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101
Gaeta RT, Danilova TV, Zhao C, Masonbrink RE, McCaw ME, Birchler JA. Recovery of a telomere-truncated chromosome via a compensating translocation in maize. Genome 2011;54:184-95. [PMID: 21423281 DOI: 10.1139/g10-108] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
102
Findley SD, Pappas AL, Cui Y, Birchler JA, Palmer RG, Stacey G. Fluorescence in situ hybridization-based karyotyping of soybean translocation lines. G3 (BETHESDA, MD.) 2011;1:117-29. [PMID: 22384324 PMCID: PMC3276125 DOI: 10.1534/g3.111.000034] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/04/2011] [Accepted: 05/07/2011] [Indexed: 01/06/2023]
103
Koo DH, Han F, Birchler JA, Jiang J. Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome. Genome Res 2011;21:908-14. [PMID: 21518739 DOI: 10.1101/gr.116202.110] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
104
Birchler JA, Gao Z, Sharma A, Presting GG, Han F. Epigenetic aspects of centromere function in plants. CURRENT OPINION IN PLANT BIOLOGY 2011;14:217-22. [PMID: 21411364 DOI: 10.1016/j.pbi.2011.02.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2010] [Revised: 01/19/2011] [Accepted: 02/21/2011] [Indexed: 05/03/2023]
105
Yao H, Kato A, Mooney B, Birchler JA. Phenotypic and gene expression analyses of a ploidy series of maize inbred Oh43. PLANT MOLECULAR BIOLOGY 2011;75:237-251. [PMID: 21188620 DOI: 10.1007/s11103-010-9722-4] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2010] [Accepted: 12/06/2010] [Indexed: 05/30/2023]
106
Kato A, Lamb JC, Albert PS, Danilova T, Han F, Gao Z, Findley S, Birchler JA. Chromosome painting for plant biotechnology. Methods Mol Biol 2011;701:67-96. [PMID: 21181525 DOI: 10.1007/978-1-61737-957-4_4] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
107
Birchler JA, Veitia RA. Protein-Protein and Protein-DNA Dosage Balance and Differential Paralog Transcription Factor Retention in Polyploids. FRONTIERS IN PLANT SCIENCE 2011;2:64. [PMID: 22645545 PMCID: PMC3355771 DOI: 10.3389/fpls.2011.00064] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2011] [Accepted: 09/22/2011] [Indexed: 05/08/2023]
108
Masonbrink RE, Birchler JA. Sporophytic nondisjunction of the maize B chromosome at high copy numbers. J Genet Genomics 2010;37:79-84. [PMID: 20171580 DOI: 10.1016/s1673-8527(09)60027-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2009] [Revised: 10/05/2009] [Accepted: 10/15/2009] [Indexed: 01/12/2023]
109
Birchler JA, Pires JC. Advances in plant cytogenetics. Preface. Cytogenet Genome Res 2010;129:5. [PMID: 20628247 DOI: 10.1159/000308300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
110
Roark LM, Hui AY, Donnelly L, Birchler JA, Newton KJ. Recent and frequent insertions of chloroplast DNA into maize nuclear chromosomes. Cytogenet Genome Res 2010;129:17-23. [PMID: 20628248 DOI: 10.1159/000312724] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
111
Guo M, Birchler JA. Trans-acting dosage effects on the expression of model gene systems in maize aneuploids. Science 2010;266:1999-2002. [PMID: 17836517 DOI: 10.1126/science.266.5193.1999] [Citation(s) in RCA: 117] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
112
Birchler JA, Yao H, Chudalayandi S, Vaiman D, Veitia RA. Heterosis. THE PLANT CELL 2010;22:2105-12. [PMID: 20622146 PMCID: PMC2929104 DOI: 10.1105/tpc.110.076133] [Citation(s) in RCA: 268] [Impact Index Per Article: 19.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
113
Findley SD, Cannon S, Varala K, Du J, Ma J, Hudson ME, Birchler JA, Stacey G. A fluorescence in situ hybridization system for karyotyping soybean. Genetics 2010;185:727-44. [PMID: 20421607 PMCID: PMC2907198 DOI: 10.1534/genetics.109.113753] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2009] [Accepted: 04/04/2010] [Indexed: 11/18/2022]  Open
114
Birchler JA. A study of enzyme activities in a dosage series of the long arm of chromosome one in maize. Genetics 2010;92:1211-29. [PMID: 17248947 PMCID: PMC1214066 DOI: 10.1093/genetics/92.4.1211] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
115
Birchler JA, Newton KJ. Modulation of protein levels in chromosomal dosage series of maize: the biochemical basis of aneuploid syndromes. Genetics 2010;99:247-66. [PMID: 17249116 PMCID: PMC1214499 DOI: 10.1093/genetics/99.2.247] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
116
Albert PS, Gao Z, Danilova TV, Birchler JA. Diversity of chromosomal karyotypes in maize and its relatives. Cytogenet Genome Res 2010;129:6-16. [PMID: 20551613 DOI: 10.1159/000314342] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
117
Birchler JA, Veitia RA. The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution. THE NEW PHYTOLOGIST 2010;186:54-62. [PMID: 19925558 PMCID: PMC2858765 DOI: 10.1111/j.1469-8137.2009.03087.x] [Citation(s) in RCA: 200] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
118
Riddle NC, Jiang H, An L, Doerge RW, Birchler JA. Gene expression analysis at the intersection of ploidy and hybridity in maize. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2010;120:341-53. [PMID: 19657617 DOI: 10.1007/s00122-009-1113-3] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2009] [Accepted: 07/13/2009] [Indexed: 05/24/2023]
119
Birchler JA, Han F. Maize Centromeres: Structure, Function, Epigenetics. Annu Rev Genet 2009;43:287-303. [DOI: 10.1146/annurev-genet-102108-134834] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
120
Kavi HH, Birchler JA. Interaction of RNA polymerase II and the small RNA machinery affects heterochromatic silencing in Drosophila. Epigenetics Chromatin 2009;2:15. [PMID: 19917092 PMCID: PMC2785806 DOI: 10.1186/1756-8935-2-15] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2009] [Accepted: 11/16/2009] [Indexed: 01/17/2023]  Open
121
Kavi HH, Birchler JA. Drosophila KDM2 is a H3K4me3 demethylase regulating nucleolar organization. BMC Res Notes 2009;2:217. [PMID: 19852816 PMCID: PMC2771041 DOI: 10.1186/1756-0500-2-217] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2009] [Accepted: 10/23/2009] [Indexed: 01/19/2023]  Open
122
Veitia RA, Birchler JA. Dominance and gene dosage balance in health and disease: why levels matter! J Pathol 2009;220:174-85. [DOI: 10.1002/path.2623] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
123
Han F, Gao Z, Birchler JA. Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize. THE PLANT CELL 2009;21:1929-39. [PMID: 19602622 PMCID: PMC2729603 DOI: 10.1105/tpc.109.066662] [Citation(s) in RCA: 121] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
124
Sun X, Birchler JA. Interaction study of the male specific lethal (MSL) complex and trans-acting dosage effects in metafemales of Drosophila melanogaster. Cytogenet Genome Res 2009;124:298-311. [PMID: 19556782 DOI: 10.1159/000218134] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2009] [Indexed: 11/19/2022]  Open
125
Sun X, Birchler JA. Studies on the short range spreading of the male specific lethal (MSL) complex on the X chromosome in Drosophila. Cytogenet Genome Res 2009;124:158-69. [PMID: 19420929 DOI: 10.1159/000207524] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/08/2008] [Indexed: 11/19/2022]  Open
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