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Aubert B, Bona M, Karyotakis Y, Lees JP, Poireau V, Prencipe E, Prudent X, Tisserand V, Garra Tico J, Grauges E, Lopez L, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Abrams GS, Battaglia M, Brown DN, Cahn RN, Jacobsen RG, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Ronan MT, Tackmann K, Tanabe T, Hawkes CM, Soni N, Watson AT, Koch H, Schroeder T, Walker D, Asgeirsson DJ, Fulsom BG, Hearty C, Mattison TS, McKenna JA, Barrett M, Khan A, Blinov VE, Bukin AD, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Bondioli M, Curry S, Eschrich I, Kirkby D, Lankford AJ, Lund P, Mandelkern M, Martin EC, Stoker DP, Abachi S, Buchanan C, Gary JW, Liu F, Long O, Shen BC, Vitug GM, Yasin Z, Zhang L, Sharma V, Campagnari C, Hong TM, Kovalskyi D, Mazur MA, Richman JD, Beck TW, Eisner AM, Flacco CJ, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Wilson MG, Winstrom LO, Cheng CH, Doll DA, Echenard B, Fang F, Hitlin DG, Narsky I, Piatenko T, Porter FC, Andreassen R, Mancinelli G, Meadows BT, Mishra K, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Ulmer KA, Wagner SR, Ayad R, Soffer A, Toki WH, Wilson RJ, Altenburg DD, Feltresi E, Hauke A, Jasper H, Karbach M, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Mader WF, Nogowski R, Schubert KR, Schwierz R, Volk A, Bernard D, Bonneaud GR, Latour E, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Franchini P, Luppi E, Negrini M, Petrella A, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Buzzo A, Contri R, Lo Vetere M, Macri MM, Monge MR, Passaggio S, Patrignani C, Robutti E, Santroni A, Tosi S, Chaisanguanthum KS, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Klose V, Lacker HM, Bard DJ, Dauncey PD, Nash JA, Tibbetts M, Behera PK, Chai X, Charles MJ, Mallik U, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Lae CK, Arnaud N, Béquilleux J, D'Orazio A, Davier M, Firmino da Costa J, Grosdidier G, Höcker A, Lepeltier V, Le Diberder F, Lutz AM, Pruvot S, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Clarke CK, George KA, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Flaecher HU, Hopkins DA, Paramesvaran S, Salvatore F, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Schott G, Alwyn KE, Bailey D, Barlow RJ, Chia YM, Edgar CL, Jackson G, Lafferty GD, West TJ, Yi JI, Anderson J, Chen C, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Li X, Salvati E, Saremi S, Cowan R, Dujmic D, Fisher PH, Sciolla G, Spitznagel M, Taylor F, Yamamoto RK, Zhao M, Patel PM, Robertson SH, Lazzaro A, Lombardo V, Palombo F, Bauer JM, Cremaldi L, Godang R, Kroeger R, Sanders DA, Summers DJ, Zhao HW, Simard M, Taras P, Viaud FB, Nicholson H, De Nardo G, Lista L, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, Losecco JM, Wang WF, Benelli G, Corwin LA, Honscheid K, Kagan H, Kass R, Morris JP, Rahimi AM, Regensburger JJ, Sekula SJ, Wong QK, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Lu M, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Voci C, Del Amo Sanchez P, Ben-Haim E, Briand H, Calderini G, Chauveau J, David P, Del Buono L, Hamon O, Leruste P, Ocariz J, Perez A, Prendki J, Sitt S, Gladney L, Biasini M, Covarelli R, Manoni E, Angelini C, Batignani G, Bettarini S, Carpinelli M, Cervelli A, Forti F, Giorgi MA, Lusiani A, Marchiori G, Morganti M, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Del Re D, Di Marco E, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Jackson PD, Li Gioi L, Mazzoni MA, Morganti S, Piredda G, Polci F, Renga F, Voena C, Ebert M, Hartmann T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Escalier M, Esteve L, Ganzhur SF, Hamel de Monchenault G, Kozanecki W, Vasseur G, Yèche C, Zito M, Chen XR, Liu H, Park W, Purohit MV, White RM, Wilson JR, Allen MT, Aston D, Bartoldus R, Bechtle P, Benitez JF, Bertsche K, Cai Y, Cenci R, Coleman JP, Convery MR, Decker FJ, Dingfelder JC, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Ecklund S, Erickson R, Field RC, Fisher A, Fox J, Gabareen AM, Gowdy SJ, Graham MT, Grenier P, Hast C, Innes WR, Iverson R, Kaminski J, Kelsey MH, Kim H, Kim P, Kocian ML, Kulikov A, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, Macfarlane DB, Marsiske H, Messner R, Muller DR, Neal H, Nelson S, Novokhatski A, O'Grady CP, Ofte I, Perazzo A, Perl M, Ratcliff BN, Rivetta C, Roodman A, Salnikov AA, Schindler RH, Schwiening J, Seeman J, Snyder A, Su D, Sullivan MK, Suzuki K, Swain SK, Thompson JM, Va'vra J, Van Winkle D, Wagner AP, Weaver M, West CA, Wienands U, Wisniewski WJ, Wittgen M, Wittmer W, Wright DH, Wulsin HW, Yan Y, Yarritu AK, Yi K, Yocky G, Young CC, Ziegler V, Burchat PR, Edwards AJ, Majewski SA, Miyashita TS, Petersen BA, Wilden L, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Spanier SM, Wogsland BJ, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Drummond BW, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Bosisio L, Cartaro C, Della Ricca G, Lanceri L, Vitale L, Azzolini V, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Bhuyan B, Choi HHF, Hamano K, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Mohanty GB, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Pierini M, Prepost R, Vuosalo CO, Wu SL. Measurement of the e;{+}e;{-}-->bb[over ] Cross Section between sqrt[s]=10.54 and 11.20 GeV. PHYSICAL REVIEW LETTERS 2009; 102:012001. [PMID: 19257181 DOI: 10.1103/physrevlett.102.012001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2008] [Indexed: 05/27/2023]
Abstract
We report e;{+}e;{-}-->bb[over ] cross section measurements by the BABAR experiment performed during an energy scan in the range of 10.54 to 11.20 GeV at the SLAC PEP-II e;{+}e;{-} collider. A total relative error of about 5% is reached in more than 300 center-of-mass energy steps, separated by about 5 MeV. These measurements can be used to derive precise information on the parameters of the Upsilon(10860) and Upsilon(11020) resonances. In particular we show that their widths may be smaller than previously measured.
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Jiao Y, Jin WB, Zhao QL, Zhang GD, Yan Y, Wan J. Transformation of nitrogen and distribution of nitrogen-related bacteria in a polluted urban stream. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2009; 60:1597-1605. [PMID: 19759462 DOI: 10.2166/wst.2009.502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Most researchers focused on either nitrogen species or microbial community for polluted urban stream while ignoring the interaction between them and its effect on nitrogen transformation, which restricted the rational selection of an effective and feasible remediation technology. Taking Buji stream in Shenzhen (China) as target stream, the distribution of nitrogen-related bacteria was investigated by most probable number (MPN) besides analysis of nitrogen species etc. The nitrogen-related bacteria in sediment were 10(2) times richer than those in water. Owing to their faster growth, the MPN of ammonifying bacteria and denitrifying bacteria were 10(5) and 10(2) times higher than those of nitrifying bacteria, respectively. The ammonifying bacteria numbers were significantly related to BOD5 in water, while nitrifying bacteria in sediment correlated well with nitrate in water. Thus, nitrification occurred mainly in sediment surface and was limited by low proportion of nitrifying bacteria. The denitrifying bacteria in sediment had good relationship with BOD5 and nitrite and nitrate in water. Low DO and rich organic compounds were beneficial to denitrification but unfavourable to nitrification. Denitrification was restricted by low nitrite and nitrate concentration. These results could be served as a reference for implementing the remediation scheme of nitrogen polluted urban stream.
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478
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Stewart D, Yan Y, Mutch M, Kodner I, Hunt S, Lowney J, Birnbaum E, Read T, Fleshman J, Dietz D. Predictors of disease-free survival in rectal cancer patients undergoing curative proctectomy. Colorectal Dis 2008; 10:879-86. [PMID: 19037929 DOI: 10.1111/j.1463-1318.2008.01508.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
OBJECTIVE To identify the factors that affect the disease-free survival (DFS) of rectal cancer patients. METHOD Patients from an IRB approved rectal cancer database were reviewed (1990-2000). All patients underwent either abdominoperineal resection or low anterior resection using total mesorectal excision with curative intent. Univariate and multivariate analyses were performed to analyse the factors that influenced DFS. RESULTS A total of 304 patients were reviewed (mean age 64, 52% male). Seventy-seven per cent of patients received neoadjuvant therapy (28.6% short-course radiation therapy (RT), 35.5% long-course RT, 12.5% chemo-RT). The radial margin was involved with tumour in 5.2% of patients (final pathology). The overall survival rate was 85.2% with a mean follow-up time of 33 +/- 26 months. The mean time to death was 34.8 +/- 26.8 months. Local recurrence (+/- distant recurrence) occurred in 4%. Anastomotic leaks occurred in 3.6% of patients. Overall pathologic stage, pathologic T stage, nodal status, the use of adjuvant chemotherapy, tumour fixation, involvement of the radial margin, the presence of mucin, and lymphatic and perineural invasion (PNI) were predictors of DFS by univariate analysis. Of note, anastomotic leaks and obstructing cancers did not influence DFS. Using multivariate analysis with backward elimination, overall pathologic stage, radial margin status, adjuvant chemotherapy, and PNI predicted the DFS. CONCLUSION Major predictors of DFS in rectal cancer are the overall pathologic stage, adjuvant chemotherapy, radial margin status and PNI. Radial margin status may be a marker of tumour aggressiveness and should be considered in deciding on adjuvant chemotherapy.
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479
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Yan Y, Merlin D. Ste20-related proline/alanine-rich kinase: A novel regulator of intestinal inflammation. World J Gastroenterol 2008; 14:6115-21. [PMID: 18985800 PMCID: PMC2761571 DOI: 10.3748/wjg.14.6115] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Recently, inflammatory bowel disease (IBD) has been the subject of considerable research, with increasing attention being paid to the loss of intestinal epithelial cell barrier function as a mechanism of pathogenesis. Ste20-related proline/alanine-rich kinase (SPAK) is involved in regulating barrier function. SPAK is known to interact with inflammation-related kinases (such as p38, JNK, NKCC1, PKCtheta;, WNK and MLCK), and with transcription factor AP-1, resulting in diverse biological phenomena, including cell differentiation, cell transformation and proliferation, cytoskeleton rearrangement, and regulation of chloride transport. This review examines the involvement of Ste20-like kinases and downstream mitogen-activated protein kinases (MAPKs) pathways in the pathogenesis and control of intestinal inflammation. The primary focus will be on the molecular features of intestinal inflammation, with an emphasis on the interaction between SPAK and other molecules, and the effect of these interactions on homeostatic maintenance, cell volume regulation and increased cell permeability in intestinal inflammation.
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480
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Mihaylov IB, Corry P, Yan Y, Ratanatharathorn V, Moros EG. Modeling of carbon fiber couch attenuation properties with a commercial treatment planning system. Med Phys 2008; 35:4982-8. [PMID: 19070232 DOI: 10.1118/1.2982135] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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481
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Yan Y, Dalmasso G, Nguyen HTT, Obertone TS, Charrier-Hisamuddin L, Sitaraman SV, Merlin D. Nuclear factor-kappaB is a critical mediator of Ste20-like proline-/alanine-rich kinase regulation in intestinal inflammation. THE AMERICAN JOURNAL OF PATHOLOGY 2008; 173:1013-28. [PMID: 18787102 PMCID: PMC2543070 DOI: 10.2353/ajpath.2008.080339] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 07/11/2008] [Indexed: 01/04/2023]
Abstract
Inflammatory bowel disease (IBD) is thought to result from commensal flora, aberrant cellular stress, and genetic factors. Here we show that the expression of colonic Ste20-like proline-/alanine-rich kinase (SPAK) that lacks a PAPA box and an F-alpha helix loop is increased in patients with IBD. The same effects were observed in a mouse model of dextran sodium sulfate-induced colitis and in Caco2-BBE cells treated with the pro-inflammatory cytokine tumor necrosis factor (TNF)-alpha. The 5'-flanking region of the SPAK gene contains two transcriptional start sites, three transcription factor Sp1-binding sites, and one transcription factor nuclear factor (NF)-kappaB-binding site, but no TATA elements. The NF-kappaB-binding site was essential for stimulated SPAK promoter activity by TNF-alpha, whereas the Sp1-binding sites were important for basal promoter activity. siRNA-induced knockdown of NF-kappaB, but not of Sp1, reduced TNF-alpha-induced SPAK expression. Nuclear run-on and mRNA decay assays demonstrated that TNF-alpha directly increased SPAK mRNA transcription without affecting SPAK mRNA stability. Furthermore, up-regulation of NF-kappaB expression and demethylation of the CpG islands induced by TNF-alpha also played roles in the up-regulation of SPAK expression. In conclusion, our data indicate that during inflammatory conditions, TNF-alpha is a key regulator of SPAK expression. The development of compounds that can either modulate or disrupt the activity of SPAK-mediated pathways is therefore important for the control and attenuation of downstream pathological responses, particularly in IBD.
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482
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Yan Y, Vasudevan S, Nguyen HTT, Merlin D. Intestinal epithelial CD98: an oligomeric and multifunctional protein. BIOCHIMICA ET BIOPHYSICA ACTA 2008; 1780:1087-92. [PMID: 18625289 PMCID: PMC2602860 DOI: 10.1016/j.bbagen.2008.06.007] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2008] [Revised: 05/12/2008] [Accepted: 06/17/2008] [Indexed: 01/01/2023]
Abstract
The intestinal epithelial cell-surface molecule, CD98 is a type II membrane glycoprotein. Molecular orientation studies have demonstrated that the C-terminal tail of human CD98 (hCD98), which contains a PDZ-binding domain, is extracellular. In intestinal epithelial cells, CD98 is covalently linked to an amino-acid transporter with which it forms a heterodimer. This heterodimer associates with beta(1)-integrin and intercellular adhesion molecular 1 (ICAM-1) to form a macromolecular complex in the basolateral membranes of polarized intestinal epithelial cells. This review focuses on the multifunctional roles of CD98, including involvement in extracellular signaling, adhesion/polarity, and amino-acid transporter expression in intestinal epithelia. A role for CD98 in intestinal inflammation, such as Intestinal Bowel Disease (IBD), is also proposed.
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LoRusso P, Sarker D, Von Hoff D, Tibes R, Derynck M, Ware J, Yan Y, Demetri G, de Bono J, Wagner A. 223 POSTER Pharmacokinetics and pharmacodynamic biomarkers for the pan-PI3K inhibitor GDC-0941: Initial Phase I evaluation. EJC Suppl 2008. [DOI: 10.1016/s1359-6349(08)72155-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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484
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Yan Y, Weng X, Penagaricano J, Ratanatharathorn V. A Universal DICOM Wizard to Tackle Incompatibility Problems in the Process of IMRT and IGRT. Int J Radiat Oncol Biol Phys 2008. [DOI: 10.1016/j.ijrobp.2008.06.342] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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485
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Aubert B, Bona M, Karyotakis Y, Lees JP, Poireau V, Prencipe E, Prudent X, Tisserand V, Garra Tico J, Grauges E, Lopez L, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Abrams GS, Battaglia M, Brown DN, Cahn RN, Jacobsen RG, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Ronan MT, Tackmann K, Tanabe T, Hawkes CM, Soni N, Watson AT, Koch H, Schroeder T, Walker D, Asgeirsson DJ, Fulsom BG, Hearty C, Mattison TS, McKenna JA, Barrett M, Khan A, Blinov VE, Bukin AD, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Bondioli M, Curry S, Eschrich I, Kirkby D, Lankford AJ, Lund P, Mandelkern M, Martin EC, Stoker DP, Abachi S, Buchanan C, Gary JW, Liu F, Long O, Shen BC, Vitug GM, Yasin Z, Zhang L, Sharma V, Campagnari C, Hong TM, Kovalskyi D, Mazur MA, Richman JD, Beck TW, Eisner AM, Flacco CJ, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Wilson MG, Winstrom LO, Cheng CH, Doll DA, Echenard B, Fang F, Hitlin DG, Narsky I, Piatenko T, Porter FC, Andreassen R, Mancinelli G, Meadows BT, Mishra K, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Ulmer KA, Wagner SR, Ayad R, Soffer A, Toki WH, Wilson RJ, Altenburg DD, Feltresi E, Hauke A, Jasper H, Karbach M, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Mader WF, Nogowski R, Schubert KR, Schwierz R, Volk A, Bernard D, Bonneaud GR, Latour E, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Franchini P, Luppi E, Negrini M, Petrella A, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Buzzo A, Contri R, Lo Vetere M, Macri MM, Monge MR, Passaggio S, Patrignani C, Robutti E, Santroni A, Tosi S, Chaisanguanthum KS, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Klose V, Lacker HM, Bard DJ, Dauncey PD, Nash JA, Tibbetts M, Behera PK, Chai X, Charles MJ, Mallik U, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Lae CK, Arnaud N, Béquilleux J, D'Orazio A, Davier M, da Costa JF, Grosdidier G, Höcker A, Lepeltier V, Le Diberder F, Lutz AM, Pruvot S, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Clarke CK, George KA, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Flaecher HU, Hopkins DA, Paramesvaran S, Salvatore F, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Schott G, Alwyn KE, Bailey D, Barlow RJ, Chia YM, Edgar CL, Jackson G, Lafferty GD, West TJ, Yi JI, Anderson J, Chen C, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Li X, Salvati E, Saremi S, Cowan R, Dujmic D, Fisher PH, Sciolla G, Spitznagel M, Taylor F, Yamamoto RK, Zhao M, Patel PM, Robertson SH, Lazzaro A, Lombardo V, Palombo F, Bauer JM, Cremaldi L, Godang R, Kroeger R, Sanders DA, Summers DJ, Zhao HW, Simard M, Taras P, Viaud FB, Nicholson H, De Nardo G, Lista L, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Benelli G, Corwin LA, Honscheid K, Kagan H, Kass R, Morris JP, Rahimi AM, Regensburger JJ, Sekula SJ, Wong QK, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Lu M, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Voci C, del Amo Sanchez P, Ben-Haim E, Briand H, Calderini G, Chauveau J, David P, Del Buono L, Hamon O, Leruste P, Ocariz J, Perez A, Prendki J, Sitt S, Gladney L, Biasini M, Covarelli R, Manoni E, Angelini C, Batignani G, Bettarini S, Carpinelli M, Cervelli A, Forti F, Giorgi MA, Lusiani A, Marchiori G, Morganti M, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, del Re D, Di Marco E, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Jackson PD, Gioi LL, Mazzoni MA, Morganti S, Piredda G, Polci F, Renga F, Voena C, Ebert M, Hartmann T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Escalier M, Esteve L, Ganzhur SF, de Monchenault GH, Kozanecki W, Vasseur G, Yèche C, Zito M, Chen XR, Liu H, Park W, Purohit MV, White RM, Wilson JR, Allen MT, Aston D, Bartoldus R, Bechtle P, Benitez JF, Bertsche K, Cai Y, Cenci R, Coleman JP, Convery MR, Decker FJ, Dingfelder JC, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Ecklund S, Erickson R, Field RC, Fisher A, Fox J, Gabareen AM, Gowdy SJ, Graham MT, Grenier P, Hast C, Innes WR, Iverson R, Kaminski J, Kelsey MH, Kim H, Kim P, Kocian ML, Kulikov A, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, Macfarlane DB, Marsiske H, Messner R, Muller DR, Neal H, Nelson S, Novokhatski A, O'Grady CP, Ofte I, Perazzo A, Perl M, Ratcliff BN, Rivetta C, Roodman A, Salnikov AA, Schindler RH, Schwiening J, Seeman J, Snyder A, Su D, Sullivan MK, Suzuki K, Swain SK, Thompson JM, Va'vra J, Van Winkle D, Wagner AP, Weaver M, West CA, Wienands U, Wisniewski WJ, Wittgen M, Wittmer W, Wright DH, Wulsin HW, Yan Y, Yarritu AK, Yi K, Yocky G, Young CC, Ziegler V, Burchat PR, Edwards AJ, Majewski SA, Miyashita TS, Petersen BA, Wilden L, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Spanier SM, Wogsland BJ, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Drummond BW, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Bosisio L, Cartaro C, Della Ricca G, Lanceri L, Vitale L, Azzolini V, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Bhuyan B, Choi HHF, Hamano K, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Mohanty GB, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Pierini M, Prepost R, Vuosalo CO, Wu SL. Observation of the bottomonium ground state in the decay Upsilon(3S)-->gammaetab. PHYSICAL REVIEW LETTERS 2008; 101:071801. [PMID: 18764521 DOI: 10.1103/physrevlett.101.071801] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2008] [Indexed: 05/26/2023]
Abstract
We report the results of a search for the bottomonium ground state etab(1S) in the photon energy spectrum with a sample of (109+/-1) million of Upsilon(3S) recorded at the Upsilon(3S) energy with the BABAR detector at the PEP-II B factory at SLAC. We observe a peak in the photon energy spectrum at Egamma=921.2(-2.8)+2.1(stat)+/-2.4(syst) MeV with a significance of 10 standard deviations. We interpret the observed peak as being due to monochromatic photons from the radiative transition Upsilon(3S)-->gammaetab(1S). This photon energy corresponds to an etab(1S) mass of 9388.9(-2.3)+3.1(stat)+/-2.7(syst) MeV/c2. The hyperfine Upsilon(1S)-etab(1S) mass splitting is 71.4(-3.1)+2.3(stat)+/-2.7(syst) MeV/c2. The branching fraction for this radiative Upsilon(3S) decay is estimated to be [4.8+/-0.5(stat)+/-1.2(syst)]x10(-4).
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486
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Gu H, Chen X, Chen K, Yan Y, Jing H, Chen X, Shao C, Ye G. Evaluation of diagnostic criteria for atopic dermatitis: validity of the criteria of Williams et al. in a hospital-based setting. Br J Dermatol 2008. [DOI: 10.1111/j.1365-2133.2001.04379.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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487
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Altman AM, Chiu ES, Bai X, Yan Y, Song YH, Newsome RE, Alt EU. Human adipose-derived stem cells adhere to acellular dermal matrix. Aesthetic Plast Surg 2008; 32:698-9. [PMID: 18414936 DOI: 10.1007/s00266-008-9159-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2008] [Accepted: 01/09/2008] [Indexed: 12/18/2022]
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488
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Yan Y, Scott DJ, Wilkinson TN, Ji J, Tregear GW, Bathgate RAD. Identification of the N-linked glycosylation sites of the human relaxin receptor and effect of glycosylation on receptor function. Biochemistry 2008; 47:6953-68. [PMID: 18533687 DOI: 10.1021/bi800535b] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The relaxin receptor, RXFP1, is a member of the leucine-rich repeat-containing G-protein-coupled receptor (LGR) family. These receptors are characterized by a large extracellular ectodomain containing leucine-rich repeats which contain the primary ligand binding site. RXFP1 contains six putative Asn-linked glycosylation sites in the ectodomain at positions Asn-14, Asn-105, Asn-242, Asn-250, Asn-303, and Asn-346, which are highly conserved across species. N-Linked glycosylation is the most common post-translational modification of G-protein-coupled receptors, although its role in modulating receptor function differs. We herein investigate the actual N-linked glycosylation status of RXFP1 and the functional ramifications of these post-translational modifications. Site-directed mutagenesis was utilized to generate single- or multiple-glycosylation site mutants of FLAG-tagged human RXFP1 which were then transiently expressed in HEK-293T cells. Glycosylation status was analyzed by immunoprecipitation and Western blot and receptor function analyzed with an anti-FLAG ELISA, (33)P-H2 relaxin competition binding, and cAMP activity measurement. All of the potential N-glycosylation sites of RXFP1 were utilized in HEK-293T cells, and importantly, disruption of glycosylation at individual or combinations of double and triple sites had little effect on relaxin binding. However, combinations of glycosylation sites were required for cell surface expression and cAMP signaling. In particular, N-glycosylation at Asn-303 of RXFP1 was required for optimal intracellular cAMP signaling. Hence, as is the case for other LGR family members, N-glycosylation is essential for the transport of the receptor to the cell surface. Additionally, it is likely that glycosylation is also essential for the conformational changes required for G-protein coupling and subsequent cAMP signaling.
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489
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Yan Y, Weng X, Ratanatharathorn V. SU-GG-J-08: A Dedicated Image Pumping Utility for BrainLAB ExacTrac IGRT System. Med Phys 2008. [DOI: 10.1118/1.2961565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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490
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Weng X, Yan Y, Ratanatharathorn V. SU-GG-J-36: Application of Gafchromic XR-RV2 Film for Small Animal Irradiation Dosimetry. Med Phys 2008. [DOI: 10.1118/1.2961594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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491
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Yan Y, Weng X, Ratanatharathorn V. SU-GG-J-09: A DICOM Screen Dumper That Links Tomotherapy Units and R&V Systems. Med Phys 2008. [DOI: 10.1118/1.2961566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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492
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Bae K, Watkins-Bruner D, Yan Y, Coyne J, Movsas B. Evaluation of missing quality of life assessments patterns in radiation therapy oncology group (RTOG) trials. J Clin Oncol 2008. [DOI: 10.1200/jco.2008.26.15_suppl.20510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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493
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Figueiredo-Pina CG, Yan Y, Neville A, Fisher J. Understanding the differences between the wear of metal-on-metal and ceramic-on-metal total hip replacements. Proc Inst Mech Eng H 2008; 222:285-96. [DOI: 10.1243/09544119jeim363] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Hip simulator studies have been carried out extensively to understand and test artificial hip implants in vitro as an efficient alternative to obtaining long-term results in vivo. Recent studies have shown that a ceramic-on-metal material combination lowers the wear by up to 100 times in comparison with a typical metal-on-metal design. The reason for this reduction remains unclear and for this reason this study has undertaken simple tribometer tests to understand the fundamental material loss mechanisms in two material combinations: metal-on-metal and ceramic-on-ceramic. A simple-configuration reciprocating pin-on-plate wear study was performed under open-circuit potential (OCP) and with applied cathodic protection (CP) in a serum solution using two tribological couples: firstly, cobalt—chromium (Co—Cr) pins against Co—Cr plates; secondly, Co—Cr pins against alumina (Al2O3) plates. The pin and plate surfaces prior to and after testing were examined by profilometry and scanning electron microscopy. The results showed a marked reduction in wear when CP was applied, indicating that total material degradation under the OCP condition was attributed to corrosion processes. The substitution of the Co—Cr pin with an Al2O3 plate also resulted in a dramatic reduction in wear, probably due to the reduction in the corrosion—wear interactions between the tribological pair.
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494
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Lu Z, Li CM, Qiao Y, Yan Y, Yang X. Effect of inhaled formaldehyde on learning and memory of mice. INDOOR AIR 2008; 18:77-83. [PMID: 18333987 DOI: 10.1111/j.1600-0668.2008.00524.x] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
UNLABELLED In this study, we investigated the effect of inhaled formaldehyde on learning and memory capacity. After exposure to 0 (control), 1 and 3 mg/m(3) of gaseous formaldehyde respectively, the behavior of mice in a Morris water maze, the expression of NR1, NR2B mRNA and oxidative damage levels in mice brain were analyzed. The water maze performance, the activities of dismutase superoxide (SOD) and levels of glutathione (GSH) decreased significantly in 3 mg/m(3) group (P < 0.01, compared with control group); while malondialdehyde (MDA) contents and expression of NR1 and NR2B genes increased significantly after exposure to 3 mg/m(3) of gaseous formaldehyde (P < 0.05, <0.01, <0.01, compared with control group). These findings indicate that inhaled formaldehyde negatively affects learning and memory at 3 mg/m(3) of gaseous formaldehyde but not at lower levels. Oxidative stress-induced neuron damages in the brain may be the possible mechanism for these effects. PRACTICAL IMPLICATIONS This study indicates that inhaled formaldehyde starts to negatively affect learning and memory at a middle concentration of formaldehyde without interference of other indoor air pollutants. Oxidative damage, and the alteration of NMDA receptor expression, which were induced by formaldehyde inhalation, may be the possible mechanism for gaseous formaldehyde-induced neurotoxicity.
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495
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Dalmasso G, Nguyen HTT, Yan Y, Charrier‐Hisamuddin L, Sitaraman SV. Sodium butyrate increases di/tripeptide transporter PepT1 expression and function. FASEB J 2008. [DOI: 10.1096/fasebj.22.1_supplement.1183.3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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496
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Nguyen HTT, Yan Y, Dalmasso G, Charrier‐Hisamuddin L, Sitaraman SV. Ecto‐phosphorylation of CD98 regulates lymphocytes‐epithelia interactions. FASEB J 2008. [DOI: 10.1096/fasebj.22.1_supplement.1183.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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497
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Yan Y, Dalmasso G, Charrier‐Hisamuddin L, Nguyen H, Sitaraman SV, Merlin D. Human Intestinal Ste20‐related Proline/alanine Kinase (SPAK): A Novel Regulator of Intestinal Inflammation. FASEB J 2008. [DOI: 10.1096/fasebj.22.1_supplement.1183.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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498
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Dalmasso G, Charrier-Hisamuddin L, Nguyen HTT, Yan Y, Sitaraman S, Merlin D. PepT1-mediated tripeptide KPV uptake reduces intestinal inflammation. Gastroenterology 2008; 134:166-78. [PMID: 18061177 PMCID: PMC2431115 DOI: 10.1053/j.gastro.2007.10.026] [Citation(s) in RCA: 85] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/18/2007] [Accepted: 10/04/2007] [Indexed: 01/11/2023]
Abstract
BACKGROUND & AIMS KPV is a tripeptide (Lys-Pro-Val), which possesses anti-inflammatory properties; however, its mechanisms of action still remain unknown. PepT1 is a di/tripeptide transporter normally expressed in the small intestine and induced in colon during inflammatory bowel disease (IBD). The aim of this study was to 1) investigate whether the KPV anti-inflammatory effect is PepT1-mediated in intestinal epithelian and immune cells, and 2) examine the anti-inflammatory effects in two models of mice colitis. METHODS Human intestinal epithelial cells Caco2-BBE, HT29-Cl.19A, and human T cells (Jurkat) were stimulated with pro-inflammatory cytokines in the present or absence of KPV. KPV anti-inflammatory effect was assessed using a NF-kappaB luciferase gene reporter, Western blot, real-time RT-PCR and ELISA. Uptake experiments were performed using cold KPV as a competitor for PepT1 radiolabelled substrate or using [(3)H]KPV to determine kinetic characteristics of KPV uptake. Anti-inflammatory effect of KPV was also investigated in DSS- and TNBS-induced colitis in mice. KPV was added to drinking water and inflammation was assessed at the histologic level and by proinflammatory cytokine mRNA expression. RESULTS Nanomolar concentrations of KPV inhibit the activation of NF-kappaB and MAP kinase inflammatory signaling pathways, and reduce pro-inflammatory cytokine secretion. We found that KPV acts via PepT1 expressed in immune and intestinal epithelial cells. Furthermore, oral administration of KPV reduces the incidence of DSS- and TNBS-induced colitis indicated by a decrease in pro-inflammatory cytokine expression. CONCLUSIONS This study indicates tht KPV is transported into cells by PepT1 and might be a new therapeutic agent for IBD.
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499
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Luo W, Zhang F, Yan Y, Wu X, Liu Y, Bai W, Zhao Q, Wang H, Xu Z. Immunological properties of a fusion protein containing nucleocapsid protein and glycoprotein Gn of Hantaan virus. Acta Virol 2008; 52:243-249. [PMID: 19143481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Escherichia coli and the baculovirus Bac-to-Bac system were used to express chimeric gene GnS0.7 consisting of glycoprotein Gn gene and the 0.7 kb fragment of S genome segment carrying nucleoprotein (N) gene of Hantaan virus (HTNV). The expressed fusion protein GnN0.7 was recognized by monoclonal antibodies (MAbs) to HTNV Gn glycoprotein and N protein, respectively. Its molecular mass as determined by Western blot analysis corresponded to the predicted value. The mice immunized with insect Spodoptera frugiperda (Sf9) cells transfected with recombinant baculovirus carrying GnS0.7 gene, produced serum antibodies with titer up to 3,200 as assayed by immunofluorescence. Moreover, immunized mice showed positive proliferation index for splenocytes stimulated with HTNV Gn and N, respectively. These results indicated that insect Sf9 cells infected with the recombinant baculovirus expressed a fully biologically active fusion protein that elicited not only humoral but also cellular immune response in mice. Hence, this protein may be used as a genetically engineered subunit HTNV vaccine representing efficacious and safe alternative to traditional vaccines.
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500
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Dubberke ER, Reske KA, Yan Y, Olsen MA, McDonald LC, Fraser VJ. Clostridium difficile--Associated Disease in a Setting of Endemicity: Identification of Novel Risk Factors. Clin Infect Dis 2007; 45:1543-9. [DOI: 10.1086/523582] [Citation(s) in RCA: 205] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
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