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Nash A, Simpson K, Harvey J, Kelley M, Lessne M. Abstract No. 629 Adverse event rates as a marker of quality in thoracenteses: is it feasible for use in a radiologic practice? J Vasc Interv Radiol 2020. [DOI: 10.1016/j.jvir.2019.12.690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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Kelley M, Rentfrow G, Lindemann M, Wang D. Effect of Different Fat Sources and Vitamin E Isoforms/Levels on Carcass Characteristics and Meat Quality of Pigs Grown to 150 Kg. MEAT AND MUSCLE BIOLOGY 2019. [DOI: 10.22175/mmb.10813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Abstract
ObjectivesThe objective was to evaluate the effect of supplementing α- and γ-tocopherol vitamin E isoforms with corn oil and tallow on carcass characteristics and meat quality of pigs grown to heavier weights (>150 kg).Materials and MethodsIndividually fed pigs (n = 72; 36 barrows, 36 gilts; 28.55 ± 1.16 kg) were randomly assigned to 12 dietary treatments in a 2 × 6 factorial arrangement. Fat treatments were tallow and corn oil (5?). The vitamin E treatments included four levels of α-tocopheryl-acetate (ATA; 11, 40, 100, and 200 ppm) and two levels of mixed tocopherols (primarily γ-tocopherol; 40 and 100 ppm). Pigs were humanely slaughtered at approximately 150 kg. 45 min pH was taken at the 10th rib. After 24 h chill (4°C), carcass measurements were taken (carcass length, backfat depth at first rib, last rib, 10th rib and last lumbar, loin muscle area, and 24 h pH at the 10th rib). In addition, wholesale weights from the Boston butt (IMPS #406), shoulder picnic (IMPS #405), loin (IMPS #412), and belly (IMPS #408) and spareribs were recorded. Furthermore, bellies were divided into eight sections and the average depth was taken at each section and the vertical and lateral belly flex was measured. Drip loss was determined by suspending a 1.3cm chop at 4°C for 48 h and purge loss was determined from approximately 2kg vacuum packaged loin muscle sections at 0, 7, 14, and 30d. Objective (Hunter Lab Colorimeter XE Plus) and subjective (NPPC color, marbling and firmness scores) measurements were taken at the 10th rib. Data analysis were performed in SAS by least squares analysis of variance using the generalized linear model as a randomized complete block design. The individual pig served as the experimental unit and results were reported as least square means.ResultsThere were no differences in dressing percentage, 24 h pH, backfat depth, loin muscle area, primal cuts, purge loss, and drip loss between the two vitamin E isoforms. Fat treatments did not affect dressing percentage, 45 min and 24 h pH, backfat depth, loin muscle area, primal cuts, purge loss, drip loss as well as objective and subjective color. Although not significant (P = 0.07), pork from the γ-tocopherol pigs had a lower pH than the ATA treatment. The γ-tocopherol supplementation tended to have a lighter subjective color (P = 0.06) as well as increased L*, decreased a*, and increased the hue angle calculations at 7d shelf-life. The belly depth was greater (P = 0.01) along with higher lateral (P < 0.01) and a lower vertical (P < 0.01) flex for pigs fed tallow.ConclusionIn conclusion, feeding tallow to heavy weight pigs (150 kg) could improve belly firmness. Also, α-tocopherol did not improve shelf-life stability and γ-tocopherol could negatively affect subject and objective pork loin color.
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Kelley M, Yoshida G, Myers R, Alem K, Chati P, Jora M, Addepalli B, Limbach PA. Fungicide‐induced melanin loss causes changes the transfer RNA modification pool in the radiation resistant fungi
Cladosporium sphaerospermum. FASEB J 2019. [DOI: 10.1096/fasebj.2019.33.1_supplement.630.4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Kelley M, Rentfrow G, Lindemann M, Wang D. Effect of Different Fat Sources and Vitamin E Isoforms/Levels on Carcass Characteristics and Meat Quality of Pigs Grown to 150 Kg. MEAT AND MUSCLE BIOLOGY 2019. [DOI: 10.22175/mmb2019.0068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
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Voisin B, Doebel T, Kelly M, Kobayashi T, Kim D, Yan C, Hu Y, Kelley M, Nagao K. LB1567 Ablation of macrophages from hypodermal adventitia disrupts the collagen network resulting in hyperelastic skin. J Invest Dermatol 2018. [DOI: 10.1016/j.jid.2018.06.103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Pasquerilla M, Kelley M, Mushi R, Aguinaga MDP, Erenso D. Laser trapping ionization of single human red blood cell. Biomed Phys Eng Express 2018. [DOI: 10.1088/2057-1976/aac57d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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Brahmania M, Ahmed O, Kelley M, Wong D, Kowgier M, Khalili K, Beecroft R, Renner EL, Shah H, Feld J, Janssen HLA, Sherman M. Wait Time for Curative Intent Radio Frequency Ablation is Associated with Increased Mortality in Patients with Early Stage Hepatocellular Carcinoma. Ann Hepatol 2018; 16:765-771. [PMID: 28809734 DOI: 10.5604/01.3001.0010.2776] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
INTRODUCTION Radiofrequency ablation (RFA) is a recommended curative intent treatment option for patients with early stage hepatocellular carcinoma (HCC). We investigated if wait times for RFA were associated with residual tumor, tumor recurrence, need for liver transplantation, or death. MATERIAL AND METHODS We conducted a retrospective study of patients diagnosed with HCC between January 2010 and December 2013 presenting to University Health Network (UHN) in Toronto, Canada. All patients receiving curative intent RFA for HCC were included. Multivariable Cox regression was used to determine if wait times were associated with clinical outcomes. RESULTS 219 patients were included in the study. 72.6% were male and the median age was 62.7 years (IQR 55.6-71). Median tumor size at diagnosis was 21.5 mm (IQR 17-26); median MELD was 8.7 (IQR 7.2-11.4) and 57.1% were Barcelona stage 0. The cause of liver disease was viral hepatitis in 73.5% (Hepatitis B and C). The median time from HCC diagnosis to RFA treatment was 96 days (IQR 75-139). In multivariate analysis, wait time was not associated with requiring liver transplant or tumor recurrence, however, each incremental 30-day wait time was associated with an increased risk of residual tumor (HR = 1.09; 95% CI 1.01-1.19; p = 0.033) as well as death (HR = 1.23; 95% CI 1.11-1.36; p ≤ 0.001). CONCLUSION Incremental 30-day wait times are associated with a 9% increased risk of residual tumor and a 23% increased risk of death. We have identified system gaps where quality improvement measures can be implemented to reduce wait times and allocate resources for future RFA treatment, which may improve both quality and efficiency of HCC care.
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Miao L, Kelly M, Barkdull S, Kelley M, Brownell I. 1388 Applying FACS-seq to study mouse Merkel cell development. J Invest Dermatol 2018. [DOI: 10.1016/j.jid.2018.03.1405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Anderson H, Daheron L, Savvidis G, Negre H, Nag A, Thorner A, Liu X, Gu S, Hu X, Kelley M, Chow S, Daley H, Manduke R, Hwa A, Pagliuca F, Ritz J. Safety considerations in the generation of clinical grade autologous ips cell lines. Cytotherapy 2018. [DOI: 10.1016/j.jcyt.2018.02.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Negre H, Pinte L, Manduke R, Cunningham A, Anderson H, Richard S, Khelladi R, Mai J, Chow S, Kelley M, Daley H, Sturtevant O, Nikiforow S, Ritz J. Personnel environmental monitoring during manufacture of manipulated cell therapy products. Cytotherapy 2018. [DOI: 10.1016/j.jcyt.2018.02.192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Daley H, Richard S, Negre H, Nikiforow S, Sturtevant O, Wood A, Kelley M, Ritz J. Developing a robust competency program for the GMP novel cell therapy laboratory in the cell manipulation core facility laboratory at Dana-Farber Cancer Institute, Boston. Cytotherapy 2018. [DOI: 10.1016/j.jcyt.2018.02.224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Hookey L, Kelley M, Marchut K, Green J, Bechara R. Colon Capsule Visualization Is Not Enhanced with Prucalopride: A Randomized Controlled Trial. J Can Assoc Gastroenterol 2018; 1:20-25. [PMID: 31294392 PMCID: PMC6487980 DOI: 10.1093/jcag/gwy005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
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Kelley M, Myers R, Jora M, Addepalli B, Limbach P. The effects of peroxide exposure on the transfer RNA of radiotrophic
C. neoformans. FASEB J 2018. [DOI: 10.1096/fasebj.2018.32.1_supplement.526.36] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Ahmed O, Brahmania M, Kelley M, Kowgier M, Khalili K, Beecroft R, Renner E, Wong D, Shah H, Feld J, Janssen HL, Sherman M. A77 TRACKING WAIT TIMES AND OUTCOMES OF RADIOFREQUENCY ABLATION IN PATIENTS WITH HEPATOCELLULAR CARCINOMA: A QUALITY IMPROVEMENT INITIATIVE. J Can Assoc Gastroenterol 2018. [DOI: 10.1093/jcag/gwy008.078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Romanou A, Marshall J, Kelley M, Scott J. Role of the Ocean's AMOC in setting the Uptake Efficiency of Transient Tracers. GEOPHYSICAL RESEARCH LETTERS 2017; 44:5590-5598. [PMID: 29962556 PMCID: PMC6021758 DOI: 10.1002/2017gl072972] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The central role played by the ocean's Atlantic Meridional Overturning Circulation (AMOC) in the uptake and sequestration of transient tracers is studied in a series of experiments with the GISS and MIT ocean circulation models. Forced by observed atmospheric timeseries of CFC-11, both models exhibit realistic distributions in the ocean, with similar surface biases but different response over time. To better understand what controls uptake, we ran idealized forcing experiments in which the AMOC strength varied over a wide range, bracketing the observations. We found that differences in the strength and vertical scale of the AMOC largely accounted for the different rates of CFC-11 uptake and vertical distribution thereof. A 2-box model enables us to quantify, and relate uptake efficiency of passive tracers to AMOC strength and how uptake efficiency decreases in time. We also discuss the relationship between passive tracer and heat uptake efficiency, of which the latter controls the transient climate response to anthropogenic forcing in the North Atlantic. We find that heat uptake efficiency is substantially less (by about a factor of five) than that for a passive tracer.
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Kelley M, Buathong S, Dunning FB. Very strong Rydberg atom scattering in K(12p)–CH3NO2collisions: Role of transient ion pair formation. J Chem Phys 2017. [DOI: 10.1063/1.4982935] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Doebel T, Voisin B, Kelly M, Kobayashi T, Sohn S, Kelley M, Nagao K. 628 Heterogeneity and cytokine-dependency of macrophages in skin layers. J Invest Dermatol 2017. [DOI: 10.1016/j.jid.2017.02.650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Nazarenko L, Rind D, Tsigaridis K, Del Genio AD, Kelley M, Tausnev N. Interactive nature of climate change and aerosol forcing. JOURNAL OF GEOPHYSICAL RESEARCH. ATMOSPHERES : JGR 2017; 122:3457-3480. [PMID: 32818128 PMCID: PMC7430526 DOI: 10.1002/2016jd025809] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The effect of changing cloud cover on climate, based on cloud-aerosol interactions, is one of the major unknowns for climate forcing and climate sensitivity. It has two components: (1) the impact of aerosols on clouds and climate due to in situ interactions (i.e., rapid response) and (2) the effect of aerosols on the cloud feedback that arises as climate changes-climate feedback response. We examine both effects utilizing the NASA Goddard Institute for Space Studies ModelE2 to assess the indirect effect, with both mass-based and microphysical aerosol schemes, in transient twentieth century simulations. We separate the rapid response and climate feedback effects by making simulations with a coupled version of the model as well as one with no sea surface temperature or sea ice response ("atmosphere-only" simulations). We show that the indirect effect of aerosols on temperature is altered by the climate feedbacks following the ocean response, and this change differs depending upon which aerosol model is employed. Overall, the effective radiative forcing (ERF) for the "direct effect" of aerosol-radiation interaction (ERFari) ranges between -0.2 and -0.6 W m-2 for atmosphere-only experiments, while the total effective radiative forcing, including[C0]the indirect effect (ERFari+aci) varies between about -0.4 and -1.1 W m-2 for atmosphere-only simulations; both ranges are in agreement with those given in Intergovernmental Panel on Climate Change (2013). Including the full feedback of the climate system lowers these ranges to -0.2 to -0.5 W m-2 for ERFari and -0.3 to -0.74 W m-2 for ERFari+aci. With both aerosol schemes, the climate change feedbacks have reduced the global average indirect radiative effect of atmospheric aerosols relative to what the emission changes would have produced, at least partially due to its effect on tropical upper tropospheric clouds.
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Stacy NI, Field CL, Staggs L, MacLean RA, Stacy BA, Keene J, Cacela D, Pelton C, Cray C, Kelley M, Holmes S, Innis CJ. Clinicopathological findings in sea turtles assessed during the Deepwater Horizon oil spill response. ENDANGER SPECIES RES 2017. [DOI: 10.3354/esr00769] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Kelley M, Ramos P, Scheffler T. Protein Solubility during the Aging Period in Bos Taurus and Bos Indicus Beef. MEAT AND MUSCLE BIOLOGY 2017. [DOI: 10.22175/rmc2017.162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
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Buathong S, Kelley M, Dunning FB. Probing dissociative electron attachment through heavy-Rydberg ion-pair production in Rydberg atom collisions. J Chem Phys 2016; 145:134309. [DOI: 10.1063/1.4964326] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
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Geller MA, Zhou T, Shindell D, Ruedy R, Aleinov I, Nazarenko L, Tausnev NL, Kelley M, Sun S, Cheng Y, Field RD, Faluvegi G. Modeling the QBO-Improvements resulting from higher-model vertical resolution. JOURNAL OF ADVANCES IN MODELING EARTH SYSTEMS 2016; 8:1092-1105. [PMID: 27917258 PMCID: PMC5114865 DOI: 10.1002/2016ms000699] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Accepted: 06/07/2016] [Indexed: 06/06/2023]
Abstract
Using the NASA Goddard Institute for Space Studies (GISS) climate model, it is shown that with proper choice of the gravity wave momentum flux entering the stratosphere and relatively fine vertical layering of at least 500 m in the upper troposphere-lower stratosphere (UTLS), a realistic stratospheric quasi-biennial oscillation (QBO) is modeled with the proper period, amplitude, and structure down to tropopause levels. It is furthermore shown that the specified gravity wave momentum flux controls the QBO period whereas the width of the gravity wave momentum flux phase speed spectrum controls the QBO amplitude. Fine vertical layering is required for the proper downward extension to tropopause levels as this permits wave-mean flow interactions in the UTLS region to be resolved in the model. When vertical resolution is increased from 1000 to 500 m, the modeled QBO modulation of the tropical tropopause temperatures increasingly approach that from observations, and the "tape recorder" of stratospheric water vapor also approaches the observed. The transport characteristics of our GISS models are assessed using age-of-air and N2O diagnostics, and it is shown that some of the deficiencies in model transport that have been noted in previous GISS models are greatly improved for all of our tested model vertical resolutions. More realistic tropical-extratropical transport isolation, commonly referred to as the "tropical pipe," results from the finer vertical model layering required to generate a realistic QBO.
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Hosey K, Voss J, Kelley M. Innovative, but what about sustainability? Lessons learned in nursing and
midwifery workforce development. Ann Glob Health 2016. [DOI: 10.1016/j.aogh.2016.04.273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Theurich G, DeLuca C, Campbell T, Liu F, Saint K, Vertenstein M, Chen J, Oehmke R, Doyle J, Whitcomb T, Wallcraft A, Iredell M, Black T, da Silva AM, Clune T, Ferraro R, Li P, Kelley M, Aleinov I, Balaji V, Zadeh N, Jacob R, Kirtman B, Giraldo F, McCarren D, Sandgathe S, Peckham S, Dunlap R. THE EARTH SYSTEM PREDICTION SUITE: Toward a Coordinated U.S. Modeling Capability. BULLETIN OF THE AMERICAN METEOROLOGICAL SOCIETY 2016; 97:1229-1247. [PMID: 29568125 PMCID: PMC5859946 DOI: 10.1175/bams-d-14-00164.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The Earth System Prediction Suite (ESPS) is a collection of flagship U.S. weather and climate models and model components that are being instrumented to conform to interoperability conventions, documented to follow metadata standards, and made available either under open source terms or to credentialed users. The ESPS represents a culmination of efforts to create a common Earth system model architecture, and the advent of increasingly coordinated model development activities in the U.S. ESPS component interfaces are based on the Earth System Modeling Framework (ESMF), community-developed software for building and coupling models, and the National Unified Operational Prediction Capability (NUOPC) Layer, a set of ESMF-based component templates and interoperability conventions. This shared infrastructure simplifies the process of model coupling by guaranteeing that components conform to a set of technical and semantic behaviors. The ESPS encourages distributed, multi-agency development of coupled modeling systems, controlled experimentation and testing, and exploration of novel model configurations, such as those motivated by research involving managed and interactive ensembles. ESPS codes include the Navy Global Environmental Model (NavGEM), HYbrid Coordinate Ocean Model (HYCOM), and Coupled Ocean Atmosphere Mesoscale Prediction System (COAMPS®); the NOAA Environmental Modeling System (NEMS) and the Modular Ocean Model (MOM); the Community Earth System Model (CESM); and the NASA ModelE climate model and GEOS-5 atmospheric general circulation model.
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Graham JM, Zadeh N, Kelley M, Tan ES, Liew W, Tan V, Deardorff MA, Wilson GN, Sagi-Dain L, Shalev SA. KCNK9 imprinting syndrome-further delineation of a possible treatable disorder. Am J Med Genet A 2016; 170:2632-7. [PMID: 27151206 DOI: 10.1002/ajmg.a.37740] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Accepted: 04/04/2016] [Indexed: 11/10/2022]
Abstract
Patients with KCNK9 imprinting syndrome demonstrate congenital hypotonia, variable cleft palate, normal MRIs and EEGs, delayed development, and feeding problems. Associated facial dysmorphic features include dolichocephaly with bitemporal narrowing, short philtrum, tented upper lip, palatal abnormalities, and small mandible. This disorder maps to chromosomal region 8q24, and it is caused by a specific missense mutation 770G>A in exon 2, replacing glycine at position 236 by arginine (G236R) in the maternal copy of KCNK9 within this locus. KCNK9 (also called TASK3) encodes a member of the two pore- domain potassium channel (K2P) subfamily. This gene is normally imprinted with paternal silencing, thus a mutation in the maternal copy of the gene will result in disease, whereas a mutation in the paternal copy will have no effect. Exome sequencing in four new patients with developmental delay and central hypotonia revealed de novo G236R mutations. Older members of a previously reported Arab-Israeli family have intellectual disability of variable severity, persistent feeding difficulties in infancy with dysphagia of liquids and dysphonia with a muffled voice in early adulthood, generalized hypotonia, weakness of proximal muscles, elongated face with narrow bitemporal diameter, and reduced facial movements. We describe the clinical features in four recently recognized younger patients and compare them with those found in members of the originally reported Arab-Israeli family and suggest this may be a treatable disorder. © 2016 Wiley Periodicals, Inc.
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