101
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Tiwari R, Dey D, Muller P, Sinha D. Practical Nonparametric and Semiparametric Bayesian Statistics (Lecture Notes in Statistics 137). J Am Stat Assoc 1999. [DOI: 10.2307/2669720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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102
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Dey D, Slomka PJ, Hahn LJ, Kloiber R. Comparison of ordered subsets expectation maximization and Chang's attenuation correction method in quantitative cardiac SPET: a phantom study. Nucl Med Commun 1998; 19:1149-57. [PMID: 9885805 DOI: 10.1097/00006231-199812000-00007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Photon attenuation is one of the primary causes of artifacts in cardiac single photon emission tomography (SPET). Several attenuation correction algorithms have been proposed. The aim of this study was to compare the effect of using the ordered subsets expectation maximization (OSEM) reconstruction algorithm and Chang's non-uniform attenuation correction method on quantitative cardiac SPET. We performed SPET scans of an anthropomorphic phantom simulating normal and abnormal myocardial studies. Attenuation maps of the phantom were obtained from computed tomographic images. The SPET projection data were corrected for attenuation using OSEM reconstruction, as well as Chang's method. For each defect scan and attenuation correction method, we calculated three quantitative parameters: average radial maximum (ARM) ratio of the defect-to-normal area, maximum defect contrast (MDC) and defect volume, using automated three-dimensional quantitation. The differences between the two methods were less than 4% for defect-to-normal ARM ratio, 19% for MDC and 13% for defect volume. These differences are within the range of estimated statistical variation of SPET. The calculation times of the two methods were comparable. For all SPET studies, OSEM attenuation correction gave a more correct activity distribution, with respect to both the homogeneity of the radiotracer and the shape of the cardiac insert. The difference in uniformity between OSEM and Chang's method was quantified by segmental analysis and found to be less than 8% for the normal study. In conclusion, OSEM and Chang's attenuation correction are quantitatively equivalent, with comparable calculation times. OSEM reconstruction gives a more correct activity distribution and is therefore preferred.
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103
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Dey D, Bochkariov DE, Jokhadze GG, Traut RR. Cross-linking of selected residues in the N- and C-terminal domains of Escherichia coli protein L7/L12 to other ribosomal proteins and the effect of elongation factor Tu. J Biol Chem 1998; 273:1670-6. [PMID: 9430711 DOI: 10.1074/jbc.273.3.1670] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Five different variants of protein L7/L12, each with a single cysteine substitution at a selected site, were produced, modified with 125I-N-[4-(p-azidosalicylamido)-butyl]-3-(2'-pyridyldithio)propion amide, a radiolabeled, sulfhydryl-specific, heterobifunctional, cleavable photocross-linking reagent that transfers radiolabel to the target molecule upon reduction of the disulfide bond. The proteins were reconstituted with core particles depleted of wild type L7/L12 to yield 70 S ribosomes. Cross-linked molecules were identified and quantified by the radiolabel. No cross-linking of RNA was detected. Two sites in the dimeric N-terminal domain, Cys-12 and Cys-33, cross-linked strongly to L10 and in lower yield to L11 but to no other proteins. The three sites in the globular C-terminal domain all cross-linked strongly to L11 and, in lower yield, to L10. Weaker cross-linking to 50 S proteins L2 and L5 occurred from all three C-terminal domain locations. The 30 S ribosomal proteins S2, S3, S7, S14, S18 were also cross-linked from all three of these sites. Binding of the ternary complex [14C]Phe-tRNA-elongation factor Tu.guanyl-5'-yl imidodiphosphate) but not [14C]Phe-tRNA.elongation factor Tu.GDP.kirromycin increased labeling of L2, L5, and all of the 30 S proteins. These results imply the flexibility of L7/L12 and the transient proximity of three surfaces of the C-terminal domain with the base of the stalk, the peptidyl transferase domain, and the head of the 30 S subunit.
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104
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Dey D, Boulton-Stone J, Emery A, Blake J. Experimental comparisons with a numerical model of surfactant effects on the burst of a single bubble. Chem Eng Sci 1997. [DOI: 10.1016/s0009-2509(97)00083-3] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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105
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Slomka P, Dey D. Review of instrumentation developments at the SNM 1996 annual meeting. J Nucl Med 1996; 37:25N-26N, 31N-33N. [PMID: 8790185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
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106
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Traut RR, Dey D, Bochkariov DE, Oleinikov AV, Jokhadze GG, Hamman B, Jameson D. Location and domain structure of Escherichia coli ribosomal protein L7/L12: site specific cysteine crosslinking and attachment of fluorescent probes. Biochem Cell Biol 1995; 73:949-58. [PMID: 8722010 DOI: 10.1139/o95-102] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
Five different variants of L7/L12 containing single cysteine substitutions, two in the N-terminal (NTD) and three in the C-terminal domain (CTD), were produced, modified with [125I]N-[4-(p-azidosalicylamido)butyl]-3-(2'-pyridyldithio) propionamide ([125I]APDP), a sulfhydryl-specific, heterobifunctional, cleavable photo-cross-linking reagent, and reconstituted into ribosomes. These were irradiated, the total proteins were extracted and reductively cleaved, and the cross-linked proteins were identified. The effect of zero-length disulfide cross-linking on binding and activity was also determined. The same sites in L7/L12 were used to attach a rhodamine dye. The formation of ground-state rhodamine dimers caused the appearance of a new absorption band at 518 nm that was used to estimate the extent of interaction of the probes in the free protein and in complexes with L10. The three sites in the CTD, but not the N-terminal sites, cross-linked to L2 and L5 and to 30S proteins S2, S3, S7, S14, and S18 in a manner influenced by elongation factors. Binding to the ribosome and, therefore, function were blocked by zero-length cross-linking within the NTD, but not the CTD. Binding also disrupted rhodamine dimers in the NTD. No rhodamine dimers formed in the CTD.
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107
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Opper C, Hennig J, Clement C, Laschefski U, Dey D, Dieckwisch J, Netter P, Wesemann W. Lowering of body temperature affects human platelet functions and norepinephrine release. Pharmacol Biochem Behav 1995; 51:217-21. [PMID: 7667331 DOI: 10.1016/0091-3057(94)00432-i] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The effect of lowering body temperature on plasma epinephrine, norepinephrine, and platelet density distribution and volume was studied in a placebo-controlled double-blind study. Lowering of body core temperature was induced by either exposure to a cold environment at a temperature of 5 degrees C (CT) or by a single dose of the 5-HT1A agonist ipsapirone (IPS). A third group exposed to an ambient temperature of 28 degrees C was given placebo (PLAC). All of the three groups were investigated in a climate chamber. In the CT group the density distribution of blood platelet subpopulations was shifted to an increase in less dense platelets that were more sensitive towards aggregation-inducing agents. The mean platelet volume in this subpopulation was decreased. Epinephrine was not affected, whereas the increase of norepinephrine was correlated with an increase of platelets that were more sensitive to aggregation-inducing agents in the CT group but not in the PLAC and IPS groups.
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108
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Dey D, Oleinikov AV, Traut RR. The hinge region of Escherichia coli ribosomal protein L7/L12 is required for factor binding and GTP hydrolysis. Biochimie 1995; 77:925-30. [PMID: 8834773 DOI: 10.1016/0300-9084(95)80003-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
A variant form of Escherichia coli ribosomal protein L7/L12 that lacked residues 42 to 52 (L7/L12: delta 42-52) in the hinge region was shown previously to be completely inactive in supporting polyphenylalanine synthesis although it bound to L7/L12 deficient core particles with the normal stoichiometry of four copies per particle (Oleinikov AV, Perroud B, Wang B, Traut RR (1993) J Biol Chem, 268, 917-922). The result suggested that the hinge confers flexibility that is required for activity because the resulting bent conformation allows the distal C-terminal domain to occupy a location on the body of the large ribosomal subunit proximal to the base of the L7/L12 stalk where elongation factors bind. Factor binding to the hinge-truncated variant was tested. As an alternative strategy to deleting residues from the hinge, seven amino acid residues within the putative hinge region were replaced by seven consecutive proline residues in an attempt to confer increased rigidity that might reduce or eliminate the bending of the molecule inferred to be functionally important. This variant, L7/L12:(Pro)7, remained fully active in protein synthesis. Whereas the binding of both factors in ribosomes containing L7/L12:delta 42-52 was decreased by about 50%, there was no loss of factor binding in ribosomes containing L7/L12:(Pro)7, as predicted from the retention of protein synthesis activity. The factor:ribosome complexes that contained L7/L12:delta 42-52 had the same low level of GTP hydrolysis as the core particles completely lacking L7/L12 and EF-G did not support translocation measured by the reaction of phe-tRNA bound in the A site with puromycin. It is concluded that the hinge region is required for the functionally productive binding of elongation factors, and the defect in protein synthesis reported previously is due to this defect. The variant produced by the introduction of the putative rigid Pro7 sequence retains sufficient flexibility for full activity.
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109
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Karmaker S, Ghosh AN, Dey D, Nair GB, Ganguly U. Ultrastructural changes in HeLa cells associated with enteroadherent Escherichia coli isolated from infants with diarrhoea in Calcutta. JOURNAL OF DIARRHOEAL DISEASES RESEARCH 1994; 12:274-8. [PMID: 7751569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
In the present study, we compared two enteroadherent Escherichia coli (EAEC) not belonging to the classical enteropathogenic O serotypes with respect to their attachment to and invasion of HeLa cells. Depending on the pattern of adherence to HeLa cells, one of the strains showed localized adherence (LA), and the other showed diffuse adherence (DA). Electronmicroscopic study showed that LA-EAEC produced the intimate attaching and effacing lesions and intracellular penetration in cultured HeLa cells. In contrast, DA-EAEC exhibited fimbrially-mediated adhesion to HeLa cells. Both LA and DA possessed morphologically distinct fimbriae. LA-EAEC expressed rod-like fimbriae, whereas fibrillar fimbriae were observed in DA strain. Ultrastructural study showed that the mechanisms of invasion by both the strains were different. LA-EAEC strains invaded the cells after pedestal formation and were enclosed in membrane-bound vacuoles. In contrast, DA-EAEC showed no membrane dissolution and pedestal formation during internalization of HeLa cells. A carefully controlled study will be necessary to establish the pathogenic role of DA-EAEC in diarrhoea.
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110
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Dey D, Basu Baul TS, Rivarola E. A Convenient Synthesis and Structural Assessment of [Sn(CH3)2(L2)](ClO4)2. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1993. [DOI: 10.1246/bcsj.66.1556] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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111
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Samoud A, Dey D, Brauner R, Doagi M, Kallel H, Boubaker S, Osman R, Ben Dridi MF. [Nesidioblastosis. Apropos of 12 new cases]. ANNALES DE PEDIATRIE 1990; 37:651-5. [PMID: 2291591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Two new cases of diffuse hyperplasia of the pancreas are reported. This infrequent condition is caused by intermittent and variable insulin hypersecretion. The hyperinsulinism is responsible for severe, lasting and intractable hypoglycemia that causes seizures and mental retardation. Onset usually occurs in the neonatal period. The diagnosis of hyperinsulinism rests on four criteria: the presence of increased insulin levels in the face of hypoglycemia, the low urinary excretion of ketone bodies during hypoglycemic episodes, the need for more than 15/mg/kg/min glucose to maintain the serum glucose level above 2 mmol/l, and a positive response to glucagon. The topographic diagnosis is often disappointing. Medical treatment of the hypoglycemia with diazoxide is a transient measure. Subtotal pancreatectomy is indispensable. Postoperative results are variable. Insulin deficiency diabetes mellitus is common and unusual in that insulin induces an exaggerated response. Recovery can be observed. If hypoglycemia recurs, diazoxide is often effective.
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112
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Dey D, Pradhan M, Das SB, Chakrabarti S. Precocious desynapsis of XY-bivalent in mouse germinal cells: influence of mitomycin C on tumour-bearing and normal mice. INDIAN JOURNAL OF EXPERIMENTAL BIOLOGY 1989; 27:757-60. [PMID: 2517268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A comparative study on the cytotoxic potential of anticancer-antibiotic mitomycin C has been made on tumour-bearing and normal mice considering precocious desynapsis of sex bivalent as parameter. The study indicates a strikingly differential effect of the drug on the phenomenon in two different types of mice. The administration of mitomycin C at therapeutic dose although enhances the frequency of precocious desynapsis of XY-bivalent in non-tumour (normal) mice to a significant extent (compared to control), the same drug at the same dose fails to produce a similar effect on tumour-bearing specimens. Discussions have been made on: (i) the probable cause for this differential effect, (ii) the mechanism of mitomycin action on precocious desynapsis of sex bivalent and, (iii) the possible significance of the findings in relation to cancer chemotherapy.
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113
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Dey D, Dutta S, Mohanty-Hejmadi P. Chondrification and osteological development of vertebral column in tadpoles of Microhyla ornata. AMPHIBIA-REPTILIA 1989. [DOI: 10.1163/156853889x00467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
AbstractChondrification and osteological development of vertebral column in the ornate frog, Microhyla ornata tadpoles has been studied by differential staining. At early stages of development the bones of vertebral column develop as cartilaginous structures. At different stages after chondrification, ossification starts in different components of the axial skeleton. The vertebral column ossifies between Taylor-Kollros stages XV and XXV. Chondrification as well as ossification occur proximodistally.
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114
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Khaldi F, Bennaceur B, Kanoun N, Dey D, Guerfala FR, Sammoud S. [A further case of progressive bulbopontine paralysis with deafness and optic atrophy]. ANNALES DE PEDIATRIE 1987; 34:731-3. [PMID: 3426085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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115
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De SK, Das S, Dey D. Multiple extra-nasopharyngeal extensions of juvenile nasopharyngeal angiofibroma. J Laryngol Otol 1987; 101:1083-7. [PMID: 2824642 DOI: 10.1017/s0022215100103275] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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116
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Chakrabarti S, Dey D, Das SB. Precocious disjunction of XY-bivalent in mouse germinal cells exposed in vivo to mitomycin C. INDIAN JOURNAL OF EXPERIMENTAL BIOLOGY 1986; 24:636-7. [PMID: 3108147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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117
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Dey D, Mishra RP, Agarwal SM. Larval recovery in tissues of thymectomized, bursectomized & splenectomized chickens vis-a-vis sham operated & controls during experimental ancylostomiasis. INDIAN JOURNAL OF EXPERIMENTAL BIOLOGY 1982; 20:867-8. [PMID: 7169233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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118
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Pitt TL, Dey D. A method for the detection of gelatinase production by bacteria. THE JOURNAL OF APPLIED BACTERIOLOGY 1970; 33:687-91. [PMID: 4995938 DOI: 10.1111/j.1365-2672.1970.tb02251.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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119
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Ghosh BN, Datta SP, Dey D. Some observations on the prevalence of atherosclerosis detected by 70 millimeter photofluorographic films amongst South Indian population in Pondicherry and their diet habits. Indian Heart J 1968; 20:305-15. [PMID: 5705270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
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