Aerobic Biodegradation of OCDD by P. Mendocina NSYSU: Effectiveness and Gene Inducement Studies

  The goals of this study were to assess the effectiveness of (1) enhancing octachlorinated dibenzo-p-dioxin (OCDD) biodegradation under aerobic conditions by Pseudomonas mendocina NSYSU (P. Mendocina NSYSU) with the addition of lecithin, and (2) inducing OCDD ring-cleavage genes by pentachlorophenol (PCP) and OCDD addition. P. Mendocina NSYSU could biodegrade OCDD via aerobic cometabolism and lecithin was used as a primary substrate. Approximately 74 and 67% of OCDD biodegradation was observed after 60 days of incubation with lecithin and glucose supplement, respectively. Lecithin was also used as the solubilization additive resulting in OCDD solubilization and enhanced bioavailability of OCDD to P. Mendocina NSYSU. Two intradiol and extradiol ring-cleavage dioxygenase genes (Pmen_0474 and Pmen_2526) were identified from gene analyses. Gene concentration was significantly enhanced after the inducement by PCP and OCDD. Higher gene inducement efficiency was obtained using PCP as the inducer, and Pmen_2526 played a more important role in OCDD biodegradation.

Interpenetration of CH3NH3PbI3 and TiO2 improves perovskite solar cells while TiO2 expansion leads to degradation

Perovskite solar cells have drawn much attention and achieved efficiencies over 22%, but relatively little is known about the long-term stability under photovoltaic operation. So far, stability studies have reported about the importance of degradation of each layer, but little to no consideration has been given to the whole device architecture. We investigated the stability of perovskite solar cells in order to fundamentally understand the mechanism behind efficiency improvement/degradation during device operation. We found that during operation the interfaces of the perovskite and the electron-transport layer (ETL), meso-porous TiO₂, further intermix with each other, which leads to improved power conversion efficiency (PCE) during the initial operation of these solar cells. The operation-induced structural changes are examined directly by X-ray photoelectron spectroscopy (XPS) with in situ low-energy Ar⁺ sputtering and time-of-flight secondary ion mass spectrometry (ToF-SIMS) with C₆₀ sputtering. In addition, this study describes that the primary cause of irreversible degradation during operation is due to the expansion of TiO₂ and ion migration throughout the perovskite solar cell.

[First aid system for trauma: development and status]

With the great progress of the economy, the level of industrialization has been increasing year by year, which leads to an increase in accidental trauma accidents. Chinese annual death of trauma is already more than 400 000, which makes trauma the fifth most common cause of death, following malignant tumor, heart, brain and respiratory diseases. Trauma is the leading cause of the death of young adults. At the same time, trauma has become a serious social problem in peace time. Trauma throws great treats on human health and life. As an important part in the medical and social security system, the emergency of trauma system occupies a very important position in the emergency medical service system. In European countries as well as the United States and also many other developed countries, trauma service system had a long history, and progressed to an advanced stage. However, Chinese trauma service system started late and is still developing. It has not turned into a complete and standardized system yet. This review summarizes the histories and current situations of the development of traumatic first aid system separately in European countries, the United States and our country. Special attentions are paid to the effects of the pre- and in-hospital emergency care. We also further try to explore the Chinese trauma emergency model that adapts to the situations of China and characteristics of different regions of China. Our review also introduces the trauma service system that suits the situations of China proposed by Professor Jiang Baoguo's team in details, taking Chinese conditions into account, they conducted a thematic study and made an expert consensus on pre-hospital emergency treatment of severe trauma, providing a basic routine and guidance of severe trauma treatment for those pre-hospital emergency physicians. They also advised to establish independent trauma disciplines and trauma specialist training systems, and to build the regional trauma care system as well as the standards for graded treatment, thus establishing a multiple disciplinary team (MDT) of severe trauma. In this way, we can reduce the mortality and disability risks of severe trauma, improve the quality of patients' life, and save more lives.

Antioxidant capacity of phytochemicals and their potential effects on oxidative status in animals - A review

Oxidative stress suppresses animal health, performance, and production, subsequently impacting economic feasibility; hence, maintaining and improving oxidative status especially through natural nutrition strategy are essential for normal physiological process in animals. Phytochemicals are naturally occurring antioxidants that could be considered as one of the most promising materials used in animal diets in various forms. In this review, their antioxidant effects on animals are discussed as reflected by improved apparent performance, productivity, and the internal physiological changes. Moreover, the antioxidant actions toward animals further describe a molecular basis to elucidate their underlying mechanisms targeting signal transduction pathways, especially through the antioxidant response element/nuclear factor (erythroid-derived 2)-like 2 transcription system.

Research performance of AACSB accredited institutions in Taiwan: before versus after accreditation

Introduction

More and more universities are receiving accreditation from the Association to Advance Collegiate Schools of Business (AACSB), which is an international association for promoting quality teaching and learning at business schools. To be accredited, the schools are required to meet a number of standards ensuring that certain levels of teaching quality and students’ learning are met. However, there are a variety of points of view espoused in the literature regarding the relationship between research and teaching, some studies have demonstrated that research and teaching these are complementary elements of learning, but others disagree with these findings.

Case description

Unlike past such studies, we focus on analyzing the research performance of accredited schools during the period prior to and after receiving accreditation. The objective is to answer the question as to whether performance has been improved by comparing the same school’s performance before and after accreditation. In this study, four AACSB accredited universities in Taiwan are analyzed, including one teaching oriented and three research oriented universities. Research performance is evaluated by comparing seven citation statistics, the number of papers published, number of citations, average number of citations per paper, average citations per year, h-index (annual), h-index, and g-index.

Discussion and evaluation

The analysis results show that business schools demonstrated enhanced research performance after AACSB accreditation, but in most accredited schools the proportion of faculty members not actively doing research is larger than active ones.

Conclusion

This study shows that the AACSB accreditation has a positive impact on research performance. The findings can be used as a reference for current non-accredited schools whose research goals are to improve their research productivity and quality.

Research impact of general and funded papers

Purpose

– The purpose of this paper is to focus on examining the research impact of papers written with and without funding. Specifically, the citation analysis method is used to compare the general and funded papers published in two leading international conferences, which are ACM SIGIR and ACM SIGKDD.

Design/methodology/approach

– The authors investigate the number of general and funded papers to see whether the number of funded papers is larger than the number of general papers. In addition, the total citations and the number of highly cited papers with and without funding are also compared.

Findings

– The analysis results of ACM SIGIR papers show that in most cases the number of funded papers is larger than the number of general papers. Moreover, the total captions, the average number of citations per paper, and the number of highly cited papers all reveal the superiority of funded papers over general papers. However, the findings are somewhat different for the ACM SIGKDD papers. This may be because ACM SIGIR began much earlier than ACM SIGKDD, which relates to the maturity of the research problems addressed in these two conferences.

Originality/value

– The value of this paper is the first attempt at examining the research impact of general and funded research papers by the citation analysis method. The research impact of other research areas can be further investigated by other analysis methods.

On mining incomplete medical datasets: Ordering imputation and classification

BACKGROUND

To collect medical datasets, it is usually the case that a number of data samples contain some missing values. Performing the data mining task over the incomplete datasets is a difficult problem. In general, missing value imputation can be approached, which aims at providing estimations for missing values by reasoning from the observed data. Consequently, the effectiveness of missing value imputation is heavily dependent on the observed data (or complete data) in the incomplete datasets.

OBJECTIVE

In this paper, the research objective is to perform instance selection to filter out some noisy data (or outliers) from a given (complete) dataset to see its effect on the final imputation result. Specifically, four different processes of combining instance selection and missing value imputation are proposed and compared in terms of data classification.

METHODS

Experiments are conducted based on 11 medical related datasets containing categorical, numerical, and mixed attribute types of data. In addition, missing values for each dataset are introduced into all attributes (the missing data rates are 10%, 20%, 30%, 40%, and 50%). For instance selection and missing value imputation, the DROP3 and k-nearest neighbor imputation methods are employed. On the other hand, the support vector machine (SVM) classifier is used to assess the final classification accuracy of the four different processes.

RESULTS

The experimental results show that the second process by performing instance selection first and imputation second allows the SVM classifiers to outperform the other processes.

CONCLUSIONS

For incomplete medical datasets containing some missing values, it is necessary to perform missing value imputation. In this paper, we demonstrate that instance selection can be used to filter out some noisy data or outliers before the imputation process. In other words, the observed data for missing value imputation may contain some noisy information, which can degrade the quality of the imputation result as well as the classification performance.

Correlation analysis for comparison of the citation impact of journals, magazines, and conferences in computer science

Purpose

– In many research areas, there are a variety of different types of academic publications, including journals, magazines and conferences, which provide outlets for researchers to present their findings. Generally speaking, although there are differences in the reviewing criteria and publication processes of different publication types, in the same research area, there is certainly overlap in terms of the problems addressed and the audience for different publication types. Therefore, the research impacts of different publication types in the same research area should be moderately or highly correlated. The paper aims to discuss these issues.

Design/methodology/approach

– To prove this hypothesis, the authors examine the correlation coefficient of citation impacts for different types of publications, in seven research areas of computer science, from 2000 to 2013. In particular, four related citation statistics are examined for each publication type, which are average citations per paper, average citations per year, average annual increase in individual h-index, and h-index.

Findings

– The analysis results show only a partial correlation in terms of several specific citation measures for different publication types in the same research area. Moreover, the level of correlation of the citation impact between different publication types is different, depending on the research area.

Originality/value

– The contribution of this paper is to investigate whether the research impact of different types of publications in the same area is correlated. The findings can help guide researchers and academics choose the most appropriate publication outlets.

Citation impact analysis of research papers that appear in oral and poster sessions

Purpose

– Conference publications are an important aspect of research activities. There are generally both oral presentations and poster sessions at large international conferences. One can hypothesise that, for the same conferences, the papers presented in oral sessions should have a higher research impact than the papers presented in poster sessions. However, there has been no related study examining the validity of this hypothesis. In other words, the difference of research impact between papers presented orally or during poster sessions has not been discussed in literature. Therefore, the purpose of this paper is to conduct a citation analysis to compare the research impact of papers presented in oral and poster sessions.

Design/methodology/approach

– In this paper, data from three leading conferences in the field of computer vision are examined, namely CVPR (2011 and 2012), ICCV (2011) and ECCV (2012). Several types of citation-related statistics are collected, including the number of highly cited papers (i.e. high number of citations) presented in oral and poster sessions, the total citations of both types of papers, the average citations of oral and poster papers, and the average citations of each frequently cited paper of both types.

Findings

– There are three main findings. First, a larger proportion of highly cited papers are from oral sessions than poster sessions. Second, the average number of citations per paper is larger for those presented in oral sessions than poster sessions. Third, the average number of citations for highly cited papers presented in oral sessions is not necessarily greater than for the ones presented in poster sessions.

Originality/value

– The originality of this paper is that it is the first attempt to examine the differences of citation impacts of conference papers presented in oral and poster sessions. The findings of this study will allow future bibliometrics research to further explore this related issue for longer periods and different fields.

Enhanced anaerobic biodegradation of OCDD-contaminated soils by Pseudomonas mendocina NSYSU: microcosm, pilot-scale, and gene studies

In this study, microcosm and pilot-scale experiments were performed to investigate the capability and effectiveness of Pseudomonas mendocina NSYSU (P. mendocina NSYSU) on the bioremediation of octachlorodibenzo-p-dioxin (OCDD)-contaminated soils. The objectives were to evaluate the (1) characteristics of P. mendocina NSYSU, (2) feasibility of enhancing OCDD biodegradation with the addition of P. mendocina NSYSU and lecithin, and (3) variation in microbial diversity and genes responsible for the dechlorination of OCDD. P. mendocina NSYSU was inhibited when salinity was higher than 7%, and it could biodegrade OCDD under reductive dechlorinating conditions. Lecithin could serve as the solubilization agent causing the enhanced solubilization and dechlorination of OCDD. Up to 71 and 62% of OCDD could be degraded after 65 days of incubation under anaerobic conditions with and without the addition of lecithin, respectively. Decreased OCDD concentrations caused significant increase in microbial diversity. Results from the pilot-scale study show that up to 75% of OCDD could be degraded after a 2.5-month operational period with lecithin addition. Results from the gene analyses show that two genes encoding the extradiol/intradiol ring-cleavage dioxygenase and five genes encoding the hydrolase in P. mendocina NSYSU were identified and played important roles in OCDD degradation.

Reentrant surface anisotropy in the antiferromagnetic/ferromagnetic bilayer Mn/Co/Cu(001)

We investigated the magnetic anisotropy energy of monatomic surface-step atoms in antiferromagnetic/ferromagnetic (AF/FM) epitaxial Mn/Co bilayers grown on vicinal Cu(001) surfaces. The step-induced anisotropy of the Co/Cu(001) films was quenched upon submonolayer Mn deposition, but a reentrant uniaxial surface anisotropy was observed for Mn thickness (tMn) between 1 and 2 monolayers, which disappears for Mn thickness above 2 monolayers. In the Mn/Co/Cu(001) system, Mn films undergo a tMn-dependent transition from FM to AF in the 1-2 Mn monolayer thickness range, which entails the coexistence of FM and AF Mn phases in the film. The observation of a sizeable uniaxial anisotropy exclusively in the Mn-thickness range of coexistence of the FM and AF phases points out the crucial role of the boundaries between FM and AF regions within the Mn film. A symmetry-breaking mechanism of a magnetic type, rather than a purely geometric one, is therefore proposed as the origin of the reentrant anisotropy.

Biodegradation of Polychlorinated Dibenzo--Dioxins by Strain NSYSU

The dioxin-degrading bacterium strain NSYSU (NSYSU strain) has been isolated from dioxin-contaminated soil by selective enrichment techniques. In the present study, the NSYSU strain was investigated for its capability to biodegrade polychlorinated dibenzo--dioxins (PCDDs) and polychlorinated dibenzofurans (PCDFs) under aerobic and anaerobic conditions. High-resolution gas chromatography-mass spectrometry and a chemically activated luciferase gene expression bioassay were performed to determine the presence of dioxin compounds. The results indicate that the NSYSU strain could degrade PCDDs and PCDFs under anaerobic conditions in liquid cultures. The main intermediates of the dechlorination process were identified. The results of the bioreactor test indicate that the NSYSU strain could also degrade PCDDs and PCDFs effectively in soil slurries under aerobic conditions. Results from the bioreactor experiment show that approximately 98 and 97% of octachlorodibenzofuran and OCDD were degraded, respectively. The dioxin concentrations in soil slurry decreased from 5823 to 1198 pg toxic equivalency g, resulting in total dioxin removal of 79%. These first findings suggest that the NSYSU strain has the potential to be an effective tool for the bioremediation of soils contaminated with highly recalcitrant organic compounds.