Variational graph autoencoder for reconstructed transcriptomic data associated with NLRP3 mediated pyroptosis in periodontitis

The NLRP3 inflammasome, regulated by TLR4, plays a pivotal role in periodontitis by mediating inflammatory cytokine release and bone loss induced by Porphyromonas gingivalis. Periodontal disease creates a hypoxic environment, favoring anaerobic bacteria survival and exacerbating inflammation. The NLRP3 inflammasome triggers pyroptosis, a programmed cell death that amplifies inflammation and tissue damage. This study evaluates the efficacy of Variational Graph Autoencoders (VGAEs) in reconstructing gene data related to NLRP3-mediated pyroptosis in periodontitis. The NCBI GEO dataset GSE262663, containing three samples with and without hypoxia exposure, was analyzed using unsupervised K-means clustering. This method identifies natural groupings within biological data without prior labels. VGAE, a deep learning model, captures complex graph relationships for tasks like link prediction and edge detection. The VGAE model demonstrated exceptional performance with an accuracy of 99.42% and perfect precision. While it identified 5,820 false negatives, indicating a conservative approach, it accurately predicted 4,080 out of 9,900 positive samples. The model's latent space distribution differed significantly from the original data, suggesting a tightly clustered representation of the gene expression patterns. K-means clustering and VGAE show promise in gene expression analysis and graph structure reconstruction for periodontitis research.

Relationship between Intraoperative Bile Culture Outcomes and Subsequent Postoperative Infectious Complications: A Retrospective Cohort Study

The presence of positive bile culture during intraoperative procedures has been associated with elevated morbidity and mortality rates in hepatobiliopancreatic surgeries, contributing to increased healthcare expenditures. However, the precise impact of bactobilia on the development of postoperative complications remains uncertain due to existing disparities in the published literature. In this retrospective cohort study, we assessed 137 patients who underwent major hepatobiliopancreatic surgery to examine the relationship between intraoperative bile culture outcomes and subsequent postoperative infectious complications. Among patients with bactobilia, a significant 35.1% exhibited systemic or local infectious complications, whereas only 11.1% of those with negative culture results experienced any infectious complications (p = 0.002). Similarly, a notable difference was observed in the incidence of surgical site infections, with 24.3% in the bactobilia group compared to 7.9% in the negative culture group (p = 0.01). A total of 74 monomicrobial cultures with microbiological growth were isolated, predominantly featuring Gram-negative microorganisms, primarily Enterobacteriaceae in 49 cultures. Escherichia coli was identified in 37.8% of positive cultures, while Klebsiella pneumoniae was evident in 21.6%. Gram-positive microorganisms were present in 10 cultures, with Enterococcus emerging as the prevailing species. The logistic regression model identified a positive bile culture as an independent factor significantly associated with infection development (OR: 2.26; 95% confidence interval: 1.23-11; p = 0.02). Considering the limitations of the study, these findings underscore the critical importance of conducting bile cultures during the intraoperative phase to enable vigilant monitoring and prompt management of infectious complications.

Effect of preheating and curing lamp distance on the degree of conversion of four nanohybrid resins: An in vitro study

BACKGROUND

Inadequate polymerization of resins is a major cause of failure in dental restorations. This study aimed to evaluate the hypothesis that both polymerization distance and preheating of four nanohybrid resins significantly affect their degree of conversion (DC).

MATERIAL AND METHODS

Four A2-colored nanohybrid resins were selected: Filtek Z250 XT (3M), Tetric N-Ceram (Ivoclar), Zafira (New Stetic), and Spectra Smart (Dentsply). These resins were chosen due to their varied compositions. Forty-eight discs (6 mm diameter, 2 mm thickness) were manufactured, with 24 discs preheated to 39°C. All discs were polymerized for 40 seconds at distances of 1 mm and 6 mm using the Bluephase N lamp (Ivoclar Vivadent), operating at 385-515 nm and 1200 mW/cm². The polymerized discs were stored in distilled water at 37°C for 24 hours, and the DC was measured using Fourier-transform infrared spectroscopy (FTIR). Statistical analysis was performed using one-way ANOVA and independent samples t-tests.

RESULTS

No statistically significant differences in DC were observed between samples preheated to 39°C and those at room temperature (p> 0.05). Zafira exhibited the highest DC, significantly higher than Z250 XT in all groups (p< 0.005) and higher than Tetric N-Ceram on the surface (p< 0.05). Significant differences were also found between Zafira and Spectra Smart in specific conditions (p< 0.05). No significant differences in DC were found between polymerization distances of 1 mm and 6 mm. Uniform polymerization was achieved throughout the resin discs.

CONCLUSIONS

Preheating nanohybrid resins to 39°C had no statistically significant impact on their degree of conversion. Acceptable DC values were achieved using a high-intensity lamp for 40 seconds, even at a curing distance of 6 mm. Among the tested resins, Zafira demonstrated the highest DC under various conditions, significantly outperforming Z250 XT, Tetric N-Ceram, and Spectra Smart in specific comparisons. Key words:Nanohybrid composite, polymerization, degree of conversion.

Exploring the interplay between Porphyromonas gingivalis KGP gingipain, herpes virus MicroRNA-6, and Icp4 transcript in periodontitis: Computational and clinical insights

BACKGROUND

Porphyromonas gingivalis, a major pathogen in periodontitis, produces KGP (Lys-gingipain), a cysteine protease that enhances bacterial virulence by promoting tissue invasion and immune evasion. Recent studies highlight microRNAs' role in viral latency, potentially affecting lytic replication through host mechanisms. Herpes virus (HSV) establishes latency via interactions between microRNA-6 (miRH-6) and the ICP4 transcription factor in neural ganglia. This suggests a potential link between periodontitis and HSV-induced latency. This study aims to identify and validate the insilico inhibitory interaction of P. gingivalis KGP with ICP4 transcripts and correlate the presence of viral latency-associated transcript micro-RNA-6 with periodontitis.

METHODS

Computational docking analysis was performed to investigate the potential interaction between ICP4 and KGP gingipain. The binding energy and RMSD ligand values were calculated to determine the interaction's strength. Ten patients with recurrent clinical attachment loss despite conventional therapy were included in the clinical study. Subgingival tissue samples were collected post-phase I therapy, and HSV microRNA-6 presence was detected via polymerase chain reaction and confirmed through gel electrophoresis.

RESULTS

Computational docking identified the ICP4-KGP gingipain complex with the lowest binding energy (-288.29 kJ mol^1) and an RMSD ligand of 1.5 Angstroms, indicating strong interaction potential. Gel electrophoresis confirmed miRH-6 presence in all samples.

CONCLUSION

The identification of miRNA-6 in periodontitis patients and the strong interaction potential between P. gingivalis KGP gingipain and ICP4 transcripts indicate a possible link between bacterial virulence factors and viral latency dynamics in periodontal tissues. These results highlight the complex interplay between oral pathogens, viral microRNAs, and host immune responses in periodontitis.

Deep Neural Networks Based on Sp7 Protein Sequence Prediction in Peri-Implant Bone Formation

Objective: Peri-implant bone regeneration is crucial for dental implant success, particularly in managing peri-implantitis, which causes inflammation and bone loss. SP7 (Osterix) is vital for osteoblast differentiation and bone matrix formation. Advances in deep neural networks (DNNs) offer new ways to analyze protein sequences, potentially improving our understanding of SP7's role in bone formation. This study aims to develop and utilize DNNs to predict the SP7 protein sequence and understand its role in peri-implant bone formation. Materials: and Methods: Sequences were retrieved from UniProt IDs Q8TDD2 and Q9V3Z2 using the UniProt dataset. The sequences were Sp7 fasta sequences. These sequences were located, and their quality was assessed. We built an architecture that can handle a wide range of input sequences using a DNN technique, with computing needs based on the length of the input sequences. Results: Protein sequences were analyzed using a DNN architecture with ADAM optimizer over 50 epochs, achieving a sensitivity of 0.89 and a specificity of 0.82. The receiver operating characteristic (ROC) curve demonstrated high true-positive rates and low false-positive rates, indicating robust model performance. Precision-recall analysis underscored the model's effectiveness in handling imbalanced data, with significant area under the curve (AUC-PR). Epoch plots highlighted consistent model accuracy throughout training, confirming its reliability for protein sequence analysis. Conclusion: The DNN employed with ADAM optimizer demonstrated robust performance in analyzing protein sequences, achieving an accuracy of 0.85 and high sensitivity and specificity. The ROC curve highlighted the model's effectiveness in distinguishing true positives from false positives, which is essential for reliable protein classification. These findings suggest that the developed model is promising for enhancing predictive capabilities in computational biology and biomedical research, particularly in protein function prediction and therapeutic development applications.

Smile Aesthetics Assessment in Patients Undergoing the Finishing Phase of Orthodontic Treatment: An Observational Cross-Sectional Study

Objective To describe the smile characteristics of patients entering the finishing phase of orthodontic treatment. Methods This observational study involved a non-probabilistic sample of 48 patients. Clinical records served as the basis for determining the type of treatment (with or without extractions). Photographs were analyzed to obtain smile variables. Dental casts and panoramic radiographs were evaluated to ascertain the cast-radiograph evaluation (CRE) index. Univariate and bivariate analyses were conducted at a significance level of 0.05. Results The study evaluated 24 men and 24 women, with an average age of 20.10 ± 6.78 years. Fifty percent of the patients did not undergo extractions, and the average CRE index for the sample was 34.83 ± 9.01. Regarding the smile, a medium smile line was prevalent in 66.7% of cases, and a non-consonant smile arc was observed in 58.3%. Significant differences in the smile arc were found between patients with and without extractions (p=0.019). Right and left buccal corridors measured 2.52 mm ± 1.52 and 2.43 mm ± 1.37, respectively. The upper dental midline deviated by 0.80 ± 0.91 mm and had an angulation of 1.65 ± 2.05º. Both variables showed significant differences between Class I and Class II patients (p=0.020; p=0.027). Symmetrical smiles were also observed (1.05 ± 0.17). Conclusions Based on our findings, clinicians should focus on the smile arc in patients who have not undergone extractions and on the midline inclination in Class II patients. These appear to be the most common areas for improvement in patients who are in the finishing phase of treatment. Additionally, considerable variability exists in the smile characteristics of patients still undergoing orthodontic treatment, leaving room for further enhancement of results.

Comprehensive Umbrella Review of the Management of Esophageal Anastomotic Leaks

Background/Objectives: Esophageal anastomotic leaks (EALs) are among the most feared complications following upper gastrointestinal surgery, particularly esophagectomy, given their profound impact on patient outcomes and healthcare resource utilization. This study aims to synthesize the evidence and determine the most effective interventions for achieving leak closure in patients with esophageal anastomotic leaks. Methods: This umbrella review followed PRISMA guidelines. A comprehensive search was conducted in PubMed, the Web of Science, Scopus, Google Scholar, Cochrane, and PROSPERO. Systematic reviews/meta-analyses on esophageal anastomotic leak management were included. The outcomes analyzed included leak closure success, mortality, complications, hospital stay, and costs. Data were synthesized narratively, with disagreements resolved by a third reviewer. Results: A systematic search identified 730 records, from which six systematic reviews and meta-analyses (evaluating 65 studies and 2186 patients) met the inclusion criteria. Most studies compared endoscopic vacuum therapy (EVT) and self-expanding metal stents (SEMSs) for EALs, with Germany contributing the majority. EVT consistently demonstrated superior leak closure rates and lower mortality compared to SEMSs, with pooled odds ratios favoring EVT. EVT also showed reduced complication rates, particularly fewer major adverse events, although with a slightly higher risk of post-therapy strictures. Hospital stay durations varied, with some studies reporting shorter treatment periods for EVT but no significant differences in the overall hospitalization length. Limited data suggested that EVT incurs higher treatment costs, largely due to intensive care unit stays. Conclusions: EVT is the most effective intervention for EALs, offering superior leak closure, lower mortality, and fewer complications. However, its economic impact requires further evaluation.

Diagnosis and treatment for central Mucoepidermoid Carcinoma in the mandible: Report of a clinical case in a young patient

A clinical case of a 13 year old male patient with a malignant tumor in the mandibular body area with two years of evolution and associated pain is reported. It was initially diagnosed as low grade central mucoepidermoid carcinoma through Hematoxylin and Eosin (H-E) staining in multiple biopsies. Considering the clinical and radiographic characteristics of the lesion, it was necessary to confirm the diagnosis through Periodic acid-Schiff (PAS). The treatment involved hemimandibulectomy, neck emptying, and complementary radiotherapy. This article aims to present a rare occurrence of this type of intraosseous malignant tumor of glandular origin in a young patient. Key words:Mucoepidermoid carcinoma, periodic acid Schiff reaction, pathology, surgery, radiotherapy.

Assessment of the association between coronary artery blockage and periodontal health status in patients undergoing coronary angiography: a cross-sectional study

BACKGROUND

Growing evidence suggests a potential link between periodontal disease and the development of atherosclerosis, positioning periodontal disease as a possible risk factor for cardiovascular diseases (CVD). This study aimed to evaluate periodontal status in patients with coronary artery disease (CAD) by measuring the Periodontal Inflamed Surface Area (PISA) score in individuals undergoing coronary angiography.

MATERIAL AND METHODS

In this cross-sectional study, 300 patients scheduled for coronary angiography at K.S. Hegde Medical Hospital, Mangalore, India, were recruited. Comprehensive medical and dental histories were obtained prior to the procedure. The PISA score was calculated using standardized periodontal measurements. Patients were categorized into three groups based on angiographic findings: no coronary artery blockage, blockage in one or more vessels with <50% stenosis, and blockage in one or more vessels with ≥50% stenosis. Additional subgroup analyses were conducted for single-, double-, and triple-vessel disease. A p-value of <0.05 was considered statistically significant.

RESULTS

A significant increase in PISA scores was observed in patients with ≥50% coronary artery stenosis compared to those with <50% stenosis and no stenosis. However, the extent of vessel obstruction appeared independent of the degree of periodontal destruction.

CONCLUSIONS

This study suggests that periodontal disease may act as a pro-atherogenic factor in the context of CAD, potentially contributing to the progression of atherosclerosis rather than being a direct causative agent. These findings underscore the importance of considering oral health in cardiovascular risk assessment and management for patients with coronary artery disease.