Evidence that the Rhodopsin Kinase (GRK1) N-Terminus and the Transducin Gα C-Terminus Interact with the Same "Hydrophobic Patch" on Rhodopsin TM5

Phosphorylation of G protein-coupled receptors (GPCRs) terminates their ability to couple with and activate G proteins by increasing their affinity for arrestins. Unfortunately, detailed information regarding how GPCRs interact with the kinases responsible for their phosphorylation is still limited. Here, we purified fully functional GPCR kinase 1 (GRK1) using a rapid method and used it to gain insights into how this important kinase interacts with the GPCR rhodopsin. Specifically, we find that GRK1 uses the same site on rhodopsin as the transducin (Gt) Gtα C-terminal tail and the arrestin "finger loop", a cleft formed in the cytoplasmic face of the receptor upon activation. Our studies also show GRK1 requires two conserved residues located in this cleft (L226 and V230) that have been shown to be required for Gt activation due to their direct interactions with hydrophobic residues on the Gα C-terminal tail. Our data and modeling studies are consistent with the idea that all three proteins (Gt, GRK1, and visual arrestin) bind, at least in part, in the same site on rhodopsin and interact with the receptor through a similar hydrophobic contact-driven mechanism.

Polysiloxane-functionalized graphene oxide paper: pyrolysis and performance as a Li-ion battery and supercapacitor electrode

Exfoliated graphene oxide (GO) and polysiloxane were blended and pyrolyzed to synthesize free-standing SiOC–graphene composite papers.

Three-dimensional polymer-derived ceramic/graphene paper as a Li-ion battery and supercapacitor electrode

We report synthesis and electrochemical performance of silicon-based molecular precursor-derived ceramic (PDC)/carbon nanotube-embedded graphene self-supporting composite papers as Li-ion battery and supercapacitor electrodes.

Linker proteins enable ultrafast excitation energy transfer in the phycobilisome antenna system of Thermosynechococcus vulcanus

Comparison of kinetics of photoexcitation migration from PC620 to APC Core in extracted and intact pentacyclic phycobilisomes ofT. vulcanus. The extracted PBS does not have linker protein, while intact has them and they facilitate the migration.

Cetacean response to summer maritime traffic in the Western Mediterranean Sea

Maritime traffic is one of many anthropogenic pressures threatening the marine environment. This study was specifically designed to investigate the relationship between vessels presence and cetacean sightings in the high sea areas of the Western Mediterranean Sea region. We recorded and compared the total number of vessels in the presence and absence of cetacean sightings using data gathered during the summer season (2009-2013) along six fixed transects repeatedly surveyed. In locations with cetacean sightings (N = 2667), nautical traffic was significantly lower, by 20%, compared to random locations where no sightings occurred (N = 1226): all cetacean species, except bottlenose dolphin, were generally observed in locations with lower vessel abundance. In different areas the species showed variable results likely influenced by a combination of biological and local environmental factors. The approach of this research helped create, for the first time, a wide vision of the different responses of animals towards a common pressure.

Polymer-Derived Ceramic Functionalized MoS2 Composite Paper as a Stable Lithium-Ion Battery Electrode

A facile process is demonstrated for the synthesis of layered SiCN-MoS₂ structure via pyrolysis of polysilazane functionalized MoS₂ flakes. The layered morphology and polymer to ceramic transformation on MoS₂ surfaces was confirmed by use of electron microscopy and spectroscopic techniques. Tested as thick film electrode in a Li-ion battery half-cell, SiCN-MoS₂ showed the classical three-stage reaction with improved cycling stability and capacity retention than neat MoS₂. Contribution of conversion reaction of Li/MoS₂ system on overall capacity was marginally affected by the presence of SiCN while Li-irreversibility arising from electrolyte decomposition was greatly suppressed. This is understood as one of the reasons for decreased first cycle loss and increased capacity retention. SiCN-MoS₂ in the form of self-supporting paper electrode (at 6 mg·cm⁻²) exhibited even better performance, regaining initial charge capacity of approximately 530 mAh·g⁻¹ when the current density returned to 100 mA·g⁻¹ after continuous cycling at 2400 mA·g⁻¹ (192 mAh·g⁻¹). MoS₂ cycled electrode showed mud-cracks and film delamination whereas SiCN-MoS₂ electrodes were intact and covered with a uniform solid electrolyte interphase coating. Taken together, our results suggest that molecular level interfacing with precursor–derived SiCN is an effective strategy for suppressing the metal-sulfide/electrolyte degradation reaction at low discharge potentials.

Coriolis effects enhance lift on revolving wings

At high angles of attack, an aircraft wing stalls. This dreaded event is characterized by the development of a leading edge vortex on the upper surface of the wing, followed by its shedding which causes a drastic drop in the aerodynamic lift. At similar angles of attack, the leading edge vortex on an insect wing or an autorotating seed membrane remains robustly attached, ensuring high sustained lift. What are the mechanisms responsible for both leading edge vortex attachment and high lift generation on revolving wings? We review the three main hypotheses that attempt to explain this specificity and, using direct numerical simulations of the Navier-Stokes equations, we show that the latter originates in Coriolis effects.

Evidence of additional excitation energy transfer pathways in the phycobiliprotein antenna system of Acaryochloris marina

To improve the energy conversion efficiency of solar organic cells, the clue may lie in the development of devices inspired by an efficient light harvesting mechanism of some aquatic photosynthetic microorganisms that are adapted to low light intensity.

Glutaredoxin 2 (Grx2) gene deletion induces early onset of age-dependent cataracts in mice

Glutaredoxin 2 (Grx2) is an isozyme of glutaredoxin1 (thioltransferase) present in the mitochondria and nucleus with disulfide reductase and peroxidase activities, and it controls thiol/disulfide balance in cells. In this study, we investigated whether Grx2 gene deletion could induce faster age-related cataract formation and elucidated the biochemical changes effected by Grx2 gene deletion that may contribute to lens opacity. Slit lamp was used to examine the lenses in Grx2 knock-out (KO) mice and age-matched wild-type (WT) mice ages 1 to 16 months. In the Grx2 null mice, the lens nuclear opacity began at 5 months, 3 months sooner than that of the control mice, and the progression of cataracts was also much faster than the age-matched controls. Lenses of KO mice contained lower levels of protein thiols and GSH with a significant accumulation of S-glutathionylated proteins. Actin, αA-crystallin, and βB2-crystallin were identified by Western blot and mass spectroscopy as the major S-glutathionylated proteins in the lenses of 16-month-old Grx2 KO mice. Compared with the WT control, the lens of Grx2 KO mice had only 50% of the activity in complex I and complex IV and less than 10% of the ATP pool. It was concluded that Grx2 gene deletion altered the function of lens structural proteins through S-glutathionylation and also caused severe disturbance in mitochondrial function. These combined alterations affected lens transparency.

Abstract LB-308: Monoubiquitination is critical for Otub1 to suppress UbcH5 and stabilize p53

Otub1 regulates p53 stability and activity via non-canonical inhibition of the MDM2 cognate ubiquitin (Ub)-conjugating enzyme (E2) UbcH5. However, it is not clear how this activity of Otub1 is regulated in cells. Here we report that Otub1 is monoubiquitinated by UbcH5 in cells and in vitro, primarily at lysine 59 and 109 residues. This monoubiquitination in turn contributes to the activity of Otub1 to suppress UbcH5. The lysine-free Otub1 mutant (Otub1K0) fails to be monoubiquitinated and is unable to suppress the Ub-conjugating activity of UbcH5 in vitro and the MDM2-mediated p53 ubiquitination in cells. Consistently, this mutant is unable to stabilize p53, induce apoptosis, and suppress cell growth. Overexpression of Otub1K0 inhibits DNA-damage induced apoptosis. Adding either Lys 59 or Lys 109 back to the Otub1K0 mutant restored the monoubiquitination of Otub1 and its function to stabilize and activate p53. We further show that UbcH5 preferentially binds to the monoubiquitinated Otub1 via Ub interaction with its backside donor Ub-interacting surface, suggesting that this binding interferes with the self-assembly of Ub-charged UbcH5 (UbcH5∼Ub) conjugates, which is critical for the Ub transfer. Thus, our data reveal novel insights into the Otub1 inhibition of E2 wherein monoubiquitination promotes the interaction of Otub1 with and its function to suppress UbcH5.

Citation Format: Yuhunag Li, Xiao-Xin Sun, Johannes Elferich, Ujwal Shinde, Larry David, Mushui Dai. Monoubiquitination is critical for Otub1 to suppress UbcH5 and stabilize p53. [abstract]. In: Proceedings of the 105th Annual Meeting of the American Association for Cancer Research; 2014 Apr 5-9; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2014;74(19 Suppl):Abstract nr LB-308. doi:10.1158/1538-7445.AM2014-LB-308

Extensive heterosis in growth of yeast hybrids is explained by a combination of genetic models

Heterosis, also known as hybrid vigor, is the superior performance of a heterozygous hybrid relative to its homozygous parents. Despite the scientific curiosity of this phenotypic phenomenon and its significance for food production in agriculture, its genetic basis is insufficiently understood. Studying heterosis in yeast can potentially yield insights into its genetic basis, can allow one to test the different hypotheses that have been proposed to explain the phenomenon and allows better understanding of how to take advantage of this phenomenon to enhance food production. We therefore crossed 16 parental yeast strains to form 120 yeast hybrids, and measured their growth rates under five environmental conditions. A considerable amount of dominant genetic variation was found in growth performance, and heterosis was measured in 35% of the hybrid-condition combinations. Despite previous reports of correlations between heterosis and measures of sequence divergence between parents, we detected no such relationship. We used several analyses to examine which genetic model might explain heterosis. We found that dominance complementation of recessive alleles, overdominant interactions within loci and epistatic interactions among loci each contribute to heterosis. We concluded that in yeast heterosis is a complex phenotype created by the combined contribution of different genetic interactions.

Spanwise gradients in flow speed help stabilize leading-edge vortices on revolving wings

While a leading-edge vortex on an infinite translating wing is shed after a short distance of travel, its counterpart on a finite span revolving insect wing or maple seed membrane exhibits robust attachment. The latter explains the aerodynamic lift generated by such biological species. Here we analyze the mechanisms responsible for leading-edge vortex attachment. We compute the Navier-Stokes solution of the flow past a finite span wing (i) embedded in a uniform oncoming flow, (ii) embedded in a spanwise varying oncoming flow, and (iii) revolving about its root. We show that over flapping amplitudes typical of insect flight (ϕ = 120°), the spanwise gradient of the local wing speed may suffice in maintaining leading-edge vortex attachment. We correlate this result with the development of spanwise flow, driven by the spanwise gradient of pressure, and we evaluate the sensitivity of such a mechanism to the Reynolds number. It is noted, however, that leading-edge vortex attachment through the spanwise gradient of the local wing speed does not promote large lift, which ultimately arises from centrifugal and Coriolis effects.

Controlling the complexation of polysaccharides into multi-functional colloidal assemblies for nanomedicine

The controlled assembly of oppositely charged polysaccharides led to colloids stable in physiological media, capable of encapsulating a molecular drug and of sorbing proteins at their interface. Two types of particles were obtained: both chitosan-dextran sulfate (CS-DS) and chitosan-heparin (CS-HP) stable over 30 days in PBS at 25 and 37°C. At gastric pH 1.2, these particles remained stable over 3 days, enough for a stomach transit. The structural analysis by small angle X-ray scattering (SAXS) showed that CS-DS surface was semi-rough and chains inside particle exhibited rod-like conformation. Moreover, the particle interfaces could efficiently be functionalized with anti-OVA or anti-α4β7 antibodies, in PBS, with the conservation of the antibody bioactivity over at least 8 days. Finally, during the assembly process, a molecular model drug, AMP, could be encapsulated with a loading efficiency up to 72% for CS-DS particles and 66% for CS-HP. All these data establish that the controlled assembly process under equilibrium conditions lead to colloids well suited for the targeted nanodelivery of drugs.

A rare case of ileal metastasis from cervical cancer

We present the case of a 70-year-old woman, with a history of radiation-treated and surgically- resected cervical cancer, who was admitted to our clinic for intermittent sub occlusive symptoms. CT scan revealed a liver nodule and intestinal obstruction. The patient underwent surgery for excision of suspected liver metastasis and resolution of intestinal obstruction.Intraoperatively an ileal tumour was found to be the cause of the obstruction. Anatomo-pathological findings were consistent with an ileal metastasis from the cervical cancer.The liver nodule was only an area of focal steatosis.

Evaluating the thermal damage resistance of graphene/carbon nanotube hybrid composite coatings

We study laser irradiation behavior of multiwalled carbon nanotubes (MWCNT) and chemically modified graphene (rGO)-composite spray coatings for use as a thermal absorber material for high-power laser calorimeters. Spray coatings on aluminum test coupon were exposed to increasing laser irradiance for extended exposure times to quantify their damage threshold and optical absorbance. The coatings, prepared at varying mass % of MWCNTs in rGO, demonstrated significantly higher damage threshold values at 2.5 kW laser power at 10.6 μm wavelength than carbon paint or MWCNTs alone. Electron microscopy and Raman spectroscopy of irradiated specimens show that the coating prepared at 50% CNT loading endure at least 2 kW x cm(-2) for 10 seconds without significant damage. The improved damage resistance is attributed to the unique structure of the composite in which the MWCNTs act as an efficient absorber of laser light while the much larger rGO sheets surrounding them, dissipate the heat over a wider area.

Nascent proteomes in peripheral blood mononuclear cells as a novel source for biomarker discovery in human stroke

BACKGROUND AND PURPOSE

The proteome of newly synthesized proteins (nascent proteome) in peripheral blood mononuclear cells (PBMCs) can be a novel source of stroke biomarkers. Changes in the PBMC nascent proteome after stroke reflect the dynamic response-in-action not detectable in the total proteome (all existing proteins) in blood. Here, we test the application of nascent proteomics as a novel approach for stroke biomarker discovery.

METHODS

The PBMC nascent proteome in human blood was determined by metabolic labeling of fresh PBMC cultures with azidohomoalanine (an azide-containing methionine surrogate), followed by mass spectrometry detection and quantification of azidohomoalanine-labeled proteins. The PBMC nascent and total proteomes were compared between patients with stroke and matched controls.

RESULTS

Both PBMC nascent and total proteomes showed differences between stroke patients and controls. Results of hierarchical clustering analysis of proteomic data revealed greater changes in the nascent than in the total PBMC proteomes, supporting the usefulness of the PBMC nascent proteome as a novel source of stroke biomarkers.

CONCLUSIONS

Nascent proteomes in PBMC can be a novel source for biomarker discovery in human stroke.