Proline cis-trans isomerization and its implications for the dimerization of analogues of cyclopeptide stylostatin 1: a combined computational and experimental study

Cis and trans proline conformers are often associated with dramatic changes in the biological function of peptides. A slow equilibrium between cis and trans Ile-Pro amide bond conformers occurs in constrained derivatives of the native marine cyclic heptapeptide stylostatin 1 (cyclo-(NSLAIPF)), a potential anticancer agent. In this work, four cyclopeptides, cyclo-(NSTAIPF), cyclo-(KSTAIPF), cyclo-(RSTAIPF) and cyclo-(DSTAIPF), which are structurally related to stylostatin 1, are experimentally and computationally examined in order to assess the effect of residue mutations on the cis-trans conformational ratio and the apparent capacity to form dimeric aggregates. Primarily, cyclo-(KSTAIPF) and cyclo-(RSTAIPF) showed specific trends in circular dichroism, MALDI-TOF and HPLC purification experiments, which suggests the occurrence of peptide dimerization. Meanwhile, the NMR spectrum of cyclo-(KSTAIPF) indicates that this cyclopeptide exists in the two slow-exchange families of conformations mentioned above. Molecular dynamics simulations combined with quantum mechanical calculations have shed light on the factors governing the cis/trans conformational ratio. In particular, we have found that residue mutations affect the internal hydrogen bond pattern which ultimately tunes the cis/trans conformational ratio and that only trans conformers are capable of aggregating due to the shape complementarity of the two subunits.

Insights into the preclinical treatment of blood-stage malaria by the antibiotic borrelidin

BACKGROUND AND PURPOSE

Blood-stage Plasmodium parasites cause morbidity and mortality from malaria. Parasite resistance to drugs makes development of new chemotherapies an urgency. Aminoacyl-tRNA synthetases have been validated as antimalarial drug targets. We explored long-term effects of borrelidin and mupirocin in lethal P. yoelii murine malaria.

EXPERIMENTAL APPROACH

Long-term (up to 340 days) immunological responses to borrelidin or mupirocin were measured after an initial 4 day suppressive test. Prophylaxis and cure were evaluated and the inhibitory effect on the parasites analysed.

KEY RESULTS

Borrelidin protected against lethal malaria at 0.25 mg·kg⁻¹·day⁻¹. Antimalarial activity of borrelidin correlated with accumulation of trophozoites in peripheral blood. All infected mice treated with borrelidin survived and subsequently developed immunity protecting them from re-infection on further challenges, 75 and 340 days after the initial infection. This long-term immunity in borrelidin-treated mice resulted in negligible parasitaemia after re-infections and marked increases in total serum levels of antiparasite IgGs with augmented avidity. Long-term memory IgGs mainly reacted against high and low molecular weight parasite antigens. Immunofluorescence microscopy showed that circulating IgGs bound predominantly to late intracellular stage parasites, mainly schizonts.

CONCLUSIONS AND IMPLICATIONS

Low borrelidin doses protected mice from lethal malaria infections and induced protective immune responses after treatment. Development of combination therapies with borrelidin and selective modifications of the borrelidin molecule to specifically inhibit plasmodial threonyl tRNA synthetase should improve therapeutic strategies for malaria.

Inkjet Printing of Conductive and Resistive Coatings

Coating of functional materials is the basis of many electronic device manufacturing processes. Screen printing, roll coating and other methods have been used for decades, permitting low cost, high production rates of Printed Circuit Boards (PCBs), where conductive pathways are printed before components are integrated. Nowadays, the PCB industry in developed countries is suffering a revision of all manufacturing processes, to cope with severe market constraints: short runs and fast time-to-market. Inkjet technology has arrived to complement the traditional, analogical production, with new tools that makes possible to produce goods with great versatility.

In this work we will state the problem of inkjet printing functional materials in the frame of PCB manufacturing. The use of numerical methods to asset the formation of conductive pathlines using digital techniques will be presented. Also, the use of resistive and dielectric inks will be discussed.

Actively mode-locked fiber ring laser by intermodal acousto-optic modulation

We report an actively mode-locked fiber ring laser. A simple and low-insertion-loss acousto-optic modulator driven by standing flexural waves, which couples core-to-cladding modes in a standard single-mode optical fiber, is used as an active mechanism for mode locking. Among the remarkable features of the modulator, we mention its high modulation depth (72%), broad bandwidth (187 GHz), easy tunability in the optical wavelength, and low insertion losses (0.7 dB). The narrowest optical pulses obtained were of 95 ps time width, 21 mW peak power, repetition rate of 4.758 MHz, and 110 mW of pump power.

Neoadjuvant biweekly dose-dense chemotherapy with fluouracil, epirubicin, and cyclophosphamide (FEC 90), followed by docetaxel in patients with HER2-neu negative primary breast cancer

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Background: A primary goal of therapy for large early stage breast cancers is to achieve breast conserving surgery (BCS) through tumor mass reduction with neoadjuvant chemotherapy. In addition, induction of pathological complete response (pCR) is reported to prolong disease-free survival. Encouraged by results from recent studies of dose-dense chemotherapy in the adjuvant setting, we studied preoperative treatment with biweekly 5-fluorouracil, epirubicin, and cyclophosphamide followed sequentially by triweekly docetaxel. Methods: Eighty-one women with stage IIA to IIIB breast cancer were entered into this trial between August 2003 and April 2008. Patients received 5-fluorouracil 600mg/m2, epirubicin 90 mg/m2, and cyclophosphamide 600 mg/m2 (q2w x 4 cycles) followed by docetaxel 100 mg/m2 (q3w x 4 cycles). Granulocyte colony-stimulating factor was administered each cycle to reduce the risk of neutropenic complication. After chemotherapy, patients underwent surgery, and received standard adjuvant radiotherapy and hormone therapy as usual clinical practice. The primary endpoint of this trial was pathological response rate and the secondary endpoints were BCS rate and toxicity. Results: A total of 79 patients were analyzed. The median age was 50y (28–74), the median tumour size was 4 cm. 50 patients (63.2%) were ER positive and/ o PR positive. 48 patients (60.7%) were pre-menopausal. Median follow-up was 36m, 64 patients had stage II (81%) and 15 had stage III (19%). Clinical response was seen in all cases. A pCR with no evidence of tumor in the breast and lymph nodes was confirmed in 21 patients (26.5%). BSC was performed in 61 patients (77.2%). Treatment was well tolerated, 8 patients (10.1%) had grade 3/4 hematological toxicity. Others adverse events including, anorexia, fatigue, nausea, vomiting, mucositis, myalgia, nail changes, peripheral neuropathy, hand-foot skin reactions were mild and manegeable. Conclusions: The neoadjuvant biweekly dose-dense chemotherapy with fluouracil, epirubicin and cyclophosphamide (FEC 90), followed by docetaxel is safe and demostrates a high pathological response rate (pCR) of 26.5% with an increase rate of BCS of 77.2%.

No significant financial relationships to disclose.

Mode locking of an all-fiber laser by acousto-optic superlattice modulation

Active mode locking of an erbium-doped all-fiber laser with a Bragg-grating-based acousto-optic modulator is demonstrated. The fiber Bragg grating was acoustically modulated by a standing longitudinal elastic wave, which periodically modulates the sidebands at twice the acoustic frequency. The laser has a Fabry-Perot configuration in which cavity loss modulation is achieved by tuning the output fiber Bragg grating to one of the acoustically induced sidebands. Optical pulses at 9 MHz repetition rate, 120 mW peak power, and 780 ps temporal width were obtained. The output results to be stable and has a timing jitter below 40 ps. The measured linewidth, 2.8 pm, demonstrates that these pulses are transform limited.

Modulation of coaxial modal interferometers based on long period gratings in double cladding fibers

This paper reports on the dynamic modulation of coaxial interferometers based on two cascaded long period gratings written in double cladding fibers. The interferometer is modulated by a piezoelectric ceramic which stretches one the gratings at tens of kHz, the output light is intensity modulated with an efficiency of 97 %. The device operates at 1530nm, has more than 50nm bandwidth, insertion loss of 0.4 dB and a temperature drift of 0.11 nm/ degrees C.

In vitro and in vivo expression of human erythrocyte pyruvate kinase in erythroid cells: a gene therapy approach

Human pyruvate kinase deficiency (PKD), an autosomal recessive disorder produced by mutations in the PKLR gene, is the most common cause of chronic nonspherocytic hemolytic anemia. Transduction of wild-type erythroid (R-type) pyruvate kinase (RPK) cDNA into deficient hematopoietic stem cells could be of potential use as rescue therapy in severe clinical cases. In this study, gammaretroviral vectors expressing human RPK were designed as possible gene therapy candidates for this disease. Through real-time quantitative reverse transcriptase-polymerase chain reaction, Western blotting, and flow cytometric analysis, we demonstrate stable RPK expression in both undifferentiated and differentiated murine erythroleukemia cells. In this in vitro assay, the proportion of transduced cells and the intensity of expression of the transgene remained unaltered after 6 months of culture. Moreover, transplanting human RPK-transduced Lin(-)Sca-1(+) mouse cells in myeloablated primary and secondary recipients rendered high proportions of erythroid precursors and mature erythrocytes expressing RPK, without inducing hematopoietic effects. These findings suggest that retroviral vectors could be useful for the delivery and expression of RPK in erythroid cells, and provide evidence of the potential use of gene therapy strategies to phenotypically correct erythroid PKD.

Functional analysis of gammaretroviral vector transduction by quantitative PCR

BACKGROUND

In a clinical setting of gene therapy, quantitative methods are required to determine recombinant viral titres and transgene mRNA expression, avoiding the use of reporter genes.

METHODS

We describe procedures based on quantitative polymerase chain reaction (qPCR) designed to assess functional titres of murine leukaemia virus (MLV) vectors, determine proviral copy numbers in transduced cells, and estimate retroviral transgene expression in both target cell lines and mice with transduced chimeric haematopoiesis.

RESULTS

Compared to EGFP titration, proviral DNA detection by qPCR was more accurate in assessing the number of infective particles in supernatants, such that average viral titres in terms of proviral copies per cell were two-fold higher. Transgene mRNA expression was directly determined from the vectors used without the need for reporter assays. A new parameter, defined here as the 'transcription index' (TI), served to establish the association between transcribed transgenic mRNA and each proviral insertion. The TI represents the potential expression of every vector or insertion in each cell type, and is thus useful as a control parameter for monitoring preclinical or clinical protocols.

CONCLUSIONS

The practical use of qPCR is demonstrated as a valuable alternative to reporter genes for the assessment and surveillance of insertion numbers and transgene expression. In combination with protein expression, this approach should be capable of establishing safer therapeutic gene doses, avoiding the potential side effects of high transduction and expression levels.

Q-switching of an all-fiber laser by acousto-optic modulation of a fiber Bragg grating

We report active Q-switching of an all-fiber laser using a Bragg grating based acousto-optic modulator. Q-switching is performed by modulating a fiber Bragg grating with an extensional acoustic wave. The acoustic wave modulates periodically the effective index profile of the FBG and changes its reflection features. This allows controlling the Q-factor of the cavity. Using 1 m of 300 ppm erbium-doped fiber and a maximum pump power of 180 mW, Q-switch pulses of 10 W of peak power and 82 ns wide were generated. The pulse repetition rate of the laser can be continuously varied from few Hz up to 62.5 kHz.

Dietary protein source affects lipid metabolism in the European seabass (Dicentrarchus labrax)

The study was undertaken to evaluate the effects of dietary protein sources on lipogenesis and fat deposition in a marine teleost, the European seabass (Dicentrarchus labrax). Four isonitrogenous (crude protein (CP, Nx6.25), 44% DM) and isoenergetic (22-23 kJ/g DM) diets were formulated to contain one of the following as the major protein source: fish meal (FM), one of two soy protein concentrates (SPC) and corn gluten meal (CGM). Apparent digestibility coefficients of the diets and raw ingredients, as well as soluble nitrogen (ammonia and urea) and phosphorus excretion were measured. Growth rates of seabass fed plant protein-based diets were significantly lower than those fed fish meal based diet. The protein utilisation was strongly correlated to the dietary essential amino acids index. Measurements of N excretion (ammonia and urea nitrogen) confirmed these data. Daily fat gain at the whole body level ranged between 1.1 to 1.7 g/kg BW, with the highest values being recorded in fish fed the fish meal based diet. Levels of plasma triglycerides and cholesterol were lower in fish fed soy protein diets than in those fed the diet solely based on fish meal. Soy protein rich diets decreased the activities of selected hepatic lipogenic enzymes (glucose 6-phosphate dehydrogenase, malic enzyme, ATP-citrate lysase, acetylcoenzyme A carboxylase and fatty acid synthetase). Highest lipogenic enzyme activities where found in fish fed the fish meal diet, except for fatty acid synthetase which was increased in seabass fed the corn-gluten meal based diets. Overall data suggest that dietary protein sources affects fat deposition and the lipogenic potential in European seabass.

Time-domain fiber laser hydrogen sensor

We report a novel scheme for a fiber-optic hydrogen sensor based on an erbium-doped fiber laser with a palladium-coated tapered fiber within the laser cavity. The tapered fiber acts as a hydrogen-sensing element. When the sensing element is exposed to a hydrogen atmosphere, its attenuation decreases, changing the cavity losses and leading to a modification of the laser transient. The hydrogen concentration is obtained by simple measurement of the buildup time of the laser. This technique translates the measurement of hydrogen concentration into the time domain, and it can be extended to many intensity-based fiber sensors. Relative variations in the buildup time of up to 55% at an increase of the hydrogen concentration from 0 to 10% are achieved with a resolution of better than 0.1%.

Sonic band gaps in PCF preforms: enhancing the interaction of sound and light

We study the localisation and control of high frequency sound in a dual-core square-lattice photonic crystal fibre preform. The coupled states of two neighboring acoustic resonances are probed using an interferometric set up, and experimental evidence is obtained for odd and even symmetry trapped states. Full numerical solutions of the acoustic wave equation show the existence of a two-dimensional sonic band gap, and numerical modelling of the strain field at the defects gives results that agree well with the experimental observations. The results suggest that sonic band gaps can be used to manipulate sound with great precision and enhance its interaction with light.