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Vulpetti A, Rondeau JM, Bellance MH, Blank J, Boesch R, Boettcher A, Bornancin F, Buhr S, Connor LE, Dumelin CE, Esser O, Hediger M, Hintermann S, Hommel U, Koch E, Lapointe G, Leder L, Lehmann S, Lehr P, Meier P, Muller L, Ostermeier D, Ramage P, Schiebel-Haddad S, Smith AB, Stojanovic A, Velcicky J, Yamamoto R, Hurth K. Ligandability Assessment of IL-1β by Integrated Hit Identification Approaches. J Med Chem 2024; 67:8141-8160. [PMID: 38728572 DOI: 10.1021/acs.jmedchem.4c00240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2024]
Abstract
Human interleukin-1β (IL-1β) is a pro-inflammatory cytokine that plays a critical role in the regulation of the immune response and the development of various inflammatory diseases. In this publication, we disclose our efforts toward the discovery of IL-1β binders that interfere with IL-1β signaling. To this end, several technologies were used in parallel, including fragment-based screening (FBS), DNA-encoded library (DEL) technology, peptide discovery platform (PDP), and virtual screening. The utilization of distinct technologies resulted in the identification of new chemical entities exploiting three different sites on IL-1β, all of them also inhibiting the interaction with the IL-1R1 receptor. Moreover, we identified lysine 103 of IL-1β as a target residue suitable for the development of covalent, low-molecular-weight IL-1β antagonists.
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Hommel U, Hurth K, Rondeau JM, Vulpetti A, Ostermeier D, Boettcher A, Brady JP, Hediger M, Lehmann S, Koch E, Blechschmidt A, Yamamoto R, Tundo Dottorello V, Haenni-Holzinger S, Kaiser C, Lehr P, Lingel A, Mureddu L, Schleberger C, Blank J, Ramage P, Freuler F, Eder J, Bornancin F. Discovery of a selective and biologically active low-molecular weight antagonist of human interleukin-1β. Nat Commun 2023; 14:5497. [PMID: 37679328 PMCID: PMC10484922 DOI: 10.1038/s41467-023-41190-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 08/25/2023] [Indexed: 09/09/2023] Open
Abstract
Human interleukin-1β (hIL-1β) is a pro-inflammatory cytokine involved in many diseases. While hIL-1β directed antibodies have shown clinical benefit, an orally available low-molecular weight antagonist is still elusive, limiting the applications of hIL-1β-directed therapies. Here we describe the discovery of a low-molecular weight hIL-1β antagonist that blocks the interaction with the IL-1R1 receptor. Starting from a low affinity fragment-based screening hit 1, structure-based optimization resulted in a compound (S)-2 that binds and antagonizes hIL-1β with single-digit micromolar activity in biophysical, biochemical, and cellular assays. X-ray analysis reveals an allosteric mode of action that involves a hitherto unknown binding site in hIL-1β encompassing two loops involved in hIL-1R1/hIL-1β interactions. We show that residues of this binding site are part of a conformationally excited state of the mature cytokine. The compound antagonizes hIL-1β function in cells, including primary human fibroblasts, demonstrating the relevance of this discovery for future development of hIL-1β directed therapeutics.
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Dentel A, Koch E. Keratitis due to global warming. J Fr Ophtalmol 2023; 46:201. [PMID: 36653254 DOI: 10.1016/j.jfo.2022.09.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 09/08/2022] [Indexed: 01/17/2023]
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Dentel A, Koch E. Thrombectomy: An unexpected retinochoroidal journey. J Fr Ophtalmol 2022; 45:836-838. [DOI: 10.1016/j.jfo.2021.09.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 09/06/2021] [Accepted: 09/22/2021] [Indexed: 10/18/2022]
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Dentel A, Speybrouck A, Koch E. [Between Roth spots and cotton-wool spots]. J Fr Ophtalmol 2022; 45:559-563. [PMID: 35331560 DOI: 10.1016/j.jfo.2021.11.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 10/06/2021] [Accepted: 11/18/2021] [Indexed: 10/18/2022]
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Ma EJ, Siirola E, Moore C, Kummer A, Stoeckli M, Faller M, Bouquet C, Eggimann F, Ligibel M, Huynh D, Cutler G, Siegrist L, Lewis RA, Acker AC, Freund E, Koch E, Vogel M, Schlingensiepen H, Oakeley EJ, Snajdrova R. Machine-Directed Evolution of an Imine Reductase for Activity and Stereoselectivity. ACS Catal 2021. [DOI: 10.1021/acscatal.1c02786] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Linkies A, Jacob S, Zink P, Maschemer M, Maier W, Koch E. Characterization of cultural traits and fungicidal activity of strains belonging to the fungal genus Chaetomium. J Appl Microbiol 2020; 131:375-391. [PMID: 33249672 DOI: 10.1111/jam.14946] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 10/14/2020] [Accepted: 11/22/2020] [Indexed: 11/27/2022]
Abstract
AIMS Compare and characterize Chaetomium strains with special regard to their potentialities as biocontrol agents. METHODS AND RESULTS Twelve strains of the fungal genus Chaetomium from diverse ecological niches were identified as belonging to six different species. Large differences were observed between the strains with regard to temperature requirements for mycelial growth and pigmentation of culture filtrates. Culture filtrates and ethyl acetate extracts were assayed for fungicidal effects against important phytopathogens both on agar media and in multiwell plates. The samples from Chaetomium globosum were particularly active against Botrytis cinerea, Pyrenophora graminea and Bipolaris sorokiniana, while those from C. cochliodes and C. aureum were inhibitory towards Phytophthora infestans, and P. infestans and Fusarium culmorum respectively. To narrow down the active principle, the most promising extracts were separated by preparative HPLC and the resulting fractions tested in bioassays. Chaetoglobosins were identified as active compounds produced by C. globosum. CONCLUSIONS The bioassays revealed C. aureum and C. cochliodes as promising candidates for use in biocontrol. Both showed remarkably good activity against the prominent plant pathogen P. infestans. SIGNIFICANCE AND IMPACT OF THE STUDY We provide the first systematic study comparing six different Chaetomium species with regard to their use as biocontrol agents.
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Zhang Z, Engel MA, Koch E, Reeh PW, Khalil M. Menthacarin induces calcium ion influx in sensory neurons, macrophages and colonic organoids of mice. Life Sci 2020; 264:118682. [PMID: 33127519 DOI: 10.1016/j.lfs.2020.118682] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Revised: 10/19/2020] [Accepted: 10/24/2020] [Indexed: 02/08/2023]
Abstract
AIMS Menthacarin is a herbal combination that is clinically used for the treatment of functional gastrointestinal disorders (FGIDs). In several clinical studies, Menthacarin reduced visceral hypersensitivity-related symptoms. Pathogenesis of visceral hypersensitivity is multifactorial. This involves several cell types and different transient receptor potential ion channels (TRPs); these ion channels are highly conductive for calcium ions. Since transient changes in cytosolic calcium levels are crucial for many functions of living cells, we investigated if Menthacarin can induce calcium influx in sensory, largely nociceptive, neurons from dorsal root ganglia (DRG), peritoneal macrophages (PMs) and colonic organoids. MAIN METHODS We employed the calcium imaging technique on sensory neurons from DRG, PMs and colonic organoids isolated from mice. All cells were superfused by Menthacarin at several concentrations (600, 1200, 1800 μg/ml) during the experiments, followed by calcium ionophor ionomycin (Iono., 1 μM) as a positive control. KEY FINDINGS Menthacarin induced concentration-dependent calcium ion influx in all investigated cell types. Furthermore, repeated applications of Menthacarin induced tachyphylaxis (desensitisation) of calcium responses in sensory neurons and colonic organoids. SIGNIFICANCE Menthacarin-induced calcium influx into sensory neurons, macrophages and colonic organoids is probably related to its clinical desensitising effects in patients with FGIDs.
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Lovett S, Reed T, Riggs R, Lew G, Koch E, Rech M. 256 Intravenous Sub-Dissociative Dose Ketamine for Analgesia in the Emergency Department: A Dosing Comparison. Ann Emerg Med 2019. [DOI: 10.1016/j.annemergmed.2019.08.214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Hearnden P, Koch E, Hefford C. Would the real allele please stand up? Compiling DNA artefacts for the GlobalFiler PCR amplification kit – a South Australian approach. AUST J FORENSIC SCI 2019. [DOI: 10.1080/00450618.2019.1571629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Grondin C, Pascal M, Bourdon H, Vu Q, Beaujeux P, Koch E. Hématome sous-rétinien compliqué de décollement de rétine lors d’un surdosage en anticoagulant au cours d’une dégénérescence maculaire liée à l’âge. J Fr Ophtalmol 2019; 42:215-218. [DOI: 10.1016/j.jfo.2018.04.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Revised: 02/09/2018] [Accepted: 04/04/2018] [Indexed: 10/27/2022]
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Chatterjee SS, Koch E. Experimentelle Grundlagen für die therapeutische Anwemcltimg von Ginkgoextrakt EGb 761. Hamostaseologie 2018. [DOI: 10.1055/s-0038-1655207] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
Abstract
ZusammenfassungMonoextrakte aus den Blättern des Ginkgobaumes (Ginkgo biloba L.) werden zur Behandlung von peripheren und zentralen Durchblutungsstörungen sowie bei nachlassender intellektueller Leistungsfähigkeit eingesetzt. Der Spezialextrakt EGb 761 wird in einem standardisierten, vielstufigen Produktionsverfahren gewonnen. Ziel des Herstellungsprozesses ist neben der Anreicherung aktiver Inhaltsstoffe die weitgehende Entfernung von Substanzen mit unerwünschten Eigenschaften. Die experimentellen Befunde zeigen, daß dieser Extrakt pharmakologische Effekte auf alle wesentlichen, an der Blutversorgung beteiligten Komponenten ausübt. Auf der Gefäßebene bewirkt EGb 761 eine Steigerung der lokalen Durchblutung, beeinflußt den Arterienund Venentonus, vermindert eine erhöhte Kapillarpermeabilität und stimuliert die endotheliale Prostazyklinsynthese. Die Wirkungen auf das Blut umfassen unter anderem eine Verbesserung der rheologischen Eigenschaften, eine Stabilisierung der Erythrozytenmembran und die Hemmung PAF-vermittelter Reaktionen. Im Gewebe erhöht EGb 761 die Hypoxietoleranz, besitzt antiischämische Eigenschaften, verbessert den Energiemetabolismus und schützt vor Radikalinduzierten Schädigungen durch Hemmung und Neutralisierung von freien Radikalen.
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Braicu E, Torsten U, Richter R, Beteta C, Boneß-Zaloume J, Dimitrova D, Koch E, Chen F, Chekerov R, Hasenbein K, Sehouli J. HE4 is the marker of choice in discriminating endometriosis from ovarian cancer in pelvic mass patients: Sub-analysis of a prospective multicentric study. Gynecol Oncol 2018. [DOI: 10.1016/j.ygyno.2018.04.547] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Botschuijver S, Welting O, Levin E, Maria-Ferreira D, Koch E, Montijn RC, Seppen J, Hakvoort TBM, Schuren FHJ, de Jonge WJ, van den Wijngaard RM. Reversal of visceral hypersensitivity in rat by Menthacarin ® , a proprietary combination of essential oils from peppermint and caraway, coincides with mycobiome modulation. Neurogastroenterol Motil 2018; 30:e13299. [PMID: 29383802 DOI: 10.1111/nmo.13299] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/12/2017] [Accepted: 01/04/2018] [Indexed: 12/15/2022]
Abstract
BACKGROUND Irritable bowel syndrome (IBS) is a common gastrointestinal disorder associated with altered gastrointestinal microflora and increased nociception to colonic distension. This visceral hypersensitivity can be reversed in our rat maternal separation model by fungicides. Menthacarin® is a proprietary combination of essential oils from Mentha x piperita L. and Carum carvi. Because these oils exhibit antifungal and antibacterial properties, we investigated whether Menthacarin® can reverse existing visceral hypersensitivity in maternally separated rats. METHODS In non-handled and maternally separated rats, we used the visceromotor responses to colorectal distension as measure for visceral sensitivity. We evaluated this response before and 24 hours after water-avoidance stress and after 7 days treatment with Menthacarin® or control. The pre- and post-treatment mycobiome and microbiome were characterized by sequencing of fungal internal transcribed spacer 1 (ITS-1) and bacterial 16s rDNA regions. In vitro antifungal and antimicrobial properties of Menthacarin® were studied with radial diffusion assay. KEY RESULTS Menthacarin® inhibited in vitro growth of yeast and bacteria. Water-avoidance caused visceral hypersensitivity in maternally separated rats, and this was reversed by treatment. Multivariate analyses of ITS-1 and 16S high throughput data showed that maternal separation, induced changes in the myco- and microbiome. Menthacarin® treatment of non-handled and maternally separated rats shifted the mycobiomes to more similar compositions. CONCLUSIONS & INFERENCES The development of visceral hypersensitivity in maternally separated rats and the Menthacarin® -mediated reversal of hypersensitivity is associated with changes in the mycobiome. Therefore, Menthacarin® may be a safe and effective treatment option that should be tested for IBS.
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Strauss P, Koch E, Marti HP, Beisland C, Scherer A, Leh S, Flatberg A, Beisvag V, Landolt L, Skogstrand T, Eikrem O. SP048EXPANDING THE UTILIZATION OF FORMALIN-FIXED, PARAFFIN-EMBEDDED ARCHIVES: FEASIBILITY OF MIRNA-SEQUENCING FOR DISEASE EXPLORATION AND BIOMARKER DEVELOPMENT FROM BIOPSIES WITH CLEAR CELL RENAL CELL CARCINOMA. Nephrol Dial Transplant 2018. [DOI: 10.1093/ndt/gfy104.sp048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Agbih S, Koch E, Kasper A, Mohwinkel L, Nowak A. L2-3Is the right to health (care) an equal right? Focus: refugees and undocumented migrants. Eur J Public Health 2018. [DOI: 10.1093/eurpub/cky049.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Langbein H, Cimalla P, Schnabel C, Hofmann A, Koch E, Morawietz H, Brunssen C. P348Optical coherence tomography as a novel method to measure endothelial dysfunction in mice in vivo. Cardiovasc Res 2018. [DOI: 10.1093/cvr/cvy060.261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Koch E, Vega; A. Castro-Vazquez. I. Evidence for maternal transmission of a putative endosymbiont in the digestive gland of Pomacea canaliculata (Architaenioglossa, Ampullariidae). BIOCELL 2018. [DOI: 10.32604/biocell.2017.00059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Pigat N, Koch E, Goffin V. Effects of WS® 1541 in a transgenic mouse model of benign prostatic hyperplasia (BPH). Am J Transl Res 2017. [DOI: 10.1055/s-0037-1608046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Erdelmeier C, Koch E, Palea S. Development of a Capsicum Extract for large scale production and its pharmacological characterisation. Am J Transl Res 2017. [DOI: 10.1055/s-0037-1608408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Pferschy-Wenzig EM, Roßmann A, Koskinen K, Ardjomand-Woelkart K, Meng G, Koch E, Moissl-Eichinger C, Bauer R. Interactions between hawthorn extract WS® 1442 and human intestinal microbiota in vitro. Am J Transl Res 2017. [DOI: 10.1055/s-0037-1608400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Schötz K, Bacher S, Kulic Z, Koch E. The amazing in vivo multistep rearrangement of bilobalide to furopyranons and cyclopentadifurans. Am J Transl Res 2017. [DOI: 10.1055/s-0037-1608193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Vogel S, Schötz K, Schneider H, Koch E. Detection of metabolites in rat heart tissue after oral treatment with the Crataegus special extract WS® 1442. Am J Transl Res 2017. [DOI: 10.1055/s-0037-1608194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Huhn D, Lauter J, Roesch Ely D, Koch E, Möltner A, Herzog W, Resch F, Herpertz SC, Nikendei C. Performance of International Medical Students In psychosocial medicine. BMC MEDICAL EDUCATION 2017; 17:111. [PMID: 28693486 PMCID: PMC5504851 DOI: 10.1186/s12909-017-0950-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Accepted: 06/26/2017] [Indexed: 05/23/2023]
Abstract
BACKGROUND Particularly at the beginning of their studies, international medical students face a number of language-related, social and intercultural challenges. Thus, they perform poorer than their local counterparts in written and oral examinations as well as in Objective Structured Clinical Examinations (OSCEs) in the fields of internal medicine and surgery. It is still unknown how international students perform in an OSCE in the field of psychosocial medicine compared to their local fellow students. METHODS All students (N = 1033) taking the OSCE in the field of psychosocial medicine and an accompanying written examination in their eighth or ninth semester between 2012 and 2015 were included in the analysis. The OSCE consisted of four different stations, in which students had to perform and manage a patient encounter with simulated patients suffering from 1) post-traumatic stress disorder, 2) schizophrenia, 3) borderline personality disorder and 4) either suicidal tendency or dementia. Students were evaluated by trained lecturers using global checklists assessing specific professional domains, namely building a relationship with the patient, conversational skills, anamnesis, as well as psychopathological findings and decision-making. RESULTS International medical students scored significantly poorer than their local peers (p < .001; η2 = .042). Within the specific professional domains assessed, they showed poorer scores, with differences in conversational skills showing the highest effect (p < .001; η2 = .053). No differences emerged within the multiple-choice examination (p = .127). CONCLUSION International students showed poorer results in clinical-practical exams in the field of psychosocial medicine, with conversational skills yielding the poorest scores. However, regarding factual and practical knowledge examined via a multiple-choice test, no differences emerged between international and local students. These findings have decisive implications for relationship building in the doctor-patient relationship.
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Jannasch A, Schnabel C, Wendenburg A, Dittfeld C, Ploetze K, Koch E, Alexiou K, Matschke K, Tugtekin S. Antifibrotic Medication Trail to Prevent Aortic Valve Fibrosis in an Murine Model. Thorac Cardiovasc Surg 2017. [DOI: 10.1055/s-0037-1598739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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