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Okumura K, Nishikawa S, Omori T, Ishikawa T, Takamatsu A. Asymmetry in cilia configuration induces hydrodynamic phase locking. Phys Rev E 2018; 97:032411. [PMID: 29776148 DOI: 10.1103/physreve.97.032411] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Indexed: 11/07/2022]
Abstract
To gain insight into the nature of biological synchronization at the microscopic scale, we here investigate the hydrodynamic synchronization between conically rotating objects termed nodal cilia. A mechanical model of three rotating cilia is proposed with consideration of variation in their shapes and geometrical arrangement. We conduct numerical estimations of both near-field and far-field hydrodynamic interactions, and we apply a conventional averaging method for weakly coupled oscillators. In the nonidentical case, the three cilia showed stable locked-phase differences around ±π/2. However, such phase locking also occurred with three identical cilia when allocated in a triangle except for the equilateral triangle. The effects of inhomogeneity in cilia shapes and geometrical arrangement on such asymmetric interaction is discussed to understand the role of biological variation in synchronization via hydrodynamic interactions.
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Kuriyama K, Suzuki M, Kadotani H, Yoshimura A, Yoshinaka H, Yamanaka M, Tsuboi H, Ueda T, Mori A, Kashiwagi K, Yoshida M, Omori T, Kutsumi H, Uchiyama M, Yamada N. 0972 Practical Use Of A Single Channel Sleep EEG For Diagnosis Of Major Depressive Disorder - Multicenter Exploratory Prospective Study (SEEDs) -. Sleep 2018. [DOI: 10.1093/sleep/zsy061.971] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Kuriyama K, Suzuki M, Kadotani H, Yoshinaka H, Yamanaka M, Omori T, Mori A, Tsuboi H, Ueda T, Kashiwagi K, Yoshimura A, Yoshiike T, Takahashi M, Matsuo M, Morita S, Takami M, Fujii Y, Nakabayashi T, Yoshida M, Kutsumi H, Uchiyama M, Yamada N. A research project aimed at developing practical use of sleep EEG for diagnosis of major depressive disorder: multicenter exploratory prospective study. Sleep Med 2017. [DOI: 10.1016/j.sleep.2017.11.508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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29
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Takahashi T, Fujitani K, Omori T, Nishikawa K, Hayashi T, Namikawa T, Otsuji E, Takiguchi S, Doki Y. 5-ALA administration for photodynamic diagnosis of peritoneal metastases due to advanced gastric cancer: A randomised, double-blind, multicentre phase I/II study. Ann Oncol 2017. [DOI: 10.1093/annonc/mdx378.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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30
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Kusama T, Omori T, Saito T, Kise S, Tanaka T, Araki Y, Kainuma R. Ultra-large single crystals by abnormal grain growth. Nat Commun 2017; 8:354. [PMID: 28842571 PMCID: PMC5572478 DOI: 10.1038/s41467-017-00383-0] [Citation(s) in RCA: 88] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Accepted: 06/26/2017] [Indexed: 11/09/2022] Open
Abstract
Producing a single crystal is expensive because of low mass productivity. Therefore, many metallic materials are being used in polycrystalline form, even though material properties are superior in a single crystal. Here we show that an extraordinarily large Cu-Al-Mn single crystal can be obtained by abnormal grain growth (AGG) induced by simple heat treatment with high mass productivity. In AGG, the sub-boundary energy introduced by cyclic heat treatment (CHT) is dominant in the driving pressure, and the grain boundary migration rate is accelerated by repeating the low-temperature CHT due to the increase of the sub-boundary energy. With such treatment, fabrication of single crystal bars 70 cm in length is achieved. This result ensures that the range of applications of shape memory alloys will spread beyond small-sized devices to large-scale components and may enable new applications of single crystals in other metallic and ceramics materials having similar microstructural features.Growing large single crystals cheaply and reliably for structural applications remains challenging. Here, the authors combine accelerated abnormal grain growth and cyclic heat treatments to grow a superelastic shape memory alloy single crystal to 70 cm.
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Omori T, Kurita T, Dohi K, Kumagai N, Ishida M, Fujimoto N, Kitagawa K, Yamada N, Sakuma H, Ito M. P3324Clinical significance of higher extracellular volume in patients with apical and non- apical hypertrophic cardiomyopathy. Eur Heart J 2017. [DOI: 10.1093/eurheartj/ehx504.p3324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Gandini F, Bigelow TS, Becket B, Caughman JB, Cox D, Darbos C, Gassmann T, Henderson MA, Jean O, Kajiwara K, Kobayashi N, Nazare C, Oda Y, Omori T, Purohit D, Rasmussen DA, Ronden DMS, Saibene G, Sakamoto K, Shapiro MA, Takahashi K, Temkin RJ. The EC H&CD Transmission Line for ITER. FUSION SCIENCE AND TECHNOLOGY 2017. [DOI: 10.13182/fst05-38] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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33
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Takahashi K, Kajiwara K, Oda Y, Sakamoto K, Omori T, Henderson M. Development of ITER Equatorial EC Launcher Components Toward the Final Design. FUSION SCIENCE AND TECHNOLOGY 2017. [DOI: 10.13182/fst14-830] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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34
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Miyoshi N, Ohue M, Yasui M, Fujino S, Sugimura K, Tomokuni A, Akita H, Kobayashi S, Takahashi H, Omori T, Miyata H, Fujiwara Y, Yano M. 201P POU5F1 gene expression in colorectal cancer: a novel prognostic marker after curative surgical resection. Ann Oncol 2016. [DOI: 10.1016/s0923-7534(21)00359-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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35
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Okamura A, Nakamura R, Yamagami J, Ishii K, Kawakubo H, Omori T, Takeuchi H, Amagai M, Kitagawa Y. Evaluation of pharyngo‐oesophageal involvement in pemphigus vulgaris and its correlation with disease activity. Br J Dermatol 2016; 176:224-226. [DOI: 10.1111/bjd.14725] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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36
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Imai Y, Omori T, Shimogonya Y, Yamaguchi T, Ishikawa T. Numerical methods for simulating blood flow at macro, micro, and multi scales. J Biomech 2016; 49:2221-2228. [DOI: 10.1016/j.jbiomech.2015.11.047] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2015] [Accepted: 11/07/2015] [Indexed: 02/04/2023]
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37
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Takeishi N, Imai Y, Ishida S, Omori T, Kamm RD, Ishikawa T. Cell adhesion during bullet motion in capillaries. Am J Physiol Heart Circ Physiol 2016; 311:H395-403. [PMID: 27261363 DOI: 10.1152/ajpheart.00241.2016] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/17/2016] [Accepted: 05/31/2016] [Indexed: 01/13/2023]
Abstract
A numerical analysis is presented of cell adhesion in capillaries whose diameter is comparable to or smaller than that of the cell. In contrast to a large number of previous efforts on leukocyte and tumor cell rolling, much is still unknown about cell motion in capillaries. The solid and fluid mechanics of a cell in flow was coupled with a slip bond model of ligand-receptor interactions. When the size of a capillary was reduced, the cell always transitioned to "bullet-like" motion, with a consequent decrease in the velocity of the cell. A state diagram was obtained for various values of capillary diameter and receptor density. We found that bullet motion enables firm adhesion of a cell to the capillary wall even for a weak ligand-receptor binding. We also quantified effects of various parameters, including the dissociation rate constant, the spring constant, and the reactive compliance on the characteristics of cell motion. Our results suggest that even under the interaction between P-selectin glycoprotein ligand-1 (PSGL-1) and P-selectin, which is mainly responsible for leukocyte rolling, a cell is able to show firm adhesion in a small capillary. These findings may help in understanding such phenomena as leukocyte plugging and cancer metastasis.
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Omori T, Imai Y, Kikuchi K, Ishikawa T, Yamaguchi T. Response to the Letter to the Editor "Hemodynamics in the Microcirculation" by A. G. Koutsiaris. Ann Biomed Eng 2016; 44:1323. [DOI: 10.1007/s10439-016-1570-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Accepted: 02/11/2016] [Indexed: 10/22/2022]
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Abstract
Mammalian sperm cells are required to swim over long distances, typically around 1000-fold their own length. They must orient themselves and maintain a swimming motion to reach the ovum, or egg cell. Although the mechanism of long-distance navigation is still unclear, one possible mechanism, rheotaxis, was reported recently. This work investigates the mechanism of the rheotaxis in detail by simulating the motions of a sperm cell in shear flow adjacent to a flat surface. A phase diagram was developed to show the sperm's swimming motion under different shear rates, and for varying flagellum waveform conditions. The results showed that, under shear flow, the sperm is able to hydrodynamically change its swimming direction, allowing it to swim upwards against the flow, which suggests that the upward swimming of sperm cells can be explained using fluid mechanics, and this can then be used to further understand physiology of sperm cell navigation.
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Motomura S, Hara T, Omori T, Kainuma R, Nishida M. Morphological and chemical analysis of bainite in Cu-17Al-11Mn (at.%) alloys by using orthogonal FIB-SEM and double-EDS STEM. Microscopy (Oxf) 2016; 65:243-52. [PMID: 26884617 DOI: 10.1093/jmicro/dfw003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Accepted: 01/14/2016] [Indexed: 11/14/2022] Open
Abstract
In this study, new microscopy techniques were developed for understanding the mechanism for the bainitic transformation in a Cu-17Al-11Mn (at%) alloy. An orthogonally arranged focused ion beam and a scanning electron microscope were employed to observe three-dimensional (3D) morphology of the bainite phase, in addition to compositional analysis by using a scanning transmission electron microscope equipped with a double-detector energy-dispersive X-ray spectrometer system. The 3D morphology of these samples was observed at different aging times and aging temperatures; the results obtained indicated that with increasing aging time and/or aging temperature, the bainite phase at the initial stage of formation exhibits a plate-like shape, which changes to a lenticular form. A habit plane was uniquely determined as ∼{9 3 2} by the combination of 3D image reconstruction and an electron back-scattered diffraction technique. The compositional analysis revealed the spatial distribution of the compositional variation between the bainite and matrix phases in the initial stages of the transformation. In the bainite phase, the Cu concentration was higher, while the concentrations of Al and Mn were lower than those in the surrounding matrix, indicative of the diffusion of the constituent elements with the growth of the bainite phase.
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Yang S, Omori T, Wang C, Liu Y, Nagasako M, Ruan J, Kainuma R, Ishida K, Liu X. A jumping shape memory alloy under heat. Sci Rep 2016; 6:21754. [PMID: 26880700 PMCID: PMC4754943 DOI: 10.1038/srep21754] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Accepted: 01/27/2016] [Indexed: 12/02/2022] Open
Abstract
Shape memory alloys are typical temperature-sensitive metallic functional materials due to superelasticity and shape recovery characteristics. The conventional shape memory effect involves the formation and deformation of thermally induced martensite and its reverse transformation. The shape recovery process usually takes place over a temperature range, showing relatively low temperature-sensitivity. Here we report novel Cu-Al-Fe-Mn shape memory alloys. Their stress-strain and shape recovery behaviors are clearly different from the conventional shape memory alloys. In this study, although the Cu-12.2Al-4.3Fe-6.6Mn and Cu-12.9Al-3.8Fe-5.6Mn alloys possess predominantly L21 parent before deformation, the 2H martensite stress-induced from L21 parent could be retained after unloading. Furthermore, their shape recovery response is extremely temperature-sensitive, in which a giant residual strain of about 9% recovers instantly and completely during heating. At the same time, the phenomenon of the jumping of the sample occurs. It is originated from the instantaneous completion of the reverse transformation of the stabilized 2H martensite. This novel Cu-Al-Fe-Mn shape memory alloys have great potentials as new temperature-sensitive functional materials.
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Ishikawa T, Tanaka T, Imai Y, Omori T, Matsunaga D. Deformation of a micro-torque swimmer. Proc Math Phys Eng Sci 2016; 472:20150604. [PMID: 26997893 PMCID: PMC4786038 DOI: 10.1098/rspa.2015.0604] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2015] [Accepted: 12/15/2015] [Indexed: 11/25/2022] Open
Abstract
The membrane tension of some kinds of ciliates has been suggested to regulate upward and downward swimming velocities under gravity. Despite its biological importance, deformation and membrane tension of a ciliate have not been clarified fully. In this study, we numerically investigated the deformation of a ciliate swimming freely in a fluid otherwise at rest. The cell body was modelled as a capsule with a hyperelastic membrane enclosing a Newtonian fluid. Thrust forces due to the ciliary beat were modelled as torques distributed above the cell body. The effects of membrane elasticity, the aspect ratio of the cell's reference shape, and the density difference between the cell and the surrounding fluid were investigated. The results showed that the cell deformed like a heart shape, when the capillary number was sufficiently large. Under the influence of gravity, the membrane tension at the anterior end decreased in the upward swimming while it increased in the downward swimming. Moreover, gravity-induced deformation caused the cells to move gravitationally downwards or upwards, which resulted in a positive or negative geotaxis-like behaviour with a physical origin. These results are important in understanding the physiology of a ciliate's biological responses to mechanical stimuli.
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Kyoya K, Matsunaga D, Imai Y, Omori T, Ishikawa T. Shape matters: Near-field fluid mechanics dominate the collective motions of ellipsoidal squirmers. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:063027. [PMID: 26764823 DOI: 10.1103/physreve.92.063027] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2015] [Indexed: 06/05/2023]
Abstract
Microswimmers show a variety of collective motions. Despite extensive study, questions remain regarding the role of near-field fluid mechanics in collective motion. In this paper, we describe precisely the Stokes flow around hydrodynamically interacting ellipsoidal squirmers in a monolayer suspension. The results showed that various collective motions, such as ordering, aggregation, and whirls, are dominated by the swimming mode and the aspect ratio. The collective motions are mainly induced by near-field fluid mechanics, despite Stokes flow propagation over a long range. These results emphasize the importance of particle shape in collective motion.
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Motomura S, Soejima Y, Miyoshi T, Hara T, Omori T, Kainuma R, Nishida M. In situheating SEM observation of the bainitic transformation process in Cu–17Al–11Mn (at.%) alloys. Microscopy (Oxf) 2015; 65:159-68. [DOI: 10.1093/jmicro/dfv363] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2015] [Accepted: 10/23/2015] [Indexed: 11/14/2022] Open
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45
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Motomura S, Hara T, Omori T, Kainuma R, Nishida M. B13-P-04The Study of Bainitic Transformation in Cu-Al-Mn Alloy by using Advanced SEM techniques. Microscopy (Oxf) 2015. [DOI: 10.1093/jmicro/dfv239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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46
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Takahashi K, Abe G, Kajiwara K, Oda Y, Isozaki M, Ikeda R, Sakamoto K, Omori T, Henderson M. Design modification of ITER equatorial EC launcher for electron cyclotron heating and current drive optimization. FUSION ENGINEERING AND DESIGN 2015. [DOI: 10.1016/j.fusengdes.2015.04.058] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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47
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Shinozaki T, Shiga K, Asakage T, Katada C, Kaneko K, Oda I, Shimizu Y, Doyama H, Koike T, Takizawa K, Hirao M, Okada H, Yoshii T, Omori T, Shimoda T, Ochiai A, Ishikawa H, Yokoyama T, Yokoyama A, Muto M. 2819 Head and neck cancer that occurred after early esophageal cancer endoscopic resection. Eur J Cancer 2015. [DOI: 10.1016/s0959-8049(16)31562-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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48
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Akagi T, Araki S, Funahashi Y, Honda Y, Miyoshi S, Okugi T, Omori T, Shimizu H, Sakaue K, Takahashi T, Tanaka R, Terunuma N, Uesugi Y, Urakawa J, Washio M, Yoshitama H. Demonstration of the stabilization technique for nonplanar optical resonant cavities utilizing polarization. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2015; 86:043303. [PMID: 25933851 DOI: 10.1063/1.4918653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Based on our previously developed scheme to stabilize nonplanar optical resonant cavities utilizing polarization caused by a geometric phase in electromagnetic waves traveling along a twisted path, we report an application of the technique for a cavity installed in the Accelerator Test Facility, a 1.3-GeV electron beam accelerator at KEK, in which photons are generated by laser-Compton scattering. We successfully achieved a power enhancement of 1200 with 1.4% fluctuation, which means that the optical path length of the cavity has been controlled with a precision of 14 pm under an accelerator environment. In addition, polarization switching utilizing a geometric phase of the nonplanar cavity was demonstrated.
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Albajar F, Aiello G, Alberti S, Arnold F, Avramidis K, Bader M, Batista R, Bertizzolo R, Bonicelli T, Braunmueller F, Brescan C, Bruschi A, von Burg B, Camino K, Carannante G, Casarin V, Castillo A, Cauvard F, Cavalieri C, Cavinato M, Chavan R, Chelis J, Cismondi F, Combescure D, Darbos C, Farina D, Fasel D, Figini L, Gagliardi M, Gandini F, Gantenbein G, Gassmann T, Gessner R, Goodman T, Gracia V, Grossetti G, Heemskerk C, Henderson M, Hermann V, Hogge J, Illy S, Ioannidis Z, Jelonnek J, Jin J, Kasparek W, Koning J, Krause A, Landis J, Latsas G, Li F, Mazzocchi F, Meier A, Moro A, Nousiainen R, Purohit D, Nowak S, Omori T, van Oosterhout J, Pacheco J, Pagonakis I, Platania P, Poli E, Preis A, Ronden D, Rozier Y, Rzesnicki T, Saibene G, Sanchez F, Sartori F, Sauter O, Scherer T, Schlatter C, Schreck S, Serikov A, Siravo U, Sozzi C, Spaeh P, Spichiger A, Strauss D, Takahashi K, Thumm M, Tigelis I, Vaccaro A, Vomvoridis J, Tran M, Weinhorst B. Status of Europe’s contribution to the ITER EC system. EPJ WEB OF CONFERENCES 2015. [DOI: 10.1051/epjconf/20158704004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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50
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Omori T, Imai Y, Kikuchi K, Ishikawa T, Yamaguchi T. Hemodynamics in the microcirculation and in microfluidics. Ann Biomed Eng 2014; 43:238-57. [PMID: 25398331 DOI: 10.1007/s10439-014-1180-8] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Accepted: 11/04/2014] [Indexed: 12/20/2022]
Abstract
Hemodynamics in microcirculation is important for hemorheology and several types of circulatory disease. Although hemodynamics research has a long history, the field continues to expand due to recent advancements in numerical and experimental techniques at the micro-and nano-scales. In this paper, we review recent computational and experimental studies of blood flow in microcirculation and microfluidics. We first focus on the computational studies of red blood cell (RBC) dynamics, from the single cellular level to mesoscopic multiple cellular flows, followed by a review of recent computational adhesion models for white blood cells, platelets, and malaria-infected RBCs, in which the cell adhesion to the vascular wall is essential for cellular function. Recent developments in optical microscopy have enabled the observation of flowing blood cells in microfluidics. Experimental particle image velocimetry and particle tracking velocimetry techniques are described in this article. Advancements in micro total analysis system technologies have facilitated flowing cell separation with microfluidic devices, which can be used for biomedical applications, such as a diagnostic tool for breast cancer or large intestinal tumors. In this paper, cell-separation techniques are reviewed for microfluidic devices, emphasizing recent advances and the potential of this fast-evolving research field in the near future.
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