | | - Beat Buesser
- §IBM Research, Smarter Cities Technology Centre, Dublin 15, Ireland
| | - James M Oldham
- ∥Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | | | - Arthur G Suits
- ∥Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
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257
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Xie J, Otto R, Mikosch J, Zhang J, Wester R, Hase WL. Identification of atomic-level mechanisms for gas-phase X- + CH3Y SN2 reactions by combined experiments and simulations. Acc Chem Res 2014; 47:2960-9. [PMID: 25120237 DOI: 10.1021/ar5001764] [Citation(s) in RCA: 131] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
For the traditional model of gas-phase X(-) + CH3Y SN2 reactions, C3v ion-dipole pre- and postreaction complexes X(-)---CH3Y and XCH3---Y(-), separated by a central barrier, are formed. Statistical intramolecular dynamics are assumed for these complexes, so that their unimolecular rate constants are given by RRKM theory. Both previous simulations and experiments have shown that the dynamics of these complexes are not statistical and of interest is how these nonstatistical dynamics affect the SN2 rate constant. This work also found there was a transition from an indirect, nonstatistical, complex forming mechanism, to a direct mechanism, as either the vibrational and/or relative translational energy of the reactants was increased. The current Account reviews recent collaborative studies involving molecular beam ion-imaging experiments and direct (on-the-fly) dynamics simulations of the SN2 reactions for which Cl(-), F(-), and OH(-) react with CH3I. Also considered are reactions of the microsolvated anions OH(-)(H2O) and OH(-)(H2O)2 with CH3I. These studies have provided a detailed understanding of the atomistic mechanisms for these SN2 reactions. Overall, the atomistic dynamics for the Cl(-) + CH3I SN2 reaction follows those found in previous studies. The reaction is indirect, complex forming at low reactant collision energies, and then there is a transition to direct reaction between 0.2 and 0.4 eV. The direct reaction may occur by rebound mechanism, in which the ClCH3 product rebounds backward from the I(-) product or a stripping mechanism in which Cl(-) strips CH3 from the I atom and scatters in the forward direction. A similar indirect to direct mechanistic transition was observed in previous work for the Cl(-) + CH3Cl and Cl(-) + CH3Br SN2 reactions. At the high collision energy of 1.9 eV, a new indirect mechanism, called the roundabout, was discovered. For the F(-) + CH3I reaction, there is not a transition from indirect to direct reaction as Erel is increased. The indirect mechanism, with prereaction complex formation, is important at all the Erel investigated, contributing up ∼60% of the reaction. The remaining direct reaction occurs by the rebound and stripping mechanisms. Though the potential energy curve for the OH(-) + CH3I reaction is similar to that for F(-) + CH3I, the two reactions have different dynamics. They are akin, in that for both there is not a transition from an indirect to direct reaction. However, for F(-) + CH3I indirect reaction dominates at all Erel, but it is less important for OH(-) + CH3I and becomes negligible as Erel is increased. Stripping is a minor channel for F(-) + CH3I, but accounts for more than 60% of the OH(-) + CH3I reaction at high Erel. Adding one or two H2O molecules to OH(-) alters the reaction dynamics from that for unsolvated OH(-). Adding one H2O molecule enhances indirect reaction at low Erel, and changes the reaction mechanism from primarily stripping to rebound at high Erel. With two H2O molecules the dynamics is indirect and isotropic at all collision energies.
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Affiliation(s)
- Jing Xie
- Department
of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Rico Otto
- Department
of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States
| | - Jochen Mikosch
- Max-Born-Institute, Max-Born-Strasse
2A, D-12489 Berlin, Germany
| | - Jiaxu Zhang
- Institute
of Theoretical and Simulational Chemistry Academy of Fundamental and
Interdisciplinary Sciences, Harbin Institute of Technology, Harbin 150080, P. R. China
| | - Roland Wester
- Institut
für Ionenphysik and Angewandte Physik, Universität Innsbruck, Technikerstrasse 25/3, A-6020 Innsbruck, Austria
| | - William L. Hase
- Department
of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
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258
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Isegawa M, Liu F, Maeda S, Morokuma K. Complete active space second order perturbation theory (CASPT2) study of N(²D) + H₂O reaction paths on D₁ and D₀ potential energy surfaces: direct and roaming pathways. J Chem Phys 2014; 141:154303. [PMID: 25338892 DOI: 10.1063/1.4897633] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report reaction paths starting from N((2)D) + H2O for doublet spin states, D0 and D1. The potential energy surfaces are explored in an automated fashion using the global reaction route mapping strategy. The critical points and reaction paths have been fully optimized at the complete active space second order perturbation theory level taking all valence electrons in the active space. In addition to direct dissociation pathways that would be dominant, three roaming processes, two roaming dissociation, and one roaming isomerization: (1) H2ON → H-O(H)N → H-HON → NO((2)Π) + H2, (2) cis-HNOH → HNO-H → H-HNO → NO + H2, (3) H2NO → H-HNO → HNO-H → trans-HNOH, are confirmed on the D0 surface.
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Affiliation(s)
- Miho Isegawa
- Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Kyoto 606-8103, Japan
| | - Fengyi Liu
- Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Kyoto 606-8103, Japan
| | - Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Kyoto 606-8103, Japan
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259
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260
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Lu Z, Chang YC, Yin QZ, Ng CY, Jackson WM. Photochemistry. Evidence for direct molecular oxygen production in CO₂ photodissociation. Science 2014; 346:61-4. [PMID: 25278605 DOI: 10.1126/science.1257156] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Photodissociation of carbon dioxide (CO2) has long been assumed to proceed exclusively to carbon monoxide (CO) and oxygen atom (O) primary products. However, recent theoretical calculations suggested that an exit channel to produce C + O2 should also be energetically accessible. Here we report the direct experimental evidence for the C + O2 channel in CO2 photodissociation near the energetic threshold of the C((3)P) + O2(X(3)Σ(g)(-)) channel with a yield of 5 ± 2% using vacuum ultraviolet laser pump-probe spectroscopy and velocity-map imaging detection of the C((3)PJ) product between 101.5 and 107.2 nanometers. Our results may have implications for nonbiological oxygen production in CO2-heavy atmospheres.
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Affiliation(s)
- Zhou Lu
- Department of Chemistry, University of California, Davis, CA 95616, USA
| | - Yih Chung Chang
- Department of Chemistry, University of California, Davis, CA 95616, USA
| | - Qing-Zhu Yin
- Department of Earth and Planetary Sciences, University of California, Davis, CA 95616, USA
| | - C Y Ng
- Department of Chemistry, University of California, Davis, CA 95616, USA.
| | - William M Jackson
- Department of Chemistry, University of California, Davis, CA 95616, USA.
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261
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Asatryan R, Ruckenstein E. Dihydrogen Catalysis: A Remarkable Avenue in the Reactivity of Molecular Hydrogen. CATALYSIS REVIEWS-SCIENCE AND ENGINEERING 2014. [DOI: 10.1080/01614940.2014.953356] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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262
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Joalland B, Shi Y, Estillore AD, Kamasah A, Mebel AM, Suits AG. Dynamics of chlorine atom reactions with hydrocarbons: insights from imaging the radical product in crossed beams. J Phys Chem A 2014; 118:9281-95. [PMID: 25076054 DOI: 10.1021/jp504804n] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present a comprehensive overview of our ongoing studies applying dc slice imaging in crossed molecular beams to probe the dynamics of chlorine atom reactions with polyatomic hydrocarbons. Our approach consists in measuring the full velocity-flux contour maps of the radical products using vacuum ultraviolet "soft" photoionization at 157 nm. Our overall goal is to extend the range of chemical dynamics investigations from simple triatomic or tetraatomic molecules to systematic investigations of a sequence of isomers or a homologous series of reactants of intermediate size. These experimental investigations are augmented by high-level ab initio calculations which, taken together, reveal trends in product energy and angular momentum partitioning and offer deep insight into the reaction mechanisms as a function of structure, bonding patterns, and kinematics. We explore these issues in alkanes, for which only direct reactive encounters are found, and in unsaturated hydrocarbons, for which an addition-elimination mechanism competes with direct abstraction. The results for alkene addition-elimination in particular suggest a new view of these reactions: The only pathway to HCl elimination is accessed by means of roaming excursions of the Cl atom from the strongly bound adduct.
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Affiliation(s)
- Baptiste Joalland
- Department of Chemistry, Wayne State University , Detroit, Michigan 48202, United States
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263
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Pu M, Privalov T. How Frustrated Lewis Acid/Base Systems Pass through Transition-State Regions: H2Cleavage by [tBu3P/B(C6F5)3]. Chemphyschem 2014; 15:2936-44. [DOI: 10.1002/cphc.201402450] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2014] [Indexed: 11/07/2022]
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264
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265
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Rodrigo CP, Sutradhar S, Reisler H. Imaging Studies of Excited and Dissociative States of Hydroxymethylene Produced in the Photodissociation of the Hydroxymethyl Radical. J Phys Chem A 2014; 118:11916-25. [DOI: 10.1021/jp505108k] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Chirantha P. Rodrigo
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Subhasish Sutradhar
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Hanna Reisler
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
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266
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Isegawa M, Liu F, Maeda S, Morokuma K. Ab initio reaction pathways for photodissociation and isomerization of nitromethane on four singlet potential energy surfaces with three roaming paths. J Chem Phys 2014; 140:244310. [DOI: 10.1063/1.4883916] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Affiliation(s)
- Miho Isegawa
- Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
| | - Fengyi Liu
- Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
| | - Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
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267
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Jankunas J, Bertsche B, Jachymski K, Hapka M, Osterwalder A. Dynamics of gas phase Ne* + NH3 and Ne* + ND3 Penning ionisation at low temperatures. J Chem Phys 2014; 140:244302. [PMID: 24985633 DOI: 10.1063/1.4883517] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Justin Jankunas
- Institute for Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Benjamin Bertsche
- Institute for Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | | | - Michał Hapka
- Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland
| | - Andreas Osterwalder
- Institute for Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
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268
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Zhang ZG, Chen ZC, Zhang CM, Jin YL, Zhang Q, Chen Y, Huang CS, Yang XM. Ion-Velocity Map Imaging Study of Photodissociation Dynamics of Acetaldehyde. CHINESE J CHEM PHYS 2014. [DOI: 10.1063/1674-0068/27/03/249-255] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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269
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Preston TJ, Dunning GT, Orr-Ewing AJ, Vázquez SA. Direct and Indirect Hydrogen Abstraction in Cl + Alkene Reactions. J Phys Chem A 2014; 118:5595-607. [DOI: 10.1021/jp5042734] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Thomas J. Preston
- School of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, United Kingdom
| | - Greg T. Dunning
- School of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, United Kingdom
| | - Andrew J. Orr-Ewing
- School of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, United Kingdom
| | - Saulo A. Vázquez
- Departamento de Química
Física and Centro Singular de Investigación Química
Biológica y Materiales Moleculares, Campus Vida, Universidad de Santiago de Compostela, 15782 Santiago
de Compostela, Spain
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270
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271
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Morajkar P, Bossolasco A, Schoemaecker C, Fittschen C. Photolysis of CH3CHO at 248 nm: Evidence of triple fragmentation from primary quantum yield of CH3 and HCO radicals and H atoms. J Chem Phys 2014; 140:214308. [DOI: 10.1063/1.4878668] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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272
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Joalland B, Shi Y, Kamasah A, Suits AG, Mebel AM. Roaming dynamics in radical addition–elimination reactions. Nat Commun 2014; 5:4064. [DOI: 10.1038/ncomms5064] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2014] [Accepted: 05/06/2014] [Indexed: 11/09/2022] Open
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273
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Kim HR. Excursion, Roaming and Migration of Hydrogen Atom during Dissociation of Formaldehyde. B KOREAN CHEM SOC 2014. [DOI: 10.5012/bkcs.2014.35.5.1285] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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274
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Leavitt CM, Moradi CP, Stanton JF, Douberly GE. Communication: Helium nanodroplet isolation and rovibrational spectroscopy of hydroxymethylene. J Chem Phys 2014; 140:171102. [DOI: 10.1063/1.4874850] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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275
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Pu M, Privalov T. Uncovering the role of intra- and intermolecular motion in frustrated Lewis acid/base chemistry: ab initio molecular dynamics study of CO2 binding by phosphorus/boron frustrated Lewis pair [tBu3P/B(C6F5)3]. Inorg Chem 2014; 53:4598-609. [PMID: 24735335 DOI: 10.1021/ic500284q] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The role of the intra- and intermolecular motion, i.e., molecular vibrations and the relative motion of reactants, remains largely unexplored in the frustrated Lewis acid/base chemistry. Here, we address the issue with the ab initio molecular dynamics (AIMD) study of CO2 binding by a Lewis acid (LA) and a Lewis base (LB), i.e., tBu3P + CO2 + B(C6F5)3 → tBu3P-C(O)O-B(C6F5)3 ([1]). Reasonably large ensemble of AIMD trajectories propagated at 300 K from structures in the saddle region as well as trajectories propagated directly from the reactants region revealed an effect arising from significant recrossing of the saddle area. The effect is that transient complexes composed of weakly interacting reactants nearly cease to progress along the segment of the minimum energy pathway (MEP) at the saddle region for a (subpicosecond) period of time during which the dominant factor is the light-to-heavy type of relative motion of the vibrating reactants, i.e., the "bouncing"-like movement of CO2 with respect to much heavier phosphine and borane as main contributor to the mode that is perpendicular to the MEP-direction. In terms of how P···C and B···O distances change with time, the roaming-like patterns of typical AIMD trajectories, reactive and nonreactive alike, extend far beyond the saddle region. In addition to the dynamical portrayal of [1], we provide the energy-landscape perspective that takes into account the hierarchy of time scales. The verifiable implication of the effect found here is that the isotopically substituted (heavier) LB/LA "pair" should be less reactive that the "normal" and thus lighter counterpart.
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Affiliation(s)
- Maoping Pu
- Department of Organic Chemistry, Stockholm University , Arrhenius Laboratory, Stockholm 10691, Sweden
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276
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Affiliation(s)
- Joel M. Bowman
- Department of Chemistry, Emory University, Atlanta, GA, USA
- Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, GA, USA
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277
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Craven GT, Bartsch T, Hernandez R. Persistence of transition-state structure in chemical reactions driven by fields oscillating in time. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:040801. [PMID: 24827174 DOI: 10.1103/physreve.89.040801] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2013] [Indexed: 06/03/2023]
Abstract
Chemical reactions subjected to time-varying external forces cannot generally be described through a fixed bottleneck near the transition-state barrier or dividing surface. A naive dividing surface attached to the instantaneous, but moving, barrier top also fails to be recrossing-free. We construct a moving dividing surface in phase space over a transition-state trajectory. This surface is recrossing-free for both Hamiltonian and dissipative dynamics. This is confirmed even for strongly anharmonic barriers using simulation. The power of transition-state theory is thereby applicable to chemical reactions and other activated processes even when the bottlenecks are time dependent and move across space.
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Affiliation(s)
- Galen T Craven
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | - Thomas Bartsch
- Department of Mathematical Sciences, Loughborough University, Loughborough LE11 3TU, United Kingdom
| | - Rigoberto Hernandez
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
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278
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Li J, Guo H. Mode specificity and product energy disposal in unimolecular reactions: insights from the sudden vector projection model. J Phys Chem A 2014; 118:2419-25. [PMID: 24617859 DOI: 10.1021/jp501255t] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A simple model is proposed to predict mode specificity and product energy disposal in unimolecular dissociation reactions. This so-called Sudden Vector Projection (SVP) model quantifies the coupling of a reactant or product mode with the reaction coordinate at the transition state by projecting the corresponding normal mode vector onto the imaginary frequency mode at the saddle point. Due to the sudden assumption, SVP predictions for mode specificity are expected to be valid only when the reactant molecule has weak intermodal coupling. On the other hand, the sudden limit is generally satisfied for its predictions of product energy disposal in unimolecular reactions with a tight barrier. The SVP model is applied to several prototypical systems and the agreement with available experimental and theoretical results is satisfactory.
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Affiliation(s)
- Jun Li
- Department of Chemistry and Chemical Biology, University of New Mexico , Albuquerque, New Mexico 87131, United States
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279
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von Zastrow A, Onvlee J, Vogels SN, Groenenboom GC, van der Avoird A, van de Meerakker SYT. State-resolved diffraction oscillations imaged for inelastic collisions of NO radicals with He, Ne and Ar. Nat Chem 2014; 6:216-21. [DOI: 10.1038/nchem.1860] [Citation(s) in RCA: 92] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2013] [Accepted: 12/20/2013] [Indexed: 11/09/2022]
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280
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Dey A, Fernando R, Abeysekera C, Homayoon Z, Bowman JM, Suits AG. Photodissociation dynamics of nitromethane and methyl nitrite by infrared multiphoton dissociation imaging with quasiclassical trajectory calculations: Signatures of the roaming pathway. J Chem Phys 2014; 140:054305. [DOI: 10.1063/1.4862691] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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281
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Harabuchi Y, Maeda S, Taketsugu T, Ohno K. Direct Pathway for Water–Gas Shift Reaction in Gas Phase. CHEM LETT 2014. [DOI: 10.1246/cl.130940] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yu Harabuchi
- Department of Chemistry, Faculty of Science, Hokkaido University
| | - Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University
| | | | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University
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282
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Dames EE. Master Equation Modeling of the Unimolecular Decompositions of α-Hydroxyethyl (CH3
CHOH) and Ethoxy (CH3
CH2
O) Radicals. INT J CHEM KINET 2014. [DOI: 10.1002/kin.20844] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Enoch E. Dames
- High-Temperature Gasdynamics Laboratory; Department of Mechanical Engineering; Stanford University Stanford CA 94305
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283
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Hong YJ, Tantillo DJ. Biosynthetic consequences of multiple sequential post-transition-state bifurcations. Nat Chem 2014; 6:104-11. [PMID: 24451585 DOI: 10.1038/nchem.1843] [Citation(s) in RCA: 127] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2013] [Accepted: 12/05/2013] [Indexed: 11/09/2022]
Abstract
Selectivity in chemical reactions that form complex molecular architectures from simpler precursors is usually rationalized by comparing competing transition-state structures that lead to different possible products. Herein we describe a system for which a single transition-state structure leads to the formation of many isomeric products via pathways that feature multiple sequential bifurcations. The reaction network described connects the pimar-15-en-8-yl cation to miltiradiene, a tricyclic diterpene natural product, and isomers via cyclizations and/or rearrangements. The results suggest that the selectivity of the reaction is controlled by (post-transition-state) dynamic effects, that is, how the carbocation structure changes in response to the distribution of energy in its vibrational modes. The inherent dynamical effects revealed herein (characterized through quasiclassical direct dynamics calculations using density functional theory) have implications not only for the general principles of selectivity prediction in systems with complex potential energy surfaces, but also for the mechanisms of terpene synthase enzymes and their evolution. These findings redefine the challenges faced by nature in controlling the biosynthesis of complex natural products.
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Affiliation(s)
- Young Joo Hong
- Department of Chemistry, University of California-Davis, One Shields Avenue, Davis, California 95616, USA
| | - Dean J Tantillo
- Department of Chemistry, University of California-Davis, One Shields Avenue, Davis, California 95616, USA
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284
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Klippenstein SJ, Pande VS, Truhlar DG. Chemical Kinetics and Mechanisms of Complex Systems: A Perspective on Recent Theoretical Advances. J Am Chem Soc 2014; 136:528-46. [DOI: 10.1021/ja408723a] [Citation(s) in RCA: 187] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Stephen J. Klippenstein
- Chemical
Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
| | - Vijay S. Pande
- Department
of Chemistry and Structural Biology, Stanford University, Stanford, California 94305, United States
| | - Donald G. Truhlar
- Department
of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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285
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Tsai PY, Hung KC, Li HK, Lin KC. Photodissociation of Propionaldehyde at 248 nm: Roaming Pathway as an Increasingly Important Role in Large Aliphatic Aldehydes. J Phys Chem Lett 2014; 5:190-195. [PMID: 26276201 DOI: 10.1021/jz402329g] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Time-resolved Fourier transform infrared emission spectroscopy is employed in the photolysis of propionaldehyde (CH3CH2CHO) at 248 nm to characterize the role of the roaming pathway. High-resolution spectra of CO are analyzed to yield a single Boltzmann rotational distribution for each vibrational level (ν = 1-4) with small rotational and large vibrational energy disposals. A roaming saddle point is found containing two far separated moieties of HCO and CH3CH2 with a weak interaction between them. Quasiclassical trajectory calculations on this configuration yield the CO energy flow behavior, consistent with the findings. The rate constant along the roaming pathway is evaluated to be larger by >1-2 orders of magnitude than those along tight transition state or three-body dissociation pathways. This work implies that the roaming mechanism plays an increasingly important role in aliphatic aldehydes as the molecular size becomes larger.
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Affiliation(s)
- Po-Yu Tsai
- Department of Chemistry, National Taiwan University and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
| | - Kai-Chan Hung
- Department of Chemistry, National Taiwan University and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
| | - Hou-Kuan Li
- Department of Chemistry, National Taiwan University and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
| | - King-Chuen Lin
- Department of Chemistry, National Taiwan University and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
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286
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Tsai PY, Chao MH, Kasai T, Lin KC, Lombardi A, Palazzetti F, Aquilanti V. Roads leading to roam. Role of triple fragmentation and of conical intersections in photochemical reactions: experiments and theory on methyl formate. Phys Chem Chem Phys 2014; 16:2854-65. [DOI: 10.1039/c3cp53792g] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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287
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Pemberton RP, Tantillo DJ. Lifetimes of carbocations encountered along reaction coordinates for terpene formation. Chem Sci 2014. [DOI: 10.1039/c4sc00674g] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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288
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Poisson L, Nandi D, Soep B, Hochlaf M, Boggio-Pasqua M, Mestdagh JM. A roaming wavepacket in the dynamics of electronically excited 2-hydroxypyridine. Phys Chem Chem Phys 2014; 16:581-7. [DOI: 10.1039/c3cp52923a] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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289
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Rodríguez JD, González MG, Rubio-Lago L, Bañares L. A velocity map imaging study of the photodissociation of the à state of ammonia. Phys Chem Chem Phys 2014; 16:406-13. [DOI: 10.1039/c3cp53523a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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290
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Kasai T, Che DC, Okada M, Tsai PY, Lin KC, Palazzetti F, Aquilanti V. Directions of chemical change: experimental characterization of the stereodynamics of photodissociation and reactive processes. Phys Chem Chem Phys 2014; 16:9776-90. [DOI: 10.1039/c4cp00464g] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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291
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Lee KLK, Quinn MS, Maccarone AT, Nauta K, Houston PL, Reid SA, Jordan MJT, Kable SH. Two roaming pathways in the photolysis of CH3CHO between 328 and 308 nm. Chem Sci 2014. [DOI: 10.1039/c4sc02266a] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
We attribute the two product-state distributions previously seen in CH3CHO photodissociation to CH3-roaming and H-roaming, unifying all previous experimental results.
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Affiliation(s)
- Kin Long K. Lee
- School of Chemistry
- University of New South Wales
- Kensington, Australia
| | - Mitchell S. Quinn
- School of Chemistry
- University of New South Wales
- Kensington, Australia
| | | | - Klaas Nauta
- School of Chemistry
- University of New South Wales
- Kensington, Australia
| | - Paul L. Houston
- School of Chemistry and Biochemistry
- Georgia Institute of Technology
- Atlanta, USA
| | - Scott A. Reid
- School of Chemistry
- University of Sydney
- Sydney, Australia
| | | | - Scott H. Kable
- School of Chemistry
- University of New South Wales
- Kensington, Australia
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292
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Mauguière FA, Collins P, Ezra GS, Farantos SC, Wiggins S. Multiple transition states and roaming in ion–molecule reactions: A phase space perspective. Chem Phys Lett 2014. [DOI: 10.1016/j.cplett.2013.12.051] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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293
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Abstract
Previous studies on the photodissociation of C2H5 reported rate constants for H-atom formation several orders of magnitude smaller than that predicted by Rice-Ramsperger-Kassel-Marcus (RRKM) theory. This Letter provides a potential explanation for this anomaly, based on direct trajectory calculations of C2H5 dissociation. The trajectories reveal the existence of a roaming dissociation channel that leads to the formation of C2H3 and H2. This channel is found to proceed over the ridge between the transition state of H-atom elimination and that of bimolecular H-abstraction. The formed C2H3 radical can subsequently dissociate to C2H2 and a H atom; this secondary dissociation is suggested to be a potential reason for the unexpectedly slow H-atom formation observed in the photodissociation experiments.
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Affiliation(s)
- Akira Matsugi
- National Institute of Advanced Industrial Science and Technology, 16-1 Onogawa, Tsukuba, Ibaraki 305-8569, Japan
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294
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Collins P, Carpenter BK, Ezra GS, Wiggins S. Nonstatistical dynamics on potentials exhibiting reaction path bifurcations and valley-ridge inflection points. J Chem Phys 2013; 139:154108. [DOI: 10.1063/1.4825155] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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295
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McKown BG, Ceriotti M, Womack CC, Kamarchik E, Butler LJ, Bowman JM. Effects of High Angular Momentum on the Unimolecular Dissociation of CD2CD2OH: Theory and Comparisons with Experiment. J Phys Chem A 2013; 117:10951-63. [DOI: 10.1021/jp407913t] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Benjamin G. McKown
- Department
of Chemistry and the James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
| | - Michele Ceriotti
- Institute
of Materials, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Caroline C. Womack
- Department
of Chemistry and the James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
| | - Eugene Kamarchik
- Combustion
Research Facility, Sandia National Laboratories, Livermore, California 94551, United States
| | - Laurie J. Butler
- Department
of Chemistry and the James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
| | - Joel M. Bowman
- Cherry
L. Emerson Center for Scientific Computation, Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
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296
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Hobday N, Quinn MS, Nauta K, Andrews DU, Jordan MJT, Kable SH. Experimental and Theoretical Investigation of Triple Fragmentation in the Photodissociation Dynamics of H2CO. J Phys Chem A 2013; 117:12091-103. [DOI: 10.1021/jp404895y] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nicholas Hobday
- School of Chemistry, University of Sydney, Sydney NSW 2006, Australia
| | - Mitch S. Quinn
- School of Chemistry, University of Sydney, Sydney NSW 2006, Australia
| | - Klaas Nauta
- School of Chemistry, University of Sydney, Sydney NSW 2006, Australia
| | - Duncan U. Andrews
- School of Chemistry, University of Sydney, Sydney NSW 2006, Australia
| | | | - Scott H. Kable
- School of Chemistry, University of Sydney, Sydney NSW 2006, Australia
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297
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Andrews DU, Kable SH, Jordan MJT. A Phase Space Theory for Roaming Reactions. J Phys Chem A 2013; 117:7631-42. [DOI: 10.1021/jp405582z] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Scott H. Kable
- School of
Chemistry, University of Sydney, NSW 2006,
Australia
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298
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Chatterley AS, Roberts GM, Stavros VG. Timescales for adiabatic photodissociation dynamics from the à state of ammonia. J Chem Phys 2013; 139:034318. [DOI: 10.1063/1.4811672] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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299
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Homayoon Z, Bowman JM, Dey A, Abeysekera C, Fernando R, Suits AG. Experimental and Theoretical Studies of Roaming Dynamics in the Unimolecular Dissociation of CH3NO2to CH3O+NO. Z PHYS CHEM 2013. [DOI: 10.1524/zpch.2013.0409] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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300
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Xiao H, Maeda S, Morokuma K. Theoretical Study on the Photodissociation of Methylamine Involving S1, T1, and S0 States. J Phys Chem A 2013; 117:5757-64. [DOI: 10.1021/jp4042952] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hongyan Xiao
- Fukui Institute
for Fundamental
Chemistry, Kyoto University, 34-4 Takano
Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
- Key Laboratory of Photochemical
Conversion and Optoelectronic Materials, Technical Institute of Physics
and Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
| | - Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Keiji Morokuma
- Fukui Institute
for Fundamental
Chemistry, Kyoto University, 34-4 Takano
Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
- Cherry L. Emerson Center for
Scientific Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322,
United States
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