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101
Zhang ZN, Wu QY, Zhang GZ, Zhu YY, Murphy RW, Liu Z, Zou CG. Systematic analyses reveal uniqueness and origin of the CFEM domain in fungi. Sci Rep 2015;5:13032. [PMID: 26255557 PMCID: PMC4530338 DOI: 10.1038/srep13032] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2015] [Accepted: 07/16/2015] [Indexed: 11/25/2022]  Open
102
Ma W, Zhu ZH, Bi XY, Murphy RW, Wang SY, Gao Y, Xiao H, Zhang YP, Luo J. Allopolyploidization is not so simple: evidence from the origin of the tribe Cyprinini (Teleostei: Cypriniformes). Curr Mol Med 2015;14:1331-8. [PMID: 25470283 DOI: 10.2174/1566524014666141203101543] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Revised: 02/25/2014] [Accepted: 09/23/2014] [Indexed: 11/22/2022]
103
Adeola AC, Ommeh SC, Murphy RW, Wu SF, Peng MS, Zhang YP. Mitochondrial DNA variation of Nigerian domestic helmeted guinea fowl. Anim Genet 2015;46:576-9. [PMID: 26153528 DOI: 10.1111/age.12324] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/18/2015] [Indexed: 11/29/2022]
104
Dang NX, Sun FH, Lv YY, Zhao BH, Wang JC, Murphy RW, Wang WZ, Li JT. DNA barcoding and the identification of tree frogs (Amphibia: Anura: Rhacophoridae). Mitochondrial DNA A DNA Mapp Seq Anal 2015;27:2574-84. [PMID: 26004249 DOI: 10.3109/19401736.2015.1041113] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
105
Song B, Cheng S, Sun Y, Zhong X, Jin J, Guan R, Murphy RW, Che J, Zhang Y, Liu X. A genome draft of the legless anguid lizard, Ophisaurus gracilis. Gigascience 2015;4:17. [PMID: 25859342 PMCID: PMC4391233 DOI: 10.1186/s13742-015-0056-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2014] [Accepted: 03/24/2015] [Indexed: 11/10/2022]  Open
106
Zinenko O, Stümpel N, Mazanaeva L, Bakiev A, Shiryaev K, Pavlov A, Kotenko T, Kukushkin O, Chikin Y, Duisebayeva T, Nilson G, Orlov NL, Tuniyev S, Ananjeva NB, Murphy RW, Joger U. Mitochondrial phylogeny shows multiple independent ecological transitions and northern dispersion despite of Pleistocene glaciations in meadow and steppe vipers (Vipera ursinii and Vipera renardi). Mol Phylogenet Evol 2015;84:85-100. [DOI: 10.1016/j.ympev.2014.12.005] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2013] [Revised: 10/20/2014] [Accepted: 12/09/2014] [Indexed: 10/24/2022]
107
Blair C, Méndez de la Cruz FR, Law C, Murphy RW. Molecular phylogenetics and species delimitation of leaf-toed geckos (Phyllodactylidae: Phyllodactylus) throughout the Mexican tropical dry forest. Mol Phylogenet Evol 2015;84:254-65. [DOI: 10.1016/j.ympev.2015.01.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2014] [Revised: 01/07/2015] [Accepted: 01/09/2015] [Indexed: 10/24/2022]
108
Conflitti IM, Shields GF, Murphy RW, Currie DC. The speciation continuum: ecological and chromosomal divergence in theSimulium arcticumcomplex (Diptera: Simuliidae). Biol J Linn Soc Lond 2015. [DOI: 10.1111/bij.12480] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
109
Peng MS, Fan L, Shi NN, Ning T, Yao YG, Murphy RW, Wang WZ, Zhang YP. DomeTree: a canonical toolkit for mitochondrial DNA analyses in domesticated animals. Mol Ecol Resour 2015;15:1238-42. [PMID: 25655564 DOI: 10.1111/1755-0998.12386] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Revised: 02/01/2015] [Accepted: 02/02/2015] [Indexed: 01/01/2023]
110
Bernardo PH, Aguilera-Miller EF, Álvarez-Castañeda ST, Cruz FRMDL, Murphy RW. The complete mitochondrial genome of the black-tailed brush lizard Urosaurus nigricaudus (Reptilia, Squamata, Phrynosomatidae). Mitochondrial DNA A DNA Mapp Seq Anal 2015;27:4023-4025. [PMID: 25600752 DOI: 10.3109/19401736.2014.1003826] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
111
Álvarez-Castañeda ST, Murphy RW. The endemic insular and peninsular species Chaetodipus spinatus (Mammalia, Heteromyidae) breaks patterns for Baja California. PLoS One 2014;9:e116146. [PMID: 25542029 PMCID: PMC4277467 DOI: 10.1371/journal.pone.0116146] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Accepted: 12/03/2014] [Indexed: 11/23/2022]  Open
112
Blair C, Jiménez Arcos VH, de la Cruz FRM, Murphy RW. Historical and contemporary demography of leaf-toed geckos (Phyllodactylidae: Phyllodactylus tuberculosus saxatilis) in the Mexican dry forest. CONSERV GENET 2014. [DOI: 10.1007/s10592-014-0668-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
113
Xia Y, Zheng Y, Miura I, Wong PBY, Murphy RW, Zeng X. The evolution of mitochondrial genomes in modern frogs (Neobatrachia): nonadaptive evolution of mitochondrial genome reorganization. BMC Genomics 2014;15:691. [PMID: 25138662 PMCID: PMC4153901 DOI: 10.1186/1471-2164-15-691] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2013] [Accepted: 08/12/2014] [Indexed: 11/25/2022]  Open
114
Tu F, Fan Z, Murphy RW, Chen S, Zhang X, Yan C, Liu Y, Sun Z, Fu J, Liu S, Yue B. Molecular phylogenetic relationships among Asiatic shrewlike moles inferred from the complete mitogenomes. J ZOOL SYST EVOL RES 2014. [DOI: 10.1111/jzs.12081] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
115
Zhou WW, Zhang BL, Chen HM, Jin JQ, Yang JX, Wang YY, Jiang K, Murphy RW, Zhang YP, Che J. DNA barcodes and species distribution models evaluate threats of global climate changes to genetic diversity: a case study from Nanorana parkeri (Anura: Dicroglossidae). PLoS One 2014;9:e103899. [PMID: 25093586 PMCID: PMC4122371 DOI: 10.1371/journal.pone.0103899] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2014] [Accepted: 07/07/2014] [Indexed: 11/25/2022]  Open
116
Edwards T, Cox EC, Buzzard V, Wiese C, Hillard LS, Murphy RW. Genetic assessments and parentage analysis of captive Bolson tortoises (Gopherus flavomarginatus) inform their "rewilding" in New Mexico. PLoS One 2014;9:e102787. [PMID: 25029369 PMCID: PMC4100913 DOI: 10.1371/journal.pone.0102787] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Accepted: 06/24/2014] [Indexed: 11/18/2022]  Open
117
Shen YY, Dai K, Cao X, Murphy RW, Shen XJ, Zhang YP. The updated phylogenies of the phasianidae based on combined data of nuclear and mitochondrial DNA. PLoS One 2014;9:e95786. [PMID: 24748132 PMCID: PMC3991718 DOI: 10.1371/journal.pone.0095786] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2013] [Accepted: 03/31/2014] [Indexed: 02/05/2023]  Open
118
Nguyen SN, Yang JX, Le TNT, Nguyen LT, Orlov NL, Hoang CV, Nguyen TQ, Jin JQ, Rao DQ, Hoang TN, Che J, Murphy RW, Zhang YP. DNA barcoding of Vietnamese bent-toed geckos (Squamata: Gekkonidae: Cyrtodactylus) and the description of a new species. Zootaxa 2014;3784:48-66. [PMID: 24872031 DOI: 10.11646/zootaxa.3784.1.2] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2014] [Indexed: 11/04/2022]
119
Liu Z, Wang W, Zhang TZ, Li GH, He K, Huang JF, Jiang XL, Murphy RW, Shi P. Repeated functional convergent effects of NaV1.7 on acid insensitivity in hibernating mammals. Proc Biol Sci 2014;281:20132950. [PMID: 24352952 PMCID: PMC3871328 DOI: 10.1098/rspb.2013.2950] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2013] [Accepted: 11/21/2013] [Indexed: 11/12/2022]  Open
120
Davy CM, Murphy RW. Conservation genetics of the endangered Spotted Turtle (Clemmys guttata) illustrate the risks of “bottleneck tests”. CAN J ZOOL 2014. [DOI: 10.1139/cjz-2013-0188] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
121
Manríquez-Morán NL, Cruz FRMDL, Murphy RW. Genetic Variation and Origin of Parthenogenesis in theAspidoscelis cozumelaComplex: Evidence from Mitochondrial Genes. Zoolog Sci 2014;31:14-9. [DOI: 10.2108/zsj.31.14] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
122
He JD, Gao JM, Shen T, Murphy RW, Yan XM. Evolutionary perspective on hepatitis B virus with an expanded sampling strategy. Virus Res 2013;178:525-9. [PMID: 24103771 DOI: 10.1016/j.virusres.2013.09.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2013] [Revised: 09/19/2013] [Accepted: 09/20/2013] [Indexed: 10/26/2022]
123
Xiao JH, Yue Z, Jia LY, Yang XH, Niu LH, Wang Z, Zhang P, Sun BF, He SM, Li Z, Xiong TL, Xin W, Gu HF, Wang B, Werren JH, Murphy RW, Wheeler D, Niu LM, Ma GC, Tang T, Bian SN, Wang NX, Yang CY, Wang N, Fu YG, Li WZ, Yi SV, Yang XY, Zhou Q, Lu CX, Xu CY, He LJ, Yu LL, Chen M, Zheng Y, Wang SW, Zhao S, Li YH, Yu YY, Qian XJ, Cai Y, Bian LL, Zhang S, Wang JY, Yin Y, Xiao H, Wang GH, Yu H, Wu WS, Cook JM, Wang J, Huang DW. Obligate mutualism within a host drives the extreme specialization of a fig wasp genome. Genome Biol 2013;14:R141. [PMID: 24359812 PMCID: PMC4053974 DOI: 10.1186/gb-2013-14-12-r141] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2013] [Accepted: 12/20/2013] [Indexed: 12/23/2022]  Open
124
Nguyen SN, Le TNT, Tran TAD, Orlov NL, Lathrop A, Macculloch RD, Le TDT, Jin JQ, Nguyen LT, Nguyen TT, Hoang DD, Che J, Murphy RW, Zhang YP. Phylogeny of the Cyrtodactylus irregularis species complex (Squamata: Gekkonidae) from Vietnam with the description of two new species. Zootaxa 2013;3737:399-414. [PMID: 25112761 DOI: 10.11646/zootaxa.3737.4.4] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2013] [Indexed: 11/04/2022]
125
Xu P, Lu B, Xiao H, Fu X, Murphy RW, Wu K. The evolution and expression of the moth visual opsin family. PLoS One 2013;8:e78140. [PMID: 24205129 PMCID: PMC3813493 DOI: 10.1371/journal.pone.0078140] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Accepted: 09/17/2013] [Indexed: 12/24/2022]  Open
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