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Fevola G, Bergbäck Knudsen E, Ramos T, Carbone D, Wenzel Andreasen J. A Monte Carlo ray-tracing simulation of coherent X-ray diffractive imaging. JOURNAL OF SYNCHROTRON RADIATION 2020; 27:134-145. [PMID: 31868746 DOI: 10.1107/s1600577519014425] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 10/22/2019] [Indexed: 05/28/2023]
Abstract
Coherent diffractive imaging (CDI) experiments are adequately simulated assuming the thin sample approximation and using a Fresnel or Fraunhofer wavefront propagator to obtain the diffraction pattern. Although this method is used in wave-based or hybrid X-ray simulators, here the applicability and effectiveness of an alternative approach that is based solely on ray tracing of Huygens wavelets are investigated. It is shown that diffraction fringes of a grating-like source are accurately predicted and that diffraction patterns of a ptychography dataset from an experiment with realistic parameters can be sampled well enough to be retrieved by a standard phase-retrieval algorithm. Potentials and limits of this approach are highlighted. It is suggested that it could be applied to study imperfect or non-standard CDI configurations lacking a satisfactory theoretical formulation. The considerable computational effort required by this method is justified by the great flexibility provided for easy simulation of a large-parameter space.
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Li Z, Li B. Towards an extremely high resolution broad-band flat-field spectrometer in the `water window'. JOURNAL OF SYNCHROTRON RADIATION 2019; 26:1058-1068. [PMID: 31274428 PMCID: PMC6613118 DOI: 10.1107/s1600577519004648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Accepted: 04/05/2019] [Indexed: 06/09/2023]
Abstract
The optical design of a novel spectrometer is presented, combining a cylindrically convex pre-mirror with a cylindrically concave varied-line-spacing grating (both in the meridional) to deliver a resolving power of 100000-200000 in the `water window' (2-5 nm). Most remarkably, the extremely high spectral resolution is achieved for an effective meridional source size of 50 µm (r.m.s.); this property could potentially be applied to diagnose SASE-FEL and well resolve individual single spikes in its radiation spectrum. The overall optical aberrations of the system are well analysed and compensated, providing an excellent flat-field at the detector domain throughout the whole spectral range. Also, a machine-learning scheme - SVM - is introduced to explore and reconstruct the optimal system with high efficiency.
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Abadi E, Harrawood B, Sharma S, Kapadia A, Segars WP, Samei E. DukeSim: A Realistic, Rapid, and Scanner-Specific Simulation Framework in Computed Tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2019; 38:1457-1465. [PMID: 30561344 PMCID: PMC6598436 DOI: 10.1109/tmi.2018.2886530] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The purpose of this study was to develop a CT simulation platform that is: 1) compatible with voxel-based computational phantoms; 2) capable of modeling the geometry and physics of commercial CT scanners; and 3) computationally efficient. Such a simulation platform is designed to enable the virtual evaluation and optimization of CT protocols and parameters for achieving a targeted image quality while reducing radiation dose. Given a voxelized computational phantom and a parameter file describing the desired scanner and protocol, the developed platform DukeSim calculates projection images using a combination of ray-tracing and Monte Carlo techniques. DukeSim includes detailed models for the detector quantum efficiency, quantum and electronic noise, detector crosstalk, subsampling of the detector and focal spot areas, focal spot wobbling, and the bowtie filter. DukeSim was accelerated using GPU computing. The platform was validated using physical and computational versions of a phantom (Mercury phantom). Clinical and simulated CT scans of the phantom were acquired at multiple dose levels using a commercial CT scanner (Somatom Definition Flash; Siemens Healthcare). The real and simulated images were compared in terms of image contrast, noise magnitude, noise texture, and spatial resolution. The relative error between the clinical and simulated images was less than 1.4%, 0.5%, 2.6%, and 3%, for image contrast, noise magnitude, noise texture, and spatial resolution, respectively, demonstrating the high realism of DukeSim. The runtime, dependent on the imaging task and the hardware, was approximately 2-3 minutes per rotation in our study using a computer with 4 GPUs. DukeSim, when combined with realistic human phantoms, provides the necessary toolset with which to perform large-scale and realistic virtual clinical trials in a patient and scanner-specific manner.
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Egidi A, Balsamo A, Pisani M. High-Index Glass Ball Retroreflectors for Measuring Lateral Positions. SENSORS 2019; 19:s19051082. [PMID: 30832424 PMCID: PMC6427531 DOI: 10.3390/s19051082] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Revised: 02/17/2019] [Accepted: 02/27/2019] [Indexed: 11/16/2022]
Abstract
This paper is concerned with backscattered luminous signals, coming from a particular class of dielectric spheres illuminated by a coherent source. The purpose is to measure the lateral position of the sphere serving as an optical target, to achieve an overall contactless sensor of lateral position in space. Traditional approaches and theories such as ray-tracing and Mie scattering—as implemented in dedicated software—are applied to investigate their fitness for purpose in this application. No previous literature was found dealing with this specific case. Unfortunately, our observations did not match the theories’ predictions to an acceptable degree, and these approaches proved to be unsatisfactory. The rest of the paper focusses then on the development and comparison of suitable algorithms to compute the image coordinates of a representative point, which was in fact the true motivation of this work. Two original algorithms are proposed and discussed. Their robustness and repeatability are benchmarked under noisy conditions and at different distances from the target, with simulated as well as real images. Both resulted capable of sub-pixel accuracy.
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Wang F, Wald I, Wu Q, Usher W, Johnson CR. CPU Isosurface Ray Tracing of Adaptive Mesh Refinement Data. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS 2018; 25:10.1109/TVCG.2018.2864850. [PMID: 30334795 PMCID: PMC6898768 DOI: 10.1109/tvcg.2018.2864850] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Adaptive mesh refinement (AMR) is a key technology for large-scale simulations that allows for adaptively changing the simulation mesh resolution, resulting in significant computational and storage savings. However, visualizing such AMR data poses a significant challenge due to the difficulties introduced by the hierarchical representation when reconstructing continuous field values. In this paper, we detail a comprehensive solution for interactive isosurface rendering of block-structured AMR data. We contribute a novel reconstruction strategy-the octant method-which is continuous, adaptive and simple to implement. Furthermore, we present a generally applicable hybrid implicit isosurface ray-tracing method, which provides better rendering quality and performance than the built-in sampling-based approach in OSPRay. Finally, we integrate our octant method and hybrid isosurface geometry into OSPRay as a module, providing the ability to create high-quality interactive visualizations combining volume and isosurface representations of BS-AMR data. We evaluate the rendering performance, memory consumption and quality of our method on two gigascale block-structured AMR datasets.
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A Simulation Study Using Terrestrial LiDAR Point Cloud Data to Quantify Spectral Variability of a Broad-Leaved Forest Canopy. SENSORS 2018; 18:s18103357. [PMID: 30297651 PMCID: PMC6210772 DOI: 10.3390/s18103357] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2018] [Revised: 09/16/2018] [Accepted: 09/17/2018] [Indexed: 11/16/2022]
Abstract
In this analysis, a method for construction of forest canopy three-dimensional (3D) models from terrestrial LiDAR was used for assessing the influence of structural changes on reflectance for an even-aged forest in Belgium. The necessary data were extracted by the developed method, as well as it was registered the adjacent point-clouds, and the canopy elements were classified. Based on a voxelized approach, leaf area index (LAI) and the vertical distribution of leaf area density (LAD) of the forest canopy were derived. Canopy–radiation interactions were simulated in a ray tracing environment, giving suitable illumination properties and optical attributes of the different canopy elements. Canopy structure was modified in terms of LAI and LAD for hyperspectral measurements. It was found that the effect of a 10% increase in LAI on NIR reflectance can be equal to change caused by translating 50% of leaf area from top to lower layers. As presented, changes in structure did affect vegetation indices associated with LAI and chlorophyll content. Overall, the work demonstrated the ability of terrestrial LiDAR for detailed canopy assessments and revealed the high complexity of the relationship between vertical LAD and reflectance.
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Lin J, Kan Y, Jing X, Lu M. Design and Fabrication of a Three-Dimensional Artificial Compound Eye Using Two-Photon Polymerization. MICROMACHINES 2018; 9:E336. [PMID: 30424269 PMCID: PMC6082293 DOI: 10.3390/mi9070336] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Revised: 06/21/2018] [Accepted: 06/25/2018] [Indexed: 01/14/2023]
Abstract
Microlens arrays have been widely used in the fields of micro-optics because of the advantages of their high diffraction efficiency, high fill factor, and wide operating band. However, the microlens array still has problems with its smaller field of view (FOV) and lower utilization of light energy. In this paper, a 3D compound eye system consisting of a microlens array and a pinhole array was designed according to the optical principle of insect compound eye. The artificial compound eye structure was processed in two-photon polymerization processing technology. Ray tracing and optical system simulation of the designed artificial compound eye structure were performed. The results showed that the artificial compound eye structure had a wider FOV and higher light energy utilization than a conventional 2D microlens array. This thesis may lay a theoretical foundation for the structural optimization design of microlens arrays.
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Zoller CJ, Hohmann A, Foschum F, Geiger S, Geiger M, Ertl TP, Kienle A. Parallelized Monte Carlo software to efficiently simulate the light propagation in arbitrarily shaped objects and aligned scattering media. JOURNAL OF BIOMEDICAL OPTICS 2018; 23:1-12. [PMID: 29935015 DOI: 10.1117/1.jbo.23.6.065004] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 06/01/2018] [Indexed: 05/23/2023]
Abstract
A GPU-based Monte Carlo software (MCtet) was developed to calculate the light propagation in arbitrarily shaped objects, like a human tooth, represented by a tetrahedral mesh. A unique feature of MCtet is a concept to realize different kinds of light-sources illuminating the complex-shaped surface of an object, for which no preprocessing step is needed. With this concept, it is also possible to consider photons leaving a turbid media and reentering again in case of a concave object. The correct implementation was shown by comparison with five other Monte Carlo software packages. A hundredfold acceleration compared with central processing units-based programs was found. MCtet can simulate anisotropic light propagation, e.g., by accounting for scattering at cylindrical structures. The important influence of the anisotropic light propagation, caused, e.g., by the tubules in human dentin, is shown for the transmission spectrum through a tooth. It was found that the sensitivity to a change in the oxygen saturation inside the pulp for transmission spectra is much larger if the tubules are considered. Another "light guiding" effect based on a combination of a low scattering and a high refractive index in enamel is described.
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Li Z, Li B. A sagittally confined high-resolution spectrometer in the `water window'. JOURNAL OF SYNCHROTRON RADIATION 2018; 25:738-747. [PMID: 29714183 PMCID: PMC5929356 DOI: 10.1107/s160057751800468x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2017] [Accepted: 03/22/2018] [Indexed: 06/08/2023]
Abstract
The authors report a novel scheme for a grazing-incidence spectrometer forming an excellent meridional flat field in its detector domain to deliver the desired spectral resolution throughout the full designated spectral range, while reducing the sagittal astigmatism substantially to enhance the spectral intensity. The optical properties of the system are thoroughly investigated and optimized, and the detector plane is fitted well to the meridional or sagittal focal curves. The authors demonstrated that a resolving power of 6000-18000 could be achieved within the `water window' (2-5 nm) for an effective meridional source size of 200 µm (r.m.s.), and it would be further improved to 20000-40000 if the source size was confined to 50 µm (r.m.s.).
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Sun Y, Zhang T, Zheng D. New Analysis Scheme of Flow-Acoustic Coupling for Gas Ultrasonic Flowmeter with Vortex near the Transducer. SENSORS 2018; 18:s18041151. [PMID: 29642577 PMCID: PMC5948778 DOI: 10.3390/s18041151] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Revised: 03/31/2018] [Accepted: 04/05/2018] [Indexed: 11/16/2022]
Abstract
Ultrasonic flowmeters with a small or medium diameter are widely used in process industries. The flow field disturbance on acoustic propagation caused by a vortex near the transducer inside the sensor as well as the mechanism and details of flow-acoustic interaction are needed to strengthen research. For that reason, a new hybrid scheme is proposed; the theories of computational fluid dynamics (CFD), wave acoustics, and ray acoustics are used comprehensively by a new step-by-step method. The flow field with a vortex near the transducer, and its influence on sound propagation, receiving, and flowmeter performance are analyzed in depth. It was found that, firstly, the velocity and vortex intensity distribution were asymmetric on the sensor cross-section and acoustic path. Secondly, when passing through the vortex zone, the central ray trajectory was deflected significantly. The sound pressure on the central line of the sound path also changed. Thirdly, the pressure deviation becomes larger with as the flow velocity increases. The deviation was up to 17% for different velocity profiles in a range of 0.6 m/s to 53 m/s. Lastly, in comparison to the theoretical value, the relative deviation of the instrument coefficient for the velocity profile with a vortex near the transducer reached up to −17%. In addition, the rationality of the simulation was proved by experiments.
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Morsdorf F, Kükenbrink D, Schneider FD, Abegg M, Schaepman ME. Close-range laser scanning in forests: towards physically based semantics across scales. Interface Focus 2018; 8:20170046. [PMID: 29503725 DOI: 10.1098/rsfs.2017.0046] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/11/2017] [Indexed: 11/12/2022] Open
Abstract
Laser scanning with its unique measurement concept holds the potential to revolutionize the way we assess and quantify three-dimensional vegetation structure. Modern laser systems used at close range, be it on terrestrial, mobile or unmanned aerial platforms, provide dense and accurate three-dimensional data whose information just waits to be harvested. However, the transformation of such data to information is not as straightforward as for airborne and space-borne approaches, where typically empirical models are built using ground truth of target variables. Simpler variables, such as diameter at breast height, can be readily derived and validated. More complex variables, e.g. leaf area index, need a thorough understanding and consideration of the physical particularities of the measurement process and semantic labelling of the point cloud. Quantified structural models provide a framework for such labelling by deriving stem and branch architecture, a basis for many of the more complex structural variables. The physical information of the laser scanning process is still underused and we show how it could play a vital role in conjunction with three-dimensional radiative transfer models to shape the information retrieval methods of the future. Using such a combined forward and physically based approach will make methods robust and transferable. In addition, it avoids replacing observer bias from field inventories with instrument bias from different laser instruments. Still, an intensive dialogue with the users of the derived information is mandatory to potentially re-design structural concepts and variables so that they profit most of the rich data that close-range laser scanning provides.
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Dziarzhytski S, Siewert F, Sokolov A, Gwalt G, Seliger T, Rübhausen M, Weigelt H, Brenner G. Diffraction gratings metrology and ray-tracing results for an XUV Raman spectrometer at FLASH. JOURNAL OF SYNCHROTRON RADIATION 2018; 25:138-144. [PMID: 29271763 PMCID: PMC5741130 DOI: 10.1107/s1600577517013066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Accepted: 09/12/2017] [Indexed: 06/07/2023]
Abstract
The extreme-ultraviolet double-stage imaging Raman spectrometer is a permanent experimental endstation at the plane-grating monochromator beamline branch PG1 at FLASH at DESY in Hamburg, Germany. This unique instrument covers the photon energy range from 20 to 200 eV with high energy resolution of about 2 to 20 meV (design values) featuring an efficient elastic line suppression as well as effective stray light rejection. Such a design enables studies of low-energy excitations like, for example, phonons in solids close to the vicinity of the elastic line. The Raman spectrometer effectively operates with four reflective off-axial parabolic mirrors and two plane-grating units. The optics quality and their precise alignment are crucial to guarantee best performance of the instrument. Here, results on a comprehensive investigation of the quality of the spectrometer diffraction gratings are presented. The gratings have been characterized by ex situ metrology at the BESSY-II Optics Laboratory, employing slope measuring deflectometry and interferometry as well as atomic force microscopy studies. The efficiency of these key optical elements has been measured at the at-wavelength metrology laboratory using the reflectometer at the BESSY-II Optics beamline. Also, the metrology results are discussed with respect to the expected resolving power of the instrument by including them in ray-tracing studies of the instrument.
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Matenine D, Côté G, Mascolo-Fortin J, Goussard Y, Després P. System matrix computation vs storage on GPU: A comparative study in cone beam CT. Med Phys 2017; 45:579-588. [PMID: 29214631 DOI: 10.1002/mp.12714] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2017] [Revised: 11/01/2017] [Accepted: 11/19/2017] [Indexed: 11/10/2022] Open
Abstract
PURPOSE Iterative reconstruction algorithms in computed tomography (CT) require a fast method for computing the intersection distances between the trajectories of photons and the object, also called ray tracing or system matrix computation. This work focused on the thin-ray model is aimed at comparing different system matrix handling strategies using graphical processing units (GPUs). METHODS In this work, the system matrix is modeled by thin rays intersecting a regular grid of box-shaped voxels, known to be an accurate representation of the forward projection operator in CT. However, an uncompressed system matrix exceeds the random access memory (RAM) capacities of typical computers by one order of magnitude or more. Considering the RAM limitations of GPU hardware, several system matrix handling methods were compared: full storage of a compressed system matrix, on-the-fly computation of its coefficients, and partial storage of the system matrix with partial on-the-fly computation. These methods were tested on geometries mimicking a cone beam CT (CBCT) acquisition of a human head. Execution times of three routines of interest were compared: forward projection, backprojection, and ordered-subsets convex (OSC) iteration. RESULTS A fully stored system matrix yielded the shortest backprojection and OSC iteration times, with a 1.52× acceleration for OSC when compared to the on-the-fly approach. Nevertheless, the maximum problem size was bound by the available GPU RAM and geometrical symmetries. On-the-fly coefficient computation did not require symmetries and was shown to be the fastest for forward projection. It also offered reasonable execution times of about 176.4 ms per view per OSC iteration for a detector of 512 × 448 pixels and a volume of 3843 voxels, using commodity GPU hardware. Partial system matrix storage has shown a performance similar to the on-the-fly approach, while still relying on symmetries. CONCLUSION Partial system matrix storage was shown to yield the lowest relative performance. On-the-fly ray tracing was shown to be the most flexible method, yielding reasonable execution times. A fully stored system matrix allowed for the lowest backprojection and OSC iteration times and may be of interest for certain performance-oriented applications.
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Feng M, Jia X, Wang J, Feng S, Zheng T. Global Calibration of Multi-Cameras Based on Refractive Projection and Ray Tracing. SENSORS 2017; 17:s17112494. [PMID: 29088072 PMCID: PMC5713033 DOI: 10.3390/s17112494] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2017] [Revised: 10/25/2017] [Accepted: 10/26/2017] [Indexed: 11/16/2022]
Abstract
Multi-camera systems are widely applied in the three dimensional (3D) computer vision, especially when multiple cameras are distributed on both sides of the measured object. The calibration methods of multi-camera systems are critical to the accuracy of vision measurement and the key is to find an appropriate calibration target. In this paper, a high-precision camera calibration method for multi-camera systems based on transparent glass checkerboards and ray tracing is described, and is used to calibrate multiple cameras distributed on both sides of the glass checkerboard. Firstly, the intrinsic parameters of each camera are obtained by Zhang’s calibration method. Then, multiple cameras capture several images from the front and back of the glass checkerboard with different orientations, and all images contain distinct grid corners. As the cameras on one side are not affected by the refraction of glass checkerboard, extrinsic parameters can be directly calculated. However, the cameras on the other side are influenced by the refraction of glass checkerboard, and the direct use of projection model will produce a calibration error. A multi-camera calibration method using refractive projection model and ray tracing is developed to eliminate this error. Furthermore, both synthetic and real data are employed to validate the proposed approach. The experimental results of refractive calibration show that the error of the 3D reconstruction is smaller than 0.2 mm, the relative errors of both rotation and translation are less than 0.014%, and the mean and standard deviation of reprojection error of the four-camera system are 0.00007 and 0.4543 pixels, respectively. The proposed method is flexible, highly accurate, and simple to carry out.
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Ng A, Si D. Beta-Barrel Detection for Medium Resolution Cryo-Electron Microscopy Density Maps Using Genetic Algorithms and Ray Tracing. J Comput Biol 2017; 25:326-336. [PMID: 29035579 DOI: 10.1089/cmb.2017.0155] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Cryo-electron microscopy (cryo-EM) is a technique that produces three-dimensional density maps of large protein complexes. This allows for the study of the structure of these proteins. Identifying the secondary structures within proteins is vital to understanding the overall structure and function of the protein. The [Formula: see text]-barrel is one such secondary structure, commonly found in lipocalins and membrane proteins. In this article, we present a novel approach that utilizes genetic algorithms, kd-trees, and ray tracing to automatically detect and extract [Formula: see text]-barrels from cryo-EM density maps. This approach was tested on simulated and experimental density maps with zero, one, or multiple barrels in the density map. The results suggest that the proposed approach is capable of performing automatic detection of [Formula: see text]-barrels from medium resolution cryo-EM density maps.
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Zhou C. Ray Tracing and Modal Methods for Modeling Radio Propagation in Tunnels With Rough Walls. IEEE TRANSACTIONS ON ANTENNAS AND PROPAGATION 2017; 65:2624-2634. [PMID: 28935995 PMCID: PMC5603257 DOI: 10.1109/tap.2017.2677398] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
At the ultrahigh frequencies common to portable radios, tunnels such as mine entries are often modeled by hollow dielectric waveguides. The roughness condition of the tunnel walls has an influence on radio propagation, and therefore should be taken into account when an accurate power prediction is needed. This paper investigates how wall roughness affects radio propagation in tunnels, and presents a unified ray tracing and modal method for modeling radio propagation in tunnels with rough walls. First, general analytical formulas for modeling the influence of the wall roughness are derived, based on the modal method and the ray tracing method, respectively. Second, the equivalence of the ray tracing and modal methods in the presence of wall roughnesses is mathematically proved, by showing that the ray tracing-based analytical formula can converge to the modal-based formula through the Poisson summation formula. The derivation and findings are verified by simulation results based on ray tracing and modal methods.
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Burgess AJ, Retkute R, Pound MP, Mayes S, Murchie EH. Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems. ANNALS OF BOTANY 2017; 119:517-532. [PMID: 28065926 PMCID: PMC5458713 DOI: 10.1093/aob/mcw242] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2016] [Accepted: 09/27/2016] [Indexed: 05/22/2023]
Abstract
Background and Aims Intercropping systems contain two or more species simultaneously in close proximity. Due to contrasting features of the component crops, quantification of the light environment and photosynthetic productivity is extremely difficult. However it is an essential component of productivity. Here, a low-tech but high-resolution method is presented that can be applied to single- and multi-species cropping systems to facilitate characterization of the light environment. Different row layouts of an intercrop consisting of Bambara groundnut ( Vigna subterranea ) and proso millet ( Panicum miliaceum ) have been used as an example and the new opportunities presented by this approach have been analysed. Methods Three-dimensional plant reconstruction, based on stereo cameras, combined with ray tracing was implemented to explore the light environment within the Bambara groundnut-proso millet intercropping system and associated monocrops. Gas exchange data were used to predict the total carbon gain of each component crop. Key Results The shading influence of the tall proso millet on the shorter Bambara groundnut results in a reduction in total canopy light interception and carbon gain. However, the increased leaf area index (LAI) of proso millet, higher photosynthetic potential due to the C4 pathway and sub-optimal photosynthetic acclimation of Bambara groundnut to shade means that increasing the number of rows of millet will lead to greater light interception and carbon gain per unit ground area, despite Bambara groundnut intercepting more light per unit leaf area. Conclusions Three-dimensional reconstruction combined with ray tracing provides a novel, accurate method of exploring the light environment within an intercrop that does not require difficult measurements of light interception and data-intensive manual reconstruction, especially for such systems with inherently high spatial possibilities. It provides new opportunities for calculating potential productivity within multi-species cropping systems, enables the quantification of dynamic physiological differences between crops grown as monoculture and those within intercrops, and enables the prediction of new productive combinations of previously untested crops.
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Rebuffi L, Sánchez del Río M. ShadowOui: a new visual environment for X-ray optics and synchrotron beamline simulations. JOURNAL OF SYNCHROTRON RADIATION 2016; 23:1357-1367. [PMID: 27787241 PMCID: PMC5298219 DOI: 10.1107/s1600577516013837] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2016] [Accepted: 08/29/2016] [Indexed: 05/14/2023]
Abstract
A new computer environment to perform simulations on synchrotron experiments has been designed. It performs ray-tracing simulations using the popular ray-tracing code SHADOW. With this new application one can define, in a very easy and elegant way, one or several optical systems (beamlines) and perform calculations of the propagation of the X-ray beam through it. Many complementary tools and supplementary calculations improve and extend the functionality of SHADOW to deal with complex optical system optimization, including compound optical elements, iterative calculations, some sample simulations, and implementing corrections for wave optics via a hybrid model.
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Channel Measurement and Modeling for 5G Urban Microcellular Scenarios. SENSORS 2016; 16:s16081330. [PMID: 27556462 PMCID: PMC5017494 DOI: 10.3390/s16081330] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Revised: 08/08/2016] [Accepted: 08/15/2016] [Indexed: 11/20/2022]
Abstract
In order to support the development of channel models for higher frequency bands, multiple urban microcellular measurement campaigns have been carried out in Berlin, Germany, at 60 and 10 GHz. In this paper, the collected data is uniformly analyzed with focus on the path loss (PL) and the delay spread (DS). It reveals that the ground reflection has a dominant impact on the fading behavior. For line-of-sight conditions, the PL exponents are close to free space propagation at 60 GHz, but slightly smaller (1.62) for the street canyon at 10 GHz. The DS shows a clear dependence on the scenario (median values between 16 and 38 ns) and a strong distance dependence for the open square and the wide street canyon. The dependence is less distinct for the narrow street canyon with residential buildings. This behavior is consistent with complementary ray tracing simulations, though the simplified model tends to overestimate the DS.
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Keelan R, Shimada K, Rabin Y. GPU-Based Simulation of Ultrasound Imaging Artifacts for Cryosurgery Training. Technol Cancer Res Treat 2016; 16:5-14. [PMID: 26818026 DOI: 10.1177/1533034615623062] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
This study presents an efficient computational technique for the simulation of ultrasound imaging artifacts associated with cryosurgery based on nonlinear ray tracing. This study is part of an ongoing effort to develop computerized training tools for cryosurgery, with prostate cryosurgery as a development model. The capability of performing virtual cryosurgical procedures on a variety of test cases is essential for effective surgical training. Simulated ultrasound imaging artifacts include reverberation and reflection of the cryoprobes in the unfrozen tissue, reflections caused by the freezing front, shadowing caused by the frozen region, and tissue property changes in repeated freeze-thaw cycles procedures. The simulated artifacts appear to preserve the key features observed in a clinical setting. This study displays an example of how training may benefit from toggling between the undisturbed ultrasound image, the simulated temperature field, the simulated imaging artifacts, and an augmented hybrid presentation of the temperature field superimposed on the ultrasound image. The proposed method is demonstrated on a graphic processing unit at 100 frames per second, on a mid-range personal workstation, at two orders of magnitude faster than a typical cryoprocedure. This performance is based on computation with C++ accelerated massive parallelism and its interoperability with the DirectX-rendering application programming interface.
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71
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Zhou C, Jacksha R. Modeling and Measurement of Radio Propagation in Tunnel Environments. IEEE ANTENNAS AND WIRELESS PROPAGATION LETTERS 2016; 16:1431-1434. [PMID: 28603458 PMCID: PMC5464613 DOI: 10.1109/lawp.2016.2561903] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
A simple radio frequency (RF) testing system that can be conveniently built and used for measuring radio propagation in tunnels is introduced. With the proposed testing system, RF power attenuation with distance in a train tunnel was measured at four frequencies (455, 915, 2450, and 5800 MHz) for both horizontal and vertical polarizations. Two analytical modeling methods-the ray tracing and modal methods-are applied to model RF propagation in the tunnel. The theoretical predictions based on both methods are compared to field measurements and find good agreement.
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72
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Stone JE, Sherman WR, Schulten K. Immersive Molecular Visualization with Omnidirectional Stereoscopic Ray Tracing and Remote Rendering. IEEE INTERNATIONAL SYMPOSIUM ON PARALLEL & DISTRIBUTED PROCESSING, WORKSHOPS AND PHD FORUM : [PROCEEDINGS]. IEEE INTERNATIONAL SYMPOSIUM ON PARALLEL & DISTRIBUTED PROCESSING, WORKSHOPS AND PHD FORUM 2016; 2016:1048-1057. [PMID: 27747138 PMCID: PMC5063251 DOI: 10.1109/ipdpsw.2016.121] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/01/2023]
Abstract
Immersive molecular visualization provides the viewer with intuitive perception of complex structures and spatial relationships that are of critical interest to structural biologists. The recent availability of commodity head mounted displays (HMDs) provides a compelling opportunity for widespread adoption of immersive visualization by molecular scientists, but HMDs pose additional challenges due to the need for low-latency, high-frame-rate rendering. State-of-the-art molecular dynamics simulations produce terabytes of data that can be impractical to transfer from remote supercomputers, necessitating routine use of remote visualization. Hardware-accelerated video encoding has profoundly increased frame rates and image resolution for remote visualization, however round-trip network latencies would cause simulator sickness when using HMDs. We present a novel two-phase rendering approach that overcomes network latencies with the combination of omnidirectional stereoscopic progressive ray tracing and high performance rasterization, and its implementation within VMD, a widely used molecular visualization and analysis tool. The new rendering approach enables immersive molecular visualization with rendering techniques such as shadows, ambient occlusion lighting, depth-of-field, and high quality transparency, that are particularly helpful for the study of large biomolecular complexes. We describe ray tracing algorithms that are used to optimize interactivity and quality, and we report key performance metrics of the system. The new techniques can also benefit many other application domains.
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73
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Gao P, Wu L. Non-singular acoustic cloak derived by the ray tracing method with rotationally symmetric transformations. Proc Math Phys Eng Sci 2016; 472:20150348. [PMID: 27118884 DOI: 10.1098/rspa.2015.0348] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Recently, the ray tracing method has been used to derive the non-singular cylindrical invisibility cloaks for out-of-plane shear waves, which is impossible via the transformation method directly owing to the singular push-forward mapping. In this paper, the method is adopted to design a kind of non-singular acoustic cloak. Based on Hamilton's equations of motion, eikonal equation and pre-designed ray equations, we derive several constraint equations for bulk modulus and density tensor. On the premise that the perfect matching conditions are satisfied, a series of non-singular physical profiles can be obtained by arranging the singular terms reasonably. The physical profiles derived by the ray tracing method will degenerate to the transformation-based solutions when taking the transport equation into consideration. This illuminates the essence of the newly designed cloaks that they are actually the so-called eikonal cloaks that can accurately control the paths of energy flux but with small disturbance in energy distribution along the paths. The near-perfect invisible performance has been demonstrated by the numerical ray tracing results and the pressure distribution snapshots. Finally, a kind of reduced cloak is conceived, and the good invisible performance has been measured quantitatively by the normalized scattering width.
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Taylor GJ, Ribi W, Bech M, Bodey AJ, Rau C, Steuwer A, Warrant EJ, Baird E. The Dual Function of Orchid Bee Ocelli as Revealed by X-Ray Microtomography. Curr Biol 2016; 26:1319-24. [PMID: 27112298 DOI: 10.1016/j.cub.2016.03.038] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Revised: 02/17/2016] [Accepted: 03/14/2016] [Indexed: 11/25/2022]
Abstract
Visually guided flight control in the rainforest is arguably one of the most complex insect behaviors: illumination varies dramatically depending on location [1], and the densely cluttered environment blocks out most of the sky [2]. What visual information do insects sample for flight control in this habitat? To begin answering this question, we determined the visual fields of the ocelli-thought to play a role in attitude stabilization of some flying insects [3-5]-of an orchid bee, Euglossa imperialis. High-resolution 3D models of the ocellar system from X-ray microtomography were used for optical ray tracing simulations. Surprisingly, these showed that each ocellus possesses two distinct visual fields-a focused monocular visual field suitable for detecting features elevated above the horizon and therefore assisting with flight stabilization [3-5] and, unlike other ocelli investigated to date [4, 6, 7], a large trinocular fronto-dorsal visual field shared by all ocelli. Histological analyses show that photoreceptors have similar orientations within each ocellus and are likely to be sensitive to polarized light, as in some other hymenopterans [7, 8]. We also found that the average receptor orientation is offset between the ocelli, each having different axes of polarization sensitivity relative to the head. Unlike the eyes of any other insect described to date, this ocellar system meets the requirements of a true polarization analyzer [9, 10]. The ocelli of E. imperialis could provide sensitive compass information for navigation in the rainforest and, additionally, provide cues for visual discrimination or flight control.
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Development of a Tomography Technique for Assessment of the Material Condition of Concrete Using Optimized Elastic Wave Parameters. MATERIALS 2016; 9:ma9040291. [PMID: 28773416 PMCID: PMC5502984 DOI: 10.3390/ma9040291] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2015] [Revised: 04/06/2016] [Accepted: 04/07/2016] [Indexed: 11/17/2022]
Abstract
Concrete is the most ubiquitous construction material. Apart from the fresh and early age properties of concrete material, its condition during the structure life span affects the overall structural performance. Therefore, development of techniques such as non-destructive testing which enable the investigation of the material condition, are in great demand. Tomography technique has become an increasingly popular non-destructive evaluation technique for civil engineers to assess the condition of concrete structures. In the present study, this technique is investigated by developing reconstruction procedures utilizing different parameters of elastic waves, namely the travel time, wave amplitude, wave frequency, and Q-value. In the development of algorithms, a ray tracing feature was adopted to take into account the actual non-linear propagation of elastic waves in concrete containing defects. Numerical simulation accompanied by experimental verifications of wave motion were conducted to obtain wave propagation profiles in concrete containing honeycomb as a defect and in assessing the tendon duct filling of pre-stressed concrete (PC) elements. The detection of defects by the developed tomography reconstruction procedures was evaluated and discussed.
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