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76
Phan J, Austin BP, Waugh DS. Crystal structure of the Yersinia type III secretion protein YscE. Protein Sci 2005;14:2759-63. [PMID: 16195558 PMCID: PMC2253283 DOI: 10.1110/ps.051706105] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
77
Ferracci F, Schubot FD, Waugh DS, Plano GV. Selection and characterization of Yersinia pestis YopN mutants that constitutively block Yop secretion. Mol Microbiol 2005;57:970-87. [PMID: 16091038 DOI: 10.1111/j.1365-2958.2005.04738.x] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
78
Lee K, Boovanahalli SK, Nam KY, Kang SU, Lee M, Phan J, Wu L, Waugh DS, Zhang ZY, No KT, Lee JJ, Burke TR. Synthesis of tripeptides as potent Yersinia protein tyrosine phosphatase inhibitors. Bioorg Med Chem Lett 2005;15:4037-42. [PMID: 16039123 DOI: 10.1016/j.bmcl.2005.06.027] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2005] [Revised: 06/06/2005] [Accepted: 06/06/2005] [Indexed: 11/15/2022]
79
Phan J, Shi ZD, Burke TR, Waugh DS. Crystal Structures of a High-affinity Macrocyclic Peptide Mimetic in Complex with the Grb2 SH2 Domain. J Mol Biol 2005;353:104-15. [PMID: 16165154 DOI: 10.1016/j.jmb.2005.08.037] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2005] [Revised: 08/15/2005] [Accepted: 08/17/2005] [Indexed: 10/25/2022]
80
Schubot FD, Cherry S, Austin BP, Tropea JE, Waugh DS. Crystal structure of the protease-resistant core domain of Yersinia pestis virulence factor YopR. Protein Sci 2005;14:1679-83. [PMID: 15930010 PMCID: PMC2253397 DOI: 10.1110/ps.051446405] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
81
Waugh DS. Making the most of affinity tags. Trends Biotechnol 2005;23:316-20. [PMID: 15922084 DOI: 10.1016/j.tibtech.2005.03.012] [Citation(s) in RCA: 382] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2004] [Revised: 02/14/2005] [Accepted: 03/31/2005] [Indexed: 10/25/2022]
82
Nallamsetty S, Kapust RB, Tözsér J, Cherry S, Tropea JE, Copeland TD, Waugh DS. Efficient site-specific processing of fusion proteins by tobacco vein mottling virus protease in vivo and in vitro. Protein Expr Purif 2005;38:108-15. [PMID: 15477088 DOI: 10.1016/j.pep.2004.08.016] [Citation(s) in RCA: 113] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2004] [Revised: 08/13/2004] [Indexed: 11/17/2022]
83
Tözsér J, Tropea JE, Cherry S, Bagossi P, Copeland TD, Wlodawer A, Waugh DS. Comparison of the substrate specificity of two potyvirus proteases. FEBS J 2005;272:514-23. [PMID: 15654889 DOI: 10.1111/j.1742-4658.2004.04493.x] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
84
Hansen AM, Gu Y, Li M, Andrykovitch M, Waugh DS, Jin DJ, Ji X. Structural basis for the function of stringent starvation protein a as a transcription factor. J Biol Chem 2005;280:17380-91. [PMID: 15735307 DOI: 10.1074/jbc.m501444200] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
85
Schubot FD, Jackson MW, Penrose KJ, Cherry S, Tropea JE, Plano GV, Waugh DS. Three-dimensional structure of a macromolecular assembly that regulates type III secretion in Yersinia pestis. J Mol Biol 2005;346:1147-61. [PMID: 15701523 DOI: 10.1016/j.jmb.2004.12.036] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2004] [Revised: 12/14/2004] [Accepted: 12/16/2004] [Indexed: 01/14/2023]
86
Liang X, Young JJ, Boone SA, Waugh DS, Duesbery NS. Involvement of Domain II in Toxicity of Anthrax Lethal Factor. J Biol Chem 2004;279:52473-8. [PMID: 15465830 DOI: 10.1074/jbc.m409105200] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
87
Schubot FD, Waugh DS. A pivotal role for reductive methylation in the de novo crystallization of a ternary complex composed of Yersinia pestis virulence factors YopN, SycN and YscB. ACTA CRYSTALLOGRAPHICA SECTION D: BIOLOGICAL CRYSTALLOGRAPHY 2004;60:1981-6. [PMID: 15502305 DOI: 10.1107/s0907444904023005] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2004] [Accepted: 09/15/2004] [Indexed: 11/10/2022]
88
Derewenda U, Mateja A, Devedjiev Y, Routzahn KM, Evdokimov AG, Derewenda ZS, Waugh DS. The structure of Yersinia pestis V-antigen, an essential virulence factor and mediator of immunity against plague. Structure 2004;12:301-6. [PMID: 14962390 DOI: 10.1016/j.str.2004.01.010] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2003] [Revised: 10/17/2003] [Accepted: 10/18/2003] [Indexed: 10/22/2022]
89
Phan J, Tropea JE, Waugh DS. Structure of the Yersinia pestis type III secretion chaperone SycH in complex with a stable fragment of YscM2. ACTA CRYSTALLOGRAPHICA SECTION D: BIOLOGICAL CRYSTALLOGRAPHY 2004;60:1591-9. [PMID: 15333930 DOI: 10.1107/s0907444904017597] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2004] [Accepted: 07/16/2004] [Indexed: 11/10/2022]
90
Swietnicki W, O'Brien S, Holman K, Cherry S, Brueggemann E, Tropea JE, Hines HB, Waugh DS, Ulrich RG. Novel protein-protein interactions of the Yersinia pestis type III secretion system elucidated with a matrix analysis by surface plasmon resonance and mass spectrometry. J Biol Chem 2004;279:38693-700. [PMID: 15213222 DOI: 10.1074/jbc.m405217200] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
91
Phan J, Lee K, Cherry S, Tropea JE, Burke TR, Waugh DS. High-resolution structure of the Yersinia pestis protein tyrosine phosphatase YopH in complex with a phosphotyrosyl mimetic-containing hexapeptide. Biochemistry 2004;42:13113-21. [PMID: 14609321 DOI: 10.1021/bi030156m] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
92
Blaszczyk J, Gan J, Tropea JE, Court DL, Waugh DS, Ji X. Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA. Structure 2004;12:457-66. [PMID: 15016361 DOI: 10.1016/j.str.2004.02.004] [Citation(s) in RCA: 99] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2003] [Revised: 11/04/2003] [Accepted: 11/14/2003] [Indexed: 10/26/2022]
93
Evdokimov AG, Phan J, Tropea JE, Routzahn KM, Peters HK, Pokross M, Waugh DS. Similar modes of polypeptide recognition by export chaperones in flagellar biosynthesis and type III secretion. Nat Struct Mol Biol 2003;10:789-93. [PMID: 12958592 DOI: 10.1038/nsb982] [Citation(s) in RCA: 79] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2003] [Accepted: 07/25/2003] [Indexed: 11/09/2022]
94
Zhdanov AS, Phan J, Evdokimov AG, Tropea JE, Kapust RB, Li M, Wlodawer A, Waugh DS. [Tobacco etch virus proteinase: crystal structure of the active enzyme and its inactive mutant]. BIOORGANICHESKAIA KHIMIIA 2003;29:457-60. [PMID: 14601399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 04/27/2023]
95
Routzahn KM, Waugh DS. Differential effects of supplementary affinity tags on the solubility of MBP fusion proteins. JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 2003;2:83-92. [PMID: 12836665 DOI: 10.1023/a:1020424023207] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
96
Lee K, Gao Y, Yao ZJ, Phan J, Wu L, Liang J, Waugh DS, Zhang ZY, Burke TR. Tripeptide inhibitors of Yersinia protein-tyrosine phosphatase. Bioorg Med Chem Lett 2003;13:2577-81. [PMID: 12852970 DOI: 10.1016/s0960-894x(03)00481-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
97
Andrykovitch M, Routzahn KM, Li M, Gu Y, Waugh DS, Ji X. Characterization of four orthologs of stringent starvation protein A. ACTA CRYSTALLOGRAPHICA SECTION D: BIOLOGICAL CRYSTALLOGRAPHY 2003;59:881-6. [PMID: 12777805 DOI: 10.1107/s0907444903005699] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2002] [Accepted: 03/11/2003] [Indexed: 11/10/2022]
98
Fox JD, Waugh DS. Maltose-binding protein as a solubility enhancer. Methods Mol Biol 2003;205:99-117. [PMID: 12491882 DOI: 10.1385/1-59259-301-1:99] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
99
Knowlton JR, Bubunenko M, Andrykovitch M, Guo W, Routzahn KM, Waugh DS, Court DL, Ji X. A spring-loaded state of NusG in its functional cycle is suggested by X-ray crystallography and supported by site-directed mutants. Biochemistry 2003;42:2275-81. [PMID: 12600194 DOI: 10.1021/bi0272508] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
100
Fox JD, Routzahn KM, Bucher MH, Waugh DS. Maltodextrin-binding proteins from diverse bacteria and archaea are potent solubility enhancers. FEBS Lett 2003;537:53-7. [PMID: 12606030 DOI: 10.1016/s0014-5793(03)00070-x] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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