Response of Peanut, Pepper, Tobacco, and Tomato Cultivars to Two Biologically Distinct Isolates of Tomato spotted wilt virus

Spotted wilt disease, caused by Tomato spotted wilt virus (TSWV), is an economically important disease in peanut, pepper, tobacco, and tomato in the southeastern United States. However, very little is known about the biological variability existent in the virus population. Fourteen isolates of TSWV collected in Georgia were evaluated for symptom severity. The majority of the isolates produced severe systemic necrosis. One mild (GATb-1) and one severe (GAL) isolate were further examined because of the distinct differences in their virulence and symptomatology on tobacco. GATb-1 caused a few chlorotic spots and mild systemic symptoms, whereas GAL produced a large number of local lesions and severe systemic necrosis. Distinct differences in the response of selected commercial cultivars of peanut, tobacco, and tomato to GATb-1 and GAL infection were observed. GAL was lethal to a widely grown tobacco cultivar, K326. Georgia Green, a field resistant peanut cultivar, and C11-2-39, a breeding line with the highest level of known resistance to TSWV, were more susceptible to GAL than to GATb-1. BHN 444, a newly released TSWV-resistant tomato cultivar, showed a resistant reaction, whereas Stiletto, a newly released TSWV-resistant pepper cultivar, was susceptible to both GATb-1 and GAL isolates. Information on the biological diversity of TSWV may be useful in developing more durable TSWV-resistant crops.

Wild Allium spp. as Natural Hosts of Iris yellow spot virus

The incidence of Iris yellow spot virus (IYSV) of genus Tospovirus, family Bunyaviridae in a commercial onion crop was first confirmed in Washington state during 2003 (1). First found in Adams County, IYSV has rapidly spread to all onion-producing counties in the state, affecting seed and bulb crops. The USDA-ARS Western Regional Plant Introduction Station (WRPIS) collects, maintains, and distributes various Allium (garlic and onion) accessions. As part of the regeneration process, accessions are grown under field conditions at the WRPIS farms in two locations: Pullman and Central Ferry, WA. Symptoms indicative of viral infection, now known to be caused by IYSV, first appeared in field-grown accessions in 1999. In June 2005, leaf and scape tissues were collected from WRPIS accessions of wild onions (Allium pskemense, A. vavilovii, and A. altaicum) in Central Ferry that had symptoms indicative of IYSV infection (2). IYSV infection was confirmed using enzyme-linked immunosorbent assay with a commercially available kit (Agdia Inc., Elkhart, IN). Virus infection was further verified using reverse transcription-polymerase chain reaction (RT-PCR) with primers derived from the small (S) RNA of IYSV. The primers flanked the IYSV N gene (5'-TAA AAC AAA CAT TCA AAC AA-3' and 5'-CTC TTA AAC ACA TTT AAC AAG CAC-3'). RT-PCR gave a PCR product of expected size (≈1.2 kb). The DNA amplicon was cloned and sequenced. Nucleotide sequence comparisons with known IYSV N gene sequences showed 95 to 98% sequence identity. The prevalence of the vector, onion thrips (Thrips tabaci), combined with the widespread incidence of IYSV in seed and bulb production areas of the state may have resulted in natural infection of wild relatives of cultivated onion. The potential role of wild Allium spp. in IYSV epidemiology remains to be determined. Information on the extent of IYSV infection of onion germplasm would be useful in identifying potential sources of host plant resistance to IYSV. References: (1) L. J. du Toit et al. Plant Dis. 88:222, 2004. (2) B. Hellier et al. APSnet Image of the Week. Online publication, iw000049.asp, 2004.

Sequence diversity of the nucleoprotein gene of iris yellow spot virus (genus Tospovirus, family Bunyaviridae) isolates from the western region of the United States

Iris yellow spot virus (IYSV), a tentative virus species in the genus Tospovirus and family Bunyaviridae, is considered a rapidly emerging threat to onion production in the western United States (US). The present study was undertaken to determine the sequence diversity of IYSV isolates from infected onion plants grown in California, Colorado, Idaho, Oregon, Utah and Washington. Using primers derived from the small RNA of IYSV, the complete sequence of the nucleoprotein (NP) gene of each isolate was determined and the sequences compared. In addition, a shallot isolate of IYSV from Washington was included in the study. The US isolates of IYSV shared a high degree of sequence identity (95 to 99%) with one another and to previously reported isolates. Phylogenetic analyses showed that with the exception of one isolate from central Oregon and one isolate from California, all the onion and shallot isolates from the western US clustered together. This cluster also included onion and lisianthus isolates from Japan. A second distinct cluster consisted of isolates from Australia (onion), Brazil (onion), Israel (lisianthus), Japan (alstroemeria), The Netherlands (iris) and Slovenia (leek). The IYSV isolates evaluated in this study appear to represent two distinct groups, one of which largely represents isolates from the western US. Understanding of the population structure of IYSV would potentially provide insights into the molecular epidemiology of this virus.

Iris yellow spot virus in Onion in Chile

Iris yellow spot virus (IYSV) (genus Tospovirus, family Bunyaviridae) has become endemic in several parts of the world. Between 2000 and 2004, the virus was reported from several states in the United States and the most recent report was from Georgia (2). In South America, IYSV was first reported from Brazil (3). Symptoms indicative of IYSV infection (1), such as diamond-shaped and irregular chlorotic and necrotic lesions, were observed during 2004 and 2005 in onion fields in Colina and Tiltil (Chacabuco Province) and Rengo (Cachapoal Province) located in central Chile. In the sampled fields, as much as 50% of the crop showed symptoms. In all three locations, the crop was destined for bulb production and the cultivar was a long-day Valenciana-type. Approximately 50 and 5 ha in Chacabuco and Cachapoal provinces, respectively, were surveyed. Symptomatic plants were collected and tested in the laboratory for confirmation of IYSV infection. A commercially available IYSV-specific enzyme-linked immunosorbent assay kit was used (Adgen Limited, Ayr, Scotland, UK) that confirmed the samples were infected with IYSV. Total nucleic acids were extracted, and using primers flanking the nucleoprotein (NP) gene of IYSV, reverse transcription-polymerase chain reaction was used to verify virus identity. Primer sequences were 5'-TAA AAC AAA CAT TCA AAC AA-3' and 5'-CTC TTA AAC ACA TTT AAC AAG CAC-3'. The resulting 1.2-kb DNA amplicons from five samples were cloned and sequenced (GenBank Accession No. DQ150107). Nucleotide sequence comparisons with known IYSV NP gene sequences showed 95 to 98% identity, confirming the virus as IYSV. The presence of IYSV in Brazil and now in Chile indicates its potential to become established in onion crops in the region. References: (1) L. J. du Toit et al. APSnet Image of the Week. http://apsnet.org/online/archive/2003/IW000030.asp , 2003. (2) S. W. Mullis et al. Plant Dis. 88:1285, 2004. (3) L. Pozzer et al. Plant Dis. 83:345, 1999.

First Report of Onion yellow dwarf virus, Leek yellow stripe virus, and Garlic common latent virus in Garlic in Washington State

Washington State ranks fourth in the country in garlic (Allium sativum) production (2). The impact of viruses on garlic production may be significant in Washington State, but little is known about the occurrence or identity of specific viruses (2). The USDA-ARS Western Regional Plant Introduction Station (WRPIS) collects, maintains, and distributes garlic accessions. As part of the regeneration process, accessions are grown in field conditions at the WRPIS farm in Pullman, WA. In June 2004, several WRPIS accessions developed symptoms indicative of viral infection, primarily chlorotic spots and yellow stripes on leaves and scapes. Cultivars Georgia Fire and Georgia Crystal showed more than 90% incidence of symptomatic plants. Some chlorotic spots appeared similar to those caused by Iris yellow spot virus on other Allium spp. such as A. cepa. However, enzyme-linked immunosorbent assay (ELISA), as well as polymerase chain reaction (PCR) with IYSV-specific primers (1) did not reveal the presence of IYSV. Degenerate, group-specific primers to potyviruses (3) and carlaviruses (courtesy of S. D. Wyatt) were used on total nucleic acids extracted from each symptomatic plant with reverse transcription (RT)-PCR. The samples (n = 26) gave an RT-PCR product of the expected size with the group-specific potyvirus RT-PCR test. One sample was positive with the carlavirus group RT-PCR test. RT-PCR products from both tests were cloned and sequenced. Comparisons with sequences in GenBank showed that all but one had Onion yellow dwarf virus (OYDV), whereas one sample had a mixed infection of OYDV and Leek yellow stripe virus. Sequence analysis showed that the carlavirus was Garlic common latent virus. Sequence identities ranged from 95 to 99% for each of the viruses when compared with those available in GenBank. All samples were then tested for each of these viruses with commercially available antisera. Results of ELISA confirmed the findings of RT-PCR. To our knowledge, this is the first report for each of these garlic viruses from Washington State. This finding prompts the need for evaluating all garlic accessions for the potential impact of these viruses on garlic germ plasm conservation and distribution. References: (1) L. J. du Toit et al. Plant Dis. 88:222, 2004. (2) R. M. Hannan and E. J. Sorensen. Crop Profile for Garlic in Washington. Washington State University Coop Extension and the U.S. Department of Agriculture, 2002. (3) S. S. Pappu et al. J. Virol. Methods 41:9, 1993.

Outbreak of Iris yellow spot virus in Onion Seed Crops in Central Oregon

Iris yellow spot virus (IYSV) of the genus Tospovirus, family Bunyaviridae is considered an emerging or reemerging pathogen affecting onions in the United States. The virus has been endemic to the Treasure Valley of southern Idaho for more than a decade (4). Reports of its further spread came from several states in the region, most recently from New Mexico and Washington (1,3). During the 2004 growing season, a few onion seed crops near Madras (Jefferson County) in central Oregon showed symptoms suggestive of IYSV infection, including characteristic diamond-shaped scape lesions (2). By July, scapes in one-half of a 4-ha field were 100% symptomatic and 95% lodged, leading to nearly total crop failure; in the other half, scapes were 30 to 40% symptomatic and 15% lodged, with symptoms and lodging increasing weekly at 8 weeks before harvest. The half of this crop with greater incidence was immediately adjacent to a field where very limited IYSV-like symptoms were noticed in a 2002-2003 onion seed crop that was harvested in mid-August 2003, after the highly symptomatic 2003-2004 onion seed crop was planted next to it in early July 2003. Both crops were planted from true seed. In another onion seed crop located 1,000 m away, IYSV-like symptoms were abundant around the field edges in July and through the field in August 2004, with approximately 5% lodging by mid-August. A small number of plants with IYSV-like symptoms were present in a few more distant fields, but not in most onion seed fields in central Oregon. Symptomatic plants were collected and tested in the laboratory for confirmation of IYSV infection. IYSV was confirmed using enzyme-linked immunosorbent assay (ELISA) with a commercially available antiserum (Agdia Inc., Elkhart, IN). Total nucleic acids were extracted, and using primers specific to the nucleocapsid (N) gene of IYSV (3), reverse transcription-polymerase chain reaction (RT-PCR) was done. RT-PCR gave DNA amplicons of the expected size. The DNA amplicons were cloned and sequenced. Nucleotide sequence comparisons with known IYSV N gene sequences confirmed virus identity. The rapid spread of IYSV in the Pacific Northwest and its severity of incidence often leading to 100% incidence is a cause for concern for onion growers and industry. Efforts to identify management practices to reduce its impact have to be undertaken on a regional basis because of its widespread occurrence across several states in the northwestern United States. References: (1) R. Creamer et al. Plant Dis. 88:1049, 2004 (2) L. J. du Toit et al. APSnet image of the week. On-line publication: http://apsnet.org/online/archive/ 2003/IW000030.asp , 2003. (3) L. J. du Toit et al. Plant Dis. 88:222, 2004. (4) J. M. Hall et al. Plant Dis. 77:952, 1993.

Tactics for management of thrips (Thysanoptera: Thripidae) and tomato spotted wilt virus in tomato

Four studies were conducted in Georgia during spring 1999, 2000, 2001, and 2002 to evaluate various management tactics for reducing thrips and thrips-vectored tomato spotted wilt virus (TSWV) in tomato and their interactions relative to fruit yield. Populations of thrips vectors of TSWV, Frankliniella occidentalis (Pergande) and Frankliniella fusca (Hinds), were determined using flower and sticky trap samples. The management practices evaluated were host plant resistance, insecticide treatments, and silver or metallic reflective mulch. Averaged over all tests, the TSWV-resistant tomato 'BHN444' on silver mulch treatment had the largest effect in terms of reducing thrips and spotted wilt and increasing marketable yield. Of the insecticide treatments tested, the imidacloprid soil treatment followed by early applications of a thrips-effective foliar insecticide treatment provided significant increase in yield over other treatments. Tomato yield was negatively correlated with the number of F. fusca and percentage of TSWV incidence. F. occidentalis per blossom was positively correlated with percentage of TSWV incidence, but not with yield. No significant interactions were observed between cultivar reflective mulch main plot treatments and insecticide subplot treatments; thus, treatment seemed to be additive in reducing the economic impact of thrips-vectored TSWV. Control tactics that manage thrips early in the growing season significantly increased tomato yield in years when the incidence of TSWV was high (>17%).

Field Evaluation of Tomato spotted wilt virus Resistance in Transgenic Peanut (Arachis hypogaea)

Spotted wilt, caused by Tomato spotted wilt virus (TSWV), is a devastating disease of many crops including peanut (Arachis hypogaea). Because the virus has a broad host range and is spread by ubiquitous thrips, disease management by traditional means is difficult. Developing new peanut cultivars with resistance to TSWV presents a significant challenge since existing genetic resistance in peanut germ plasm is limited. A genetic engineering approach appears to have great potential for resistance enhancement to TSWV. Transgenic peanut progenies that expressed the nucleocapsid protein of TSWV were subjected to natural infection of the virus under field conditions during the growing seasons of 1999 and 2000 in Tifton, GA, and in three locations (Tifton, GA, Marianna, FL, and Headland, AL) in 2001. Significantly lower incidence of spotted wilt was observed for the transgenic progeny in comparison to the nontransgenic checks in the field (in multiple years and locations) as well as during challenge inoculation under controlled environmental conditions. This transgenic event could potentially be used in a traditional breeding program to enhance host resistance.

Iris Yellow Spot Virus in Onion Bulb and Seed Crops in Washington

The geographic distribution of Iris yellow spot virus (IYSV, Genus Tospovirus, Family Bunyaviridae) in onion (Allium cepa L.) crops in the western United States has increased with the most recent report in Colorado (1,4). Furthermore, the incidence of IYSV has increased significantly in onion crops in the Treasure Valley of southern Idaho and eastern Oregon, where the disease was first detected in the United States (1,2). Surveys of onion seed crops in Washington during the past 2 years showed the presence of plants with symptoms characteristic of IYSV infection, including distinct diamond-shaped chlorotic or necrotic lesions, as well as indistinct circular to irregular, chlorotic or necrotic lesions of various sizes on the scapes of flowering plants. To date, symptomatic plants have been observed in five seed crops in Washington, at incidences ranging from <1% to approximately 20% in individual seed crops. Enzyme-linked immunosorbent assays carried out directly on symptomatic onion samples collected in July 2002, and on Nicotiana benthamiana plants mechanically inoculated with sap from these symptomatic plants, did not detect the presence of IYSV. In late July 2003, symptomatic plants were collected from an onion seed crop in Grant County and tested for IYSV infection by reverse transcription-polymerase chain reaction (RT-PCR). Total nucleic acid was extracted from symptomatic areas of the scapes with the procedure described by Presting et al. (3). Primers specific to the nucleocapsid (NP) gene of IYSV were designed based on sequences in GenBank: 5'-TCA GAA ATC GAG AAA CTT-3' and 5'-TAA TTA TAT CTA TCT TTC TTG G-3' (sense and antisense polarity, respectively). The RT-PCR assay produced an amplicon of the expected size (approximately 700 bp) that was cloned and sequenced. Comparison with the GenBank IYSV gene sequences showed 98% sequence identity of the NP gene. In August 2003, symptoms of IYSV infection were observed in two onion bulb crops, each located within 2 miles of the symptomatic onion seed crop in Grant County. The presence of IYSV in these crops was confirmed by RT-PCR with cloning and sequencing of the amplicon, as described for the seed crop samples. To our knowledge, this is the first confirmation of IYSV in onion bulb and seed crops in Washington, where 16,000 to 18,000 acres of onion bulb crops and 700 to 900 acres of onion seed crops are grown annually (USDA National Agricultural Statistics Service). The increase in prevalence of IYSV in the Pacific Northwest highlights the need for additional research to clarify the epidemiology of this potentially significant pathogen and to develop a regional management program for iris yellow spot. References: (1) J. M. Hall et al. Plant Dis. 77:952, 1993. (2) J. W. Moyer et al. (Abstr.) Phytopathology 93(suppl.):S115, 2003. (3) G. G. Presting et al. Phytopathology 85:436, 1995. (4) H. F. Schwartz et al. Plant Dis. 86:560, 2002.

Differential Response of Selected Peanut (Arachis hypogaea) Genotypes to Mechanical Inoculation by Tomato spotted wilt virus

Screening of peanut germ plasm for resistance to Tomato spotted wilt virus (TSWV) has been largely inefficient due to the lack of a screening technique based on mechanical transmission of the virus under controlled environmental conditions. We have studied the reaction of three peanut cultivars (Georgia Green, Georgia Runner, C-99R) and one breeding line (C11-2-39) using a highly efficient mechanical inoculation procedure. The disease response was studied at two temperature regimes, 25 to 30°C (low temperature) and 30 to 37°C (high temperature). Based on percent transmission, symptomatology, distribution of TSWV, and relative levels of TSWV nucleocapsid (N) protein, Georgia Runner and Georgia Green were found to be susceptible, whereas C-99R and C11-2-39 were resistant. Of the four genotypes tested, C11-2-39 had the highest level of resistance to TSWV. The results correlated with the field performance of the genotypes except in the case of Georgia Green, which could not be distinguished from TSWV-susceptible Georgia Runner. Exposure of the inoculated plants to higher temperature (30 to 37°C) resulted in a better resistant response as reflected by reduced systemic infection, localized symptom expression, restricted viral movement, and reduced levels of TSWV antigen. To our knowledge, this is the first report of differential response of peanut genotypes to TSWV using mechanical inoculation. The four peanut genotypes should be useful as reference standards for the initial screening and identification of sources of TSWV resistance in peanut germ plasm.

Factors Affecting Mechanical Transmission of Tomato spotted wilt virus to Peanut (Arachis hypogaea)

Evaluation of peanut germ plasm for Tomato spotted wilt virus (TSWV) resistance has been slowed by the difficulty in achieving a high rate of mechanical transmission of the virus to peanut. In this study, improvements were made and a highly efficient mechanical transmission protocol was developed. Several factors that affect the transmission efficiency were identified. Use of two antioxidants (sodium sulfite and mercaptoethanol) and two abrasives (Celite and Carborundum) and application of the inoculum by rubbing with a cotton swab dipped in the inoculum as well as pricking with an inoculation needle resulted in a significantly higher transmission rate. The most susceptible growth stage of peanut to TSWV inoculation was 2 to 3 days after germination (6 to 7 days after planting). The inoculation protocol consistently resulted in a higher percentage of infected plants from different sources of inoculum such as infected peanut, tobacco, and tomato.

RT-PCR Detection of Seedborne Cowpea aphid-borne mosaic virus in Peanut

The Brazilian strain of Cowpea aphid-borne mosaic virus (CABMV) is a severe pathogen in peanut and a significant problem when distributing germ plasm to other countries. The virus is seedborne at approximately 0.15% in peanut, depending upon the cultivar, and its detection in seed lots would strengthen quarantine programs. Utilizing 3' sequence data (GenBank Accession #AF241233), primers were designed from the coat protein region and evaluated by reverse transcription-polymerase chain reaction (RT-PCR). Use of the forward primer 5'-CGCTCAAACCCATTGTAGAA-3' and reverse primer 5'-TATTGCTTCCCTTGCTCTTTC-3' yielded a 221-bp product. Extracts of thick seed slices and a sample size of 12 to 25 seed showed no significant advantage of RT-PCR over enzyme-linked immunosorbent assay (ELISA) in tests of large seed lots. However, RT-PCR detected more virus in seed than in the number of infected seedlings normally arising in germination tests. Also, RT-PCR was extremely sensitive and detected 1 infected leaf among 99 healthy leaves. In contrast, ELISA detected only one infected leaf among nine healthy leaves.

Outbreak of Tomato spotted wilt virus in Tomato in Kenya

Tomato spotted wilt virus (TSWV) of the genus Tospovirus, family Bunyaviridae (1), causes an economically important virus disease in tomato in several parts of the world. The virus has a wide host range that includes numerous crops and weeds and is transmitted by at least seven species of thrips. Tomato crops in the Subukia, Bahati, and Kabazi areas of the Nakuru District in Kenya were affected by a disease suggestive of TSWV infection during the November 1999 to March 2000 tomato-growing season. Farmers reported up to 80% losses of their potential yields. Characteristic symptoms were noticed on fruits, especially when they were green. Distinct concentric rings on fruits, which later turned into brown, uneven ripening, were the most visible symptoms. Foliage did not develop pronounced symptoms, but mild bronzing was observed in a few cultivars. However, foliage senesced prematurely, starting with older leaves. Foliar symptoms were mistaken for blight infection, and as a result, excessive fungicides were applied that failed to manage the disease. To test for TSWV infection, tomato leaf samples collected from the fields were tested initially with a TSWV test kit (HortiTech, Horticulture Research International, Wellesbourne, UK), and the results were confirmed by double-antibody sandwich-enzyme-linked immunosorbent assay with antibodies from Agdia Inc. (Elkhart, IN). Further molecular characterization was done using reverse transcription-polymerase chain reaction (RT-PCR). Total RNA was extracted from symptomatic leaves of tomato cv. Money Maker using the RNeasy mini kit (Qiagen Inc., Valencia, CA). Using primers 5' TTAAGC AAGTTCTGTGAG 3' and 5' ATGTCTAAGGTTAAGCTC 3' specific to the nucleoprotein (N) gene of TSWV, the N gene was amplified by RT-PCR (2). A 777-bp product of the expected size was obtained from symptomatic plants, whereas no amplification was obtained from noninfected tomato. The PCR product was cloned into pGEM-T Easy (Promega, Madison, WI) and sequenced. A search of GenBank revealed a sequence identity of 95 to 99% with the N genes of known TSWV isolates. To our knowledge, this is the first report TSWV infection of tomato in Kenya. Considering its wide host range, future surveys should be directed toward estimating its incidence in tomato and other TSWV-susceptible crops, such as Irish potatoes, pepper, peanut (groundnut), beans, and a wide variety of ornamental cut flowers in Kenya. References: (1) J. W. Moyer. Tospoviruses (Bunyaviridae). Pages 1803-1807 in: Encyclopedia of Virology. A. Granoff and R. G. Webster, eds. Academic Press, San Diego, CA, 1999. (2) Jain et al. Plant Dis. 82:900, 1998.

First Report of Peanut stripe virus (Family Potyviridae) in South Korea

Severe mosaic symptoms resembling those reported for a blotch isolate of Peanut stripe virus (PStV) (1) were observed in the year 1998 in Suwon, South Korea, on several peanut cultivars. The incidence of the virus was as high as 100% in cv. Daekwang. The virus was seed transmitted to varying degrees depending on the cultivar and a maximum seed transmission of 15.7% was observed in cv. Aul. Electron microscopic examination of leaf dip preparations showed filamentous rods having modal length of 720 nm. Viral inclusion bodies in infected cells were of pinwheel, scroll, and laminated aggregates. The 3' terminal region of the viral genome was amplified using degenerate primers (2) and the resulting approximately 700 bp fragment was cloned and sequenced. GenBank searches using the 709 nucleotides consisting of the complete 3'-untranslated region and a part of the coat protein gene showed that the virus shared 98% sequence identity with the currently known PStV isolates. To our knowledge, this is the first report of PStV in the Republic of Korea. References: (1) J. W. Demski et al. Ann. Appl. Biol. 105:495, 1984. (2) S. S. Pappu et al. J. Virol. Methods 41:9, 1993.

Distribution and Characteristics of Groundnut Rosette Disease in Kenya

Groundnut rosette is a major virus disease of peanut in sub-Saharan Africa. The disease is caused by a complex of three agents: GRAV (groundnut rosette assistor luteovirus), GRV (groundnut rosette umbravirus), and the associated satellite RNA (Sat-RNA). During the 1997 to 1998 crop season, the incidence of rosette in farmers' fields was estimated at 24 to 40% in western Kenya and 30% in the Rift Valley. Sequence analysis of Kenyan isolates revealed that GRAV-CP sequences shared 97 to 100% and 95 to 98% sequence homology at nucleotide and amino acid levels, respectively, amongst themselves and with the Malawian and Nigerian isolates. The ORFs 3 and 4 of GRV were similar, with a homology of 99% at the nucleotide and amino acid levels among Kenyan isolates. The GRV sequences of Kenyan isolates were closer to the Malawian (95 to 96%) than to the Nigerian (87 to 88%) isolates. Sat-RNA shared 89 to 94% nucleotide identity with those from Malawi and Nigeria. A closer sequence relationship was observed between Kenyan and Malawian isolates in all regions compared. This is the first report on the distribution and molecular characterization of groundnut rosette disease complex in East Africa.

First Report of Cabbage leaf curl virus (Family Geminiviridae) in Georgia

Cabbage and collard greens were inflicted with a previously undescribed virus-like disease during the fall 2000. Symptoms on leaves were yellow spots, vein clearing, mosaic, curling, and puckering. Symptomatic plants were widespread in Brooks, Colquitt, Grady, and Pierce counties in Georgia. Disease incidence ranged from 10 to 20% in the majority of the fields surveyed but some fields had 100% incidence. Fields were heavily infested by Bemisia argentifolii and the symptoms were suggestive of a whitefly-transmitted geminivirus infection. A polymerase chain reaction (PCR)-based diagnostic test for geminivirus was conducted. Total DNA was extracted from symptomatic cabbage and collard green plants collected from commercial fields. The two primers, 5'-GCCCACATYGTCTTYCCNGT-3' and 5'- GGCTTYCTRTACATRGG-3' (2,3), are "universal" for genus Begomovirus of family Geminiviridae. The primer pair could amplify a part of the replicase-associated protein and coat protein and the complete common region of DNA-A. The PCR gave a DNA band of expected size (1.1 kb) from both symptomatic cabbage and collard green samples, whereas no such product was obtained from healthy samples, suggesting that the causal agent could be a geminivirus. To establish the identity of the virus, the 1.1 kb PCR product was cloned into pGEM-T Easy (Promega) and sequenced. GenBank search showed that the geminivirus isolated in Georgia was most closely related (98% sequence identity) to Cabbage leaf curl virus (accession number U65529) reported from Florida (1). The virus was mechanically transmitted to healthy cabbage and collard green plants under experimental conditions. To our knowledge, this is the first report of Cabbage leaf curl virus from Georgia. References: (1) A. M. Abouzid et al. Phytopathology 82:1070, 1992. (2) S. S. Pappu et al. Plant Dis. 84:370, 2000. (3) M. R. Rojas et al. Plant Dis. 77:340-347, 1993.

Management of Tomato spotted wilt virus in Flue-Cured Tobacco with Acibenzolar-S-Methyl and Imidacloprid

Tomato spotted wilt virus (TSWV) continues to be a major production constraint in flue-cured tobacco in Georgia. Pretransplant applications of acibenzolar-S-methyl (Actigard) and imidacloprid (Admire and Provado) were evaluated in field trials, singly and in combination, in four locations in 1999. Acibenzolar-S-methyl was also evaluated for its effect on growth and yield, potential phytotoxicity, and activity against tobacco blackshank incited by Phytophthora parasitica var. nicotianae. Acibenzolar-S-methyl alone and with imidacloprid significantly reduced TSWV incidence in all four locations, but the disease incidence in the imidacloprid-treated plots was lower in only one of the four sites. Applications of acibenzolar-S-methyl starting at 4 weeks posttransplant had no effect on TSWV incidence, size, or yield of tobacco compared with nontreated plots. Acibenzolar-S-methyl did not reduce blackshank in a field trial. In the greenhouse, rates of acibenzolar-S-methyl ranging from 0.25 to 8 g a.i. per 7,000 plants showed reductions in growth that did not seem to be related to rate. Pretransplant applications of acibenzolar-S-methyl were critical to the suppression of TSWV, while initial applications made posttransplant had no effect, suggesting that plants must be protected prior to introduction into the field.

Progress on strain differentiation of Citrus tristeza virus and its application to the epidemiology of citrus tristeza disease

Citrus tristeza virus (CTV) occurs in most citrus producing regions of the world, and it is the most serious viral pathogen of citrus. With the recent establishment of the brown citrus aphid, Toxoptera citricida, its most efficient vector, on Madeira Island (Portugal) and in Florida (USA) and the countries of the Caribbean Basin, the impact of CTV is likely to increase in these regions. Since there are many strains of CTV and CTV infections frequently occur as mixtures of several strains, it is necessary to be able to distinguish the strains for regulatory purposes, disease management and epidemiology. We describe the evolution of techniques developed to detect CTV and to differentiate the individual strains, and present the results of tests using these latest methods on CTV isolates from mainland Portugal, Madeira Island and Florida. Mild and decline-inducing strains of CTV were detected in mainland Portugal and mild, decline-inducing and severe stem pitting strains on Madeira Island. In Florida we demonstrated the presence of infections that reacted with probes made against stem pitting strains not previously detected there. It is concluded that CTV presents a significant threat to citrus production in mainland Portugal, on Madeira Island and in the neighbouring countries of the Mediterranean Basin, as well as in Florida, elsewhere in the USA and throughout the Caribbean Basin, especially following the widespread establishment of T. citricida throughout the region.

First Report of Tomato spotted wilt virus in Habanero and Tabasco Peppers in Florida

In spring 2000, symptoms similar to thrips-vectored spotted wilt disease caused by Tomato spotted wilt virus (TSWV) were observed on habanero (Capsicum chinense) and tabasco (Capsicum frutescens) peppers in north Florida. Habanero peppers were from commercial fields grown for specialty markets and tabasco peppers were from research plots. Symptoms observed were leaf necrosis, fruit drop, necrotic stem lesions, and stunting. Fruit symptoms included chlorotic and necrotic spotting and distinct ring pattern and distortion. The incidence of symptomatic habanero peppers was 7 to 8% in one of the three production fields visited, and a lower incidence in two other fields (all in Jackson County). In tabasco pepper, TSWV was detected in spring and fall 1999, and spring 2000 seasons in 10 to 15% of the plants (Gadsden County). Adjacent tomato fields contained scattered plants exhibiting symptoms of TSWV. Diagnosis of TSWV from symptomatic stems, leaves, and fruit of habanero and tabasco peppers was confirmed by a double antibody sandwich enzyme linked immunosorbent assay (ELISA) using a commercially available kit (Agdia Inc., Elkhart, IN). ELISA values ranged from 1.57 to 1.95 for habanero pepper and 0.80 to 0.95 for tabasco pepper. The mean ELISA value of the negative controls was 0.001. To further verify TSWV infection, immunocapture reverse transcription-polymerase chain reaction (IC-RT-PCR) was performed (1). The primer pair 5'-ATGTCTAAGGTTAAGCTC-3' and 5'-TTAAGCAAGTTCTGTGAG-3' represented the first and last 18 bases of the coding region of the nucleocapsid gene of TSWV, respectively, and produces approximately 800 bp PCR product (1). IC-RT-PCR gave a single DNA band of expected size in both habanero and tabasco samples, while no amplification was found in an uninfected pepper sample. This is the first report of TSWV on habanero and tabasco peppers in Florida. TSWV continues to be an economically important disease constraint to the production of tomato, pepper (C. annuum), peanut, and tobacco in the southeastern United States (observations from Georgia and Florida). Meanwhile, the known host range is expanding to include new species of cultivated vegetables. References: (1) R. K. Jain et al.. Plant Dis. 82:900, 1998.

First Report of Tomato spotted wilt virus Infection of Tomatillo in Georgia

During the 2000 spring season, tomatillo (Physalis ixocarpa) plants showing chlorotic streaks on leaves were observed in an experimental plot of the University of Georgia's Coastal Plain Experiment Station in Tift County, GA. Leaf samples from 192 plants were collected. These included plants that had chlorotic streaks and those without obvious symptoms. Samples were tested by ELISA using a commercially available Tomato spotted wilt virus (TSWV) detection kit (Agdia Inc., Elkhart, IN). TSWV was found in 10 samples that had chlorotic streaks on leaves, and the remaining plants with no obvious symptoms were negative for TSWV. Infected plants were found in both cultivars, Verde Puebla and Toma Verde. The presence of the virus had no apparent effect on plant size or fruit appearance. TSWV infection of the ELISA-positive samples was further verified by immunocapture reverse transcription-polymerase chain reaction (IC-RT-PCR) (1). The primer pair (5'-ATGTCTAAGGTTAAGCTC-3' and 5' TTAAGCAAGTTCTGTGAG-3') represented the first and last 18 bases of the coding region of the nucleocapsid gene of TSWV, respectively, and produced approximately 800-bp PCR product (1). IC-RT-PCR gave a single DNA band of expected size and no amplification was found in the uninfected control. This is the first report of TSWV on tomatillo in Georgia. Reference: (1) R. K. Jain et al. Plant Dis. 82:900, 1998.

A Severe Outbreak of Tobacco mosaic virus in Georgia's Flue-Cured Tobacco

During the 2000 growing season, tobacco plants showing blotching of the leaves with light and dark green areas suggestive of Tobacco mosaic virus (TMV) infection were observed in several counties in Georgia. Symptomatic plants appeared in the field within 4 weeks after transplanting. The incidence in individual fields was as high as 100%. A survey was conducted in several tobacco-growing counties, and the presence of TMV was verified by enzyme-linked immunosorbent assay (ELISA). Symptomatic plants were collected from the following 20 counties: Appling, Bacon, Berrien, Coffee, Colquitt, Cook, Echols, Evans, Grady, Irwin, Jeff Davis, Lanier, Lowndes, Montgomery, Pierce, Tattnall, Tift, Toombs, Ware, and Wayne. Of the 79 samples tested by ELISA, TMV was found to be present in 76 samples. This high degree of incidence of TMV in Georgia's tobacco has not been observed in the past. Although the specific reasons are not clear, all severe cases of TMV were observed in two varieties, NC71 and NC72, or plants of other varieties out of beds or plant houses that held these two varieties and were clipped with the same mower. While TMV and Potato virus Y (PVY) were found most prevalent in Georgia's flue-cured tobacco in 1999 (2), none of the plants tested were positive for PVY in 2000. Cucumber mosaic virus was reported to be more common in Florida during the last 3 years (1). The severe outbreak of TMV highlights the importance of preventive measures such as observing sound sanitation practices. References: (1) T. A. Kucharek et al. Plant Dis. 82:1172, 1998; (2) H. R. Pappu et al. Plant Dis. 84:201, 2000.

Evaluation of Tactics for Management of Thrips-Vectored Tomato spotted wilt virus in Tomato

Two studies were conducted in Georgia during the spring of 1997 and 1998 to evaluate various management practices for reducing thrips and thrips-vectored Tomato spotted wilt virus (TSWV) in tomato. Populations of the two species of thrips responsible for transmitting TSWV in tomato fields, Frankliniella occidentalis and F. fusca, were determined using blossom and sticky trap samples. Management practices evaluated were host plant resistance, insecticide treatments, planting date, and light-reflective mulch. In both years, intensive insecticide treatment had the largest effect in reducing thrips and spotted wilt and increasing marketable yield, compared with host plant resistance and reflective mulch. The effect of planting date was consistent in that the later planting date resulted in higher incidence of TSWV, lower thrips numbers, and lower tomato yields, both in fruit quality and dollar value. Host plant resistance and reflective mulch significantly reduced thrips and TSWV. In both years, early planting on black plastic with an intensive insecticide treatment resulted in the highest yield.

Phylogenetic studies of tospoviruses (family: Bunyaviridae) based on intergenic region sequences of small and medium genomic RNAs

Analysis of the intergenic region (IGR) of S and M RNAs of tospoviruses (Family Bunyaviridae) indicated their heterogeneity both in length and sequence. In general, IGRs of M RNA were shorter in length compared to the IGRs of their respective S RNA species. Percent identity among the S RNA IGR sequences of distinct tospovirus species varied from 42 to 57%, whereas it was 79 to 99% among isolates of the same species. Similarly, when IGRs of M RNAs were compared, there was higher sequence identity among isolates of the same tospovirus species (84 to 98%) than among distinct tospovirus species (46 to 59%). Percent nucleotide identities and maximum likelihood trees of IGR sequences of S and M RNAs indicated that their sequence divergence is similar to that of nucleocapsid gene at inter and intra-species levels. This is the first detailed sequence analysis of IGRs of S and M RNAs of known tospoviruses.

Occurrence of Cowpea aphid-borne mosaic virus in Peanut in Brazil

Surveys of peanut crops in northeastern Brazil since 1995 showed the occurrence of a hitherto unreported virus disease. Characteristic leaf symptoms were ring spots and blotches. The virus was seed transmitted in peanut (1/610) and cowpea (47/796). Local and systemic symptoms were observed in cowpea (cv. TVu 3433) known to be susceptible to most Cowpea aphid-borne mosaic virus (CABMV) isolates. The virus was transmitted by aphids Toxoptera citricidus and Aphis gossypii. Using degenerate primers, the 3' terminal region of the viral genome was cloned and sequenced. Sequence analyses of the coat protein and the 3' untranslated region indicated that the potyvirus was most closely related to CABMV isolates from South Africa, Zimbabwe, and the United States. On the basis of genome analysis, the virus was identified as CABMV. The natural occurrence of CABMV on peanut has so far not been reported. The significance of this finding especially for germ plasm exchange is discussed.

Outbreak of Tomato yellow leaf curl virus (Family Geminiviridae) in Georgia

Tomato yellow leaf curl virus (TYLCV) of the family Geminiviridae is a serious production constraint to tomato (3). In the southeastern United States the virus has been largely confined to Florida. The disease appeared in the southern most Georgia county (Decatur) in 1998, at an incidence rate of less than 1% (2). During the fall of 1999, tomato plants showing symptoms indicative of TYLCV were observed in commercial fields in Grady, Colquitt, and Lowndes counties and the experimental plots of the Coastal Plain Experiment Station in two locations in Tift County, GA. The 12-acre commercial field in Grady County had a disease incidence of 15%. In Tift County, in both experimental plots (≈5 miles apart), TYLCV incidence ranged from 15 to 20%. Bemisia argentifolii populations in southern Georgia, based on the observed high incidence of silverleaf symptoms in squash and the intensity of adult migrations during August and September, were the highest in more than 5 years. TYLCV infection was verified by polymerase chain reaction (PCR) amplification with degenerate primers (5'-GCC CAC ATY GTC TTY CCN GT-3' and 5' -GGC TTY CTR TAC ATR GG-3') specific to the DNA A component (4). A simplified and faster DNA extraction procedure was used to obtain PCR-ready templates. Leaf tissue was homogenized in 300 μl of extraction buffer (1), followed by one phenol and one chloroform/ isoamyl alcohol (24:1) extraction. The supernatant was purified using a QiaPrep MiniPrep purification kit (Qiagen, Valencia, CA) and was used in PCR amplification. The procedure yielded highly consistent PCR-quality template. The resulting ≈1.3-kb PCR product was cloned in pGEM-T vector (Promega Corp., Madison, WI) and completely sequenced. Sequence comparisons indicated 98% identity with known TYLCV isolates from Spain (GenBank Accession no. AJ223505), the Dominican Republic (GenBank Accession no. AF024715), and Israel (GenBank Accession no. X15656). Using PCR followed by restriction digestion analysis, three symptomatic plants from one field each in Colquitt and Lowndes counties were TYLCV positive. The higher incidence of TYLCV in the Georgia counties of Tift and Grady and its concurrent occurrence in Colquitt and Lowndes counties indicates its rapid spread in the southeastern United States. References:(1) I. B. Dry et al. J. Gen. Virol. 74:147, 1993. (2) M. T. Momol et al. Plant Dis. 83:487, 1999. (3) J. E. Polston et al. Plant Dis. 83:984, 1999. (4) M. R. Rojas et al. Plant Dis. 77:340, 1993.