A Photoactivatable BODIPY Probe for Localization-Based Super-Resolution Cellular Imaging

The synthesis and application of a photoactivatable boron-alkylated BODIPY probe for localization-based super-resolution microscopy is reported. Photoactivation and excitation of the probe is achieved by a previously unknown boron-photodealkylation reaction with a single low-power visible laser and without requiring the addition of reducing agents or oxygen scavengers in the imaging buffer. These features lead to a versatile probe for localization-based microscopy of biological systems. The probe can be easily linked to nucleophile-containing molecules to target specific cellular organelles. By attaching paclitaxel to the photoactivatable BODIPY, in vitro and in vivo super-resolution imaging of microtubules is demonstrated. This is the first example of single-molecule localization-based super-resolution microscopy using a visible-light-activated BODIPY compound as a fluorescent probe.

Family of BODIPY Photocages Cleaved by Single Photons of Visible/Near-Infrared Light

Photocages are light-sensitive chemical protecting groups that provide external control over when, where, and how much of a biological substrate is activated in cells using targeted light irradiation. Regrettably, most popular photocages (e.g., o-nitrobenzyl groups) absorb cell-damaging ultraviolet wavelengths. A challenge with achieving longer wavelength bond-breaking photochemistry is that long-wavelength-absorbing chromophores have shorter excited-state lifetimes and diminished excited-state energies. However, here we report the synthesis of a family of BODIPY-derived photocages with tunable absorptions across the visible/near-infrared that release chemical cargo under irradiation. Derivatives with appended styryl groups feature absorptions above 700 nm, yielding photocages cleaved with the highest known wavelengths of light via a direct single-photon-release mechanism. Photorelease with red light is demonstrated in living HeLa cells, Drosophila S2 cells, and bovine GM07373 cells upon ∼5 min irradiation. No cytotoxicity is observed at 20 μM photocage concentration using the trypan blue exclusion assay. Improved B-alkylated derivatives feature improved quantum efficiencies of photorelease ∼20-fold larger, on par with the popular o-nitrobenzyl photocages (εΦ = 50-100 M^-1 cm^-1), but absorbing red/near-IR light in the biological window instead of UV light.

Aryl Nitrenium and Oxenium Ions with Unusual High-Spin π,π* Ground States: Exploiting (Anti)Aromaticity

Nitrenium and oxenium ions are important reactive intermediates in synthetic and biological processes, and their ground electronic configurations are of great interest due to having distinct reactivities and properties. In general, the closed-shell singlet state of these intermediates usually react as electrophiles, while reactions of the triplet states of these ions react like typical diradicals (e.g., H atom abstractions). Nonsubstituted phenyl nitrenium ions (Ph-NH⁺) and phenyl oxenium ions (Ph-O⁺) have closed-shell singlet ground states with large singlet-triplet gaps resulting from a strong break in the degeneracy of the p orbitals on the formal nitrenium/oxenium center. Remarkably, we find computationally (CBS-QB3 and G4MP2) that azulenyl nitrenium and oxenium ions can have triplet ground states depending upon the attachment position on the azulene core. For instance, CBS-QB3 predicts that 1-azulenyl nitrenium ion and 1-azulenyl oxenium ion are singlet ground-state species with considerable singlet-triplet gaps of -47 and -45 kcal/mol to the lowest-energy triplet state, respectively. In contrast, 6-azulenyl nitrenium ion and 6-azulenyl oxenium ion have triplet ground states with a singlet-triplet gap of +7 and +10 kcal/mol, respectively. Moreover, the triplet states are π,π* states, rather than the typical n,π* states seen for many aryl nitrenium or oxenium ions. This dramatic switch in favored electronic states can be ascribed to changes in ring aromaticity/antiaromaticity, with the switch from ground-state singlet ions to triplet-favored ions resulting from both a destabilized singlet state (Hückel antiaromatic) and a stabilized triplet (Baird aromatic) state. Density functional theory (UB3LYP/6-31+G(d,p)) was used to determine substituent effects on the singlet-triplet energy gap for azulenyl nitrenium and oxenium ions, and we find that the unusual ground triplet states can be further tuned by employing electron-donating or -withdrawing groups on the azulene ring. This work demonstrates that azulenyl nitrenium and oxenium ions can have triplet π,π* ground states and provides a simple recipe for making ionic intermediates with distinct electronic configurations and consequent prediction of unique reactivity and magnetic properties from these species.

In Search of the Perfect Photocage: Structure-Reactivity Relationships in meso-Methyl BODIPY Photoremovable Protecting Groups

A detailed investigation of the photophysical parameters and photochemical reactivity of meso-methyl BODIPY photoremovable protecting groups was accomplished through systematic variation of the leaving group (LG) and core substituents as well as substitutions at boron. Efficiencies of the LG release were evaluated using both steady-state and transient absorption spectroscopies as well as computational analyses to identify the optimal structural features. We find that the quantum yields for photorelease with this photocage are highly sensitive to substituent effects. In particular, we find that the quantum yields of photorelease are improved with derivatives with higher intersystem crossing quantum yields, which can be promoted by core heavy atoms. Moreover, release quantum yields are dramatically improved by boron alkylation, whereas alkylation in the meso-methyl position has no effect. Better LGs are released considerably more efficiently than poorer LGs. We find that these substituent effects are additive, for example, a 2,6-diiodo-B-dimethyl BODIPY photocage features quantum yields of 28% for the mediocre LG acetate and a 95% quantum yield of release for chloride. The high chemical and quantum yields combined with the outstanding absorption properties of BODIPY dyes lead to photocages with uncaging cross sections over 10 000 M^-1 cm^-1, values that surpass cross sections of related photocages absorbing visible light. These new photocages, which absorb strongly near the second harmonic of an Nd:YAG laser (532 nm), hold promise for manipulating and interrogating biological and material systems with the high spatiotemporal control provided by pulsed laser irradiation, while avoiding the phototoxicity problems encountered with many UV-absorbing photocages. More generally, the insights gained from this structure-reactivity relationship may aid in the development of new highly efficient photoreactions.

Direct Detection of the Open-Shell Singlet Phenyloxenium Ion: An Atom-Centered Diradical Reacts as an Electrophile

A new photoprecursor to the phenyloxenium ion, 4-methoxyphenoxypyridinium tetrafluoroborate, was investigated using trapping studies, product analysis, computational investigations, and laser flash photolysis experiments ranging from the femtosecond to the millisecond time scale. These experiments allowed us to trace the complete arc of the photophysics and photochemistry of this photoprecursor beginning with the initially populated excited states to its sequential formation of transient intermediates and ultimate formation of stable photoproducts. We find that the excited state of the photoprecursor undergoes heterolysis to generate the phenyloxenium ion in ∼2 ps but surprisingly generates the ion in its open-shell singlet diradical configuration (¹A₂), permitting an unexpected look at the reactivity of an atom-centered open-shell singlet diradical. The open-shell phenyloxenium ion (¹A₂) has a much shorter lifetime (τ ∼ 0.2 ns) in acetonitrile than the previously observed closed-shell singlet (¹A₁) phenyloxenium ion (τ ∼ 5 ns). Remarkably, despite possessing no empty valence orbitals, this open-shell singlet oxenium ion behaves as an even more powerful electrophile than the closed-shell singlet oxenium ion, undergoing solvent trapping by weakly nucleophilic solvents such as water and acetonitrile or externally added nucleophiles (e.g., azide) rather than engaging in typical diradical chemistry, such as H atom abstraction, which we have previously observed for a triplet oxenium ion. In acetonitrile, the open-shell singlet oxenium ion is trapped to generate ortho and para Ritter intermediates, one of which (para) is directly observed as a longer-lived species (τ ∼ 0.1 ms) in time-resolved resonance Raman experiments. The Ritter intermediates are ultimately trapped by either the 4-methoxypyridine leaving group (in the case of para addition) or trapped internally via an essentially barrierless rearrangement (in the case of ortho addition) to generate a cyclized product. The expectation that singlet diradicals react similarly to triplet or uncoupled diradicals needs to be reconsidered, as a recent study by Perrin and Reyes-Rodríguez (J. Am. Chem. Soc. 2014, 136, 15263) suggested the unsettling possibility that singlet p-benzyne could suffer nucleophilic attack to generate a naked phenyl anion. Now, this study provides direct spectroscopic observation of this phenomenon, with an atom-centered open-shell singlet diradical reacting as a powerful electrophile. To the question of whether a nucleophile can attack a singly occupied molecular orbital, the answer is apparently yes, at least if another partially occupied orbital is available to avoid violation of the rules of valence.

Anomalous effect of non-alternant hydrocarbons on carbocation and carbanion electronic configurations

Carbocations are widely viewed to be closed-shell singlet electrophiles. Here, computations show that azulenyl-substituted carbocations have triplet ground states. This triplet ground state for azulenyl carbocations stands in striking contrast to the isomeric naphthenyl carbocation, which is a normal closed-shell singlet with a large singlet-triplet gap. Furthermore, substitution of the azulenyl carbocation can substantially alter the energy gap between the different electronic configurations and can manipulate the ground state towards either the singlet or the triplet state depending on the nature and location of the substituent. A detailed investigation into the origin of this spin state reversal, including NICS calculations, structural effects, substitution patterns, orbital analysis, and detailed linear free-energy relationships allowed us to distill a set of principles that caused these azulenyl carbocations to have such low-lying diradical states. The fundamental origin of this effect mostly centers on singlet state destabilization from increasing antiaromatic character, in combination with a smaller, but important, Baird triplet state aromatic stabilization. We find that azulene is not unique, as extension of these principles allowed us to generate simple rules to predict an entire class of analogous non-alternant carbocation and carbanion structures with low-energy or ground state diradical states, including a purely hydrocarbon triplet cation with a large singlet-triplet gap of 8 kcal mol-1. Although these ions have innocuous-looking Lewis structures, these triplet diradical ions are likely to have substantially different reactivity and properties than typical closed-shell singlet ions.

New photoheterolysis precursors to study oxenium ions: combining experiment and theory

The combination of theoretical calculations and laser flash photolysis experiments has aided in understanding the reactivity and properties of oxenium ions.

Direct Spectroscopic Detection and EPR Investigation of a Ground State Triplet Phenyl Oxenium Ion

Oxenium ions are important reactive intermediates in synthetic chemistry and enzymology, but little is known of the reactivity, lifetimes, spectroscopic signatures, and electronic configurations of these unstable species. Recent advances have allowed these short-lived ions to be directly detected in solution from laser flash photolysis of suitable photochemical precursors, but all of the studies to date have focused on aryloxenium ions having closed-shell singlet ground state configurations. To study alternative spin configurations, we synthesized a photoprecursor to the m-dimethylamino phenyloxenium ion, which is predicted by both density functional theory and MRMP2 computations to have a triplet ground state electronic configuration. A combination of femtosecond and nanosecond transient absorption spectroscopy, nanosecond time-resolved Resonance Raman spectroscopy (ns-TR(3)), cryogenic matrix EPR spectroscopy, computational analysis, and photoproduct studies allowed us to trace essentially the complete arc of the photophysics and photochemistry of this photoprecursor and permitted a first look at a triplet oxenium ion. Ultraviolet photoexcitation of this precursor populates higher singlet excited states, which after internal conversion to S1 over 800 fs are followed by bond heterolysis in ∼1 ps, generating a hot closed-shell singlet oxenium ion that undergoes vibrational cooling in ∼50 ps followed by intersystem crossing in ∼300 ps to generate the triplet ground state oxenium ion. In contrast to the rapid trapping of singlet phenyloxenium ions by nucleophiles seen in prior studies, the triplet oxenium ion reacts via sequential H atom abstractions on the microsecond time domain to ultimately yield the reduced m-dimethylaminophenol as the only detectable stable photoproduct. Band assignments were made by comparisons to computed spectra of candidate intermediates and comparisons to related known species. The triplet oxenium ion was also detected in the ns-TR(3) experiments, permitting a more clear assignment and identifying the triplet state as the π,π* triplet configuration. The triplet ground state of this ion was further supported by photolysis of the photoprecursor in an ethanol glass at ∼4 K and observing a triplet species by cryogenic EPR spectroscopy.

BODIPY-derived photoremovable protecting groups unmasked with green light

Photoremovable protecting groups derived from meso-substituted BODIPY dyes release acetic acid with green wavelengths >500 nm. Photorelease is demonstrated in cultured S2 cells. The photocaging structures were identified by our previously proposed strategy of computationally searching for carbocations with low-energy diradical states as a possible indicator of a nearby productive conical intersection. The superior optical properties of these photocages make them promising alternatives to the popular o-nitrobenzyl photocage systems.

A radical spin on viologen polymers: organic spin crossover materials in water

A polymer containing viologen radical cation monomer units is shown to reversibly switch between paramagnetic and diamagnetic statesvianon-covalent host–guest interactions or temperature control in water.