76
|
Yan K, Li L, Joseph J, Rubens DR, Messing EM, Liao L, Yu Y. A real-time prostate cancer detection technique using needle insertion force and patient-specific criteria during percutaneous intervention. Med Phys 2009; 36:3356-62. [PMID: 19673230 DOI: 10.1118/1.3148834] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
In this article, the authors present a novel real-time cancer detection technique by using needle insertion forces in conjunction with patient-specific criteria during percutaneous interventions. Needle insertion experiments and pathological analysis were performed for developing a computer-aided detection (CAD) model. Backward stepwise regression method was performed to identify the statistically significant patient-specific factors. A baseline force model was then developed using these significant factors. The threshold force model that estimated the lower bound of the cancerous tissue forces was formulated by adding an adjustable classifier to the baseline force model. Trade-off between sensitivity and specificity was obtained by varying the threshold value of the classifier, from which the receiver-operating characteristic (ROC) curve was generated. Sequential quadratic programming was used to optimize the CAD model by maximizing the area under the ROC curve (AUC) using a set of model-training patient data. When the CAD model was evaluated using an independent set of model-validation patient data, an AUC of 0.90 was achieved. The feasibility of cancer detection in real time during percutaneous interventions was established.
Collapse
|
77
|
Yan K, Huang K, Podder T, Yu Y. SU-FF-J-27: Calibration of the Dual-Transducer Focused Acoustic Radiation Field for a Multimodal Sono-Contrast NIR Spectroscopy System. Med Phys 2009. [DOI: 10.1118/1.3181319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
78
|
Podder T, Yan K, Yu Y. SU-FF-T-36: Prostate Brachytherapy Seed Immobilization: Three Novel Techniques as Potential Candidates for Robotic Implementation. Med Phys 2009. [DOI: 10.1118/1.3181508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
79
|
Huang K, Yan K, Podder T, Hu Y, Yu Y. SU-FF-J-161: Feasibility Analysis On Converting Conventional Orthovoltage Biological Irradiator to a Micro-Beam Array for Small Animal/cell Irradiation. Med Phys 2009. [DOI: 10.1118/1.3181454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
80
|
Yan K, Podder T, Huang K, Hu Y, Li J, Liao L, Yu Y. SU-FF-J-26: Multimodal Sono-Contrast NIR Spectroscopy System for Breast Cancer Diagnosis. Med Phys 2009. [DOI: 10.1118/1.3181318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
81
|
Liedtke C, Yan K, Wu Y, Hortobagyi GN, Symmans WF, Valero V, Goette M, Kiesel L, Pusztai L. Targeting of breast cancer with non-oncology drugs – possible novel therapeutic option for triple-negative breast cancer. Cancer Res 2009. [DOI: 10.1158/0008-5472.sabcs-2119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Abstract #2119
Introduction: Triple-negative breast cancer (TNBC) is defined by lack of ER, and PR expression and normal HER2 expression. It is characterized by aggressive biological presentation and unfavorable outcome. It is associated with frequent lack of response to current chemotherapy agents. Recently, 392 drugged genes that serve as targets for 1557 both oncologic and non-oncologic drugs were identified from the pharmacologic database DrugBank (Lauss et al. Pharmacogenomics 2007). In this study, we compared expression levels of these known drug targets between TNBC and receptor-positive cancers. Methods: Gene expression profiles were obtained from fine needle biopsies of newly diagnosed early stage breast cancer before any therapy (n=133, MDACC dataset). Differential expression of these genes was validated in a second independent data set (n=286, Rotterdam dataset) and in a panel of cell lines (n=19). In order to assess the functional relevance of known drug targets overexpressed in TNBC we performed in vitro experiments. Cell lines were treated with various concentrations of selected drugs alone or in combination with paclitaxel. Results: We mapped 675 U133A probe sets representing 347 unique drug targets to the Affymetrix U133A Genechip. 44 drug targets were overexpressed in TNBC compared to non-TNBC in the MDACC dataset. Thirty-three of these (75%) were also overexpressed among TNBC compared to non-TNBC in the Rotterdam dataset. Glutathione-S-transferase pi (GSTpi, target of clomipramine) was the most highly and consistently overexpressed target in human TNBC and in estrogen- and HER2-receptor-negative breast cancer cell lines. The GSTpi overexpressing (and triple negative) human mammary cell line HBL-100 showed dose-dependent inhibition of growth after 144 hrs of incubation with clomipramine, whereas growth of the GSTpi-low expressing (non-triple negative) breast cancer cell lines MCF-7 and SKBR3 was not inhibited by this drug. Treatment with clomipramine did not alter sensitivity to paclitaxel in either cell line in vitro. Conclusion: Gene expression analysis indicates that targets for several known drugs are over expressed in TNBC relative to other types of breast cancers. We hypothesize that some of these drugs may influence the behavior of TNBC and may represent future therapeutic options. Further experiments are needed to fully explore the functional implications of these findings; however, our preliminary results suggest that inhibition of GSTpi with clomipramine leads to inhibition of cell growth of TNBC cell lines in vitro.
Citation Information: Cancer Res 2009;69(2 Suppl):Abstract nr 2119.
Collapse
|
82
|
Yan K, Chen M, Yang W, Wang Y, Gao W, Hao C, Xing B, Huang X. Radiofrequency ablation of hepatocellular carcinoma: long-term outcome and prognostic factors. Clin Imaging 2009. [DOI: 10.1016/j.clinimag.2008.10.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
83
|
Yan K, Podder T, Sherman J, Li L, Joseph J, Rubens D, Messing E, Liao L, Okunieff P, Yu Y. A Real-time Cancer Sensing Technique using Needle Insertion Forces and Patient-specific Criteria during Percutaneous Intervention. Int J Radiat Oncol Biol Phys 2008. [DOI: 10.1016/j.ijrobp.2008.06.874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
84
|
Buzurovic I, Podder T, Yan K, Hu Y, Valicenti R, Dicker A, Yu Y. MO-D-AUD B-04: Parameter Optimization for Brachytherapy Robotic Needle Insertion and Seed Deposition. Med Phys 2008. [DOI: 10.1118/1.2962345] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
85
|
Hu Y, Podder T, Yan K, Winey B, Liao L, Parker K, Yu Y. SU-EE-A2-05: Tissue Ablation by Medium Intensity Focused Ultrasound for Breast Cancer Treatment: Preliminary Study. Med Phys 2008. [DOI: 10.1118/1.2961384] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
86
|
Yan K, Podder T, Buzurovic I, Yu Y. SU-GG-T-32: Seed Immobilization Using Diathermy Coagulation for Brachytherapy Procedure. Med Phys 2008. [DOI: 10.1118/1.2961782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
87
|
Buzurovic I, Podder T, Hu Y, Yan K, Valicenti R, Dicker A, Yu Y. TH-C-AUD A-04: Calibration of Image-Guided Robotic System for Prostate Brachytherapy. Med Phys 2008. [DOI: 10.1118/1.2962839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
88
|
Yan K, Wachsberger P, Liu Y, Marrero N, Hu Y, Yu Y. SU-GG-J-39: Assessment of Early Vascular Response to Anti-Angiogenic Therapy in a Murine Model Using Acoustic Radiation-Mediated Multimodal Optical Spectroscopy. Med Phys 2008. [DOI: 10.1118/1.2961597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
|
89
|
Chen M, Yang W, Yan K, Dai Y, Wu W, Wu J. Imaging instructed standardized treatment for hepatocellular carcinoma with radiofrequency ablation. J Clin Oncol 2008. [DOI: 10.1200/jco.2008.26.15_suppl.15534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
|
90
|
Dean-Colomb W, Yan K, Liedtke C, Symmans WF, Holmes FA, O'Shaughnessy J, Asmar L, Hortobagyi GN, Pusztai L, Gonzalez-Angulo US Oncology AM. Transcriptional profiles of triple receptor-negative breast cancer: Are Caucasian, Hispanic, and African-American women different? J Clin Oncol 2008. [DOI: 10.1200/jco.2008.26.15_suppl.22014] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
|
91
|
Hatzis C, Symmans WF, Lin F, Zheng B, Yan K, Booser DJ, Gong Y, Valero V, Hortobagyi GN, Pusztai L. Genomic predictors of pathologic response to preoperative chemotherapy for triple-negative and ER-positive/HER2-negative breast cancers. J Clin Oncol 2008. [DOI: 10.1200/jco.2008.26.15_suppl.571] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
|
92
|
|
93
|
Yang W, Chen MH, Yan K, Wu W, Dai Y, Zhang H. Differential diagnosis of nonfunctional islet cell tumor and pancreatic carcinoma with sonography. Clin Imaging 2008. [DOI: 10.1016/j.clinimag.2008.01.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
94
|
Liu Z, Winands GJJ, Yan K, Pemen AJM, Van Heesch EJM. A high-voltage pulse transformer with a modular ferrite core. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2008; 79:015104. [PMID: 18248063 DOI: 10.1063/1.2830943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
A high ratio (winding ratio of 1:80) pulse transformer with a modular ferrite core was developed for a repetitive resonant charging system. The magnetic core is constructed from 68 small blocks of ferrites, glued together by epoxy resin. This allows a high degree of freedom in choosing core shape and size. Critical issues related to this modular design are the size tolerance of the individual ferrite blocks, the unavoidable air gap between the blocks, and the saturation of the core. To evaluate the swing of the flux density inside the core during the charging process, an equivalent circuit model was introduced. It was found that when a transformer is used in a resonant charging circuit, the minimal required volume of the magnetic material to keep the core unsaturated depends on the coupling coefficient of the transformer and is independent of the number of turns of the primary winding. Along the flux path, 17 small air gaps are present due to the inevitable joints between the ferrite blocks. The total air gap distance is about 0.67 mm. The primary and secondary windings have 16 turns and 1280 turns, respectively, and the actually obtained ratio is about 1:75.4. A coupling coefficient of 99.6% was obtained. Experimental results are in good agreement with the model, and the modular ferrite core works well. Using this transformer, the high-voltage capacitors can be charged up to more than 70 kV from a low-voltage capacitor with an initial charging voltage of about 965 V. With 26.9 J energy transfer, the increased flux density inside the core was about 0.23 T, and the core remains unsaturated. The energy transfer efficiency from the primary to the secondary was around 92%.
Collapse
|
95
|
Chen MH, Yang W, Yan K, Dai Y, Wu W, Fan ZH, Callstrom MR, Charboneau JW. The role of contrast-enhanced ultrasound in planning treatment protocols for hepatocellular carcinoma before radiofrequency ablation. Clin Radiol 2007; 62:752-60. [PMID: 17604763 DOI: 10.1016/j.crad.2006.12.013] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2006] [Revised: 12/07/2006] [Accepted: 12/19/2006] [Indexed: 12/25/2022]
Abstract
AIM To evaluate the clinical value of contrast-enhanced ultrasound (CEUS) for patients with hepatocellular carcinoma (HCC) in identifying the tumour number, ablation range and feeding vessels before ultrasound-guided radiofrequency ablation (RFA), and to compare the efficacy of RFA after CEUS with the efficacy of RFA after non-enhanced ultrasonography (US) without contrast medium administration. MATERIALS AND METHODS From 2002 to 2005, 81 patients with 110 HCCs underwent CEUS with SonoVue before RFA treatment (group A). Eighty six patients with 112 HCCs who underwent US without contrast enhancement before RFA served as the control group (group B). The average diameters of the lesions in group A and group B were 3.6+/-1.1cm and 3.5+/-1.1cm, respectively. There were no significant differences in clinical data between the two groups. Regular follow-up after treatment was performed using contrast-enhanced computed tomography (CECT). After treatment, complete necrosis was defined as the absence of viable tissue in treated tumours at the 1-year follow-up CECT. RESULTS Using CEUS an additional seven small lesions (< or =2.0 cm) were found compared with those found using CECT and conventional US. CEUS showed that 56.4% of lesions (62/110 tumours) were larger in size and 49.1% (54/110 tumours) became more irregular in shape during the arterial phase than on conventional US. Feeding vessels were detected using CEUS in 52 (91.2%) of 57 lesions that were larger than 3.5 cm. The follow-up period was at least 1 year for each case. The complete tumour necrosis rate in group A was significantly higher than that in group B (92.2% versus 83.0%; p=0.036). CONCLUSION CEUS can be used to more accurately define the size and contour of lesions, and to detect additional small or satellite lesions and the feeding vessel of HCC tumours. CEUS provided important information for designing the ablation protocol, and might improve the efficacy of RFA.
Collapse
|
96
|
Bian J, Song G, Yan K. Structure and microwave dielectric properties of Ba1+x[(Co0.7Zn0.3)1/3Nb2/3]O3 (−0.015≤x≤0.015). Ann Ital Chir 2007. [DOI: 10.1016/j.jeurceramsoc.2006.11.007] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
97
|
Fujii Y, Khoshnoodi J, Takenaka H, Hosoyamada M, Nakajo A, Bessho F, Kudo A, Takahashi S, Arimura Y, Yamada A, Nagasawa T, Ruotsalainen V, Tryggvason K, Lee AS, Yan K. The effect of dexamethasone on defective nephrin transport caused by ER stress: a potential mechanism for the therapeutic action of glucocorticoids in the acquired glomerular diseases. Kidney Int 2006; 69:1350-9. [PMID: 16531978 DOI: 10.1038/sj.ki.5000317] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The mechanism by which glucocorticoids govern antiproteinuric effect in nephrotic syndrome remains unknown. Present study examined the protective role of dexamethasone (DEX) in the intracellular trafficking of nephrin under endoplasmic reticulum (ER) stress. Human embryonic kidney-293 cell line expressing a full-length human nephrin was cultured in mediums containing 5.5 or 25 mM glucose with or without DEX. The result revealed that glucose starvation evoked a rapid ER stress leading to formation of underglycosylated nephrin that was remained in the ER as a complex with calreticulin/calnexin. DEX rescued this interfered trafficking through binding to its receptor and stimulating the mitochondrial transcripts and adenosine 5' triphosphate (ATP) production, leading to synthesis of fully glycosylated nephrin. These results suggest that ER-stress in podocytes may cause alteration of nephrin N-glycosylation, which may be an underlying factor in the pathomechanism of the proteinuria in nephrotic syndrome. DEX may restore this imbalance by stimulating expression of mitochondrial genes, resulted in the production of ATP that is essential factor for proper folding machinery aided by the ER chaperones.
Collapse
|
98
|
Yan K, Podder T, Yu Y, Ling K, Liu TI, Ng W. Online parameter estimator using extended Kalman filtering method for needle steering modeling. J Biomech 2006. [DOI: 10.1016/s0021-9290(06)85653-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
|
99
|
Watt KN, Yan K, DeCrescenzo G, Rowlands JA. The physics of computed radiography: Measurements of pulse height spectra of photostimulable phosphor screens using prompt luminescence. Med Phys 2005; 32:3589-98. [PMID: 16475757 DOI: 10.1118/1.2122587] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
Computed radiography (CR) is a digital technology that employs reusable photostimulable phosphor (PSP) imaging plates (IP) to acquire radiographic images. In CR, the x-ray attenuation pattern of the imaged object is temporarily stored as a latent charge image within the PSP. The latent image is optically readout as photostimulated luminescence (PSL) when the phosphor is subsequently stimulated using a scanning laser. The multiple stages necessary to create a CR image make it difficult to investigate either experimentally or theoretically. In order to examine the performance of the CR system at a fundamental level separate measurements of the processes involved are desirable. Here pulse height spectroscopy is used to study the prompt violet light emission or prompt luminescence (PL) from commercial PSP screens. Since the mechanism by which light escapes from the phosphor is identical for PL and PSL, observations and conclusions based on the pulse height spectra (PHS) of PL are relevant to the understanding of the behavior of the PSL light emission that outputs the radiographic image in CR. The PL PHS of screens of different thickness and optical properties were measured and compared with the PHS of conventional phosphors. A new method for calibration of the PHS in terms of the absolute number of optical photons per x-ray is introduced and compared to previously established methods.
Collapse
|
100
|
Aslam M, Chahrour MH, Razzaq A, Haque S, Yan K, Leal SM, Ahmad W. A novel locus for autosomal recessive form of hypotrichosis maps to chromosome 3q26.33-q27.3. J Med Genet 2005; 41:849-52. [PMID: 15520410 PMCID: PMC1735610 DOI: 10.1136/jmg.2004.019729] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
|