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Kohlmeier A, Robins J, Pavone M, Zhang J. Ploidy status impacts growth rate post-embryonic genome activation. Fertil Steril 2017. [DOI: 10.1016/j.fertnstert.2017.07.1032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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52
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Pavone M, Moravek M, Lawson A, Klock S, Confino R, Smith K, Kazer R. Fertility preservation (FP) in breast cancer patients does not delay time to cancer treatment. Fertil Steril 2017. [DOI: 10.1016/j.fertnstert.2017.07.546] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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53
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Huang C, Muñoz-García AB, Pavone M. Effective scheme for partitioning covalent bonds in density-functional embedding theory: From molecules to extended covalent systems. J Chem Phys 2016; 145:244103. [DOI: 10.1063/1.4972012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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54
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Saygili Y, Söderberg M, Pellet N, Giordano F, Cao Y, Muñoz-García AB, Zakeeruddin SM, Vlachopoulos N, Pavone M, Boschloo G, Kavan L, Moser JE, Grätzel M, Hagfeldt A, Freitag M. Copper Bipyridyl Redox Mediators for Dye-Sensitized Solar Cells with High Photovoltage. J Am Chem Soc 2016; 138:15087-15096. [PMID: 27749064 DOI: 10.1021/jacs.6b10721] [Citation(s) in RCA: 124] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Redox mediators play a major role determining the photocurrent and the photovoltage in dye-sensitized solar cells (DSCs). To maintain the photocurrent, the reduction of oxidized dye by the redox mediator should be significantly faster than the electron back transfer between TiO2 and the oxidized dye. The driving force for dye regeneration with the redox mediator should be sufficiently low to provide high photovoltages. With the introduction of our new copper complexes as promising redox mediators in DSCs both criteria are satisfied to enhance power conversion efficiencies. In this study, two copper bipyridyl complexes, Cu(II/I)(dmby)2TFSI2/1 (0.97 V vs SHE, dmby = 6,6'-dimethyl-2,2'-bipyridine) and Cu(II/I)(tmby)2TFSI2/1 (0.87 V vs SHE, tmby = 4,4',6,6'-tetramethyl-2,2'-bipyridine), are presented as new redox couples for DSCs. They are compared to previously reported Cu(II/I)(dmp)2TFSI2/1 (0.93 V vs SHE, dmp = bis(2,9-dimethyl-1,10-phenanthroline). Due to the small reorganization energy between Cu(I) and Cu(II) species, these copper complexes can sufficiently regenerate the oxidized dye molecules with close to unity yield at driving force potentials as low as 0.1 V. The high photovoltages of over 1.0 V were achieved by the series of copper complex based redox mediators without compromising photocurrent densities. Despite the small driving forces for dye regeneration, fast and efficient dye regeneration (2-3 μs) was observed for both complexes. As another advantage, the electron back transfer (recombination) rates were slower with Cu(II/I)(tmby)2TFSI2/1 as evidenced by longer lifetimes. The solar-to-electrical power conversion efficiencies for [Cu(tmby)2]2+/1+, [Cu(dmby)2]2+/1+, and [Cu(dmp)2]2+/1+ based electrolytes were 10.3%, 10.0%, and 10.3%, respectively, using the organic Y123 dye under 1000 W m-2 AM1.5G illumination. The high photovoltaic performance of Cu-based redox mediators underlines the significant potential of the new redox mediators and points to a new research and development direction for DSCs.
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Triggiani L, Muñoz-García AB, Agostiano A, Pavone M. Promoting oxygen vacancy formation and p-type conductivity in SrTiO 3via alkali metal doping: a first principles study. Phys Chem Chem Phys 2016; 18:28951-28959. [PMID: 27725978 DOI: 10.1039/c6cp05089a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Strontium titanate (SrTiO3, STO) is a prototypical perovskite oxide, widely exploited in many technological applications, from catalysis to energy conversion devices. In the context of solid-oxide fuel cells, STO has been recently applied as an epitaxial substrate for nano-sized layers of mixed ion-electron conductive catalysts with enhanced electrochemical performances. To extend the applications of such heterogeneous nano-cathodes in real devices, also the STO support should be active for both electron transport and oxide diffusion. To this end, we explored using first-principles calculations the strategy of doping of STO at the Sr site with sodium and potassium. These two ions fit in the perovskite structure and induce holes in the STO valence band, so as to obtain the desired p-type electronic conduction. At the same time, the doping with alkali ions also promotes the formation of oxygen vacancies in STO, a prerequisite for effective oxide diffusion. Analysis of electron density rearrangements upon defect formation allows relating the favorable vacancy formation energies to an improved electronic delocalization over the oxide sub-lattice, as observed in closely related materials (e.g. Sr2Fe1.5Mo0.5O6). Overall, our results suggest the alkali-doped STO as a new potential substrate material in nanoscale heterogeneous electrodes for solid oxide electrochemical cells.
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Pavone M, Kelsh J, Malpani S, Confino R, Jasti S, Briley S, Zhang J, Duncan F. Cytokine antibody array profiling in human follicular fluid as a potential marker for oocyte quality. Fertil Steril 2016. [DOI: 10.1016/j.fertnstert.2016.07.554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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57
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Zhang J, Pavone M, Lawson A, Robins J. Is the additional information from time-lapse monitoring useful in embryo assessment. Fertil Steril 2016. [DOI: 10.1016/j.fertnstert.2016.07.1013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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58
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Muñoz-García AB, Massaro A, Pavone M. Ab initio study of PbCr (1-x)S x O 4 solid solution: an inside look at Van Gogh Yellow degradation. Chem Sci 2016; 7:4197-4203. [PMID: 30155065 PMCID: PMC6014092 DOI: 10.1039/c5sc04362j] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2015] [Accepted: 03/09/2016] [Indexed: 11/21/2022] Open
Abstract
Van Gogh Yellow refers to a family of lead chromate pigments widely used in the 19th century and often mixed with lead sulfate to obtain different yellow hues. Unfortunately, some paintings, such as the famous Sunflowers series, suffered degradation problems due to photoactivated darkening of once bright yellow areas, especially when irradiated with UV light. Recent advanced spectroscopic analyses have proved that this process occurs mostly where the pigment presents a sulfur-rich orthorhombic phase of a PbCr(1-x)S x O4 solid solution, while chromium-rich monoclinic phases are lightfast. However, the question of whether degradation is purely a surface phenomenon or if the bulk properties of sulfur-rich pigments trigger the process is still open. Here, we use first-principles calculations to unveil the role of sulfur in determining important bulk features such as structure, stability, and optical properties. From our findings, we suggest that degradation occurs via an initial local segregation of lead sulfate that absorbs at UV light wavelengths and provides the necessary energy for subsequent reduction of chromate ions into the greenish chromic oxide detected in experiments. In perspective, our results set reliable scientific foundations for further studies on surface browning phenomena and can help to chose the best strategy for the proper conservation of art masterpieces.
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Galeotti A, Festa P, Pavone M, De Vincentiis GC. Effects of simultaneous palatal expansion and mandibular advancement in a child suffering from OSA. ACTA OTORHINOLARYNGOLOGICA ITALICA 2016; 36:328-332. [PMID: 27070538 PMCID: PMC5066471 DOI: 10.14639/0392-100x-548] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2014] [Accepted: 02/04/2015] [Indexed: 11/23/2022]
Abstract
This clinical report describes a child suffering from obstructive sleep apnoea (OSA) and class II skeletal malocclusion with maxillary contraction and anterior open bite. He presented moderate obstructive sleep apnoea with large impact on quality of life of patient and parents. He was treated using an innovative orthodontic device (Sleep Apnea Twin Expander) to simultaneously carry out palatal expansion and mandibular advancement. After orthodontic therapy, the OSA-18 questionnaire demonstrated an improvement of the main respiratory symptoms, while cardiorespiratory sleep study revealed a reduction in obstructive sleep apnoea events. Post-treatment, clinical assessment and cephalometric analysis showed a reduction of sagittal maxillary discrepancy and an extension of upper airway space. In conclusion, this case report suggests that orthodontic treatment might be a valuable alternative treatment in children with obstructive sleep apnoea related to craniofacial anomalies.
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Bortoletto P, Confino R, Lyttle M, Smith B, Woodruff K, Pavone M. Practices and attitudes regarding women undergoing fertility preservation: a survey of the national physicians cooperative (NPC). Fertil Steril 2016. [DOI: 10.1016/j.fertnstert.2015.12.059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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61
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Minei P, Fanizza E, Rodríguez AM, Muñoz-García AB, Cimino P, Pavone M, Pucci A. Cost-effective solar concentrators based on red fluorescent Zn(ii)–salicylaldiminato complex. RSC Adv 2016. [DOI: 10.1039/c5ra23049g] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A red light and concentrated zinc complex embedded in PMMA yields a cost-effective and efficient luminescent solar concentrator.
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62
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Muñoz-García AB, Sannino F, Vitiello G, Pirozzi D, Minieri L, Aronne A, Pernice P, Pavone M, D'Errico G. Origin and Electronic Features of Reactive Oxygen Species at Hybrid Zirconia-Acetylacetonate Interfaces. ACS APPLIED MATERIALS & INTERFACES 2015; 7:21662-7. [PMID: 26394654 DOI: 10.1021/acsami.5b06988] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The hybrid sol-gel zirconia-acetylacetonate amorphous material (HSGZ) shows high catalytic activity in oxidative degradation reactions without light or thermal pretreatment. This peculiar HSGZ ability derives from the generation of highly reactive oxygen radical species (ROS) upon exposure to air at room conditions. We disclose the origin of such unique feature by combining EPR and DRUV measurements with first-principles calculations. The organic ligand acetylacetonate (acac) plays a pivotal role in generating and stabilizing the superoxide radical species at the HSGZ-air interfaces. Our results lead the path toward further development of HSGZ and related hybrid materials for ROS-based energy and environmental applications.
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63
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Triggiani L, Muñoz-García AB, Agostiano A, Pavone M. First-principles study of trimethylamine adsorption on anatase TiO2 nanorod surfaces. Theor Chem Acc 2015. [DOI: 10.1007/s00214-015-1721-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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64
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Tan T, Pavone M, Krisiloff DB, Carter EA. Correction to “Ab Initio Reaction Kinetics of Hydrogen Abstraction from Methyl Formate by Hydrogen, Methyl, Oxygen, Hydroxyl, and Hydroperoxy Radicals”. J Phys Chem A 2015; 119:2186. [DOI: 10.1021/acs.jpca.5b01185] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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65
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Muñoz-García AB, Pavone M. Structure and energy level alignment at the dye–electrode interface in p-type DSSCs: new hints on the role of anchoring modes from ab initio calculations. Phys Chem Chem Phys 2015; 17:12238-46. [DOI: 10.1039/c5cp01020a] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The thermodynamic driving force for hole injection in p-DSSCs is maximized by the dye anchoring modes that minimize electrode surface distortions.
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66
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Muñoz-García AB, Ritzmann AM, Pavone M, Keith JA, Carter EA. Oxygen transport in perovskite-type solid oxide fuel cell materials: insights from quantum mechanics. Acc Chem Res 2014; 47:3340-8. [PMID: 24972154 DOI: 10.1021/ar4003174] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
CONSPECTUS: Global advances in industrialization are precipitating increasingly rapid consumption of fossil fuel resources and heightened levels of atmospheric CO2. World sustainability requires viable sources of renewable energy and its efficient use. First-principles quantum mechanics (QM) studies can help guide developments in energy technologies by characterizing complex material properties and predicting reaction mechanisms at the atomic scale. QM can provide unbiased, qualitative guidelines for experimentally tailoring materials for energy applications. This Account primarily reviews our recent QM studies of electrode materials for solid oxide fuel cells (SOFCs), a promising technology for clean, efficient power generation. SOFCs presently must operate at very high temperatures to allow transport of oxygen ions and electrons through solid-state electrolytes and electrodes. High temperatures, however, engender slow startup times and accelerate material degradation. SOFC technologies need cathode and anode materials that function well at lower temperatures, which have been realized with mixed ion-electron conductor (MIEC) materials. Unfortunately, the complexity of MIECs has inhibited the rational tailoring of improved SOFC materials. Here, we gather theoretically obtained insights into oxygen ion conductivity in two classes of perovskite-type materials for SOFC applications: the conventional La1-xSrxMO3 family (M = Cr, Mn, Fe, Co) and the new, promising class of Sr2Fe2-xMoxO6 materials. Using density functional theory + U (DFT+U) with U-J values obtained from ab initio theory, we have characterized the accompanying electronic structures for the two processes that govern ionic diffusion in these materials: (i) oxygen vacancy formation and (ii) vacancy-mediated oxygen migration. We show how the corresponding macroscopic oxygen diffusion coefficient can be accurately obtained in terms of microscopic quantities calculated with first-principles QM. We find that the oxygen vacancy formation energy is a robust descriptor for evaluating oxide ion transport properties. We also find it has a direct relationship with (i) the transition metal-oxygen bond strength and (ii) the extent to which electrons left behind by the departing oxygen delocalize onto the oxygen sublattice. Design principles from our QM results may guide further development of perovskite-based MIEC materials for SOFC applications.
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Caldarelli V, Salerno T, Verrillo E, Pavone M, Macchiaiolo M, Soldini S, Bartuli A, Cutrera R. Hypercapnic hypoventilation due to tracheobroncomalacia: the success of non-invasive respiratory support with continuous positive airway pressure. Minerva Anestesiol 2014; 80:259-260. [PMID: 24226496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
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68
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Oyeyemi VB, Krisiloff DB, Keith JA, Libisch F, Pavone M, Carter EA. Size-extensivity-corrected multireference configuration interaction schemes to accurately predict bond dissociation energies of oxygenated hydrocarbons. J Chem Phys 2014; 140:044317. [DOI: 10.1063/1.4862159] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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69
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Maranzana A, Giordana A, Indarto A, Tonachini G, Barone V, Causà M, Pavone M. Density functional theory study of the interaction of vinyl radical, ethyne, and ethene with benzene, aimed to define an affordable computational level to investigate stability trends in large van der Waals complexes. J Chem Phys 2013; 139:244306. [DOI: 10.1063/1.4846295] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
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70
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Pavone M, Malpani S, Dyson M, Monsivais D, Mittal N, Bulun S. Differences in retinoid uptake and metabolism alters paracrine signaling in endometriosis. Fertil Steril 2013. [DOI: 10.1016/j.fertnstert.2013.07.196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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71
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Caldarelli V, Gregoretti C, Paglietti MG, Pavone M, Bertaina A, Chiarini Testa MB, Cutrera R. Late respiratory failure after hematopoietic stem cells transplant: just "lung failure"? Minerva Anestesiol 2013; 79:969-970. [PMID: 23449246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
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72
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Muñoz-García AB, Pavone M, Ritzmann AM, Carter EA. Oxide ion transport in Sr2Fe1.5Mo0.5O6−δ, a mixed ion-electron conductor: new insights from first principles modeling. Phys Chem Chem Phys 2013; 15:6250-9. [DOI: 10.1039/c3cp50995h] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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73
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Libisch F, Huang C, Liao P, Pavone M, Carter EA. Origin of the energy barrier to chemical reactions of O2 on Al(111): evidence for charge transfer, not spin selection. PHYSICAL REVIEW LETTERS 2012; 109:198303. [PMID: 23215432 DOI: 10.1103/physrevlett.109.198303] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2012] [Indexed: 05/11/2023]
Abstract
Dissociative adsorption of molecular oxygen on the Al(111) surface exhibits mechanistic complexity that remains surprisingly poorly understood in terms of the underlying physics. Experiments clearly indicate substantial energy barriers and a mysteriously large number of adsorbed single oxygen atoms instead of pairs. Conventional first principles quantum mechanics (density functional theory) predicts no energy barrier at all; instead, spin selection rules have been invoked to explain the barrier. In this Letter, we show that correct barriers arise naturally when embedded correlated electron wave functions are used to capture the physics of the interaction of O(2) with the metal surface. The barrier originates from an abrupt charge transfer (from metal to oxygen), which is properly treated within correlated wave function theory but not within conventional density functional theory. Our potential energy surfaces also identify oxygen atom abstraction as the dominant reaction pathway at low incident energies, consistent with measurements, and show that charge transfer occurs in a stepwise fashion.
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Tan T, Pavone M, Krisiloff DB, Carter EA. Ab Initio Reaction Kinetics of Hydrogen Abstraction from Methyl Formate by Hydrogen, Methyl, Oxygen, Hydroxyl, and Hydroperoxy Radicals. J Phys Chem A 2012; 116:8431-43. [DOI: 10.1021/jp304811z] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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75
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Caruso P, Causà M, Cimino P, Crescenzi O, D’Amore M, Improta R, Pavone M, Rega N. Effects of molecular dynamics and solvation on the electronic structure of molecular probes. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1211-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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76
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Muñoz-García AB, Bugaris DE, Pavone M, Hodges JP, Huq A, Chen F, zur Loye HC, Carter EA. Unveiling Structure–Property Relationships in Sr2Fe1.5Mo0.5O6−δ, an Electrode Material for Symmetric Solid Oxide Fuel Cells. J Am Chem Soc 2012; 134:6826-33. [DOI: 10.1021/ja300831k] [Citation(s) in RCA: 138] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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77
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Oyeyemi VB, Keith JA, Pavone M, Carter EA. Insufficient Hartree-Fock Exchange in Hybrid DFT Functionals Produces Bent Alkynyl Radical Structures. J Phys Chem Lett 2012; 3:289-293. [PMID: 26285841 DOI: 10.1021/jz201564g] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Density functional theory (DFT) is often used to determine the electronic and geometric structures of molecules. While studying alkynyl radicals, we discovered that DFT exchange-correlation (XC) functionals containing less than ∼22% Hartree-Fock (HF) exchange led to qualitatively different structures than those predicted from ab initio HF and post-HF calculations or DFT XCs containing 25% or more HF exchange. We attribute this discrepancy to rehybridization at the radical center due to electron delocalization across the triple bonds of the alkynyl groups, which itself is an artifact of self-interaction and delocalization errors. Inclusion of sufficient exact exchange reduces these errors and suppresses this erroneous delocalization; we find that a threshold amount is needed for accurate structure determinations. Below this threshold, significant errors in predicted alkyne thermochemistry emerge as a consequence.
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78
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Oyeyemi VB, Pavone M, Carter EA. Accurate Bond Energies of Hydrocarbons from Complete Basis Set Extrapolated Multi-Reference Singles and Doubles Configuration Interaction. Chemphyschem 2011; 12:3354-64. [DOI: 10.1002/cphc.201100447] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2011] [Revised: 10/09/2011] [Indexed: 11/11/2022]
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79
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Huang C, Pavone M, Carter EA. Quantum mechanical embedding theory based on a unique embedding potential. J Chem Phys 2011; 134:154110. [DOI: 10.1063/1.3577516] [Citation(s) in RCA: 208] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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80
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Pavone M, Biczysko M, Rega N, Barone V. Magnetic Properties of Nitroxide Spin Probes: Reliable Account of Molecular Motions and Nonspecific Solvent Effects by Time-Dependent and Time-Independent Approaches. J Phys Chem B 2010; 114:11509-14. [DOI: 10.1021/jp102232c] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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81
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Barone V, Casarin M, Forrer D, Pavone M, Sambi M, Vittadini A. Role and effective treatment of dispersive forces in materials: Polyethylene and graphite crystals as test cases. J Comput Chem 2009; 30:934-9. [DOI: 10.1002/jcc.21112] [Citation(s) in RCA: 575] [Impact Index Per Article: 38.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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82
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Pedone A, Pavone M, Menziani MC, Barone V. Accurate First-Principle Prediction of 29Si and 17O NMR Parameters in SiO2 Polymorphs: The Cases of Zeolites Sigma-2 and Ferrierite. J Chem Theory Comput 2008; 4:2130-40. [DOI: 10.1021/ct8003035] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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83
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Pagano B, Pavone M, Piccinelli AL, Rastrelli L, Cuesta-Rubio O, Mattia CA, Barone V. Structural and conformational investigation of nemorosone: A combined X-ray and quantum mechanical study. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.07.104] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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84
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Pavone M, Rega N, Barone V. Implementation and validation of DFT-D for molecular vibrations and dynamics: The benzene dimer as a case study. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2007.12.075] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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85
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Pasquini M, Schiccheri N, Piani G, Pietraperzia G, Becucci M, Biczysko M, Pavone M, Barone V. Isotopomeric Conformational Changes in the Anisole−Water Complex: New Insights from HR-UV Spectroscopy and Theoretical Studies. J Phys Chem A 2007; 111:12363-71. [DOI: 10.1021/jp0757558] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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86
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Biczysko M, Piani G, Pasquini M, Schiccheri N, Pietraperzia G, Becucci M, Pavone M, Barone V. On the properties of microsolvated molecules in the ground (S0) and excited (S1) states: The anisole-ammonia 1:1 complex. J Chem Phys 2007; 127:144303. [DOI: 10.1063/1.2767265] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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87
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Cimino P, Pavone M, Barone V. Halogen bonds between 2,2,6,6-tetramethylpiperidine-N-oxyl radical and CxHyFzI species: DFT calculations of physicochemical properties and comparison with hydrogen bonded adducts. J Phys Chem A 2007; 111:8482-90. [PMID: 17685598 DOI: 10.1021/jp073567b] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Structural, thermodynamic, and magnetic properties of adducts between the 2,2,6,6-tetramethylpiperidine-N-oxyl radical and representative hydrogen and halogen bond donors in solution have been investigated by an integrated computational tool including hybrid density functionals and discrete-continuum solvent models. From a quantitative point of view, the computed values show a fair agreement with experiment when environmental effects are taken into the proper account. From a more general point of view, our analysis points out a number of analogies, but also some difference, between hydrogen and halogen bond, which have been interpreted in terms of the various effects tuning thermodynamic and spectroscopic parameters.
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Pavone M, Cimino P, Crescenzi O, Sillanpää A, Barone V. Interplay of Intrinsic, Environmental, and Dynamic Effects in Tuning the EPR Parameters of Nitroxides: Further Insights from an Integrated Computational Approach. J Phys Chem B 2007; 111:8928-39. [PMID: 17608525 DOI: 10.1021/jp0727805] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The role of stereoelectronic, environmental, and short-time dynamic effects in tuning the hyperfine and gyromagnetic tensors of a prototypical nitroxide spin probe has been investigated by an integrated computational approach based on extended Lagrangian molecular dynamics and discrete-continuum solvent models. Trajectories were generated in two protic solvents as well as in the gas phase for reference; structural analysis of the dynamics, and comparison with optimized solute-solvent clusters, allowed for the identification of the prevailing solute-solvent hydrogen-bonding patterns and helped to define the strategy for the computation of magnetic parameters. This was performed in a separate step, on a large number of frames, by a high-level DFT approach coupling the PBE0 hybrid functional with a tailored basis set and with proper account of specific and bulk solvent effects. Remarkable changes in solvation networks are found on going from aqueous to methanol solution, thus providing a rationalization of indirect experimentally available evidence. The computed magnetic parameters are in satisfactory agreement with the available measured values and allow for an unbiased evaluation of the role of different effects in tuning the overall EPR observables. Apart from their intrinsic interest, our results pave the route toward the development of tunable detection protocols based on specific spectroscopic signatures.
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Barone V, Cimino P, Crescenzi O, Pavone M. Ab initio computation of spectroscopic parameters as a tool for the structural elucidation of organic systems. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.theochem.2006.12.056] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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90
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Joubert L, Pavone M, Barone V, Adamo C. Comparative Static and Dynamic Study of a Prototype SN2 Reaction. J Chem Theory Comput 2006; 2:1220-7. [DOI: 10.1021/ct0600159] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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91
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Pavone M, Sillanpää A, Cimino P, Crescenzi O, Barone V. Evidence of Variable H-Bond Network for Nitroxide Radicals in Protic Solvents. J Phys Chem B 2006; 110:16189-92. [PMID: 16913739 DOI: 10.1021/jp063872h] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This letter presents the results of a thorough computational investigation of two prototypical nitroxide spin probes in two different protic solvents, namely water and methanol, based on the combined use of Car-Parrinello molecular dynamic simulations and static cluster/continuum quantum chemical computations. Remarkable changes in solvation networks were found on going from aqueous to methanolic solutions. Moreover, despite their structural similarity, the two nitroxide probes display quite different behaviors in water. This provides a rationalization of indirect experimentally available indications. Eventually, the combination of static and dynamical ab initio methods exploited in the present study allows to dissect many subtle features of the nitroxide-solvent interaction, and also allows for an analysis of solvent effects on magnetic parameters (hyperfine coupling constants and g-tensor shift).
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92
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Pavone M, Cimino P, De Angelis F, Barone V. Interplay of Stereoelectronic and Enviromental Effects in Tuning the Structural and Magnetic Properties of a Prototypical Spin Probe: Further Insights from a First Principle Dynamical Approach. J Am Chem Soc 2006; 128:4338-47. [PMID: 16569010 DOI: 10.1021/ja0574872] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The nitrogen isotropic hyperfine coupling constant (hcc) and the g tensor of a prototypical spin probe (di-tert-butyl nitroxide, DTBN) in aqueous solution have been investigated by means of an integrated computational approach including Car-Parrinello molecular dynamics and quantum mechanical calculations involving a discrete-continuum embedding. The quantitative agreement between computed and experimental parameters fully validates our integrated approach. Decoupling of the structural, dynamical, and environmental contributions acting onto the spectral observables allows an unbiased judgment of the role played by different effects in determining the overall experimental observables and highlights the importance of finite-temperature vibrational averaging. Together with their intrinsic interest, our results pave the route toward more reliable interpretations of EPR parameters of complex systems of biological and technological relevance.
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Pavone M, Crescenzi O, Morelli G, Rega N, Barone V. Solvent Effects on the UV (n → π*) and NMR (17O) Spectra of Acetone in Aqueous Solution: Development and Validation of a Modified AMBER Force Field for an Integrated MD/DFT/PCM Approach. Theor Chem Acc 2006. [DOI: 10.1007/s00214-006-0098-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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94
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Cimino P, Pavone M, Barone V. Structural, thermodynamic, and magnetic properties of adducts between TEMPO radical and alcohols in solution: New insights from DFT and discrete–continuum solvent models. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2005.11.067] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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95
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Pavone M, Brancato G, Morelli G, Barone V. Spectroscopic Properties in the Liquid Phase: Combining High-Level Ab Initio Calculations and Classical Molecular Dynamics. Chemphyschem 2006; 7:148-56. [PMID: 16331721 DOI: 10.1002/cphc.200500357] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
We present an integrated computational tool, rooted in density functional theory, the polarizable continuum model, and classical molecular dynamics employing spherical boundary conditions, to study the spectroscopic observables of molecules in solution. As a test case, a modified OPLS-AA force field has been developed and used to compute the UV and NMR spectra of acetone in aqueous solution. The results show that provided the classical force fields are carefully reparameterized and validated, the proposed approach is robust and effective, and can also be used by nonspecialists to provide a general and powerful complement to experimental techniques.
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96
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Pavone M, Paglietti MG, Petrone A, Crinò A, De Vincentiis GC, Cutrera R. Adenotonsillectomy for obstructive sleep apnea in children with Prader-Willi syndrome. Pediatr Pulmonol 2006; 41:74-9. [PMID: 16283627 DOI: 10.1002/ppul.20334] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The aim of our study was to evaluate the efficacy of adenotonsillectomy for the treatment of obstructive sleep apnea syndrome (OSA) in pediatric patients with Prader-Willi syndrome (PWS), and to describe the postoperative complications. Five patients (4 males; median age, 4.4 years; range, 1.6-14.2 years) were studied. All patients underwent an overnight cardiorespiratory sleep study. All patients had adenotonsillar hypertrophy (ATH), and two were also obese. The preoperative obstructive apnea/hypopnea index (AHI; median and range) was 12.2 (9.0-19.9) events/hr; the mean oxygen saturation was 95 (79-96)%; the nadir oxygen saturation was 71 (58-78)%; and the oxygen desaturation index (ODI) was 15.8 (11.4-35.9) events/hr. Preoperatively, patients were classified as having moderate to severe OSA. A second sleep study, performed 16 (3-43) months after adenotonsillectomy, showed a significant decrease in AHI (P = 0.009) and ODI (P = 0.009). Mean and nadir oxygen saturation did not differ significantly postsurgery (P = 0.188, P = 0.073, respectively). Four out of five children showed at least one postoperative complication. Difficult awakening from anesthesia, hemorrhages, and respiratory complications requiring reintubation and/or supplemental oxygen administration were observed. In conclusion, patients with PWS and OSA who underwent adenotonsillectomy showed a significant decrease in AHI and number of oxygen desaturations.
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Grisolia GA, Pinzauti E, Pancani S, Pavone M. Paediatric burns in the acute phase: specific aspects. ANNALS OF BURNS AND FIRE DISASTERS 2005; 18:185-189. [PMID: 21991004 PMCID: PMC3188009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 12/20/2004] [Indexed: 05/31/2023]
Abstract
This paper deals with specific aspects of paediatric burns in the acute phase and considers how the treatment of burned children differs from that of burned adults. The epidemiology of paediatric burns is reviewed. Particular aspects of the treatment of burned children are presented, with regard to treatment at the site of the accident, first aid, resuscitation, and local treatment. The importance of the accurate assessment of paediatric burns is stressed.
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Crescenzi O, Pavone M, De Angelis F, Barone V. Solvent Effects on the UV (n → π*) and NMR (13C and 17O) Spectra of Acetone in Aqueous Solution. An Integrated Car−Parrinello and DFT/PCM Approach. J Phys Chem B 2004; 109:445-53. [PMID: 16851035 DOI: 10.1021/jp046334i] [Citation(s) in RCA: 102] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The accurate reproduction of ultraviolet and nuclear magnetic resonance spectra of acetone in aqueous solution is used as a test of an integrated computational tool rooted in the density functional theory, the polarizable continuum model, and the Car-Parrinello dynamics. The analysis and solution of several conceptual and practical issues results in a robust and effective approach, which also can be used by nonspecialists and provides a general and powerful complement to experimental techniques.
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van der Heijden AG, Kiemeney LA, Gofrit ON, Nativ O, Sidi A, Leib Z, Colombo R, Naspro R, Pavone M, Baniel J, Hasner F, Witjes JA. Preliminary European results of local microwave hyperthermia and chemotherapy treatment in intermediate or high risk superficial transitional cell carcinoma of the bladder. Eur Urol 2004; 46:65-71; discussion 71-2. [PMID: 15183549 DOI: 10.1016/j.eururo.2004.01.019] [Citation(s) in RCA: 130] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/21/2004] [Indexed: 12/11/2022]
Abstract
INTRODUCTION Superficial bladder cancer can be treated by transurethral resection (TUR) and adjuvant intravesical therapy. Intravesical bacillus Calmette-Guérin (BCG) has been proven to be more efficacious with respect to recurrence prevention than intravesical chemotherapy, although at the cost of more severe side effects. There is a need for a new treatment modality with higher efficacy and less toxicity. The subject of this study is the efficacy of local microwave hyperthermia and chemotherapy treatment in intermediate or high risk superficial transitional cell carcinoma (TCC) of the bladder. PATIENTS AND METHODS Ninety eligible patients received adjuvant treatment with a combination of mitomycin-C (MMC) and local microwave hyperthermia. All patients had multiple or recurrent Ta or T1 TCC of the bladder and were classified as intermediate or high risk according to EAU criteria. In total, 41 patients were BCG failures. The treatment regimen included 6 to 8 weekly sessions followed by 4 to 6 monthly sessions. Follow-up consisted of video-cystoscopy and urine cytology every 3 months. All patients were observed for 2 years. RESULTS Kaplan-Meier analyses of the total group (N = 90) indicated that 1 year after treatment only 14.3% (SE 4.5%) of all patients experienced a recurrence. After 2 years of follow-up the risk of recurrence was 24.6% (SE 5.9%). No progression in stage and grade was observed. CONCLUSION Microwave induced hyperthermia combined with MMC has promising value in intermediate or high risk superficial bladder cancer patients compared to literature data of BCG and/or intravesical chemotherapy, particularly where other treatments, i.e. BCG, have failed.
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Benzi C, Crescenzi O, Pavone M, Barone V. Reliable NMR chemical shifts for molecules in solution by methods rooted in density functional theory. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2004; 42 Spec no:S57-S67. [PMID: 15366042 DOI: 10.1002/mrc.1447] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The conceptual and numerical problems involved in the computation of reliable NMR chemical shifts for molecules in condensed phases are analyzed with reference to a number of case studies ranging from aromatic compounds in low-polarity solvents to carbonyl and amidic models in aqueous solution and to large polypeptides. The results show that an integrated tool including the most recent density functionals, mixed discrete-continuum solvent models, hybrid QM/MM approaches and, when needed, averaging from molecular dynamics simulations are becoming an invaluable complement to experimental results.
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