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Rasmussen G, Smultea M, Cloutier T, Giordano A, Kaplin B, Willey L. Quantitative photogrammetric methodology for measuring mammalian belly score in the painted dog. PLoS One 2021; 16:e0261171. [PMID: 34905569 PMCID: PMC8670687 DOI: 10.1371/journal.pone.0261171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2021] [Accepted: 11/24/2021] [Indexed: 11/19/2022] Open
Abstract
The use of "belly scoring" can offer a novel, non-invasive objective management tool to gauge food intake between individuals, groups, and populations, and thus, population fitness. As food availability is increasingly affected by predation, ecological competition, climate change, habitat modification, and other human activities, an accurate belly scoring tool can facilitate comparisons among wildlife populations, serving as an early warning indicator of threats to wildlife population health and potential population collapse. In social species, belly scores can also be a tool to understand social behavior and ranking. We developed and applied the first rigorous quantitative photogrammetric methodology to measure belly scores of wild painted dogs (Lycaon pictus). Our methodology involves: (1) Rigorous selection of photographs of the dorso/lateral profile of individuals at a right angle to the camera, (2) photogrammetrically measuring belly chord length and "belly drop" in pixels, (3) adjusting belly chord length as a departure from a standardized leg angle, and (4) converting pixel measurements to ratios to eliminate the need to introduce distance from the camera. To highlight a practical application, this belly score method was applied to 631 suitable photographs of 15 painted dog packs that included 186 individuals, all collected between 2004-2015 from allopatric painted dog populations in and around Hwange (n = 462) and Mana Pools National Parks (n = 169) in Zimbabwe. Variation in mean belly scores exhibited a cyclical pattern throughout the year, corresponding to biologically significant patterns to include denning demand and prey availability. Our results show significant differences between belly scores of the two different populations we assessed, thus highlighting food stress in the Hwange population. In the face of growing direct and indirect anthropogenic disturbances, this standardised methodology can provide a rapid, species-specific non-invasive management tool that can be applied across studies to rapidly detect emergent threats.
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Marrinan T, Papka ME. Real-Time Omnidirectional Stereo Rendering: Generating 360° Surround-View Panoramic Images for Comfortable Immersive Viewing. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS 2021; 27:2587-2596. [PMID: 33750708 DOI: 10.1109/tvcg.2021.3067780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Surround-view panoramic images and videos have become a popular form of media for interactive viewing on mobile devices and virtual reality headsets. Viewing such media provides a sense of immersion by allowing users to control their view direction and experience an entire environment. When using a virtual reality headset, the level of immersion can be improved by leveraging stereoscopic capabilities. Stereoscopic images are generated in pairs, one for the left eye and one for the right eye, and result in providing an important depth cue for the human visual system. For computer generated imagery, rendering proper stereo pairs is well known for a fixed view. However, it is much more difficult to create omnidirectional stereo pairs for a surround-view projection that work well when looking in any direction. One major drawback of traditional omnidirectional stereo images is that they suffer from binocular misalignment in the peripheral vision as a user's view direction approaches the zenith / nadir (north / south pole) of the projection sphere. This paper presents a real-time geometry-based approach for omnidirectional stereo rendering that fits into the standard rendering pipeline. Our approach includes tunable parameters that enable pole merging - a reduction in the stereo effect near the poles that can minimize binocular misalignment. Results from a user study indicate that pole merging reduces visual fatigue and discomfort associated with binocular misalignment without inhibiting depth perception.
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Shaheen E, Willaert R, Miclotte I, Coropciuc R, Bila M, Politis C. A novel fully automatic design approach of a 3D printed face specific mask: Proof of concept. PLoS One 2020; 15:e0243388. [PMID: 33270772 PMCID: PMC7720797 DOI: 10.1371/journal.pone.0243388] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Accepted: 11/20/2020] [Indexed: 11/30/2022] Open
Abstract
The use of high quality facemasks is indispensable in the light of the current COVID
pandemic. This study proposes a fully automatic technique to design a face specific mask.
Through the use of stereophotogrammetry, computer-assisted design and three-dimensional
(3D) printing, we describe a protocol for manufacturing facemasks perfectly adapted to the
individual face characteristics. The face specific mask was compared to a universal design
of facemask and different filter container’s designs were merged with the mask body.
Subjective assessment of the face specific mask demonstrated tight closure at the nose,
mouth and chin area, and permits the normal wearing of glasses. A screw-drive locking
system is advised for easy assembly of the filter components. Automation of the process
enables high volume production but still allows sufficient designer interaction to answer
specific requirements. The suggested protocol can be used to provide more comfortable,
effective and sustainable solution compared to a single use, standardized mask. Subsequent
research on printing materials, sterilization technique and compliance with international
regulations will facilitate the introduction of the face specific mask in clinical
practice as well as for general use.
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Medina JJ, Maley JM, Sannapareddy S, Medina NN, Gilman CM, McCormack JE. A rapid and cost-effective pipeline for digitization of museum specimens with 3D photogrammetry. PLoS One 2020; 15:e0236417. [PMID: 32790700 PMCID: PMC7425849 DOI: 10.1371/journal.pone.0236417] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 07/06/2020] [Indexed: 01/06/2023] Open
Abstract
Natural history collections are yielding more information as digitization brings specimen data to researchers, connects specimens across museums, and as new technologies allow for more large-scale data collection. Therefore, a key goal in specimen digitization is developing methods that both increase access and allow for the highest yield of phenomic data. 3D digitization is increasingly popular because it has the potential to meet both aspects of that key goal. However, current methods overlook or do not prioritize some of the most sought-after phenotypic traits, those involving the external appearance of specimens, especially color. Here, we introduce an efficient and cost-effective pipeline for 3D photogrammetry to capture the external appearance of natural history specimens and other museum objects. 3D photogrammetry aligns and compares sets of dozens, hundreds, or even thousands of photos to create 3D models. The hardware set-up requires little physical space and around $3,000 in initial investment, while the software pipeline requires $1,400/year for proprietary software subscriptions (with open-source alternatives). The creation of each 3D model takes 1-2 hours/specimen and much of the software pipeline is automated with minimal supervision required, including the onerous step of mesh processing. We showcase the method by creating 3D models for most of the type specimens in the Moore Laboratory of Zoology bird collection and show that digital bill measurements are comparable to hand-taken measurements. Color data, while not included as part of this pipeline, is easily extractable from the models and one of the most promising areas of data collection. Future advances can adapt the method for ultraviolet reflectance capture and increased efficiency and model quality. Combined with genomic data, phenomic data from 3D models including photogrammetry will open new doors to understanding organismal evolution.
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Chu G, Zhao JM, Han MQ, Mou QN, Ji LL, Zhou H, Chen T, Du SY, Guo YC. Three-dimensional prediction of nose morphology in Chinese young adults: a pilot study combining cone-beam computed tomography and 3dMD photogrammetry system. Int J Legal Med 2020; 134:1803-1816. [PMID: 32647961 DOI: 10.1007/s00414-020-02351-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 06/18/2020] [Indexed: 11/25/2022]
Abstract
The nose is the most prominent part of the face and is a crucial factor for facial esthetics as well as facial reconstruction. Although some studies have explored the features of external nose and predicted the relationships between skeletal structures and soft tissues in the nasal region, the reliability and applicability of methods used in previous studies have not been reproduced. In addition, the majority of previous studies have focused on the sagittal direction, whereas the thickness of the soft tissues was rarely analyzed in three dimensions. A few studies have explained the specific characteristics of the nose of Chinese individuals. The aim of this study was to investigate the relationship between the hard nasal structures and soft external nose in three dimensions and to predict the morphology of the nose based on hard-tissue measurements. To eliminate the influence of low resolution of CBCT and increase the accuracy of measurement, three-dimensional (3D) images captured by cone-beam computed tomography (CBCT) and 3dMD photogrammetry system were used in this study. Twenty-six measurements (15 measurements for hard tissue and 11 measurements for soft tissue) based on 5 craniometric and 5 capulometric landmarks of the nose of 120 males and 120 females were obtained. All of the subjects were randomly divided into an experimental group (180 subjects consisting of 90 males and 90 females) and a test group (60 subjects consisting of 30 males and 30 females). Correlation coefficients between hard- and soft-tissue measurements were analyzed, and regression equations were obtained based on the experimental group and served as predictors to estimate nasal morphology in the test group. Most hard- and soft-tissue measurements appeared significantly different between genders. The strongest correlation was found between basis nasi protrusion and nasospinale protrusion (0.499) in males, and nasal height and nTr-nsTr (0.593) in females. For the regression equations, the highest value of R2 was observed in the nasal bridge length in males (0.257) and nasal tip protrusion in females (0.389). The proportion of subjects with predicted errors < 10% was over 86.7% in males and 70.0% in females. Our study proved that a combined CBCT and 3dMD photogrammetry system is a reliable method for nasal morphology estimation. Further research should investigate other influencing factors such as age, skeletal types, facial proportions, or population variance in nasal morphology estimation.
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Herrero-Tejedor TR, Arqués Soler F, López-Cuervo Medina S, de la O Cabrera MR, Martín Romero JL. Documenting a cultural landscape using point-cloud 3d models obtained with geomatic integration techniques. The case of the El Encín atomic garden, Madrid (Spain). PLoS One 2020; 15:e0235169. [PMID: 32579596 PMCID: PMC7314027 DOI: 10.1371/journal.pone.0235169] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Accepted: 06/09/2020] [Indexed: 01/18/2023] Open
Abstract
A country’s cultural landscapes are an important part of its heritage. The growing need to identify, catalogue and preserve these resources has led to a rapid change in the management and inventorying of heritage in general and of cultural landscapes in particular. The main aim of this work is to develop and apply an updated and integrated methodology for capturing and processing geo-information for the digital documentation of cultural heritage. The proposed case study is the atomic garden in the Finca El Encín (Madrid), a singular space with unique biogeographical features created over 60 years ago. The results of the case study validate the method, consisting of an unmanned aerial platform equipped with sensors to obtain point clouds and aerial images in conjunction with point clouds and images captured with a terrestrial laser scanner.
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Lussu P, Marini E. Ultra close-range digital photogrammetry in skeletal anthropology: A systematic review. PLoS One 2020; 15:e0230948. [PMID: 32240219 PMCID: PMC7117717 DOI: 10.1371/journal.pone.0230948] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 03/12/2020] [Indexed: 11/19/2022] Open
Abstract
Background Ultra close-range digital photogrammetry (UCR-DP) is emerging as a robust technique for 3D model generation and represents a convenient and low-cost solution for rapid data acquisition in virtual anthropology. Objectives This systematic review aims to analyse applications, technical implementation, and performance of UCR-DP in skeletal anthropology. Methods The PRISMA guidelines were applied to the study. The bibliographic search was performed on March 1st, 2019 using Scopus and MEDLINE databases to retrieve peer-reviewed studies accessible in English full-text. The authors worked independently to select the articles meeting inclusion criteria, upon discussion. Studies underwent to quantitative and qualitative syntheses. Results Twenty-six studies were selected. The majority appeared in 2016 or after and were focused on methodological aspects; the applications mainly dealt with the documentation of skeletal findings and the identification or comparison of anatomical features and trauma. Most authors used commercial software packages, and an offline approach. Research is still quite heterogeneous concerning methods, terminology and quality of results, and proper validation is still lacking. Conclusions UCR-DP has great potential in skeletal anthropology, with many significant advantages: versatility in terms of application range and technical implementation, scalability, and photorealistic restitution. Validation of the technique, and the application of the cloud-based approach, with its reduced requirements relating to hardware, labour, time, and cost, could further facilitate the sharing of large collections for research and communication purposes.
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White JD, Ortega-Castrillon A, Virgo C, Indencleef K, Hoskens H, Shriver MD, Claes P. Sources of variation in the 3dMDface and Vectra H1 3D facial imaging systems. Sci Rep 2020; 10:4443. [PMID: 32157192 PMCID: PMC7064576 DOI: 10.1038/s41598-020-61333-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Accepted: 02/17/2020] [Indexed: 12/21/2022] Open
Abstract
As technology advances and collaborations grow, our ability to finely quantify and explore morphological variation in 3D structures can enable important discoveries and insights into clinical, evolutionary, and genetic questions. However, it is critical to explore and understand the relative contribution of potential sources of error to the structures under study. In this study, we isolated the level of error in 3D facial images attributable to four sources, using the 3dMDface and Vectra H1 camera systems. When the two camera systems are used separately to image human participants, this analysis finds an upper bound of error potentially introduced by the use of the 3dMDface or Vectra H1 camera systems, in conjunction with the MeshMonk registration toolbox, at 0.44 mm and 0.40 mm, respectively. For studies using both camera systems, this upper bound increases to 0.85 mm, on average, and there are systematic differences in the representation of the eyelids, nostrils, and mouth by the two camera systems. Our results highlight the need for careful assessment of potential sources of error in 3D images, both in terms of magnitude and position, especially when dealing with very small measurements or performing many tests.
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Muneza AB, Ortiz-Calo W, Packer C, Cusack JJ, Jones T, Palmer MS, Swanson A, Kosmala M, Dickman AJ, Macdonald DW, Montgomery RA. QUANTIFYING THE SEVERITY OF GIRAFFE SKIN DISEASE VIA PHOTOGRAMMETRY ANALYSIS OF CAMERA TRAP DATA. J Wildl Dis 2019; 55:770-781. [PMID: 31009309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Developing techniques to quantify the spread and severity of diseases afflicting wildlife populations is important for disease ecology, animal ecology, and conservation. Giraffes (Giraffa camelopardalis) are in the midst of a dramatic decline, but it is not known whether disease is playing an important role in the broad-scale population reductions. A skin disorder referred to as giraffe skin disease (GSD) was recorded in 1995 in one giraffe population in Uganda. Since then, GSD has been detected in 13 populations in seven African countries, but good descriptions of the severity of this disease are not available. We photogrammetrically analyzed camera trap images from both Ruaha and Serengeti National parks in Tanzania to quantify GSD severity. Giraffe skin disease afflicts the limbs of giraffes in Tanzania, and we quantified severity by measuring the vertical length of the GSD lesion in relation to the total leg length. Applying the Jenks natural breaks algorithm to the lesion proportions that we derived, we classified individual giraffes into disease categories (none, mild, moderate, and severe). Scaling up to the population level, we predicted the proportion of the Ruaha and Serengeti giraffe populations with mild, moderate, and severe GSD. This study serves to demonstrate that camera traps presented an informative platform for examinations of skin disease ecology.
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Ortiz-Coder P, Sánchez-Ríos A. A Self-Assembly Portable Mobile Mapping System for Archeological Reconstruction Based on VSLAM-Photogrammetric Algorithm. SENSORS 2019; 19:s19183952. [PMID: 31547455 PMCID: PMC6766812 DOI: 10.3390/s19183952] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 08/29/2019] [Accepted: 09/09/2019] [Indexed: 11/16/2022]
Abstract
Three Dimensional (3D) models are widely used in clinical applications, geosciences, cultural heritage preservation, and engineering; this, together with new emerging needs such as building information modeling (BIM) develop new data capture techniques and devices with a low cost and reduced learning curve that allow for non-specialized users to employ it. This paper presents a simple, self-assembly device for 3D point clouds data capture with an estimated base price under €2500; furthermore, a workflow for the calculations is described that includes a Visual SLAM-photogrammetric threaded algorithm that has been implemented in C++. Another purpose of this work is to validate the proposed system in BIM working environments. To achieve it, in outdoor tests, several 3D point clouds were obtained and the coordinates of 40 points were obtained by means of this device, with data capture distances ranging between 5 to 20 m. Subsequently, those were compared to the coordinates of the same targets measured by a total station. The Euclidean average distance errors and root mean square errors (RMSEs) ranging between 12-46 mm and 8-33 mm respectively, depending on the data capture distance (5-20 m). Furthermore, the proposed system was compared with a commonly used photogrammetric methodology based on Agisoft Metashape software. The results obtained demonstrate that the proposed system satisfies (in each case) the tolerances of 'level 1' (51 mm) and 'level 2' (13 mm) for point cloud acquisition in urban design and historic documentation, according to the BIM Guide for 3D Imaging (U.S. General Services).
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Shintaku H, Yamaguchi M, Toru S, Kitagawa M, Hirokawa K, Yokota T, Uchihara T. Three-dimensional surface models of autopsied human brains constructed from multiple photographs by photogrammetry. PLoS One 2019; 14:e0219619. [PMID: 31291358 PMCID: PMC6619815 DOI: 10.1371/journal.pone.0219619] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Accepted: 06/27/2019] [Indexed: 12/14/2022] Open
Abstract
Virtual three-dimensional (3D) surface models of autopsied human brain hemispheres were constructed by integrating multiple two-dimensional (2D) photographs. To avoid gravity-dependent deformity, formalin-fixed hemispheres were placed on non-refractile, transparent acrylic plates, which allowed us to take 2D photographs from various different angles. Photogrammetric calculations using software (ReCap Pro cloud service, Autodesk, San Rafael, CA, USA) allowed us calculate the 3D surface of each brain hemisphere. Virtual brain models could be moved and rotated freely to allow smooth, seamless views from different angles and different magnifications. When viewing rotating 3D models on 2D screens, 3D aspects of the models were enhanced using motion parallax. Comparison of different brains using this method allowed us to identify disease-specific patterns of macroscopic atrophy, that were not apparent in conventional 2D photographs. For example, we observed frontal lobe atrophy in a progressive supranuclear palsy brain, and even more subtle atrophy in the superior temporal gyrus in amyotrophic lateral sclerosis-frontotemporal lobar degeneration. Thus, our method facilities recognition of gyral atrophy. In addition, it provides a much more powerful and suitable way of visualizing the overall appearance of the brain as a three-dimensional structure. Comparison of normal and diseased brains will allow us to associate different macroscopic changes in the brain to clinical manifestations of various diseases.
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Wesselius TS, Verhulst AC, Xi T, Ulrich DJO, Maal TJJ. Effect of skin tone on the accuracy of hybrid and passive stereophotogrammetry. J Plast Reconstr Aesthet Surg 2019; 72:1564-1569. [PMID: 31229406 DOI: 10.1016/j.bjps.2019.05.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Revised: 04/11/2019] [Accepted: 05/02/2019] [Indexed: 11/19/2022]
Abstract
BACKGROUND Three-dimensional (3D) surface images acquired from stereophotogrammetry are increasingly being used to plan or evaluate treatment by plastic surgeons. Stereophotogrammetry exists in active, passive, and hybrid forms. Active and hybrid stereophotogrammetry are believed to capture darker surfaces more accurately than passive stereophotogrammetry. The purpose of this study was to investigate whether skin tone has a clinically relevant effect on the accuracy of hybrid and passive stereophotogrammetry. MATERIALS AND METHODS Seven subjects with different skin tones were recruited. 3D-printed face and breast were spray-painted in six different colors, ranging from white to black. The skin tones and paint colors were objectified by measuring their melanin index. 3D photos of the subjects and 3D prints were acquired with hybrid and passive stereophotogrammetry. These 3D photos were matched with specialized software, and their geometric differences were calculated. RESULTS None of the 3D photos showed a clinically relevant mean inaccuracy. On the 3D prints, hybrid stereophotogrammetry resulted in a smaller standard deviation of the inaccuracies than passive stereophotogrammetry (0.20 ± 0.06 mm vs. 0.35 ± 0.07 mm, p < 0.001). Passive stereophotogrammetry yielded a correlation between the melanin index of the spray paint colors and the standard deviation of the inaccuracy (Pearson's R = 0.60, p = 0.04). On human subjects, no correlation or difference in standard deviation of the accuracy was found. CONCLUSION Skin tone does not influence the accuracy of hybrid and passive 3D stereophotogrammetry in a clinically relevant way.
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Filipović GL, Stojanović NM, Jovanović ID, Randjelović PJ, Ilić IR, Djordjević NS, Radulović NS. Differences in Angular Photogrammetric Soft-Tissue Facial Characteristics among Parents and Their Offspring. ACTA ACUST UNITED AC 2019; 55:medicina55050197. [PMID: 31126130 PMCID: PMC6571664 DOI: 10.3390/medicina55050197] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 04/02/2019] [Accepted: 05/17/2019] [Indexed: 11/16/2022]
Abstract
Background and objectives: The objective of this study was to determine if the angular photogrammetric analysis of soft-tissue characteristics can determine similarities between parents and their offspring in the Serbian population. Materials and Methods: A total of 15 families (52 participants) met the participation criteria of this study and their facial profile images were analyzed using the ImageJ software. Subjects were divided into groups of mothers and fathers and four groups of children (divided according to their age and gender). In total, twelve angular measurements were made on the standardized digital images of the profiles of the participants and the obtained data were compared using one-way ANOVA. Results: The obtained results showed that there were statistically significant differences in the values of the nasal and cervicomental angles, as well as the angle of the total facial convexity, between the group of fathers, on one side, and groups of male/female children, on the other. Conclusions: This work represents the first photogrammetric analysis of facial soft-tissue characteristics of children and adults in the Serbian population. The data suggest that there are much more similarities between the facial soft-tissue angles of fathers and their male offspring. Furthermore, mothers tend to have statistically insignificant differences in angle sizes, compared to both male and female offspring.
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Latoschik ME, Kern F, Stauffert JP, Bartl A, Botsch M, Lugrin JL. Not Alone Here?! Scalability and User Experience of Embodied Ambient Crowds in Distributed Social Virtual Reality. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS 2019; 25:2134-2144. [PMID: 30794185 DOI: 10.1109/tvcg.2019.2899250] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
This article investigates performance and user experience in Social Virtual Reality (SVR) targeting distributed, embodied, and immersive, face-to-face encounters. We demonstrate the close relationship between scalability, reproduction accuracy, and the resulting performance characteristics, as well as the impact of these characteristics on users co-located with larger groups of embodied virtual others. System scalability provides a variable number of co-located avatars and Al-controlled agents with a variety of different appearances, including realistic-looking virtual humans generated from photogrammetry scans. The article reports on how to meet the requirements of embodied SVR with today's technical off-the-shelf solutions and what to expect regarding features, performance, and potential limitations. Special care has been taken to achieve low latencies and sufficient frame rates necessary for reliable communication of embodied social signals. We propose a hybrid evaluation approach which coherently relates results from technical benchmarks to subjective ratings and which confirms required performance characteristics for the target scenario of larger distributed groups. A user-study reveals positive effects of an increasing number of co-located social companions on the quality of experience of virtual worlds, i.e., on presence, possibility of interaction, and co-presence. It also shows that variety in avatar/agent appearance might increase eeriness but might also stimulate an increased interest of participants about the environment.
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del-Campo-Sanchez A, Ballesteros R, Hernandez-Lopez D, Ortega JF, Moreno MA. Quantifying the effect of Jacobiasca lybica pest on vineyards with UAVs by combining geometric and computer vision techniques. PLoS One 2019; 14:e0215521. [PMID: 31009493 PMCID: PMC6476504 DOI: 10.1371/journal.pone.0215521] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 04/03/2019] [Indexed: 11/18/2022] Open
Abstract
With the increasing competitiveness in the vine market, coupled with the increasing need for sustainable use of resources, strategies for improving farm management are essential. One such effective strategy is the implementation of precision agriculture techniques. Using photogrammetric techniques, the digitalization of farms based on images acquired from unmanned aerial vehicles (UAVs) provides information that can assist in the improvement of farm management and decision-making processes. The objective of the present work is to quantify the impact of the pest Jacobiasca lybica on vineyards and to develop representative cartography of the severity of the infestation. To accomplish this work, computational vision algorithms based on an ANN (artificial neural network) combined with geometric techniques were applied to geomatic products using consumer-grade cameras in the visible spectra. The results showed that the combination of geometric and computational vision techniques with geomatic products generated from conventional RGB (red, green, blue) images improved image segmentation of the affected vegetation, healthy vegetation and ground. Thus, the proposed methodology using low-cost cameras is a more cost-effective application of UAVs compared with multispectral cameras. Moreover, the proposed method increases the accuracy of determining the impact of pests by eliminating the soil effects.
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Varela MR, Patrício AR, Anderson K, Broderick AC, DeBell L, Hawkes LA, Tilley D, Snape RTE, Westoby MJ, Godley BJ. Assessing climate change associated sea-level rise impacts on sea turtle nesting beaches using drones, photogrammetry and a novel GPS system. GLOBAL CHANGE BIOLOGY 2019; 25:753-762. [PMID: 30430701 DOI: 10.1111/gcb.14526] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Accepted: 10/23/2018] [Indexed: 05/05/2023]
Abstract
Climate change associated sea-level rise (SLR) is expected to have profound impacts on coastal areas, affecting many species, including sea turtles which depend on these habitats for egg incubation. Being able to accurately model beach topography using digital terrain models (DTMs) is therefore crucial to project SLR impacts and develop effective conservation strategies. Traditional survey methods are typically low-cost with low accuracy or high-cost with high accuracy. We present a novel combination of drone-based photogrammetry and a low-cost and portable real-time kinematic (RTK) GPS to create DTMs which are highly accurate (<10 cm error) and visually realistic. This methodology is ideal for surveying coastal sites, can be broadly applied to other species and habitats, and is a relevant tool in supporting the development of Specially Protected Areas. Here, we applied this method as a case-study to project three SLR scenarios (0.48, 0.63 and 1.20 m) and assess the future vulnerability and viability of a key nesting habitat for sympatric loggerhead (Caretta caretta) and green turtle (Chelonia mydas) at a key rookery in the Mediterranean. We combined the DTM with 5 years of nest survey data describing location and clutch depth, to identify (a) regions with highest nest densities, (b) nest elevation by species and beach, and (c) estimated proportion of nests inundated under each SLR scenario. On average, green turtles nested at higher elevations than loggerheads (1.8 m vs. 1.32 m, respectively). However, because green turtles dig deeper nests than loggerheads (0.76 m vs. 0.50 m, respectively), these were at similar risk of inundation. For a SLR of 1.2 m, we estimated a loss of 67.3% for loggerhead turtle nests and 59.1% for green turtle nests. Existing natural and artificial barriers may affect the ability of these nesting habitats to remain suitable for nesting through beach migration.
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Rizzo MI, Zadeh R, Bucci D, Palmieri A, Monarca C, Staderini E, Oliva G, Candida E, Gallenzi P, Cordaro M, Zama M. Volumetric analysis of cleft lip deformity using 3D stereophotogrammetry. Ann Ital Chir 2019; 90:281-286. [PMID: 31657355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
PURPOSE To quantify and compare pre-operative and post-operative volumetric adjustments of the upper lip tissues in patients with cleft lip. METHODS The authors performed an anthropometric study and a quantitative analysis of the differences based on three-dimensional morphology of the nasolabial area. Twenty facial images using the three-dimensional stereophotogrammetry were taken from ten selected subjects on two separate occasions, sitting in natural head position. Facial landmarks were marked and measurements recorded, in order to calculate the volumetric adjustments in the soft tissues of the upper lip, comparing the preoperative and postoperative results. Student test and p-Value were performed for statistical analysis. RESULTS The analysis of the 3D images showed variability with the pre- and postoperative volumes of the nasolabial area with: an increase of upper lip volume all patients; a complete view of the severity in the preoperative; and an improvement of the appearance in the postoperative. The amount of increase of the upper lip volume was established about 29,7%. For all measurements, the variability between pre- and post-operative was significant (p < 0.01). CONCLUSION The 3D stereophotogrammetry technique allows a detailed preoperative evaluation and an accurate assessment of the surgical outcomes. The study provides a value of volumetric variation of the upper lip in individuals with cleft lip. KEY WORDS Cleft lip, Nasolabial area, 3D Morphological Analysis, 3D Stereophotogrammetry, Upper lip volume.
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Ozdemir SA, Esenlik E. Three-Dimensional Soft-Tissue Evaluation in Patients with Cleft Lip and Palate. Med Sci Monit 2018; 24:8608-8620. [PMID: 30484438 PMCID: PMC6280618 DOI: 10.12659/msm.912305] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 08/13/2018] [Indexed: 11/09/2022] Open
Abstract
BACKGROUND In cleft lip and palate (CLP) patients, the shape of the facial soft tissues shows variety in 3 dimensions (3D). Two-dimensional (2D) photographs and radiographs are insufficient in the examination of these anomalies. The aim of this retrospective study was to examine the soft tissue and craniofacial characteristics of individuals with nonsyndromic unilateral cleft lip and palate (UCLP), bilateral cleft lip and palate (BCLP), skeletal Class III malocclusions, or skeletal Class I malocclusions using 3D facial imaging. MATERIAL AND METHODS The entire study group consisted of a total of 158 patients, aged 8-32 years: 29 of the patients had UCLP, 22 BCLP, 54 had skeletal Class III malocclusions, and 53 had skeletal Class I malocclusions. 3D stereophotogrammetric soft-tissue recordings of all patients were analyzed. ANOVA and the Kruskal-Wallis test were performed to compare the groups. RESULTS Statistically significant differences were observed among the groups in terms of linear, angular, proportional. and volumetric measurements. While nasal differences were not observed in the Class III group, nose and upper-lip deformities were common in the CLP groups. Upper-lip projection was reduced in all 3 groups. In the Class III patients, the lower lip and chin were more prominent than in the other groups. The facial convexity angle was increased in the CLP and Class III groups. The upper-lip volume was decreased in the BCLP, the UCLP, and the Class III groups. CONCLUSIONS Patients with skeletal Class III or CLP anomalies showed significantly different soft-tissue characteristics than the Class I control group. 3D stereophotogrammetric facial imaging is an easy and noninvasive method that can be used in examination and recording of these facial deformities. It is possible to make volumetric measurements using this method.
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Yue H, Yu Y, Chen W, Wu X. Accurate three dimensional body scanning system based on structured light. OPTICS EXPRESS 2018; 26:28544-28559. [PMID: 30470030 DOI: 10.1364/oe.26.028544] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Accepted: 09/21/2018] [Indexed: 06/09/2023]
Abstract
Three dimensional (3D) body scanning has been of great interest to many fields, yet it is still a challenge to generate accurate human body models in a convenient manner. In this paper, we present an accurate 3D body scanning system based on structured light technology. A four-step phase shifting combined with Gray-code method is applied to match pixels in camera and projector planes. The calculation of 3D point coordinates are also derived. The main contribution of this paper is twofold. First, an improved registration algorithm is proposed to align point clouds reconstructed from different views. Second, we propose a graph optimization algorithm to further minimize registration errors. Experimental results demonstrate that our system can produce accurate 3D body models conveniently.
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Pezzuolo A, Milani V, Zhu D, Guo H, Guercini S, Marinello F. On-Barn Pig Weight Estimation Based on Body Measurements by Structure-from-Motion (SfM). SENSORS (BASEL, SWITZERLAND) 2018; 18:E3603. [PMID: 30352969 PMCID: PMC6263682 DOI: 10.3390/s18113603] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 10/19/2018] [Accepted: 10/23/2018] [Indexed: 12/02/2022]
Abstract
Information on the body shape of pigs is a key indicator to monitor their performance and health and to control or predict their market weight. Manual measurements are among the most common ways to obtain an indication of animal growth. However, this approach is laborious and difficult, and it may be stressful for both the pigs and the stockman. The present paper proposes the implementation of a Structure from Motion (SfM) photogrammetry approach as a new tool for on-barn animal reconstruction applications. This is possible also to new software tools allowing automatic estimation of camera parameters during the reconstruction process even without a preliminary calibration phase. An analysis on pig body 3D SfM characterization is here proposed, carried out under different conditions in terms of number of camera poses and animal movements. The work takes advantage of the total reconstructed surface as reference index to quantify the quality of the achieved 3D reconstruction, showing how as much as 80% of the total animal area can be characterized.
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Aswehlee AM, Elbashti ME, Hattori M, Sumita YI, Taniguchi H. Feasibility and Accuracy of Noncontact Three-Dimensional Digitizers for Geometric Facial Defects: An In Vitro Comparison. INT J PROSTHODONT 2018; 31:601–606. [PMID: 30339162 DOI: 10.11607/ijp.5855] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
PURPOSE To evaluate the feasibility and accuracy of noncontact three-dimensional (3D) digitization systems for capturing facial defects. MATERIALS AND METHODS A stone model of a facial defect was digitized using high-accuracy industrial computed tomography as a reference scan. The model was also scanned using four different types of noncontact 3D digitizers: a laser beam light-sectioning technology with camera system and three different stereophotogrammetry systems. All 3D images were reconstructed with corresponding software and saved as standard triangulated language (STL) files. The 3D datasets were geometrically evaluated and compared to the reference data using 3D evaluation software. Kruskal-Wallis H tests were performed to assess differences in absolute 3D deviations between scans, with statistical significance defined as P < .05. RESULTS The four noncontact 3D digitization systems were feasible for digitizing the facial defect model, although the median 3D deviation of the four digitizers varied. There was a significant difference in accuracy among the digitizers (P < .001). CONCLUSION Digitization of facial defect models using various noncontact 3D digitizers appears to be feasible and is most accurate with laser beam light-sectioning technology. Further investigations assessing digitization of facial defects among patients are required to clinically verify the results of this study.
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Quiles C, Constantino JA, Gañán Y, Macías D, Quiles M. Stereophotogrammetric surface anatomy of the anterior cruciate ligament's tibial footprint: Precise osseous structure and distances to arthroscopically-relevant landmarks. Knee 2018; 25:531-544. [PMID: 29705076 DOI: 10.1016/j.knee.2018.03.016] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/18/2017] [Revised: 01/16/2018] [Accepted: 03/27/2018] [Indexed: 02/02/2023]
Abstract
BACKGROUND While femoral tunnel malposition is widely recognized as the main technical error of failed anterior cruciate ligament (ACL) surgery, tibial tunnel malposition is likely underrecognized and underappreciated. PURPOSE To describe more precisely the qualitative and quantitative anatomy of the ACL's tibial attachment in vitro using widely available technology for stereophotogrammetric surface reconstruction, and to test its applicability in vivo. METHODS Stereophotogrammetric surface reconstruction was obtained from fourteen proximal tibias of cadaver donors. Measurements of areas and distances from the center of the ACL footprint and the footprint of the obtained bundles to selected arthroscopically-relevant anatomic landmarks were carried out using a three-dimensional design software program, and means and 95% confidence intervals were calculated for these measurements. Reference landmarks were tested in three-dimensional models obtained with arthroscopic videos. MAIN FINDINGS The osseous footprint of the ACL was described in detail, including its precise elevated limits, size, and shape, with its elevation pattern described as a quarter-turn-staircase-like ridge. Its internal indentations were related to inter-spaces identified as bundle divisions. Distances from the footprint center to arthroscopically relevant landmarks were obtained and compared to its internal structure, yielding a useful X-like landmark pointing to the most accurate placeholder for the ACL footprint's "anatomic" center. Certain structures and reference landmarks described were readily recognized in three-dimensional models from arthroscopic videos. CONCLUSIONS Stereophotogrammetric surface reconstruction is an accessible technique for the investigation of anatomic structures in vitro, offering a detailed three-dimensional depiction of the ACL's osseous footprint.
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Kulczynski FZ, de Oliveira Andriola F, Deon PH, da Silva Melo DA, Pagnoncelli RM. Postural assessment in class III patients before and after orthognathic surgery. Oral Maxillofac Surg 2018; 22:143-150. [PMID: 29442244 DOI: 10.1007/s10006-018-0681-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Accepted: 01/21/2018] [Indexed: 06/08/2023]
Abstract
PURPOSE This study aimed to assess body posture before and after bimaxillary orthognathic surgery by photogrammetry in skeletal class III patients. METHODS Thirty-one patients with skeletal class III dentofacial deformities (14 men, 17 women) who underwent orthodontic preparation for surgery were included in this non-randomized controlled trial. Of these, 15 who did not undergo orthognathic surgery during the period of this study served as controls. Postural assessment was performed by photogrammetry using SAPO® (Postural Assessment Software) based on anterior-, posterior-, and lateral-view images taken 1 month before and 4 months after bimaxillary orthognathic surgery with internal rigid fixation (or 4 months after the initial assessment, for the control group). The study was approved by PUCRS Research Ethics Committee, and written informed consent was obtained from all individual participants prior to their inclusion in the study. RESULTS There was no significant difference between groups for age, gender, and GAP. In the intervention group, the right leg/hindfoot angle, which initially indicated a valgus deformity, normalized after intervention (P < 0.048). Posterior displacement of the head (P < 0.005) and trunk (P < 0.004) were observed after intervention. CONCLUSIONS These results suggest that correction of class III dentofacial deformities by bimaxillary orthognathic surgery can produce systemic postural adjustments, especially posterior displacement of the head and trunk and knee and ankle valgus.
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Kim YC, Kwon JG, Kim SC, Huh CH, Kim HJ, Oh TS, Koh KS, Choi JW, Jeong WS. Comparison of Periorbital Anthropometry Between Beauty Pageant Contestants and Ordinary Young Women with Korean Ethnicity: A Three-Dimensional Photogrammetric Analysis. Aesthetic Plast Surg 2018; 42:479-490. [PMID: 29273931 DOI: 10.1007/s00266-017-1040-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2017] [Accepted: 11/19/2017] [Indexed: 11/25/2022]
Abstract
BACKGROUND The purpose of this study is to investigate the differences in the periorbital anthropometry between national Beauty Pageant Contestants and Ordinary Young Women with Korean ethnicity. METHODS Forty-three Beauty Pageant Contestants who were elected for the national beauty contest and forty-eight Ordinary Young Women underwent 3D photography. The authors analyzed 3D photogrammetric measures regarding periorbital soft tissue. RESULTS The palpebral fissure width was significantly higher in the Beauty Pageant Contestants than the Ordinary Young Women (27.7 ± 1.2 vs. 26.3 ± 1.6 mm) (p < 0.001). The palpebral fissure height was also significantly higher in the Beauty Pageant Contestants (11.5. ± 1.0 vs. 9.1 ± 1.2 mm) (p < 0.001). The intercanthal width and upper eyelid height were smaller for the Beauty Pageant Contestants (intercanthal width, 34.3 ± 1.86 mm vs. 36.7 ± 3.1 mm; upper eyelid height, 11.5 ± 1.4 mm vs. 13.4 ± 2.3 mm) (p < 0.05). The nasal width and midfacial width were significantly smaller in the Beauty Pageant Contestants (nasal width, 38.0 ± 1.8 vs. 39.5 ± 2.2 mm; midfacial width 144.5 ± 3.9 vs. 146.9 ± 5.2 mm) (p < 0.05). The eyebrow showed significantly different features between the two groups in terms of vertical position in the upper face and the shape of the brow apex. The interpupillary distance, binocular distance, slant of palpebral fissure and width of pretarsal crease showed no significant difference between the two groups. CONCLUSION Periorbital features in Beauty Pageant Contestants are wide-set eyes, larger palpebral fissure in width and height, relatively small upper eyelid height and intercanthal width, and relatively small nose and facial width compared to normal women. Our anthropometric results can be referable values for Asian eyelid surgery and help surgeons to establish individualized surgical planning. LEVEL OF EVIDENCE V This journal requires that authors assign a level of evidence to each article. For a full description of these Evidence-Based Medicine ratings, please refer to the Table of Contents or the online Instructions to Authors www.springer.com/00266 .
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Beltran RS, Ruscher-Hill B, Kirkham AL, Burns JM. An evaluation of three-dimensional photogrammetric and morphometric techniques for estimating volume and mass in Weddell seals Leptonychotes weddellii. PLoS One 2018; 13:e0189865. [PMID: 29320573 PMCID: PMC5761831 DOI: 10.1371/journal.pone.0189865] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Accepted: 12/04/2017] [Indexed: 11/18/2022] Open
Abstract
Body mass dynamics of animals can indicate critical associations between extrinsic factors and population vital rates. Photogrammetry can be used to estimate mass of individuals in species whose life histories make it logistically difficult to obtain direct body mass measurements. Such studies typically use equations to relate volume estimates from photogrammetry to mass; however, most fail to identify the sources of error between the estimated and actual mass. Our objective was to identify the sources of error that prevent photogrammetric mass estimation from directly predicting actual mass, and develop a methodology to correct this issue. To do this, we obtained mass, body measurements, and scaled photos for 56 sedated Weddell seals (Leptonychotes weddellii). After creating a three-dimensional silhouette in the image processing program PhotoModeler Pro, we used horizontal scale bars to define the ground plane, then removed the below-ground portion of the animal's estimated silhouette. We then re-calculated body volume and applied an expected density to estimate animal mass. We compared the body mass estimates derived from this silhouette slice method with estimates derived from two other published methodologies: body mass calculated using photogrammetry coupled with a species-specific correction factor, and estimates using elliptical cones and measured tissue densities. The estimated mass values (mean ± standard deviation 345±71 kg for correction equation, 346±75 kg for silhouette slice, 343±76 kg for cones) were not statistically distinguishable from each other or from actual mass (346±73 kg) (ANOVA with Tukey HSD post-hoc, p>0.05 for all pairwise comparisons). We conclude that volume overestimates from photogrammetry are likely due to the inability of photo modeling software to properly render the ventral surface of the animal where it contacts the ground. Due to logistical differences between the "correction equation", "silhouette slicing", and "cones" approaches, researchers may find one technique more useful for certain study programs. In combination or exclusively, these three-dimensional mass estimation techniques have great utility in field studies with repeated measures sampling designs or where logistic constraints preclude weighing animals.
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