Elevated testosterone levels in a racing horse due to an XY testicular disorder of sexual development

A female thoroughbred successful in horse racing was positively tested for high testosterone values. This horse neither showed stallion-like-behaviour nor signs of ambiguous external genitalia. The karyotype of this horse was 2n = 64,XY and the sex-determining region of Y (SRY) PCR was positive. Hair samples tested for naturally testosterone revealed values normal for stallions, and tests for eight synthetic testosterone esters remained negative. The phenotype, ultrasonographic examination, hormone status, cytogenetic evaluation and molecular diagnostics lead to the diagnosis of an XY testicular disorder of sexual development (DSD) due to a complete androgen insensitivity syndrome. To our knowledge this is the first report about a thoroughbred in racing sports with an XY testicular disorder of sexual development. To date, intersex racing horses have never been described in thoroughbreds or a regulation for intersexes in regard to horse races has been issued.

Effective population size, extended linkage disequilibrium and signatures of selection in the rare dog breed lundehund

The Lundehund is an old dog breed with remarkable anatomical features including polydactyly in all four limbs and extraordinary flexibility of the spine. We genotyped 28 Lundehund using the canine Illumina high density beadchip to estimate the effective population size (N_e) and inbreeding coefficients as well as to identify potential regions of positive selection. The decay of linkage disequilibrium was slow with r² = 0.95 in 50 kb distance. The last 7-200 generations ago, Ne was at 10-13. An increase of N_e was noted in the very recent generations with a peak value of 19 for N_e at generation 4. The FROH estimated for 50-, 65- and 358-SNP windows were 0.87, 087 and 0.81, respectively. The most likely estimates for F_ROH after removing identical-by-state segments due to linkage disequilibria were at 0.80-0.81. The extreme loss of heterozygosity has been accumulated through continued inbreeding over 200 generations within a probably closed population with a small effective population size. The mean inbreeding coefficient based on pedigree data for the last 11 generations (F_Ped = 0.10) was strongly biased downwards due to the unknown coancestry of the founders in this pedigree data. The long-range haplotype test identified regions with genes involved in processes of immunity, olfaction, woundhealing and neuronal development as potential targets of selection. The genes QSOX2, BMPR1B and PRRX2 as well as MYOM1 are candidates for selection on the Lundehund characteristics small body size, increased number of digits per paw and extraordinary mobility, respectively.

Genetic diversity in the Maremmano horse and its relationship with other European horse breeds

The Maremmano is an Italian warmblood horse breed from central Italy. We characterized the genetic diversity and the degree of admixture in Maremmano in comparison to 14 other European horse breeds using 30 microsatellites. Between-breed diversity explained about 9 per cent of the total genetic diversity. Cluster analysis, genetic distances and genetic differentiation coefficients showed a close relationship of Maremmano with Hanoverian and Lusitano in accordance with breed history.

Genetics of bovine abomasal displacement

Displacement of the abomasum (DA) is a common inherited condition in Holstein cows. This article reviews the genetics of DA including risk factors, genetic parameters and molecular genetic results. Breeds other than Holsteins affected by DA include Guernseys, Jerseys, Brown Swiss, Ayrshires and Simmental-Red Holsteins. In most DA cases, left displacements of the abomasum (LDA) are seen. Lactation incidence rates are higher for DA in first lactation Holsteins compared to later lactations. For Holstein cows, heritability estimates for DA are between 0.03 and 0.53. Genetic correlation estimates among DA and milk production traits range from positive to negative. Genome-wide significant genomic regions associated with LDA are located on bovine chromosomes (BTA) 1, 3, 11, 20 and 23. Motilin-associated single nucleotide polymorphisms on BTA23 exhibit a functional relationship with LDA. Pathways for deposition of calcium, insulin-dependent diabetes mellitus and synaptic transmission are significantly related to LDA in Holsteins. Deciphering the DA-associated genomic regions and genes may be an important step in the quest to understand the underlying disease-causing mechanisms and in unravelling mutations with a causal relationship to DA.

Genome-wide association study identifies phospholipase C zeta 1 (PLCz1) as a stallion fertility locus in Hanoverian warmblood horses

A consistently high level of stallion fertility plays an economically important role in modern horse breeding. We performed a genome-wide association study for estimated breeding values of the paternal component of the pregnancy rate per estrus cycle (EBV-PAT) in Hanoverian stallions. A total of 228 Hanoverian stallions were genotyped using the Equine SNP50 Beadchip. The most significant association was found on horse chromosome 6 for a single nucleotide polymorphism (SNP) within phospholipase C zeta 1 (PLCz1). In the close neighbourhood to PLCz1 is located CAPZA3 (capping protein (actin filament) muscle Z-line, alpha 3). The gene PLCz1 encodes a protein essential for spermatogenesis and oocyte activation through sperm induced Ca²⁺-oscillation during fertilization. We derived equine gene models for PLCz1 and CAPZA3 based on cDNA and genomic DNA sequences. The equine PLCz1 had four different transcripts of which two contained a premature termination codon. Sequencing all exons and their flanking sequences using genomic DNA samples from 19 Hanoverian stallions revealed 47 polymorphisms within PLCz1 and one SNP within CAPZA3. Validation of these 48 polymorphisms in 237 Hanoverian stallions identified three intronic SNPs within PLCz1 as significantly associated with EBV-PAT. Bioinformatic analysis suggested regulatory effects for these SNPs via transcription factor binding sites or microRNAs. In conclusion, non-coding polymorphisms within PLCz1 were identified as conferring stallion fertility and PLCz1 as candidate locus for male fertility in Hanoverian warmblood. CAPZA3 could be eliminated as candidate gene for fertility in Hanoverian stallions.

Next generation sequencing gives an insight into the characteristics of highly selected breeds versus non-breed horses in the course of domestication

BACKGROUND

Domestication has shaped the horse and lead to a group of many different types. Some have been under strong human selection while others developed in close relationship with nature. The aim of our study was to perform next generation sequencing of breed and non-breed horses to provide an insight into genetic influences on selective forces.

RESULTS

Whole genome sequencing of five horses of four different populations revealed 10,193,421 single nucleotide polymorphisms (SNPs) and 1,361,948 insertion/deletion polymorphisms (indels). In comparison to horse variant databases and previous reports, we were able to identify 3,394,883 novel SNPs and 868,525 novel indels. We analyzed the distribution of individual variants and found significant enrichment of private mutations in coding regions of genes involved in primary metabolic processes, anatomical structures, morphogenesis and cellular components in non-breed horses and in contrast to that private mutations in genes affecting cell communication, lipid metabolic process, neurological system process, muscle contraction, ion transport, developmental processes of the nervous system and ectoderm in breed horses.

CONCLUSIONS

Our next generation sequencing data constitute an important first step for the characterization of non-breed in comparison to breed horses and provide a large number of novel variants for future analyses. Functional annotations suggest specific variants that could play a role for the characterization of breed or non-breed horses.

Selection response to DNA testing for canine ceroid lipofuscinosis in Tibetan terriers

A late onset form of canine ceroid lipofuscinosis (CCL) is prevalent in Tibetan terriers. The disease is inherited as a monogenic recessive trait caused by aberrant exon skipping in ATP13A2. The aim of the present study was to analyse the frequencies of this mutation in Tibetan terriers registered with the German club for Tibetan dog breeds (Internationaler Klub für Tibetische Hunderassen, KTR) from 1987 to 2012 and to determine responses to selection following the introduction of DNA testing in 2010. The study included DNA extracted from blood samples from 1120/1240 (90.3%) Tibetan terriers registered with the KTR, including 405/420 (96.4%) registered breeding dogs. Mutant allele frequencies before the introduction of DNA testing were 0.20-0.28 in the registered and breeding dog populations, respectively, decreasing to 0.09 and 0.14, respectively, following the introduction of DNA testing.

Identification and validation of quantitative trait loci (QTL) for canine hip dysplasia (CHD) in German Shepherd Dogs

Canine hip dysplasia (CHD) is the most common hereditary skeletal disorder in dogs. To identify common alleles associated with CHD, we genotyped 96 German Shepherd Dogs affected by mild, moderate and severe CHD and 96 breed, sex, age and birth year matched controls using the Affymetrix canine high density SNP chip. A mixed linear model analysis identified five SNPs associated with CHD scores on dog chromosomes (CFA) 19, 24, 26 and 34. These five SNPs were validated in a by sex, age, birth year and coancestry stratified sample of 843 German Shepherd Dogs including 277 unaffected dogs and 566 CHD-affected dogs. Mean coancestry coefficients among and within cases and controls were <0.1%. Genotype effects of these SNPs explained 20–32% of the phenotypic variance of CHD in German Shepherd Dogs employed for validation. Genome-wide significance in the validation data set could be shown for each one CHD-associated SNP on CFA24, 26 and 34. These SNPs are located within or in close proximity of genes involved in bone formation and related through a joint network. The present study validated positional candidate genes within two previously known quantitative trait loci (QTL) and a novel QTL for CHD in German Shepherd Dogs.

Analysis of heterophil to lymphocyte ratios in laying hens kept in a small group housing system

The objective of the present investigation was to assess the level of stress imposed on two different layer lines kept in a small group housing system Eurovent German with two group sizes and three tiers. A total of 615 Lohmann Selected Leghorn (LSL) and 633 Lohmann Brown (LB) hens were examined in four consecutive trials. Based on differential white blood cell counts, the heterophil to lymphocyte ratio (H/L-ratio) was calculated as an indicator of stress. The H/L-ratios significantly differed among the two layer lines, with 2.5-fold higher H/L-ratios in LB than in LSL. No significant differences across and within layer lines could be found between the different group sizes. A significant 0.7-fold decrease of the H/L-ratio could be shown in LSL layers when the space per hen was increased from 828 to 920 cm2.

Multiple loci associated with canine hip dysplasia (CHD) in German shepherd dogs

Canine hip dysplasia (CHD) is the most common hereditary skeletal disorder in dogs. To identify common alleles associated with CHD, we developed 37 informative single nucleotide polymorphisms (SNPs) within 13 quantitative trait loci (QTL) previously identified for German shepherd dogs. These SNPs were genotyped in 95 German shepherd dogs affected by CHD and 95 breed, sex, and birth year-matched controls. A total of ten SNPs significant at a nominal P value of 0.05 were validated in 843 German shepherd dogs including 277 unaffected dogs and 566 CHD-affected dogs. Cases and controls were sampled from the whole German shepherd dog population in Germany in such a way that mean coancestry coefficients were below 0.1 % within cases and controls as well as among cases and controls. We identified nine SNPs significantly associated with CHD within five QTL on dog chromosomes (CFA) 3, 9, 26, 33, and 34. Genotype effects of these nine SNPs explained between 22 and 34 % of the phenotypic variance of hip dysplasia in German shepherd dogs. The strongest associated SNPs were located on CFA33 and 34 within the candidate genes PNCP, TRIO, and SLC6A3. Thus, the present study validated positional candidate genes within five QTL for CHD.

Evaluation of bone strength, keel bone status, plumage condition and egg quality of two layer lines kept in small group housing systems

1. The aim of the present study was to determine the influence of large (54 or 60) and small (36 or 40) group sizes and tiers of the small group housing system "Eurovent German" on tibia and humerus bone breaking strength, keel bone status, plumage condition and egg quality for two commercial layer lines, Lohmann Selected Leghorn (LSL) and Lohmann Brown (LB), at the same stocking density (890 or 830 cm(2)/bird). 2. In 4 consecutive trials, 4752 hens were recorded for keel bone status. Evaluation of plumage condition was made for 1440 hens and bone breaking strength was recorded for 1200 hens. A total of 4962 eggs were analysed for internal and external egg quality traits. Analyses involved 30 small group compartments per trial. 3. The layer line had a much more pronounced influence on humerus breaking strength than on tibia breaking strength. 4. Plumage condition, particularly on the neck, was positively correlated with humerus breaking strength in both layer lines. 5. An average of 34% of LB and 23% of LSL hens showed keel bone deformities, with higher proportions of slight deformities. 6. Slight keel bone deformities, rather than moderate to severe, increased significantly during the laying period. 7. Stocking density had no influence on bone breaking strength, keel bone status and egg quality traits. 8. LB layers had a 1.4-fold higher humerus, but only a 1.06-fold higher tibia breaking strength compared to LSL layers. 9. Tibia breaking strength was significantly affected by the interaction of group size and layer line. LSL layers in small groups had lower tibia breaking strengths than those of the large groups.

Causes of death in calves with experimentally induced bovine neonatal pancytopenia (BNP)

The objective of this study was to identify the different causes of death in calves affected with bovine neonatal pancytopenia (BNP). A total of 51 precolostral calves were fed with colostrum from cows which had lost at least one calf after parturition due to BNP in previous lactations. Clinical BNP could be induced in 71% (36/51) and subclinical BNP in 20% (10/51) of the calves. 9% (5/51) of the calves stayed BNP-unaffected despite challenging with the same mixed colostrum and approved passive transfer of colostral antibodies. The case fatality rate in BNP-affected cases was 83% (38/46). In the 38 lethal BNP-cases gross-pathological and histopathological examinations were performed. BNP-induced haemorrhagic anaemia was the cause of death in 18 calves (47%). 19 of these lethal cases (50%) died due to infectious diseases, especially due to pneumonia, enteritis and septicaemia. One calf died due to severe enteritis and exsiccosis without any signs of BNP (3%). In conclusion, anaemia as the consequence of haemorrhages was the most prevalent cause of death in BNP-affected calves, however, BNP has been approved to increase the lethality of common infectious neonatal diseases.

[Phenotypic trends and breeding values for canine congenital sensorineural deafness in Dalmatian dogs]

In the present study, breeding values for canine congenital sensorineural deafness, the presence of blue eyes and patches have been predicted using multivariate animal models to test the reliability of the breeding values for planned matings. The dataset consisted of 6669 German Dalmatian dogs born between 1988 and 2009. Data were provided by the Dalmatian kennel clubs which are members of the German Association for Dog Breeding and Husbandry (VDH). The hearing status for all dogs was evaluated using brainstem auditory evoked potentials. The reliability using the prediction error variance of breeding values and the realized reliability of the prediction of the phenotype of future progeny born in each one year between 2006 and 2009 were used as parameters to evaluate the goodness of prediction through breeding values. All animals from the previous birth years were used for prediction of the breeding values of the progeny in each of the up-coming birth years. The breeding values based on pedigree records achieved an average reliability of 0.19 for the future 1951 progeny. The predictive accuracy (R2) for the hearing status of single future progeny was at 1.3%. Combining breeding values for littermates increased the predictive accuracy to 3.5%. Corresponding values for maternal and paternal half-sib groups were at 3.2 and 7.3%. The use of breeding values for planned matings increases the phenotypic selection response over mass selection. The breeding values of sires may be used for planned matings because reliabilities and predictive accuracies for future paternal progeny groups were highest.

Kongenitales embryonales Rhabdomyosarkom am Kopf eines rotbunten Deutsche-Holstein-Kalbes

Tumoren mit Skelettmuskeldifferenzierung sind bei den Haussäugetieren nur sehr selten zu beobachten. Es werden benigne Rhabdomyome von malignen Rhabdomyosarkomen unterschieden. Bei einem weiblichen Kalb der Rasse Deutsche Holstein wurde eine kongenitale, kugelförmige Umfangsvermehrung lateral in der Unterhaut des Kopfes festgestellt. Histologisch bestand die abgekapselte, expansive, zellreiche Umfangsvermehrung aus einem retikulären Maschenwerk kleiner, mäßig pleomorpher, spindelförmiger bis rundlicher Zellen in einem fibrovaskulären bis myxoiden Stroma sowie multifokalen, großen, plumpen, mehrkernigen, Myotuben-ähnlichen Zellen (strap cells). Mittels elektronenmikroskopischer Untersuchung wurden in den strap cells charakteristische zytoplasmatische Bündel von Myofilamenten und Z-Streifen nachgewiesen. Die kleinen spindelförmigen Zellen zeigten eine Immunreaktivität für Vimentin und die strap cells für Desmin. Die vorliegenden Ergebnisse entsprechen dem Befundspektrum eines bovinen kongenitalen embryonalen Rhabdomyosarkoms.

[Congenital embryonal rhabdomyosarcoma of the head in a red and white German Holstein calf]

Tumours with skeletal-muscle differentiation are rare in companion animals. They are differentiated into benign rhabdomyomas and malignant rhabdomyosarcomas. A female German Holstein calf displayed a congenital, spherical, subcutaneous mass at the lateral side of the head. Histology revealed an encapsulated, expansile, highly cellular mass consisting of a reticular meshwork of moderately pleomorphic, small spindle-shaped to round cells within a fibrovascular to myxoid stroma as well as multifocal, large, blunt, multinucleated myotube-like cells (strap cells). Electron microscopy demonstrated characteristic cytoplasmic bundles of myofilaments and Z-stripes within the strap cells. Immunoreactivity for vimentin was observed in the small spindle-shaped cells and for desmin in the strap cells. The results are consistent with the spectrum of findings characteristic for a bovine congenital embryonal rhabdomyosarcoma.