101
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Milekic MH, Xin Y, O'Donnell A, Kumar KK, Bradley-Moore M, Malaspina D, Moore H, Brunner D, Ge Y, Edwards J, Paul S, Haghighi FG, Gingrich JA. Age-related sperm DNA methylation changes are transmitted to offspring and associated with abnormal behavior and dysregulated gene expression. Mol Psychiatry 2015; 20:995-1001. [PMID: 25092244 DOI: 10.1038/mp.2014.84] [Citation(s) in RCA: 122] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/16/2014] [Revised: 05/14/2014] [Accepted: 06/17/2014] [Indexed: 12/15/2022]
Abstract
Advanced paternal age (APA) has been shown to be a significant risk factor in the offspring for neurodevelopmental psychiatric disorders, such as schizophrenia and autism spectrum disorders. During aging, de novo mutations accumulate in the male germline and are frequently transmitted to the offspring with deleterious effects. In addition, DNA methylation during spermatogenesis is an active process, which is susceptible to errors that can be propagated to subsequent generations. Here we test the hypothesis that the integrity of germline DNA methylation is compromised during the aging process. A genome-wide DNA methylation screen comparing sperm from young and old mice revealed a significant loss of methylation in the older mice in regions associated with transcriptional regulation. The offspring of older fathers had reduced exploratory and startle behaviors and exhibited similar brain DNA methylation abnormalities as observed in the paternal sperm. Offspring from old fathers also had transcriptional dysregulation of developmental genes implicated in autism and schizophrenia. Our findings demonstrate that DNA methylation abnormalities arising in the sperm of old fathers are a plausible mechanism to explain some of the risks that APA poses to resulting offspring.
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102
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Yuan L, Ge Y, Sheng Y, Hedrick K, Yin F, Wu QJ. TH-EF-BRD-07: Knowledge Based Automatic Lung IMRT Planning with Non-Coplanar Beams. Med Phys 2015. [DOI: 10.1118/1.4926294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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103
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Yuan L, Wu QJ, Sheng Y, Liu J, Benitez A, Yin F, Ge Y. SU-E-T-537: Local Multi-Criteria Optimization for Clinical Tradeoff Decision Guidance in RT Planning. Med Phys 2015. [DOI: 10.1118/1.4924899] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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104
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Oborn B, Ge Y, Hardcastle N, Metcalfe P, Keall P. WE-G-BRD-05: Inline Magnetic Fields Enhance Tumor Dose for Small Lung Cancers. Med Phys 2015. [DOI: 10.1118/1.4926061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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105
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Yuan L, Ge Y, Sheng Y, Yin F, Wu QJ. MO-G-304-03: Development of Knowledge Models for IMRT Treatment Planning Utilizing a Rapid Learning Approach. Med Phys 2015. [DOI: 10.1118/1.4925474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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106
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Garrett J, Ge Y, Li K, Chen G. TU-CD-207-12: Impact of Anatomical Noise On Detection Performance of Microcalcifications in Multi-Contrast Breast Imaging. Med Phys 2015. [DOI: 10.1118/1.4925631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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107
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Ge Y, Booth J, Colvill E, O'Brien R, Keall P. SU-E-J-57: First Development of Adapting to Intrafraction Relative Motion Between Prostate and Pelvic Lymph Nodes Targets. Med Phys 2015. [DOI: 10.1118/1.4924144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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108
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Ge Y, Li X, Yang XX, Cui CS, Qu SP. Short Communication: Genetic linkage map of Cucurbita maxima with molecular and morphological markers. GENETICS AND MOLECULAR RESEARCH 2015; 14:5480-4. [PMID: 26125744 DOI: 10.4238/2015.may.22.18] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Cucurbita maxima is one of the most widely cultivated vegetables in China and exhibits distinct morphological characteristics. In this study, genetic linkage analysis with 57 simple-sequence repeats, 21 amplified fragment length polymorphisms, 3 random-amplified polymorphic DNA, and one morphological marker revealed 20 genetic linkage groups of C. maxima covering a genetic distance of 991.5 cM with an average of 12.1 cM between adjacent markers. Genetic linkage analysis identified the simple-sequence repeat marker 'PU078072' 5.9 cM away from the locus 'Rc', which controls rind color. The genetic map in the present study will be useful for better mapping, tagging, and cloning of quantitative trait loci/gene(s) affecting economically important traits and for breeding new varieties of C. maxima through marker-assisted selection.
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109
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Ge Y, Ma L, Tao L, Han M, Ma L. Predicting Early Lung Cancer Using Big Data. Ann Oncol 2015. [DOI: 10.1093/annonc/mdv044.04] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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110
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Zhang K, Wang S, Zhou X, Xu HHK, Weir MD, Ge Y, Li M, Wang S, Li Y, Xu X, Zheng L, Cheng L. Effect of antibacterial dental adhesive on multispecies biofilms formation. J Dent Res 2015; 94:622-9. [PMID: 25715378 DOI: 10.1177/0022034515571416] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Antibacterial adhesives have favorable prospects to inhibit biofilms and secondary caries. The objectives of this study were to investigate the antibacterial effect of dental adhesives containing dimethylaminododecyl methacrylate (DMADDM) on different bacteria in controlled multispecies biofilms and its regulating effect on development of biofilm for the first time. Antibacterial material was synthesized, and Streptococcus mutans, Streptococcus gordonii, and Streptococcus sanguinis were chosen to form multispecies biofilms. Lactic acid assay and pH measurement were conducted to study the acid production of controlled multispecies biofilms. Anthrone method and exopolysaccharide (EPS):bacteria volume ratio measured by confocal laser scanning microscopy were performed to determine the EPS production of biofilms. The colony-forming unit counts, scanning electron microscope imaging, and dead:live volume ratio decided by confocal laser scanning microscopy were used to study the biomass change of controlled multispecies biofilms. The TaqMan real-time polymerase chain reaction and fluorescent in situ hybridization imaging were used to study the proportion change in multispecies biofilms of different groups. The results showed that DMADDM-containing adhesive groups slowed the pH drop and decreased the lactic acid production noticeably, especially lactic acid production in the 5% DMADDM group, which decreased 10- to 30-fold compared with control group (P < 0.05). EPS was reduced significantly in 5% DMADDM group (P < 0.05). The DMADDM groups reduced the colony-forming unit counts significantly (P < 0.05) and had higher dead:live volume ratio in biofilms compared with control group (P < 0.05). The proportion of S. mutans decreased steadily in DMADDM-containing groups and continually increased in control group, and the biofilm had a more healthy development tendency after the regulation of DMADDM. In conclusion, the adhesives containing DMADDM had remarkable antimicrobial properties to serve as "bioactive" adhesive materials and revealed its potential value for antibiofilm and anticaries clinical applications.
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111
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Ge Y, Chang Y, Xu W, Cui C, Qu S. Sequence variations in the FAD2 gene in seeded pumpkins. GENETICS AND MOLECULAR RESEARCH 2015; 14:17482-8. [DOI: 10.4238/2015.december.21.19] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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112
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Nilsén F, Aaltio I, Ge Y, Lindroos T, Hannula S. Characterization of Gas Atomized Ni-Mn-Ga Powders. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.matpr.2015.07.422] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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113
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Chan MK, Veit MJ, Dorow CJ, Ge Y, Li Y, Tabis W, Tang Y, Zhao X, Barišić N, Greven M. In-plane magnetoresistance obeys Kohler's rule in the pseudogap phase of cuprate superconductors. PHYSICAL REVIEW LETTERS 2014; 113:177005. [PMID: 25379934 DOI: 10.1103/physrevlett.113.177005] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Indexed: 06/04/2023]
Abstract
We report in-plane resistivity (ρ) and transverse magnetoresistance (MR) measurements for underdoped HgBa(2)CuO(4+δ) (Hg1201). Contrary to the long-standing view that Kohler's rule is strongly violated in underdoped cuprates, we find that it is in fact satisfied in the pseudogap phase of Hg1201. The transverse MR shows a quadratic field dependence, δρ/ρ(0)=aH(2), with a(T)∝T(-4). In combination with the observed ρ∝T(2) dependence, this is consistent with a single Fermi-liquid quasiparticle scattering rate. We show that this behavior is typically masked in cuprates with lower structural symmetry or strong disorder effects.
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114
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Lu YJ, Wang M, Ge Y, Fu CX, Chang J. Response of photosynthetic and growth characteristic of Mosla chinensis and congenerous weed M. scabra to soil water content. RUSS J ECOL+ 2014. [DOI: 10.1134/s106741361405018x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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115
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Robert C, Joshua A, Weber J, Ribas A, Hodi F, Kefford R, Daud A, Wolchok J, Hwu WJ, Gangadhar T, Patnaik A, Hersey P, Dronca R, Zarour H, Ge Y, Lindia J, Giannotti M, Ebbinghaus S, Kang S, Hamid O. Pembrolizumab (Pembro; Mk-3475) for Advanced Melanoma (Mel): Randomized Comparison of Two Dosing Schedules. Ann Oncol 2014. [DOI: 10.1093/annonc/mdu438.42] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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116
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Zhang X, Ma W, Cui J, Yao H, Zhou H, Ge Y, Xiao L, Hu X, Liu BH, Yang J, Li YY, Chen S, Eaves CJ, Wu D, Zhao Y. Regulation of p21 by TWIST2 contributes to its tumor-suppressor function in human acute myeloid leukemia. Oncogene 2014; 34:3000-10. [DOI: 10.1038/onc.2014.241] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Revised: 06/08/2014] [Accepted: 06/15/2014] [Indexed: 12/18/2022]
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117
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Ge Y, He J, Bzdusek K, Keall P. SU-E-J-255: Clinical Benefit of Accounting for Intrafraction Lung Tumor System Deformation: First Treatment Planning Study. Med Phys 2014. [DOI: 10.1118/1.4888309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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118
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Sheng Y, Li T, Yin F, Ge Y, Wu Q. SU-E-J-177: Understanding the Seminal Vesicle's Motion Relative to the Prostate: Range and Pattern. Med Phys 2014. [DOI: 10.1118/1.4888230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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119
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Ge Y, OBrien R, Shieh C, Booth J, Keall P. WE-G-BRF-01: Adaptation to Intrafraction Tumor Deformation During Intensity-Modulated Radiotherapy: First Proof-Of-Principle Demonstration. Med Phys 2014. [DOI: 10.1118/1.4889494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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120
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Hu L, Yuan L, Ge Y, Yin F, Wu Q. SU-E-T-229: Machine Learning Methods for Knowledge Based Treatment Planning of Prostate Cancer. Med Phys 2014. [DOI: 10.1118/1.4888559] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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121
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Lyons Y, Kamat A, Schwartz M, Mody D, Zhou H, Hobday C, Ge Y. Contribution of human papillomavirus (HPV) genotypes to persistently abnormal cervical cytology in a high-risk Latino population. Gynecol Oncol 2014. [DOI: 10.1016/j.ygyno.2014.03.442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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122
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Liu J, Wu Q, Yin F, Kirkpatrick J, Cabrera A, Ge Y. TH-A-9A-01: Active Optical Flow Model: Predicting Voxel-Level Dose Prediction in Spine SBRT. Med Phys 2014. [DOI: 10.1118/1.4889571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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123
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Yuan L, Ge Y, Yin F, Li Y, Sheng Y, Wu QJ. SU-E-T-49: Automatic Beam Angle Determination for Lung IMRT Planning Using a Beam Configuration Atlas. Med Phys 2014. [DOI: 10.1118/1.4888379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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124
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Simonaro C, Frohbergh M, Ge Y, Meng F, He X, DeAngelis V, Karabul N, Sόlyom A, Schuchman E. THU0361 Bone and Joint Disease in Mucopolysaccharidosis Involves Tlr4-Related Inflammation and Improves upon Treatment with Pentosan Polysulphate. Ann Rheum Dis 2014. [DOI: 10.1136/annrheumdis-2014-eular.3340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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125
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Sheng Y, Li T, Zhang Y, Yin F, Ge Y, Wu Q. MO-C-17A-07: Building Atlas for Automatic Prostate IMRT Planning: Anatomical Feature Parameterization and Classification. Med Phys 2014. [DOI: 10.1118/1.4889130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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