26
|
Shayeghi A, Schäfer R, Rayner DM, Johnston RL, Fielicke A. Charge-induced dipole vs. relativistically enhanced covalent interactions in Ar-tagged Au-Ag tetramers and pentamers. J Chem Phys 2015; 143:024310. [PMID: 26178108 DOI: 10.1063/1.4923255] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Vibrational spectra of Au(n)Ag(m)(+)⋅Ar(k) (n + m = 4, 5; k = 1-4) clusters are determined by far-infrared resonant multiple photon dissociation spectroscopy in the range ν̃=100-250 cm(-1). The experimental spectra are assigned using density functional theory for geometries obtained by the Birmingham cluster genetic algorithm. Putative global minimum candidates of the Ar complexes are generated by adding Ar atoms to the Au(n)Ag(m)(+) low energy isomers and subsequent local optimization. Differential Ar binding energies indicate exceptionally strong Au-Ar bonds in Au-rich clusters, leading to fundamental changes to the IR spectra. The stronger Ar binding is attributed to a relativistically enhanced covalent character of the Au-Ar bond, while in Au-rich species charge-induced dipole interactions overcompensate the relativistic affinity to Au. Moreover, not only the absolute composition but also the topologies are essential in the description of Ar binding to a certain cluster.
Collapse
|
27
|
Zomer A, Maynard C, Verweij FJ, Kamermans A, Schäfer R, Beerling E, Schiffelers RM, de Wit E, Berenguer J, Ellenbroek SIJ, Wurdinger T, Pegtel DM, van Rheenen J. In Vivo imaging reveals extracellular vesicle-mediated phenocopying of metastatic behavior. Cell 2015; 161:1046-1057. [PMID: 26000481 PMCID: PMC4448148 DOI: 10.1016/j.cell.2015.04.042] [Citation(s) in RCA: 657] [Impact Index Per Article: 73.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Revised: 02/06/2015] [Accepted: 04/02/2015] [Indexed: 12/21/2022]
Abstract
Most cancer cells release heterogeneous populations of extracellular vesicles (EVs) containing proteins, lipids, and nucleic acids. In vitro experiments showed that EV uptake can lead to transfer of functional mRNA and altered cellular behavior. However, similar in vivo experiments remain challenging because cells that take up EVs cannot be discriminated from non-EV-receiving cells. Here, we used the Cre-LoxP system to directly identify tumor cells that take up EVs in vivo. We show that EVs released by malignant tumor cells are taken up by less malignant tumor cells located within the same and within distant tumors and that these EVs carry mRNAs involved in migration and metastasis. By intravital imaging, we show that the less malignant tumor cells that take up EVs display enhanced migratory behavior and metastatic capacity. We postulate that tumor cells locally and systemically share molecules carried by EVs in vivo and that this affects cellular behavior.
Collapse
|
28
|
Heidland A, Heidbreder E, Hörl WH, Schäfer R. Calcium antagonists in the treatment of hypertension. CONTRIBUTIONS TO NEPHROLOGY 2015; 33:254-69. [PMID: 6749422 DOI: 10.1159/000407080] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
|
29
|
Korbmacher B, Botzet K, Ulbrich S, Dalyanoglu H, Schipke J, Franz M, Lichtenberg A, Schäfer R. Indication for Perioperative Psychotherapeutic Interventions in Indentified CABG and Mitral Valve Patients. Thorac Cardiovasc Surg 2015. [DOI: 10.1055/s-0035-1544338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
|
30
|
Shayeghi A, Götz D, Davis JBA, Schäfer R, Johnston RL. Pool-BCGA: a parallelised generation-free genetic algorithm for the ab initio global optimisation of nanoalloy clusters. Phys Chem Chem Phys 2014; 17:2104-12. [PMID: 25482360 DOI: 10.1039/c4cp04323e] [Citation(s) in RCA: 75] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Birmingham cluster genetic algorithm is a package that performs global optimisations for homo- and bimetallic clusters based on either first principles methods or empirical potentials. Here, we present a new parallel implementation of the code which employs a pool strategy in order to eliminate sequential steps and significantly improve performance. The new approach meets all requirements of an evolutionary algorithm and contains the main features of the previous implementation. The performance of the pool genetic algorithm is tested using the Gupta potential for the global optimisation of the Au10Pd10 cluster, which demonstrates the high efficiency of the method. The new implementation is also used for the global optimisation of the Au10 and Au20 clusters directly at the density functional theory level.
Collapse
|
31
|
Shayeghi A, Johnston RL, Schäfer R. Communication: Global minimum search of Ag 10+ with molecular beam optical spectroscopy. J Chem Phys 2014; 141:181104. [DOI: 10.1063/1.4901109] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
|
32
|
Shayeghi A, Heard CJ, Johnston RL, Schäfer R. Optical and electronic properties of mixed Ag-Au tetramer cations. J Chem Phys 2014; 140:054312. [PMID: 24511945 DOI: 10.1063/1.4863443] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
We present experimental and theoretical studies of the optical response of mixed Ag(n)Au(+)(4-n) (n=1-3) clusters in the photon energy range ℏω = 1.9-3.5 eV. Absorption spectra are recorded by a newly built longitudinal molecular beam depletion spectroscopy apparatus providing lower limits to absolute photodissociation cross sections. The experimental data are compared to optical response calculations in the framework of long-range corrected time-dependent density functional theory with initial cluster geometries obtained by the unbiased Birmingham Cluster Genetic Algorithm coupled with density functional theory. Experiments and excited state calculations shed light on the structural and electronic properties of the mixed Ag-Au tetramer cations.
Collapse
|
33
|
Mamlouk S, Childs L, Redmer T, Bläker H, Aust D, Schäfer R, Sers C. 685: Linking tumor evolution and therapy response using diagnostic targeted next generation sequencing in colorectal cancer. Eur J Cancer 2014. [DOI: 10.1016/s0959-8049(14)50604-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
34
|
Schäfer R, Woenckhaus J, Becker JA, Hensel F. Polarizabilities of Isolated Silicon Clusters. ACTA ACUST UNITED AC 2014. [DOI: 10.1515/zna-1995-4-518] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The static electric polarizabilities a of silicon clusters with up to 60 atoms have been measured employing a mass selective molecular beam deflection method. The polarizability per atom αN = α/N of the SiN-clusters has been investigated for Si11 and the size ranges N = 14-28, 22-34, 28-44, 34-50, 41 -58, and 42-68. The results show that the polarizability per atom decreases from N = 11 until a minimum at N≥28 is reached. The polarizability per atom increases for N > 28, passes through a maximum at N≈36 and finally converges between N≈50-70 against the value αN =1.9Å3. If the model of a homogeneous dielectric sphere is applied to the larger clusters one calculates that the value αN =1.9Å3 corresponds to a dielectric constant of ε = 3.2. This value is significantly smaller than the dielectric constant of bulk silicon εb = 11.8.
The present paper focuses on the maximum in the polarizability at N≈36. This effect is discussed with special emphasis to recent Car-Parinello calculations which have predicted cage-like silicon structures that enclose a core of several highly coordinated atoms. This structure suggests an improved dielectric sphere model where the core is represented by a smaller sphere with its own dielectric constant εc. It is shown within this model that the observed maximum in polarizability is due to a significant enhancement of the core dielectric constant to a value of εc ≈50. This enhancement is related by means of a simple model to the effect that silicon becomes metallic under high pressure
Collapse
|
35
|
Wirth R, Smoliner C, Spamer C, Marburger C, Schreiber FS, Willschrei HP, Lenzen-Großimlinghaus R, Schäfer R, Volkert D. Do doctors know how much nutrition patients need—a survey from Germany? Eur J Clin Nutr 2014; 68:840-3. [DOI: 10.1038/ejcn.2014.94] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2014] [Revised: 03/21/2014] [Accepted: 04/10/2014] [Indexed: 11/09/2022]
|
36
|
Götz DA, Shayeghi A, Johnston RL, Schwerdtfeger P, Schäfer R. Influence of spin-orbit effects on structures and dielectric properties of neutral lead clusters. J Chem Phys 2014; 140:164313. [DOI: 10.1063/1.4872369] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
37
|
Fisc W, Bergf R, Pla C, Schäfer R, Schopfer P. Accumulation of Storage Materials, Precocious Germination and Development of Desiccation Tolerance During Seed Maturation in Mustard (Sinapis albaL.). ACTA ACUST UNITED AC 2014. [DOI: 10.1111/j.1438-8677.1988.tb00055.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
38
|
Popescu R, Schäfer R, Califano R, Eckert R, Coleman R, Douillard JY, Cervantes A, Casali P, Sessa C, Van Cutsem E, de Vries E, Pavlidis N, Fumasoli K, Wörmann B, Samonigg H, Cascinu S, Cruz Hernández J, Howard A, Ciardiello F, Stahel R, Piccart M. The current and future role of the medical oncologist in the professional care for cancer patients: a position paper by the European Society for Medical Oncology (ESMO). Ann Oncol 2014; 25:9-15. [DOI: 10.1093/annonc/mdt522] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
39
|
Malek A, Gyorffy B, Catapano CV, Schäfer R. Selection of optimal combinations of target genes for therapeutic multi-gene silencing based on miRNA co-regulation. Cancer Gene Ther 2013; 20:326-9. [DOI: 10.1038/cgt.2013.20] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
40
|
Franz M, Weihrauch L, Schäfer R. PALME – Ankunft in der Wirklichkeit. DAS GESUNDHEITSWESEN 2013; 77 Suppl 1:S131-2. [DOI: 10.1055/s-0032-1330026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
41
|
Ulbrich S, Dalyanoglu H, Lichtenberg A, Schipke J, Franz M, Schäfer R, Korbmacher B. Perioperative and Long-Term Development of Anxiety and Depression in CABG Patients. Thorac Cardiovasc Surg 2013; 61:676-81. [DOI: 10.1055/s-0032-1333326] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
42
|
Korbmacher B, Botzet K, Dalyanoglu H, Schipke JD, Franz M, Lichtenberg A, Schäfer R. Anxiety and depression in mitral valve patients: Perioperatively and 6 months after surgery. Thorac Cardiovasc Surg 2013. [DOI: 10.1055/s-0032-1332557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
43
|
Shayeghi A, Johnston RL, Schäfer R. Evaluation of photodissociation spectroscopy as a structure elucidation tool for isolated clusters: a case study of Ag4+ and Au4+. Phys Chem Chem Phys 2013; 15:19715-23. [DOI: 10.1039/c3cp52160e] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
|
44
|
Prochnow D, Höing B, Kleiser R, Lindenberg R, Wittsack HJ, Schäfer R, Franz M, Seitz R. The neural correlates of affect reading: An fMRI study on faces and gestures. Behav Brain Res 2013; 237:270-7. [DOI: 10.1016/j.bbr.2012.08.050] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2012] [Revised: 08/22/2012] [Accepted: 08/29/2012] [Indexed: 12/30/2022]
|
45
|
Franz M, Weihrauch LIV, Schäfer R, Straß C. PALME: Ein bindungsorientiertes Elterntraining für alleinerziehende Mütter – Langzeiteffekte und Weiterentwicklung. Dtsch Med Wochenschr 2012. [DOI: 10.1055/s-0032-1323240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
46
|
Iden S, van Riel WE, Schäfer R, Song JY, Hirose T, Ohno S, Collard JG. Tumor type-dependent function of the par3 polarity protein in skin tumorigenesis. Cancer Cell 2012; 22:389-403. [PMID: 22975380 DOI: 10.1016/j.ccr.2012.08.004] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/26/2011] [Revised: 01/31/2012] [Accepted: 08/06/2012] [Indexed: 12/20/2022]
Abstract
Cell polarization is crucial during development and tissue homeostasis and is regulated by conserved proteins of the Scribble, Crumbs, and Par complexes. In mouse skin tumorigenesis, Par3 deficiency results in reduced papilloma formation and growth. Par3 mediates its tumor-promoting activity through regulation of growth and survival, since Par3 deletion increases apoptosis and reduces growth in vivo and in vitro. In contrast, Par3-deficient mice are predisposed to formation of keratoacanthomas, cutaneous tumors thought to originate from different cellular origin and frequently observed in humans. Par3 expression is reduced in both mouse and human keratoacanthomas, indicating tumor-suppressive properties of Par3. Our results identify a dual function of Par3 in skin cancer, with both pro-oncogenic and tumor-suppressive activity depending on the tumor type.
Collapse
|
47
|
Becker J, Kind S, Buschke N, Schiefelbein S, Schäfer R, Wittmann C. Systems Metabolic Engineering von Corynebacterium glutamicum für die industrielle Bioproduktion. CHEM-ING-TECH 2012. [DOI: 10.1002/cite.201250138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
48
|
Schäfer R, Buschke N, Becker J, Wittmann C. Systembiotechnologie von Corynebacterium glutamicum Nachhaltige Produktion von Lysin aus Hemicellulose. CHEM-ING-TECH 2012. [DOI: 10.1002/cite.201250137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
49
|
Medina Perez P, Schäfer R. 350 Leukemogenic and Noonan Syndrome-related SHP-2 Mutations Promote Oncogenic Transformation. Eur J Cancer 2012. [DOI: 10.1016/s0959-8049(12)71040-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
50
|
Zomer A, Kamermans A, Schäfer R, Ritsma L, Beerling E, de Graaff A, Ellenbroek S, Vrisekoop N, van Rheenen J. 154 In Vivo Tracing of Tumor-initiating Cells in Transgenic Mice. Eur J Cancer 2012. [DOI: 10.1016/s0959-8049(12)70854-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|