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Farahani MD, Honarparvar B, Albericio F, Maguire GEM, Govender T, Arvidsson PI, Kruger HG. Proline N-oxides: modulators of the 3D conformation of linear peptides through “NO-turns”. Org Biomol Chem 2014; 12:4479-90. [DOI: 10.1039/c4ob00433g] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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52
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Bhatt N, Bhatt P, Govender T, Kruger HG, Maguire GEM. Crystal structure of 2-isopropyl-(3,5-dimethyl-1,1-dioxo-2H-1,2,6- thiadiazine-4-yl)-benzoate, C15H18N2O4S. Z KRIST-NEW CRYST ST 2014. [DOI: 10.1515/ncrs-2014-0034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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53
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Sosibo SC, Farahani MD, Govender T, Kruger HG, Maguire GEM. Crystal structure of N-(2,6-diisopropylphenyl)-1,2,3,4-tetrahydroisoquinoline-3-carboxamide, C22H28N2O. Z KRIST-NEW CRYST ST 2014. [DOI: 10.1515/ncrs-2014-0005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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54
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Thakar AS, Friedrich HB, Joshi KT, Maguire GEM. Crystal structure of 2-(3-chloro-phenyl)-5-methyl-4-[1-(5-methyl-4-ptolyl- thiazol-2-ylimino)-ethyl]-2,4-dihydro-pyrazol-3-one, C23H-ClN4OS. Z KRIST-NEW CRYST ST 2013. [DOI: 10.1515/ncrs.2013.0231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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55
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Bhatt N, Bhatt P, Nimvat K, Govender T, Kruger HG, Maguire GEM. Crystal structure of bis(tert.-butylaminium) 4-(2-carboxylatophenyl)-3,5-dimethyl-4H-1,2,6-thiadiazin-4-ide 1,1-dioxide , C20H34N4O4S. Z KRIST-NEW CRYST ST 2013. [DOI: 10.1515/ncrs.2013.0227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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56
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Pawar S, Bhatt P, Govender T, Kruger HG, Maguire GEM. Crystal structure of (S)-tert-butyl 3-carbamothioyl-3,4-dihydroisoquinoline- 2(1H)-carboxylate, C63H86N8O9S4. Z KRIST-NEW CRYST ST 2013. [DOI: 10.1515/ncrs.2013.0205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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57
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Thakar AS, Friedrich HB, Joshi KT, Maguire GEM. Crystal structure of 5-methyl-4-[1-(5-methyl-4-phenyl-thiazol-2-ylamino)- ethylidene]-2-p-tolyl-2,4-dihydro-pyrazol-3-one, C23H22N4OS. Z KRIST-NEW CRYST ST 2013. [DOI: 10.1515/ncrs.2013.0216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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58
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Cele ZED, Bhatt P, Govender T, Kruger HG, Maguire GEM. Crystal structure of (S)-N-benzyl-1,2,3,4-tetrahydroisoquinoline-3-carboxamide, C17H20N2O2. Z KRIST-NEW CRYST ST 2013. [DOI: 10.1524/ncrs.2013.0204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract C17H20N2O2, orthorhombic, P212121 (no. 19), a = 7.1759(1) Å, b = 13.2258(2) Å, c = 15.6553(3) Å, V = 1485.8 Å3, Z = 4, Rgt(F) = 0.0283, wRref(F2) = 0.0797, T = 173 K.
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Honarparvar B, Govender T, Maguire GEM, Soliman MES, Kruger HG. Integrated Approach to Structure-Based Enzymatic Drug Design: Molecular Modeling, Spectroscopy, and Experimental Bioactivity. Chem Rev 2013; 114:493-537. [DOI: 10.1021/cr300314q] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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60
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Chelopo MP, Pawar SA, Sokhela MK, Govender T, Kruger HG, Maguire GEM. Anticancer activity of ruthenium(II) arene complexes bearing 1,2,3,4-tetrahydroisoquinoline amino alcohol ligands. Eur J Med Chem 2013; 66:407-14. [PMID: 23827181 DOI: 10.1016/j.ejmech.2013.05.048] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2013] [Revised: 05/03/2013] [Accepted: 05/30/2013] [Indexed: 10/26/2022]
Abstract
Ruthenium complexes offer potential reduced toxicity compared to current platinum anticancer drugs. 1,2,3,4-tetrahydrisoquinoline amino alcohol ligands were synthesised, characterised and coordinated to an organometallic Ru(II) centre. These complexes were evaluated for activity against the cancer cell lines MCF-7, A549 and MDA-MB-231 as well as for toxicity in the normal cell line MDBK. They were observed to be moderately active against only the MCF-7 cells with the best IC₅₀ value of 34 μM for the cis-diastereomeric complex C4. They also displayed excellent selectivity by being relatively inactive against the normal MDBK cell line with SI values ranging from 2.3 to 7.4.
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Venugopala KN, Nayak SK, Govender T, Kruger HG, Maguire GEM. {2-[(1,3-Benzo-thia-zol-2-yl)meth-oxy]-5-fluoro-phen-yl}(4-chloro-phen-yl)methanone. Acta Crystallogr Sect E Struct Rep Online 2013; 69:o1007-8. [PMID: 24046594 PMCID: PMC3772451 DOI: 10.1107/s1600536813014621] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2013] [Accepted: 05/27/2013] [Indexed: 11/25/2022]
Abstract
The asymmetric unit of the title compound, C21H13ClFNO2S, contains two independent molecules with similar conformations. In the molecules, the thiazole ring is essentially planar [maximum atomic deviations = 0.014 (4) and 0.023 (5) Å] and is oriented with respect to the fluorophenyl ring and chlorophenyl rings at 9.96 (18) and 70.39 (18)° in one molecule and at 7.50 (18) and 68.43 (18)° in the other; the dihedral angles between the fluorophenyl and chlorophenyl rings are 64.9 (2) and 64.6 (2)°, respectively. Intermolecular C—H⋯O and C—H⋯F hydrogen bonds stabilize the three-dimensional supramolecular architecture. Weak C—H⋯π and π–π interactions [centroid–centroid distance = 3.877 (3) Å] lead to a criss-cross molecular packing along the c axis.
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62
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Nayak SK, Venugopala KN, Govender T, Kruger HG, Maguire GEM. [2-(1,3-Benzothia-zol-2-ylmeth-oxy)-5-bromo-phen-yl](4-chloro-phen-yl)methanone. Acta Crystallogr Sect E Struct Rep Online 2013; 69:o70. [PMID: 23476451 PMCID: PMC3588233 DOI: 10.1107/s1600536812049756] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2012] [Accepted: 12/04/2012] [Indexed: 06/01/2023]
Abstract
In the title compound, C21H13BrClNO2S, the dihedral angle between the planes of the benzothia-zole and chloro-phenyl-methanone groups is 71.34 (6)°. In the crystal, weak C-H⋯N hydrogen bonds lead to dimer formation, whereas Br⋯Cl short contacts [3.4966 (11) Å] form infinite chains along the a-axis direction. Further, the C-H⋯O, C-H⋯π and π-π [centroid-centroid distance = 3.865 (2) Å] inter-actions stabilize the three-dimensional network.
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63
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Pawar SA, Jabgunde AM, Petzold K, Maguire GEM, Dhavale DD, Kruger HG, Govender T. Investigation and folding pattern of l-ido and d-gluco peptides by EASY ROESY NMR and X-ray. RSC Adv 2013. [DOI: 10.1039/c3ra44542a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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64
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Bhatt N, Bhatt P, Nimavat K, Govender T, Kruger HG, Maguire GEM. Methyl 2-(2,3,5-trimethyl-1,1-dioxo-2 H-1λ 6,2,6-thiadiazin-4-yl)benzoate. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o3360. [PMID: 23476194 PMCID: PMC3588958 DOI: 10.1107/s1600536812046375] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2012] [Accepted: 11/09/2012] [Indexed: 12/03/2022]
Abstract
There are two molecules, A and B, in the asymmetric unit of the title compound, C14H16N2O4S, which is the first example reported in this family of compounds in which the Nsp3 atom of the thiadiazine ring is methylated. The thiadiazine rings adopt shallow envelope conformations, with the S atoms displaced by 0.319 (12) and 0.182 (12) Å from the mean planes of the other ring atoms in molecules A and B, respectively. The dihedral angles between the thiadiazine mean planes (excluding S) and the attached benzene rings are 86.8 (3) and 86.7 (3)° for molecules A and B, respectively.
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65
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Karpoormath R, Albericio F, Govender T, Maguire GEM, Kruger HG. Synthesis and NMR elucidation of pentacycloundecane-derived hydroxy acid peptides as potential anti-HIV-1 agents. Struct Chem 2012. [DOI: 10.1007/s11224-012-0164-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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66
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Ahmed SM, Kruger HG, Govender T, Maguire GEM, Sayed Y, Ibrahim MAA, Naicker P, Soliman MES. Comparison of the Molecular Dynamics and Calculated Binding Free Energies for Nine FDA-Approved HIV-1 PR Drugs Against Subtype B and C-SA HIV PR. Chem Biol Drug Des 2012; 81:208-18. [DOI: 10.1111/cbdd.12063] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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67
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Bhatt N, Bhatt P, Govender T, Kruger HG, Maguire GEM. 2-(3,5-Dimethyl-1,1-dioxo-2 H-1λ 6,2,6-thiadiazin-4-yl)benzoic acid. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o2859. [PMID: 23125661 PMCID: PMC3470217 DOI: 10.1107/s1600536812037026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2012] [Accepted: 08/27/2012] [Indexed: 05/26/2023]
Abstract
In the title molecule, C12H12N2O4S, the S atom of the thiadiazine ring deviates by 0.5104 (4) Å from the mean plane of the other five atoms [largest deviation = 0.0623 (15) Å] giving a slightly distorted sofa conformation. The carboxy H atom was refined as disordered over two sets of sites with refined occupancies of 0.58 (2) and 0.48 (2). This corresponds to rotational disorder of the C=O and O—H groups about the attached C—C bond. In the crystal, O—H⋯O and N—H⋯O hydrogen bonds connect the molecules into chains along [110].
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68
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Venugopala KN, Nayak SK, Govender T, Kruger HG, Maguire GEM. (2-(Benzo[d]thia-zol-2yl-meth-oxy)-5-chloro-phen-yl)(phen-yl)methanone. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o3125. [PMID: 23284450 PMCID: PMC3515230 DOI: 10.1107/s1600536812041888] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2012] [Accepted: 10/06/2012] [Indexed: 11/10/2022]
Abstract
In the title compound, C21H14ClNO2S, the dihedral angle between the benzothiazole and diphenyl methanone groups is 68.6 (2)°. The crystal structure consists of dimeric units generated by C—H⋯N bonds, further linked by C—H⋯O bonds and C—H⋯π and π–π interactions [centroid–centroiddistance = 3.856 (2) Å], which lead to a criss-cross assembly parallel to (001).
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69
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Pawar S, Govender T, Kruger HG, Maguire GEM. ( S)-4- tert-Butyl-2-(1,2,3,4-tetrahydroisoquinolin-3-yl)-1,3-thiazole. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o2487. [PMID: 22904929 PMCID: PMC3414942 DOI: 10.1107/s160053681203173x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2012] [Accepted: 07/11/2012] [Indexed: 05/26/2023]
Abstract
In the title compound, C16H20N2S, a potential tetrahydroisoquinoline (TIQ) thiazole ligand, the N-containing six-membered ring of the TIQ unit adopts a half-chair conformation. There are four molecules in the asymmetric unit. No classical hydrogen bonds or π–π interactions were found in the crystal structure.
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70
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Makatini MM, Petzold K, Arvidsson PI, Honarparvar B, Govender T, Maguire GEM, Parboosing R, Sayed Y, Soliman MES, Kruger HG. Synthesis, screening and computational investigation of pentacycloundecane-peptoids as potent CSA-HIV PR inhibitors. Eur J Med Chem 2012; 57:459-67. [PMID: 22867528 DOI: 10.1016/j.ejmech.2012.06.019] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Revised: 06/05/2012] [Accepted: 06/09/2012] [Indexed: 10/28/2022]
Abstract
Herein, we present the first pentacycloundecane (PCU) diol peptoid derived HIV protease inhibitors with IC(50) values ranging from 6.5 to 0.075 μM. Five derivatives were synthesized in an attempt to understand the structure activity relationship of this class of compounds for HIV protease inhibition. NMR spectroscopy (new Efficient Adiabatic Symmetrized Rotating Overhauser Effect Spectroscopy, EASY-ROESY) was employed to determine the predominant conformation of the active compound. In this study docking studies and MD simulations provided insight into the binding theme of this class of peptoid inhibitors to the CSA-HIV PR active site. Conserved and stable hydrogen bonding between the hydroxyl groups of the inhibitors and the active site Asp25/Asp25' residues were observed from the docking and along the MD trajectories.
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71
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Bhatt N, Bhatt P, Vyas KB, Nimavat K, Govender T, Kruger HG, Maguire GEM. Ethyl 2-(3,5-dimethyl-1,1-dioxo-2 H-1λ 6,2,6-thiadiazin-4-yl)benzoate. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o2160. [PMID: 22798832 PMCID: PMC3393967 DOI: 10.1107/s1600536812024907] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2012] [Accepted: 05/31/2012] [Indexed: 11/10/2022]
Abstract
In the title compound, C14H16N2O4S, the thiadiazine ring is in a half-boat conformation. The aromatic ring deviates from the plane of this moiety at an angle of 74.6 (2)°. The structure displays intermolecular N—H⋯O hydrogen bonding [N⋯O = 2.8157 (16) Å], creating ribbons along the [010] axis. There are also weak C—H⋯O interactions in the crystal but no π–π stacking.
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Honarparvar B, Makatini MM, Pawar SA, Petzold K, Soliman MES, Arvidsson PI, Sayed Y, Govender T, Maguire GEM, Kruger HG. Inside Cover: Pentacycloundecane-diol-Based HIV-1 Protease Inhibitors: Biological Screening, 2 D NMR, and Molecular Simulation Studies (ChemMedChem 6/2012). ChemMedChem 2012. [DOI: 10.1002/cmdc.201290025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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73
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Naicker T, Arvidsson PI, Kruger HG, Maguire GEM, Govender T. Microwave-Assisted Synthesis of Guanidine Organocatalysts Bearing a Tetrahydroisoquinoline Framework and Their Evaluation in Michael Addition Reactions. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200303] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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74
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Honarparvar B, Makatini MM, Pawar SA, Petzold K, Soliman MES, Arvidsson PI, Sayed Y, Govender T, Maguire GEM, Kruger HG. Pentacycloundecane-diol-Based HIV-1 Protease Inhibitors: Biological Screening, 2D NMR, and Molecular Simulation Studies. ChemMedChem 2012; 7:1009-19. [DOI: 10.1002/cmdc.201100512] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2011] [Revised: 03/22/2012] [Indexed: 11/11/2022]
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75
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Lima AH, Souza PRM, Alencar N, Lameira J, Govender T, Kruger HG, Maguire GEM, Alves CN. Molecular modeling of T. rangeli, T. brucei gambiense, and T. evansi sialidases in complex with the DANA inhibitor. Chem Biol Drug Des 2012; 80:114-20. [PMID: 22416952 DOI: 10.1111/j.1747-0285.2012.01380.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Trypanosomal (trans-) sialidases are enzymes that catalyze the transfer of sialic acid residues between host and parasite glycoconjugates. Herein, we have used homology modeling to construct the 3D structures of sialidases from Trypanosoma brucei and Trypanosoma evansi. Hybrid quantum mechanical/molecular mechanical molecular dynamics simulations were used to determine the interaction energy between the 2-deoxy-2,3-didehydro-N-acetylneuraminic acid inhibitor and the three sialidases studied here. Our results suggest that the two constructed enzymes share the same basic fold motive of the Trypanosoma rangeli crystallographic structure. In addition, quantum mechanical/molecular mechanical molecular dynamics simulations show that the 2-deoxy-2,3-didehydro-N-acetylneuraminic acid inhibitor forms a stronger complex with Trypanosoma rangeli than with Trypanosoma brucei and Trypanosoma evansi sialidases. Finally, the interaction energy by residues shows that the arginine triad plays a decisive role to complex 2-deoxy-2,3-didehydro-N-acetylneuraminic acid with the enzyme through hydrogen bonding.
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