101
|
Burridge CP, Craw D, Waters JM. River capture, range expansion, and cladogenesis: the genetic signature of freshwater vicariance. Evolution 2006; 60:1038-49. [PMID: 16817543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
River capture is potentially a key geomorphological driver of range expansion and cladogenesis in freshwater-limited taxa. While previous studies of freshwater fish, in particular, have indicated strong relationships between historical river connections and phylogeographic pattern, their analyses have been restricted to single taxa and geological hypotheses were typically constructed a posteriori. Here we assess the broader significance of river capture among taxa by testing multiple species for the genetic signature of a recent river capture event in New Zealand. During the Quaternary an upper tributary of the Clarence River system was diverted into the headwaters of the Wairau River catchment. Mitochondrial DNA (control region and cytochrome b) sequencing of two native galaxiid fishes (Galaxias vulgaris and Galaxias divergens) supports headwater exchange: populations from the Clarence and Wairau Rivers are closely related sister-groups, whereas samples from the geographically intermediate Awatere River are genetically divergent. The upland bully Gobiomorphus breviceps (Eleotridae), in contrast, lacks a genetic signature of the capture event. We hypothesize that there is an increased likelihood of observing genetic signatures from river capture events when they facilitate range expansion, as is inferred for the two galaxiid taxa studied here. When river capture merely translocates genetic lineages among established populations, by contrast, we suggest that the genetic signature of capture is less likely to be retained, as might be inferred for G. breviceps. Rates of molecular evolution calibrated against this recent event were elevated relative to traditional estimates, consistent with the contribution of polymorphisms to branch lengths at shallow phylogenetic levels prior to fixation by purifying selection and drift.
Collapse
|
102
|
Waters JM, McDowall RM. Phylogenetics of the australasian mudfishes: Evolution of an eel-like body plan. Mol Phylogenet Evol 2005; 37:417-25. [PMID: 16137896 DOI: 10.1016/j.ympev.2005.07.003] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2004] [Revised: 06/30/2005] [Accepted: 07/01/2005] [Indexed: 10/25/2022]
Abstract
The mudfish genus Neochanna (Osmeriformes: Galaxiidae) contains six species that exhibit varying degrees of morphological and ecological adaptation to life in swampy conditions. Here, we present the first molecular phylogenetic analysis (16S rRNA+cytochrome b; 1681bp) of the entire genus to (1) test for monophyly of Australian and New Zealand taxa and (2) elucidate morphological character evolution. In addition, we analyse a matrix of 21 morphological characters to test for congruence between mitochondrial DNA and morphology, and to examine total evidence under a Bayesian framework. Molecular data indicate that the diadromous Tasmanian mudfish, N. cleaveri, is sister to a clade of five non-diadromous New Zealand mudfishes. Mapping of morphological characters onto the molecular phylogeny suggests an evolutionary transition from a plesiomorphic "stream" galaxiid morphotype to a more specialised "anguilliform" galaxiid morphotype. Pelvic fins have become increasingly reduced and dorsal, anal, and caudal fins are increasingly confluent. Associated with these changes are elongated nostrils, reduced eyes, and increased anterior cranial ossification. Morphological and total evidence analyses yield similar or identical topologies, respectively. The phylogenetic distribution of diadromy in Neochanna is consistent with a single loss of this character state in New Zealand. However, the strong sister relationship (3.6% divergent; 100% bootstrap support) detected between non-diadromous N. burrowsius (South Island, NZ) and N. rekohua (Chatham Islands) indicates geologically recent dispersal across 850km of ocean. Diadromy may therefore have been retained in the common ancestor of these two mudfish species, and subsequently lost from both lineages.
Collapse
|
103
|
Waters JM, King TM, O'Loughlin PM, Spencer HG. Phylogeographical disjunction in abundant high-dispersal littoral gastropods. Mol Ecol 2005; 14:2789-802. [PMID: 16029478 DOI: 10.1111/j.1365-294x.2005.02635.x] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Abstract Phylogeographical disjunctions in high-dispersal marine taxa are variously ascribed to palaeogeographical conditions or contemporary ecological factors. Associated biogeographical studies, however, seldom incorporate the sampling design required to confidently discriminate among such competing hypotheses. In the current study, over 7800 gastropod specimens were examined for operculum colour, and 129 specimens genetically, to test ecological and historical biogeographical hypotheses relating to biogeographical disjunction in the Southern Hemisphere, and to southern Australia in particular. Mitochondrial DNA sequence analysis of the high-dispersal intertidal gastropod Nerita atramentosa in southern Australia (88 specimens; 18 localities) revealed an east-west phylogeographical split involving two highly divergent clades (26.0 +/- 1.9%) exhibiting minimal geographical overlap in the southeast. The eastern clade of Nerita atramentosa is also widespread in northern New Zealand (43 specimens, 10 localities), but no significant genetic differentiation is explained by the Tasman Sea, a 2000-km-wide oceanic barrier. Spatial genetic structure was not detected within either clade, consistent with the species' dispersive planktotrophic phase lasting for 5-6 months. Digital analysis of operculum colouration revealed substantial differences between eastern (tan) and western (black) specimens. Genetic analysis and visual inspection of 88 Australian specimens revealed a completely nonrandom association between mtDNA data and operculum colouration. Independent examination of a further 7822 specimens from 14 sites in southern Australia revealed both colour morphs at all localities, but reinforced the phylogeographical data by indicating a marked turnover in colour morph abundance associated with a palaeogeographical barrier: Wilsons Promontory. This sharp biogeographical disjunction is in marked contrast to the species' high dispersal abilities. The genetic similarity of Nerita morio (Easter Island) and the eastern Australian + New Zealand lineage (1.1 +/- 0.3%) provides further evidence of long-distance dispersal in southern Nerita. Phylogenetic relationships of nine species (four genera) of Neritidae, an almost exclusively tropical gastropod family, are consistent with the hypothesis that southern temperate black nerites comprise a monophyletic radiation.
Collapse
|
104
|
Waters JM. Historical Bioegeography: An Introduction.—J. V. Crisci, L. Katinas, and P. Posadas. 2003. Harvard University Press, Cambridge MA. 264 pp. ISBN 0–674–01059–0. $45.00 hardcover. Syst Biol 2005. [DOI: 10.1080/10635150590923191] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
|
105
|
Waters JM, Mark O'Loughlin P, Roy MS. Molecular systematics of some Indo-Pacific asterinids (Echinodermata, Asteroidea): does taxonomy reflect phylogeny? Mol Phylogenet Evol 2004; 30:872-8. [PMID: 15012968 DOI: 10.1016/j.ympev.2003.08.019] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2003] [Revised: 08/19/2003] [Indexed: 12/01/2022]
|
106
|
Waters JM, Roy MS. Phylogeography of a high-dispersal New Zealand sea-star: does upwelling block gene-flow? Mol Ecol 2004; 13:2797-806. [PMID: 15315690 DOI: 10.1111/j.1365-294x.2004.02282.x] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
New Zealand's (NZ) geographical isolation, extensive coastline and well-characterized oceanography offer a valuable system for marine biogeographical research. Here we use mtDNA control region sequences in the abundant endemic sea-star Patiriella regularis to test the following literature-based predictions: that coastal upwelling disrupts north-south gene flow and promotes population differentiation (hypothesis 1); and that an invasive Tasmanian population of the species was introduced anthropogenically from southern New Zealand (hypothesis 2). We sequenced 114 samples from 22 geographical locations, including nine sites from North Island, nine from South Island, one from Stewart Island and three from Tasmania. Our analysis of these sequences revealed an abundance of shallow phylogenetic lineages within P. regularis (68 haplotypes, mean divergence 0.9%). We detected significant genetic heterogeneity between pooled samples from northern vs. southern New Zealand (FST = 0.072; P = 0.0002), consistent with the hypothesis that upwelling disrupts gene flow between these regions (hypothesis 1). However, we are currently unable to rule out the alternative hypothesis that Cook Strait represents a barrier to dispersal (North Island vs. South Island; FST = 0.031; P = 0.0467). The detection of significant spatial structure in NZ samples is consistent with restricted gene flow, and the strong structure evident in northern NZ may be facilitated by distinct ocean current systems. Four shared haplotypes and nonsignificant differentiation (FST = 0.025; P = 0.2525) between southern New Zealand and Tasmanian samples is consistent with an anthropogenic origin for the latter population (hypothesis 2).
Collapse
|
107
|
Waters JM, O'Loughlin PM, Roy MS. Cladogenesis in a starfish species complex from southern Australia: evidence for vicariant speciation? Mol Phylogenet Evol 2004; 32:236-45. [PMID: 15186810 DOI: 10.1016/j.ympev.2003.11.014] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2003] [Revised: 11/10/2003] [Indexed: 11/30/2022]
Abstract
DNA sequencing (cytochrome oxidase I; 82 sequences; 25 locations) of a species complex of Australian six-rayed sea-stars (genus Patiriella) reveals four well-supported mtDNA clades, corresponding to P. oriens, P. occidens, P. medius, and P. gunnii. These clades have non-random geographic distributions along an east to west axis that are broadly consistent with the biogeographic provinces of southern Australia proposed by. The taxa are deeply divergent (minimum 7.5%) and are estimated to have originated during the late Pliocene. By contrast, intra-clade divergences are small, typically less than 1.0%. Phylogenetic analysis of mtDNA provides strong support for the combined monophyly of multicoloured forms (P. oriens, P. occidens, and P. medius; 100% bootstrap support) and suggests that P. medius (central) and P. occidens (western) may be sister taxa (up to 76% bootstrap support). Maximum likelihood analysis of nuclear DNA sequences (actin; 1437 bp) yields an optimal tree largely consistent with mtDNA groupings, but with little bootstrap support. The biogeographic distribution of P. oriens (eastern) and P. occidens (western) is roughly consistent with a vicariant model involving allopatric divergence during glaciation. In addition, we propose that the Great Australian Bight may also have retained isolated populations during glacial periods, perhaps explaining the "central" distributions of P. gunnii and P. medius.
Collapse
|
108
|
Abstract
We used mitochondrial DNA (mtDNA) sequences to test biogeographic hypotheses for Patiriella exigua (Asterinidae), one of the world's most widespread coastal sea stars. This small intertidal species has an entirely benthic life history and yet occurs in southern temperate waters of the Atlantic, Indian, and Pacific oceans. Despite its abundance around southern Africa, southeastern Australia, and several oceanic islands, P. exigua is absent from the shores of Western Australia, New Zealand, and South America. Phylogenetic analysis of mtDNA sequences (cytochrome oxidase I, control region) indicates that South Africa houses an assemblage of P. exigua that is not monophyletic (P = 0.04), whereas Australian and Lord Howe Island specimens form an interior monophyletic group. The placement of the root in Africa and small genetic divergences between eastern African and Australian haplotypes strongly suggest Pleistocene dispersal eastward across the Indian Ocean. Dispersal was probably achieved by rafting on wood or macroalgae, which was facilitated by the West Wind Drift. Genetic data also support Pleistocene colonization of oceanic islands (Lord Howe Island, Amsterdam Island, St. Helena). Although many biogeographers have speculated about the role of long-distance rafting, this study is one of the first to provide convincing evidence. The marked phylogeographic structure evident across small geographic scales in Australia and South Africa indicates that gene flow among populations may be generally insufficient to prevent the local evolution of monophyly. We suggest that P. exigua may rely on passive mechanisms of dispersal.
Collapse
|
109
|
O’Loughlin PM, Waters JM. A molecular and morphological revision of genera of Asterinidae (Echinodermata: Asteroidea). ACTA ACUST UNITED AC 2004. [DOI: 10.24199/j.mmv.2004.61.1] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
|
110
|
King KJ, Young KD, Waters JM, Wallis GP. Preliminary genetic analysis of koaro(Galaxias brevipinnis)in New Zealand lakes: Evidence for allopatric differentiation among lakes but little population subdivision within lakes. J R Soc N Z 2003. [DOI: 10.1080/03014223.2003.9517747] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
111
|
Waters JM, Saruwatari T, Kobayashi T, Oohara I, McDowall RM, Wallis GP. Phylogenetic placement of retropinnid fishes: data set incongruence can be reduced by using asymmetric character state transformation costs. Syst Biol 2002; 51:432-49. [PMID: 12079643 DOI: 10.1080/10635150290069887] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022] Open
Abstract
We used mitochondrial DNA sequences to determine the phylogenetic placement of southern smelts (Retropinnidae), a group of diadromous fishes endemic to New Zealand and Australia. Our genetic data strongly support a sister group relationship between retropinnids and northern hemisphere smelts (Osmeridae), a relationship that seems consistent with the similar appearance and life history strategies of these two groups. Our analysis indicates that Retropinnidae and Osmeridae together represent the sister group to the southern hemisphere galaxiid fishes (Galaxiidae). However, this finding conflicts with several recent osteological analyses, which supported a sister relationship for Retropinnidae and Galaxiidae, giving a monophyletic southern hemisphere assemblage (Galaxioidea). We review cases of incongruence and discuss factors that might explain significant disagreement between molecular and morphological data matrices. We suggest that repeated evolutionary simplification may have undermined the accuracy of morphological hypotheses of osmeroid relationships. Although equally weighted parsimony analysis of morphological data rejects the molecular hypothesis (Osmeridae + Retropinnidae), implementation of a range of weighting schemes suggests that incongruence is nonsignificant under asymmetric character transformation models. We propose that a simple "equal transformation cost" parsimony analysis may be biologically unrealistic, especially when reductive homoplasy is widespread; as is increasingly being accepted, complex character states are more readily lost than gained. Therefore, we recommend that morphological systematists routinely implement a range of character transformation models to assess the sensitivity of their phylogenetic reconstructions. We discuss the antitropical biogeography of osmeroid fishes in the context of vicariance and transequatorial dispersal.
Collapse
|
112
|
Bauer PJ, Wiebe SA, Waters JM, Bangston SK. Reexposure breeds recall: effects of experience on 9-month-olds' ordered recall. J Exp Child Psychol 2001; 80:174-200. [PMID: 11529674 DOI: 10.1006/jecp.2000.2628] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
On the basis of three experiences, 9-month-olds recall specific events after one month. We tested whether multiple experiences are necessary, or merely facilitative, of 9-month-olds' long-term recall. In two experiments, using deferred imitation, infants were exposed to multi-step sequences either one time, two times, or three times prior to a one-month delay. In Experiment 1, regardless of the number of experiences, infants did not demonstrate recall. In Experiment 2, infants were tested on and reexposed to the events after one week; recall was tested again one month later. Performance after 1 week in Experiment 2 was greater than performance after one month in Experiment 1. Moreover, presumably as a function of reexposure after one week, infants recalled the individual actions of the events one month later. Infants in the three-experience condition also evidenced ordered recall after one month. Implications for the developmental status of the neural substrate supporting long-term recall are discussed.
Collapse
|
113
|
Waters JM, Craw D, Youngson JH, Wallis GP. Genes meet geology: fish phylogeographic pattern reflects ancient, rather than modern, drainage connections. Evolution 2001; 55:1844-51. [PMID: 11681739 DOI: 10.1111/j.0014-3820.2001.tb00833.x] [Citation(s) in RCA: 140] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
We used DNA analysis of the freshwater Galaxias vulgaris complex (Pisces: Galaxiidae) to test a geological hypothesis of drainage evolution in South Island, New Zealand. Geological evidence suggests that the presently north-flowing Nevis River branch of the Clutha/Kawarau River system (Otago) once flowed south into the Nokomai branch of the Mataura system (Southland). The flow reversal is thought to have resulted from fault and fold activity associated with post-Miocene uplift. Mitochondrial DNA sequence data (control region and cytochrome b genes; 76 individuals; maximum divergence 7.1%) corroborate this geomorphological hypothesis: The Nevis River retains a freshwater fish species (Galaxias gollumoides; five sites; 10 haplotypes) that is otherwise restricted to Southland (nine sites; 15 haplotypes). There is no indication that the Nevis River lineage of G. gollumoides lives elsewhere in the Clutha/ Kawarau system (> 30 sites). Likewise, two widespread Clutha lineages (G. 'sp D'; G. anomalus-G. pullus) are apparently absent from the Nevis (> 30 sites). In particular, G. 'sp D' lives throughout much of the Clutha (12 sites, 23 haplotypes), including a tributary of the Kawarau, but is absent from the Nevis itself. Conventional molecular clock calibrations (based on a minimum Nevis-Mataura haplotype divergence of 3.0%) indicate that the Nevis flow reversal may have occurred in the early-mid Pleistocene, which is roughly consistent with geological data. The broad phylogeographic structure evident in the Clutha system is consistent with the sedentary nature of nonmigratory galaxiids. Our study reinforces the value of combining biological and geological data for the formulation and testing of historical hypotheses.
Collapse
|
114
|
Reese CL, Waters JM, Pagels JF, Brown BL. GENETIC STRUCTURING OF RELICT POPULATIONS OF GAPPER'S RED-BACKED VOLE (CLETHRIONOMYS GAPPERI). J Mammal 2001. [DOI: 10.1644/1545-1542(2001)082<0289:gsorpo>2.0.co;2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
|
115
|
Waters JM, Wallis GP. Cladogenesis and loss of the marine life-history phase in freshwater galaxiid fishes (Osmeriformes: Galaxiidae). Evolution 2001; 55:587-97. [PMID: 11327165 DOI: 10.1554/0014-3820(2001)055[0587:calotm]2.0.co;2] [Citation(s) in RCA: 94] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Switches from migratory (diadromous) to nonmigratory (freshwater) life histories are known to have occurred repeatedly in some aquatic taxa. However, the significance of the loss of diadromy as an initiator for speciation remains poorly understood. The rivers of New Zealand's South Island house a species flock of recently derived nonmigratory galaxiid fishes known as the Galaxias vulgaris complex. Members of this complex are morphologically and genetically similar to the diadromous G. brevipinnis found in New Zealand and southeastern Australia. We hypothesised that South Island's G. vulgaris complex (at least 10 nonmigratory lineages) represents a number of independent radiations from a migratory G. brevipinnis stock, with repeated loss of diadromy. Sequence data were obtained for 31 ingroup samples (G. vulgaris complex and G. brevipinnis) plus four outgroup taxa. A well-resolved phylogeny based on 5039 base pairs of the mitochondrial genome suggests that diadromy has been lost on three separate occasions. Thus, speciation in these galaxiid fishes is partly an incidental phenomenon caused by switches from diadromous to nonmigratory strategies. However, much of the subsequent nonmigratory diversity is monophyletic, suggesting that drainage evolution (vicariance) has also played a major role in cladogenesis. Levels of sequence divergence among major ingroup lineages (1.6-12.7%) suggest that the radiation is considerably older relative to Northern Hemisphere (postglacial) complexes of salmonid, osmerid, and gasterosteid fishes. Sympatric taxa are not monophyletic, suggesting that their coexistence reflects secondary contact rather than sympatric speciation. The monophyly of New Zealand G. brevipinnis is well supported, but both mitochondrial DNA and nuclear sequences indicate that G. brevipinnis is paraphyletic on an intercontinental scale. The divergence (maximum 11.5%) between Tasmanian and New Zealand G. brevipinnis, although large, supports marine dispersal rather than vicariance as the principle biogeographic mechanism on an intercontinental scale.
Collapse
|
116
|
Waters JM, Craw D, Youngson JH, Wallis GP. GENES MEET GEOLOGY: FISH PHYLOGEOGRAPHIC PATTERN REFLECTS ANCIENT, RATHER THAN MODERN, DRAINAGE CONNECTIONS. Evolution 2001. [DOI: 10.1554/0014-3820(2001)055[1844:gmgfpp]2.0.co;2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
117
|
Waters JM, López JA, Wallis GP. Molecular phylogenetics and biogeography of galaxiid fishes (Osteichthyes: Galaxiidae): dispersal, vicariance, and the position of Lepidogalaxias salamandroides. Syst Biol 2000; 49:777-95. [PMID: 12116439 DOI: 10.1080/106351500750049824] [Citation(s) in RCA: 109] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022] Open
Abstract
The galaxiid fishes exhibit a gondwanan distribution. We use mitochondrial DNA sequences to test conflicting vicariant and dispersal biogeographic hypotheses regarding the Southern Hemisphere range of this freshwater group. Although phylogenetic resolution of cytochrome b and 16S rRNA sequences is largely limited to more recent divergences, our data indicate that the radiation can be interpreted as several relatively recent dispersal events superimposed on an ancient gondwanan radiation. Genetic relationships contradict the findings of recent morphological analyses of galaxioid fishes. In particular, we examine several hypotheses regarding phylogenetic placement of the enigmatic Lepidogalaxias. Although most workers consider Lepidogalaxias to be an unusual scaled member of the Southern Hemisphere galaxioids, it has also been suggested that this species is related to the Northern Hemisphere esocoids. Our data strongly suggest that this species is not a galaxiid, and the alternative hypothesized esocoid relationship cannot be rejected. The species-rich genus Galaxias is shown to be polyphyletic and the generic taxonomy of the Galaxiinae is reassessed in the light of phylogenetic relationships. Juvenile saltwater-tolerance is phylogenetically distributed throughout the Galaxiinae, and the loss of this migratory phase may be a major cause of speciation.
Collapse
|
118
|
Waters JM, Dijkstra LH, Wallis GP. Biogeography of a southern hemisphere freshwater fish: how important is marine dispersal? Mol Ecol 2000; 9:1815-21. [PMID: 11091317 DOI: 10.1046/j.1365-294x.2000.01082.x] [Citation(s) in RCA: 131] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Galaxias maculatus is one of the world's most widely distributed freshwater fish. This species has a marine-tolerant juvenile phase, and a geographical range extending through much of the southern hemisphere. We conducted phylogeographic analyses of 163 control region haplotypes of G. maculatus, including samples from New Zealand (five locations), Tasmania (one location) and Chile (one location). A lack of genetic structure among New Zealand samples suggests that marine dispersal facilitates considerable gene flow on an intra-continental scale. The discovery of a Tasmanian-like haplotype in one of 144 New Zealand samples indicates that inter-continental marine dispersal occurs but is insufficient to prevent mitochondrial DNA differentiation among continents. The sister relationship of Tasmanian and New Zealand clades implies that marine dispersal is an important biogeographical mechanism for this species. However, a vicariant role in the divergence of eastern and western Pacific G. maculatus cannot be rejected.
Collapse
|
119
|
Waters JM, Wallis GP. Across the Southern Alps by river capture? Freshwater fish phylogeography in South Island, New Zealand. Mol Ecol 2000; 9:1577-82. [PMID: 11050552 DOI: 10.1046/j.1365-294x.2000.01035.x] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
We used DNA analysis of galaxiid fish to test a hypothesis of localized headwater capture in South Island, New Zealand. The restricted western, but widespread eastern, distributions of three nonmigratory freshwater fish species suggest that part of the east-flowing Waiau River has been captured by the west-flowing Buller River. However, mitochondrial control region (Kimura 2-parameter distance = 4.1-5.4%) and microsatellite flanking sequences do not support a relationship between Waiau (N = 4 fish sequences) and western populations (N = 8) of Galaxias vulgaris. Instead, the point of capture is probably to the north-east, perhaps the Nelson lakes region. Phylogenetic analysis indicates that western populations, along with populations in the north-east (N = 18), represent a previously unidentified monophyletic Evolutionarily Significant Unit, possibly a cryptic species. We suggest a general caveat for zoogeographic conclusions based on distributional data alone.
Collapse
|
120
|
Waters JM, Esa YB, Wallis GP. Characterization of microsatellite loci from a New Zealand freshwater fish (Galaxias vulgaris) and their potential for analysis of hybridization in Galaxiidae. Mol Ecol 1999. [DOI: 10.1046/j.1365-294x.1999.00655_4.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
121
|
Waters JM, Burridge CP. Extreme intraspecific mitochondrial DNA sequence divergence in Galaxias maculatus (Osteichthys: Galaxiidae), one of the world's most widespread freshwater fish. Mol Phylogenet Evol 1999; 11:1-12. [PMID: 10082606 DOI: 10.1006/mpev.1998.0554] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Biogeographic controversies surrounding the widespread freshwater fish, Galaxias maculatus, were addressed with DNA sequence data. Mitochondrial cytochrome b and 16S rRNA sequences were obtained from representatives of six populations of this species. Substantial levels of cytochrome b (maximum 14.6%) and 16S rRNA sequence divergence (maximum 6.0%) were detected between western Pacific (Tasmania-New Zealand) and South American (Chile-Falkland Islands) haplotypes. A considerable level of divergence was also detected between Tasmanian and New Zealand haplotypes (maximum 5.1%) and within and among Chilean and Falkland Island G. maculatus (maximum 3. 8%). The phylogenetic structure of haplotypes conflicts with the accepted pattern of continental fragmentation. Molecular clock calibrations suggest that haplotype divergences postdate the fragmentation of Gondwana. These findings point to marine dispersal rather than ancient vicariance as an explanation for the wide distribution. The phylogenetic structure of South American haplotypes was not consistent with their geographic distribution. We consider factors such as population divergence, population size, dispersal, secondary contact, and philopatry as potential causes of the high level of mtDNA nucleotide diversity in this species.
Collapse
|
122
|
Anderson BF, Baker HM, Dodson EJ, Norris GE, Rumball SV, Waters JM, Baker EN. Structure of human lactoferrin at 3.2-A resolution. Proc Natl Acad Sci U S A 1987; 84:1769-73. [PMID: 3470756 PMCID: PMC304522 DOI: 10.1073/pnas.84.7.1769] [Citation(s) in RCA: 256] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
The three-dimensional structure of human milk lactoferrin, a member of the transferrin family, has been determined crystallographically at 3.2-A resolution. The molecule has two-fold internal homology. The N- and C-terminal halves form two separate globular lobes, connected by a short alpha-helix, and carry one iron-binding site each. Each lobe has the same folding, based on two domains of similar supersecondary structure, with the iron site at the domain interface. Each iron atom is coordinated by four protein ligands: two tyrosines, one histidine, and one aspartate. A probable CO3(2-) (or HCO3-) ion is suggested by the electron density, bound to iron and adjacent to an arginine side chain and a helix N terminus. The protein folding and location of the binding sites show marked similarities with those of other binding proteins, notably the sulfate-binding protein from Salmonella typhimurium.
Collapse
|
123
|
Pauptit RA, Waters JM, Rowan DD, Russell GB, Connor HE, Purdie AW. The structure of 19αH-Lupeol methyl ether from Chionochloa bromoides. Aust J Chem 1984. [DOI: 10.1071/ch9841341] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The structure of l9αH-lupeol
methyl ether isolated from Chionochloa bromoides has been determined by 13C n.m.r.
spectroscopy and X-ray diffraction. Crystals of the triterpene
are monoclinic, space group P21, with a 8.071(1), b
14.5477(6), c 11.6061(4) �, β
104.466(5)�, V 319.6 �3 and Z 2. The structure was solved by direct
methods, and was refined to R 0.054 for 1092 observed reflections. Previous
reports of synthetic and naturally occurring 19αH-lupanes are briefly
discussed, as is the distribution of the chemotaxonomically
discriminating triterpene methyl ethers in Chionochloa.
Collapse
|
124
|
Nielson AJ, Waters JM. Phenylimido complexes of tungsten(VI) and tungsten(V). The crystal and molecular structure of Trichloro(phenylimido)bis(trimethylphosphine)tungsten(V). Aust J Chem 1983. [DOI: 10.1071/ch9830243] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Tetrachloro(phenylimido)tungsten(VI)
is reduced by trimethylphosphine in tetrahydrofuran
solution to give the tungsten(V) complex PhNWCl3(Pme3)2
in which the phenylimido multiple bond remains
intact. The complex reacts with oxygen to form the phosphine oxide complex PhNWCl3
(OPMe3)2. Pyridine and alkyl cyanides do not reduce
tetrachloro(phenylimido)tungsten(V1)
but give the adducts PhNWCl4.L (L = py, MeCN, EtCN). The crystal and
molecular structure of the title complex has been determined from single-crystal
X-ray diffractometer data. The crystals are monoclinic with a 14.903, b 10.221, c 14.380Š β 116.05�, space group P21/c,
Z 4. The structure has been solved by Patterson and Fourier methods and refined
to R 0.030 for the 1566 observed data. Distorted octahedral coordination
geometry is found with two trans trimethylphosphine and two trans chloride ligands; a third chloride is trans to the phenylimido group. The W-N(imido) bond length is 1.731 �.
Collapse
|
125
|
Abstract
The X-ray crystal structure
of 3α,4α:5β,6β-diepoxyandrostan-17-one has been determined.
Crystals of the title compound (C19H26O3)are
monoclinic, space group P21, with a 9.208(2), b 9.620(4), c 9.312(3) �, β 99.14(2)�, V 814.5
Ǻ3 and Z 2. The structure was solved by direct methods and refined
to R 0.039 for 887 observed reflexions. The 3α,4α:5β,6β
configuration of the epoxide rings confirms the assignment based on proton
n.m.r. studies.
Collapse
|
126
|
Abstract
This investigation examined the effects of different localizing cues on the precision with which subjects can recall the position of a target in space. The availability of the cues--vision, kinesthesis, or both--was varied during both learning and recall. Subjects (age range 26 to 58 yr.) placed the stimulus or watched it being placed. The stimulus was removed, and subjects replaced or indicated its replacement location. Results show a striking similarity of performance for all subjects and significant performance differences relative to the different cues. The results provide information about intramodal and intermodal visual and kinesthetic transfer effects and about the effects of unimodal and multimodal input in such transfer. Results confirm a dominance of vision over kinesthesis, i.e., "kinesthetic memory" does not provide as accurate localizing information as does "visual memory."
Collapse
|
127
|
Beckingsale PG, Waters JM, Waters TN. An X-ray structural examination of an intermediate from the cleavage of a vic-diol by iodine(I) acetate. Aust J Chem 1980. [DOI: 10.1071/ch9800671] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The crystal structure of a
compound isolated after reaction of iodine(1) acetate with cis-cyclohexane-1,2-diol
has been determined by direct methods. It is identified as 2,2'-(butane-1,4-diyl)bis(hexahydro-1,3-benzodioxole).
Crystals are orthorhombic, a 8.625(2), b 7.589(1), c 26.187(5) Ǻ, space
group Pbca, Z 4. Least- squares refinement brought R
to 0.046.
Collapse
|
128
|
Waters JM. Quality control or, what's going on out there? EMERGENCY MEDICAL SERVICES 1979; 8:20, 22. [PMID: 10241653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
|
129
|
McCarthy D, Fitzgerald GA, O'Connell LG, Waters JM, Watt DW, Stevens FM, McCarthy CF, Drury MI. Histocompatibility antigens and haemochromatosis in Ireland. Ir J Med Sci 1979; 148:168-72. [PMID: 511477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
|
130
|
Clark GR, Orbell JD, Waters JM. The crystal and molecular structure of the polymeric copper (II) complex of inosine 5'-monophosphate. A comparison with the previously reported zinc analogue. BIOCHIMICA ET BIOPHYSICA ACTA 1979; 562:361-4. [PMID: 444531 DOI: 10.1016/0005-2787(79)90179-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
X-ray analysis of [Cu . (5'-IMP) . H2O] has shown a structure containing polymeric chains of composition [Cu.5'-IMP]n in which the copper atom is directly bound to N(7) of the base and to three oxygen atoms of different phosphate groups. Whereas the coordination geometry in the analogous zinc complex resembles a distorted tetrahedrom, that in the copper complex is a distorted square plane with weak axial interactions.
Collapse
|
131
|
Godfrey JE, Waters JM. The crystal and molecular structure of the bisnorditerpenoid, inumakilactone. Aust J Chem 1975. [DOI: 10.1071/ch9750745] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Inumakilactone, (C18H20O8),
crystallizes in space group P212121 with a =
8.15(2), b = 11.15(1), c = 17.88(2) Ǻ, Z = 4. The structure was solved by
direct methods from visually estimated film data and refined to an R of 0.091
for 1338 independent reflections. The structure of the bisnorditerpenoid
molecule differs from that previously proposed in respect of the orientation of
the epoxy group on ring B.
Collapse
|
132
|
Waters JM. The Jacksonville Emergency Medical System. THE NEBRASKA MEDICAL JOURNAL 1974; 59:44-9. [PMID: 4812202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
|
133
|
Waters JM, Wells CH. The effects of a modern emergency medical care system in reducing automobile crash deaths. THE JOURNAL OF TRAUMA 1973; 13:645-7. [PMID: 4715031 DOI: 10.1097/00005373-197307000-00009] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
|
134
|
Waters JM. Jacksonville's emergency system. Am J Nurs 1972; 72:1289. [PMID: 4482592 DOI: 10.1097/00000446-197207000-00045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
|
135
|
|
136
|
Baker RM, Waters JM. Use of general duty ambulances as mobile coronary care units. THE JOURNAL OF THE FLORIDA MEDICAL ASSOCIATION 1970; 57:22-3. [PMID: 5474901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
|
137
|
Waters JM. Voluntaryism is elegant, but fragile. JOURNAL - TENNESSEE STATE DENTAL ASSOCIATION 1969; 49:104-8. [PMID: 5253078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
|
138
|
Nockolds CK, Ramaseshan S, Waters TN, Waters JM, Hodgkin DC. Structure of a monocarboxylic acid derivative of vitamin B 12. Crystal and molecular structure from x-ray analysis. Nature 1967; 214:129-30. [PMID: 6034204 DOI: 10.1038/214129a0] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
|