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Penack O, Henke E, Suh D, King C, Smith M, Na IK, Holland A, Ghosh A, Lu S, Jenq R, Liu C, May C, Murphy G, Lu T, Gao D, Mittal V, Benezra R, van den Brink M. Depletion of Vascular Endothelial Progenitor Cells Simultaneously Ameliorates GVHD and Inhibits Tumor Growth. Biol Blood Marrow Transplant 2009. [DOI: 10.1016/j.bbmt.2008.12.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Lu S, Willis L, Charbonneau-Allard AM, Atallah R, Holland A, Turbide C, Hubbard V, Rotolo J, Smith O, Suh D, King C, Rao U, Yim N, Kochman A, Bautista J, Jenq R, Zakrzewski J, Tran H, Penack O, Na IK, Chow M, Lin J, Cabrera-Perez J, Liu C, Murphy G, Alpdogan O, Blumberg R, Macian F, Holmes K, Beauchemin N, van den Brink M. Ceacam1 Regulates Experimental Graft-Versus-Host-Disease. Biol Blood Marrow Transplant 2009. [DOI: 10.1016/j.bbmt.2008.12.038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Lu S, Na IK, Goldberg G, Ghosh A, Hirschhorn-Cymerman D, King C, Smith O, Suh D, Rao U, Yim N, Holland A, Penack O, Jenq R, Teisch L, Meykler S, Lin J, Sepulveda A, Merghoub T, Houghton A, van den Brink M. The T Cell Cytolytic Molecules Fas Ligand And Trail, The Trafficking Molecules CCR9, β7 Integrin And PSGL1, And The Immune Modulating Molecules OX40 And Ceacam1 Are Required For Thymic Graft-Versus-Host Disease. Biol Blood Marrow Transplant 2009. [DOI: 10.1016/j.bbmt.2008.12.379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Suh D, Yoon W, Shibahara M, Jung S. Molecular dynamics analysis of multiple site growth and coalescence effects on homogeneous and heterogeneous nucleations. J Chem Phys 2008; 128:154523. [DOI: 10.1063/1.2904459] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Kappel L, Goldberg G, Ivanov I, Na IK, King C, Suh D, Smith O, Ligh C, Littman D, van den Brink M. 27: IL-17 is Required for CD4-Mediated GVHD. Biol Blood Marrow Transplant 2008. [DOI: 10.1016/j.bbmt.2007.12.035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Zakrzewski J, Suh D, Markley J, Smith O, King C, Goldberg G, Jenq R, Holland A, Grubin J, Cabrera-Perez J, Lu S, Rizzuto G, Sant'Angelo D, Riviere I, Sadelain M, Zuniga-Pflucker J, van den Brink M. 344: Off-the-Shelf Tumor Immunotherapy with Genetically Enhanced Allogeneic T-Cell Precursors. Biol Blood Marrow Transplant 2008. [DOI: 10.1016/j.bbmt.2007.12.354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Park J, Nam J, Kim D, Suh D, Kim J, Kim Y. 364: The Comparison of Laparoscopic Radical Trachelectomy and Laparoscopic Radical Hysterectomy in Stage IB1 Cervical Cancer; Surgical and Oncological Safety. J Minim Invasive Gynecol 2007. [DOI: 10.1016/j.jmig.2007.08.343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Kim J, Lim Y, Lee H, Kim K, Suh D, Won H, Choi E, Ahn S, Yoon S, Kim J. Role of Radiotherapy in Treatment of Portal Vein Thrombosis From Advanced Hepatocellular Carcinoma. Int J Radiat Oncol Biol Phys 2007. [DOI: 10.1016/j.ijrobp.2007.07.1347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Suh D, Shin S, Kwak Y, Kwak Y, Song K, Youn Y. 296: External Validation of Out-of-Hospital Stroke Evaluation Criteria for EMT-Basics. Ann Emerg Med 2007. [DOI: 10.1016/j.annemergmed.2007.06.282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Alpdogan O, McGoldrick S, Lu S, Patel N, Suh D, Smith O, van den Brink M. Peripheral T cell apoptosis affects immune reconstitution after allogeneic BMT. Biol Blood Marrow Transplant 2006. [DOI: 10.1016/j.bbmt.2005.11.252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Borsotti C, Keating A, Kochman A, Suh D, Smith O, Kim T, Alpdogan O, van den Brink M. The role of membrane bound TNF in GVHD and GVT activity by alloreactive T cells. Biol Blood Marrow Transplant 2006. [DOI: 10.1016/j.bbmt.2005.11.152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Suh D, Ku S, Choi Y, Kim J, Moon S, Kim S. Seasonal Variation May Affect the Pregnancy Rates of Fresh Embryo Transfer Cycles, NOT in Cryopreserved-Thawed Embryo Transfer Cycles in Women With Tubal or Unexplained Infertility. Fertil Steril 2005. [DOI: 10.1016/j.fertnstert.2005.07.637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Chen Y, Valicenti R, Suh D, Houser C, Galvin J. SU-FF-J-90: An Accurate Method for Determining Prostate Shift and Rotation Using Portal Images with Implanted Fiducial Seeds. Med Phys 2005. [DOI: 10.1118/1.1997636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Byun HM, Suh D, Yoon H, Kim JM, Choi HG, Kim WK, Ko JJ, Oh YK. Erythrocyte ghost-mediated gene delivery for prolonged and blood-targeted expression. Gene Ther 2004; 11:492-6. [PMID: 14973541 DOI: 10.1038/sj.gt.3302180] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
This study reports the use of erythrocyte ghosts (EG) as a biocompatible nonviral delivery system for extended circulation and prolonged expression of plasmid DNA in the blood. Murine interleukin-2-expressing plasmid DNA was efficiently loaded to EG by electroporation in hypotonic condition. The presence of plasmid DNA in EG was confirmed by fluorescence-labeled plasmid DNA. At 21 min after intravenous administration into mice, the level of plasmid DNA in the blood was 92 000-fold higher following EG-mediated delivery as compared to the injection of naked form. EG-mediated gene delivery revealed higher and more prolonged mRNA expression levels of plasmid DNA in the blood until 9 days after the single intravenous injection. Moreover, plasmid DNA-loaded EG showed gene expression targeted to the blood cells. At 3 days post-dose, substantial expression levels of plasmid DNA delivered in EG were observed only in the blood and not in the other organs. Of the blood cells, the subpopulation containing granulocytes showed higher expression of plasmid DNA than mononuclear cells. These results indicate the potential of EG as a safe, prolonged and blood-targeted delivery system of therapeutic genes.
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Oh YK, Suh D, Kim JM, Choi HG, Shin K, Ko JJ. Polyethylenimine-mediated cellular uptake, nucleus trafficking and expression of cytokine plasmid DNA. Gene Ther 2002; 9:1627-32. [PMID: 12424615 DOI: 10.1038/sj.gt.3301735] [Citation(s) in RCA: 88] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2001] [Accepted: 02/17/2002] [Indexed: 11/08/2022]
Abstract
Although polyethylenimine (PEI) has been widely used as a nonviral vector, there is little mechanistic understanding on PEI-mediated delivery. Here, we studied whether the expression of murine interleukin-2 (mIL-2) plasmids could be improved by complexation with PEI at various N/P ratios, and whether the cellular uptake, nuclear translocation, and retention of plasmids could be affected by the N/P ratios. Compared with the naked mIL-2, PEI/mIL-2 complexes showed at least two orders of magnitude higher expression at Raw264 cells in the N/P ratio-dependent manner. PEI-mediated cellular uptake and nuclear trafficking of plasmids, quantitated by competitive polymerase chain reaction, also depended on the N/P ratios showing the highest cell and nuclear levels of plasmids at 10/1. The higher cellular levels of plasmid DNA after PEI-mediated delivery were also observed in other cell lines. Unlike naked plasmids, PEI/mIL-2 complexes (N/P ratios >/=4/1) showed prolonged cellular and nuclear retention of mIL-2 plasmids. The nuclear translocation and higher cellular level of plasmids given in PEI complexes were similarly observed by fluorescence microscopy. Moreover, PEI/mIL-2 complexes revealed high stability against DNase I, partly explaining the prolonged subcellular retention. These results indicate that the expression of plasmid mIL-2 might be highly enhanced by complexation with PEI and that such increased expression could be attributed by the higher cellular uptake, nuclear translocation and prolonged retention.
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Suh D. Chronicle of advocacy to increase AAPI focused objectives in Healthy People 2010: implications for tobacco-related data and research. ASIAN AMERICAN AND PACIFIC ISLANDER JOURNAL OF HEALTH 2002; 9:95-9. [PMID: 11720420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Abstract
OBJECTIVES The objectives of this chronicle is to illustrate key components of health polocy advocacy in increasing data availability and research for Asian Americans and Pacific Islanders (AAPIs). METHODS Through the examination of the evolution of AAPI data in Healthy People 2000 to Healthy People 2010, this chronicle cites parallel and convergent advocacy by AAPI health advocates and tobacco advocates with key external factors that resulted in an increase in AAPI data included in Healthy People 2010. FINDINGS In Healthy People 2000, there were eight objectives focusing on AAPIs. In Healthy People 2010, 98 objectives included some data for AAPIs and 120 objectives provided categorical reasons why AAPI data were not available. In Healthy People 2010, there was only one objective on tobacco use focusing on AAPIs. Healthy People 2010 includes 11 tobacco use objectives with either AAPI data or categorical reasons why the data were not available. Understanding why AAPI data are not available can direct advocacy efforts. CONCLUSIONS The AAPI data improvements in Healthy People 2010 have provided useful information on data availability and strategy for data development at the national level. At the same time, the limitations of the national data (lack of AAPI ethnic specific data, data collected only in English) calls for more appropriate data collection and research at the local and regional level.
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Cooper CS, Schwartz IP, Suh D, Kirsch AJ. Optimal solder and power density for diode laser tissue soldering (LTS). Lasers Surg Med 2001; 29:53-61. [PMID: 11500863 DOI: 10.1002/lsm.1086] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
BACKGROUND AND OBJECTIVE Laser tissue soldering (LTS) using albumin and indocyanine green dye (ICG) is an effective technique utilized in various reconstructive surgical procedures. The purpose of this study was to describe in vivo and in vitro temperature profiles of an albumin-based solder while varying ICG concentration and laser power density (PD), and to describe immediate and short-term tensile strength measurements and histology of tissue with variable ICG concentrations and PD. STUDY DESIGN/MATERIALS AND METHODS ICG ranged from 0.31 to 20 mg/mL while PD ranged from 3.2 to 63.7 W/cm(2). Direct solder temperature measurements were obtained at 5-second intervals during laser activation. Differential temperature measurements were determined within the dermis of rat skin and the overlying solder. Eighteen rats were subjected to 2.0-cm incisions (n = 113) created on the dorsal skin followed by closure with LTS at varying PD and ICG concentrations. ICG concentrations included 0.31, 2.5, and 20 mg/mL, while PD ranged from 8.0 to 63.7 W/cm(2). Tensile strength (TS) profiles were measured immediately and 10 days post-operatively. Histological examination was performed at the time of sacrifice. RESULTS Temperature profiles of the ICG/albumin solder differed significantly only at the highest concentration of ICG (20 mg/mL), but showed statistically significant variability at different laser PD. Using solder color changes as an endpoint of LTS, average peak solder temperature ranged from 69 degrees C at a PD of 8.0 W/cm(2), 105 degrees -120 degrees C at PD 15.9-31.8 W/cm(2), and > 200 degrees C at PD > or = 47.7 W/cm(2). Peak intradermal temperatures remained below 50 degrees C at all PDs. Varying ICG concentration only had an effect on the immediate TS of wounds at the lowest power densities. Increasing PD resulted in statistically significant increases in immediate TS up to a PD of 23.9 W/cm(2) at an ICG concentrations of 0.31 and up to a PD of 15.9 W/cm(2) at a concentration of 2.5 mg/mL. Statistically insignificant decreases in 10-day would strength resulted from higher PD. Power densities > or = 23.9 W/cm(2) showed significant thermal injury upon histologic examination. CONCLUSIONS Power density, not ICG concentration, is the primary determinant of solder and tissue temperature during LTS. Effective and reproducible laser tissue soldering may be achieved primarily by power density control when using diode laser and ICG-based albumin solder. Alterations in PD show the most direct and predictable effects on the healing properties of skin closed by LTS. Optimal laser wound closure occurs with an ICG of 2.5 mg/mL and at a PD between 15.9 and 23.9 W/cm(2).
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Wilkins JT, Krivickas LS, Goldstein R, Suh D, Frontera WR. Contractile properties of adjacent segments of single human muscle fibers. Muscle Nerve 2001; 24:1319-26. [PMID: 11562911 DOI: 10.1002/mus.1150] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
A comparison of the contractile properties of adjacent segments of single human muscle fibers may help to explain the interaction among nuclear domains within the myofiber. Biopsy samples were obtained from the vastus lateralis muscle of 20 healthy untrained women (age 18-79 years). Single fibers (n = 38) were dissected and cut into halves (segments A and B). Segment diameter and depth were measured using an image analysis system. Maximal force (Po) was recorded during activation with calcium (pCa 4.5). Maximal unloaded shortening velocity (Vo) was calculated using the slack test. Myosin heavy chain (MyHC) expression was determined using sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE). A significant difference ( approximately 7%) in Po was seen between adjacent segments expressing type I MyHC that could not be attributed to differences in fiber size. Significant differences were observed in Vo even after adjusting for fiber type. A positive correlation was seen in Po (concordance coefficient Rho_C = 0.803) and Vo (Rho_C = 0.690) between segments, but concordance was less than perfect in both cases. Possible explanations for nonuniformity of contractile properties include random variations in physiological systems or variability of protein expression among nuclear domains.
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Krivickas LS, Suh D, Wilkins J, Hughes VA, Roubenoff R, Frontera WR. Age- and gender-related differences in maximum shortening velocity of skeletal muscle fibers. Am J Phys Med Rehabil 2001; 80:447-455; quiz 456-7. [PMID: 11399006 DOI: 10.1097/00002060-200106000-00012] [Citation(s) in RCA: 103] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
OBJECTIVE To determine age- and gender-related differences in maximum unloaded shortening velocity (Vo) of Type I and IIA single muscle fibers. Muscle fibers must have a broad range of contractile velocities to generate the full range of power required for varied activities. DESIGN Percutaneous needle biopsies of the vastus lateralis were obtained from 31 healthy subjects (n = 7 young men [YM], n = 7 young women [YW], n = 12 older men [OM], n = 12 older women [OW]). The slack test was used to determine Vo of individual fibers; 916 muscle fibers were chemically skinned. Fiber type was determined by myosin heavy chain isoform identification. RESULTS Among men, Vo (fiber lengths/sec) was reduced with age in Type IIA fibers (OM vs. YM: 1.78 vs. 2.14; P < 0.05) but unchanged in Type I fibers. Among women, Vo was reduced with age in Type I fibers (OW vs. YW: 0.70 vs. 0.75; P < 0.05) but not IIA. OW had a lower Vo than did OM in both fiber types (Type I: OW = 0.70, OM = 0.77; Type IIA: OW = 1.51, OM = 1.78; P < 0.05). YW did not differ from YM. CONCLUSIONS Both age and gender affect Vo. Age- and gender-related differences in Vo may partially explain the impairments in muscle function that occur with aging and the greater impairment in muscle function observed in OW compared with that observed in OM.
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Suh D. Environments of ethidium binding to allosteric Dna: II. Accessibility, mobility and mode of binding. Exp Mol Med 2000; 32:204-9. [PMID: 11190271 DOI: 10.1038/emm.2000.33] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
DNA binding compounds were previously shown to bind to the right-handed DNA forms and hybrid B-Z forms in a highly cooperative manner and indicate that structural specificity plays a key role in a ligand binding to DNA. In this study, the modes of binding and structural specificity of agents to unusual DNA are examined by a variety of fluorescence techniques (intensity, polarization and quenching, etc.) to explore a reliable method to detect the association environment of ligands to deoxyoligonucleotides initially containing a B-Z junction between the left-handed Z-DNA and right-handed B-DNA. The results of fluorescence energy transfer measurement demonstrated that the ligand molecules bind to the allosterically converted DNA structures by intercalation. In the absence of high-resolution structural data, this fluorescence energy transfer measurement allowed reliable measures and infer the binding environment of ligands to the allosteric DNA structures.
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Frontera WR, Suh D, Krivickas LS, Hughes VA, Goldstein R, Roubenoff R. Skeletal muscle fiber quality in older men and women. Am J Physiol Cell Physiol 2000; 279:C611-8. [PMID: 10942711 DOI: 10.1152/ajpcell.2000.279.3.c611] [Citation(s) in RCA: 261] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Whole muscle strength and cross-sectional area (WMCSA), and contractile properties of chemically skinned segments from single fibers of the quadriceps were studied in 7 young men (YM, 36.5 +/- 3. 0 yr), 12 older men (OM, 74.4 +/- 5.9 yr), and 12 older women (OW, 72.1 +/- 4.3 yr). WMCSA was smaller in OM compared with YM (56.1 +/- 10.1 vs. 79.7 +/- 13.1 cm(2); P = 0.031) and in OW (44.9 +/- 7.5; P < 0.003) compared with OM. Age-related, but not sex-related, differences in strength were eliminated after adjusting for WMCSA. Maximal force was measured in 552 type I and 230 type IIA fibers. Fibers from YM (type I = 725 +/- 221; type IIA = 792 +/- 271 microN) were stronger (P < 0.001) than fibers from OM (I = 505 +/- 179; IIA = 577 +/- 262 microN) even after correcting for size. Type IIA fibers were stronger (P < 0.005) than type I fibers in YM and OM but not in OW (I = 472 +/- 154; IIA = 422 +/- 97 microN). Sex-related differences in type I and IIA fibers were dependent on fiber size. In conclusion, differences in WMCSA explain age-related differences in strength. An intrinsic defect in contractile proteins could explain weakness in single fibers from OM. Sex-related differences exist at the whole muscle and single fiber levels.
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Abstract
Muscle fiber contractile dysfunction in myotonic dystrophy (MD) is poorly understood. We biopsied the tibialis anterior of two symptomatic and three asymptomatic subjects (aged 21-31 years) with the MD mutation. Biopsies were freeze dried. A total of 103 single muscle fibers were activated with Ca(++), allowing maximal force measurements and specific force (SF) estimates. The slack test was performed to calculate maximum unloaded shortening velocity (V(o)). The myosin heavy chain composition of each fiber was determined using sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE). Type I and IIA fibers of all subjects had reduced SF when compared with healthy control subjects (P < 0.001). In addition, the type I fibers of symptomatic subjects generated less SF than those of asymptomatic subjects (P < 0.001). Type I fibers from asymptomatic and symptomatic subjects did not differ in V(o), but V(o) was lower than in control subjects (P < 0.001). There was no significant difference in V(o) of type IIA fibers from symptomatic, asymptomatic, and control subjects. These results indicate that the MD mutation leads to a diminished force-generating capacity of the myofilaments in both symptomatic and asymptomatic individuals. The results further suggest that reduction in force-generating capacity at the cellular level develops prior to clinical weakness.
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Krieger N, Quesenberry C, Peng T, Horn-Ross P, Stewart S, Brown S, Swallen K, Guillermo T, Suh D, Alvarez-Martinez L, Ward F. Social class, race/ethnicity, and incidence of breast, cervix, colon, lung, and prostate cancer among Asian, Black, Hispanic, and White residents of the San Francisco Bay Area, 1988-92 (United States). Cancer Causes Control 1999; 10:525-37. [PMID: 10616822 DOI: 10.1023/a:1008950210967] [Citation(s) in RCA: 178] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
BACKGROUND To date only eight US studies have simultaneously examined cancer incidence in relation to social class and race/ethnicity; all but one included only black and white Americans. To address gaps in knowledge we thus investigated socioeconomic gradients in cancer incidence among four mutually exclusive US racial/ethnic groups-- Asian and Pacific Islander, black, Hispanic, and white-- for five major cancer sites: breast, cervix, colon, lung, and prostate cancer. METHODS We generated age-adjusted cancer incidence rates stratified by socioeconomic position using: (a) geocoded cancer registry records, (b) census population counts, and (c) 1990 census block-group socioeconomic measures. Cases (n = 70,899) were diagnosed between 1988 and 1992 and lived in seven counties located in California's San Francisco Bay Area. RESULTS Incidence rates varied as much if not more by socioeconomic position than by race/ethnicity, and for each site the magnitude - and in some cases direction - of the socioeconomic gradient differed by race/ethnicity and, where applicable, by gender. Breast cancer incidence increased with affluence only among Hispanic women. Incidence of cervical cancer increased with socioeconomic deprivation among all four racial/ethnic groups, with trends strongest among white women. Lung cancer incidence increased with socioeconomic deprivation among all but Hispanics, for whom incidence increased with affluence. Colon and prostate cancer incidence were inconsistently associated with socioeconomic position. CONCLUSIONS These complex patterns defy easy generalization and illustrate why US cancer data should be stratified by socioeconomic position, along with race/ethnicity and gender, so as to improve cancer surveillance, research, and control.
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Abstract
The specific association of drugs with deoxyoligonucleotides, containing a B-Z junction between left-handed Z-DNA and right-handed B-DNA, was examined by fluorescence and circular dichroism (CD) technique. Ethidium was chosen for a simple DNA binding compound because it binds to right-handed DNA and hybrid B-Z forms containing a B-Z junction in a highly cooperative manner. The binding isotherms were analyzed by an allosteric model in order to describe the cooperativity of association. Binding of ethidium to the DNA that are initially in the hybrid B-Z forms showed over an order of magnitude higher affinity than other DNA which were entirely in the B-form. The conformational transitions of deoxyoligonucleotides containing a B-Z junction as a result of ethidium binding were monitored by CD and the influence of NaCl on the complex formation was also determined by the CD spectra. The singular value decomposition (SVD) analysis was used to characterize a family of CD spectra of the species in binding equilibria. The results of SVD analysis showed a strikingly complex thermodynamic equilibria of cooperative binding of drugs to the allosterically converted DNA forms. The results also showed that these DNA forms in low- and high-salt were different in the absence or presence of drug. These results demonstrate that DNA-binding-drugs can preferentially interact with specific DNA structures and that these interactions are accompanied by allosteric changes of DNA conformations.
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Bailly C, Suh D, Waring MJ, Chaires JB. Binding of daunomycin to diaminopurine- and/or inosine-substituted DNA. Biochemistry 1998; 37:1033-45. [PMID: 9454594 DOI: 10.1021/bi9716128] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The binding of the anticancer drug daunomycin to double-helical DNA has been investigated by DNase I footprinting and fluorescence titration, using a series of polymerase chain reaction (PCR) synthesized DNA fragments that contained systematic base substitutions to alter the disposition of functional groups within the minor groove. The 160 bp tyrT DNA fragment constituted the starting material. Fragments in which (i) inosine was substituted for guanosine, (ii) diaminopurine was substituted for adenine, and (iii) both inosine and diaminopurine were substituted for guanosine and adenine, respectively, were studied. These fragments permit the role of the 2-amino group in the minor groove to be systematically explored. The results of DNase I footprinting experiments confirmed that daunomycin binds preferentially to 5'(A/T)GC and 5'(A/T)CG triplets in the normal fragment. Substitution of inosine for guanosine, with the concomitant loss of the N-2 in the minor groove, weakened binding affinity but did not dramatically alter the sequence preference associated with daunomycin binding. Complete reversal of the location of the N-2 group by the double substitution, however, completely altered the sequence preference of daunomycin and shifted its binding from the canonical triplets to ones with a 5'IDD motif. These results have critically tested and confirmed the proposed key roles of the daunosamine moiety and the 9-OH group of daunomycin in dictating binding to preferred sites. In a parallel study, both macroscopic and microscopic binding to the normal tyrT fragment were investigated, experiments made possible by using PCR to prepare large quantities of the long, defined DNA sequence. The results of these experiments underscored the complexity of the interaction of the drug with the DNA lattice and revealed unequivocal heterogeneity in its affinity for different binding sites. A class of high-affinity sites, most probably corresponding to the 5'(A/T)GC and 5'(A/T)CG triplets, was identified and characterized in macroscopic binding isotherms.
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