The Bioconjugation of Redox Proteins to Novel Electrode Materials

The immobilization of redox proteins on electrode surfaces has been crucial for understanding the fundamentals of electron transfer in biological systems and has led to the development of biosensors and other bioelectronic devices. Novel materials, such as carbon nanotubes, gold and other metallic nanoparticles, carbon nanofibre and mesoporous materials have been widely used in the construction of these bioelectrodes, and have been shown to greatly improve the efficiency of electron transfer between the electrode and the redox centre of the protein. The use of these materials has spawned a diversity of covalent and non-covalent techniques for protein immobilization that offer different advantages and disadvantages to the performance of the bioelectrode. This review covers the important properties of these novel electrode materials relevant to the bioconjugation of proteins, and discusses the various methods of attachment from recent examples in the literature.

Gram-scale production of graphene based on solvothermal synthesis and sonication

Carbon nanostructures have emerged as likely candidates for a wide range of applications, driving research into novel synthetic techniques to produce nanotubes, graphene and other carbon-based materials. Single sheets of pristine graphene have been isolated from bulk graphite in small amounts by micromechanical cleavage, and larger amounts of chemically modified graphene sheets have been produced by a number of approaches. Both of these techniques make use of highly oriented pyrolitic graphite as a starting material and involve labour-intensive preparations. Here, we report the direct chemical synthesis of carbon nanosheets in gram-scale quantities in a bottom-up approach based on the common laboratory reagents ethanol and sodium, which are reacted to give an intermediate solid that is then pyrolized, yielding a fused array of graphene sheets that are dispersed by mild sonication. The ability to produce bulk graphene samples from non-graphitic precursors with a scalable, low-cost approach should take us a step closer to real-world applications of graphene.

The Effect of Unsaturation on the Formation of Self-Assembled Gels from Fatty Acid L-Serine Amides and their Cytotoxicity Towards Caco-2 Cancer Cells

A series of saturated and unsaturated fatty acid l-serines 3 were synthesized and their ability to form self-assembled gels was investigated. The saturated (lauroyl 3a and steraoyl 3b) and monounsaturated (oleoyl 3c) fatty acid l-serines form gels in both water and organic solvent, whereas the diunsaturated linoleyl-l-serine 3d does not form gels in these solvents, indicating that unsaturation adversely affects the gelation process. Cytotoxicity studies on these compounds with Caco-2 cancer cells in vitro show that these gels are only moderately cytotoxic at concentrations up to 0.5 mM, making them a promising candidate for applications such as drug delivery.

Effect of axial ligands and macrocyclic structure on redox potentials and electron-transfer mechanisms of SnIV porphyrins

The electrochemical properties of dichloro- and dihydroxo-SnIV porphyrins with three different macrocycles were examined in CH2Cl2 containing 0.1 or 0.2 M tetra-n-butylammonium perchlorate as supporting electrolyte. The investigated compounds are represented as (TPP)SnX2, (P)Sn(X)2, and (PQ)Sn(X)2, where TPP = 5,10,15,20-tetraphenylporphyrin, P = 5,10,15,20-tetrakis(3,5-di-tert-butylphenyl)porphyrin, PQ = 5,10,15,20-tetrakis(3,5-di-tert-butylphenyl)quinoxalino[2,3-b']porphyrin, and X = Cl or OH. Each porphyrin can be electroreduced in two one-electron-transfer steps with the half-wave potentials and stability of the eletroreduced compounds being dependent upon the type of coordinated axial ligand and specific macrocyclic structure. All reductions of (TPP)Sn(OH)2, (P)Sn(OH)2, and (PQ)Sn(OH)2 are reversible under the given experimental conditions and lead to the expected porphyrin pi-anion radicals and dianions, which were characterized by thin-layer UV-vis spectroelectrochemistry. This contrasts with what occurs upon the reduction of (PQ)SnCl2, which undergoes a chemical reaction with trace H2O in solution, leading to the formation of (PQ)Sn(OH)2 as well as to a protonated form of the quinoxalinoporphyrin, (PQH)Sn(OH)2, under the application of an applied potential. A protonation of the Q group breaks the conjugation between the fused quinoxaline unit and the porphyrin macrocycle, thus effectively giving a compound whose reduction properties resemble that of the metalloporphyrin in the absence of the fused ring. The electrooxidation of each neutral SnIV porphyrin was also investigated, and the effect of axial ligand and fused quinoxaline ring on the redox potentials and products of electron transfer are discussed.

Pyromellitamide Aggregates and Their Response to Anion Stimuli

The N,N',N'',N'''-1,2,4,5-tetra(ethylhexanoate) pyromellitamide is found to be capable of both intermolecular aggregation and binding to small anions. It is synthesized by aminolysis of pyromellitic anhydride with ethanolamine, followed by a reaction with hexanoyl chloride. The single-crystal X-ray structure of the pyromellitamide shows that it forms one-dimensional columnar stacks through an intermolecular hydrogen-bonding network. It also forms self-assembled gels in nonpolar solvents, presumably by a hydrogen-bonding network similar to the solid-state structure as shown by IR and XRD studies. Aggregation by intermolecular hydrogen bonding of the pyromellitamide is also observed by NMR and IR in solution. Fitting of NMR dilution data for pyromellitamide in d6-acetone to a cooperative aggregation model gave KE=232 M-1 and positive cooperativity of aggregation (rho=0.22). The pyromellitamide binds to a range of small anions with the binding strength decreasing in the order chloride>acetate>bromide>nitrate approximately iodide. The data indicate that the pyromellitamide binds two anions and that it displays negative cooperativity. The intermolecular aggregation of the pyromellitamide can also be altered using small anion stimuli; anion addition to preformed self-assembled pyromellitamide gels causes their collapse. The kinetics of anion-induced gel collapse are qualitatively correlated to the binding affinities of the same anions in solution. The cooperative anion binding properties and the sensitivity of the self-assembled gels formed by pyromellitamide toward anions could be useful in the development of sensors and switching/releasing devices.

Real-time single-molecule imaging of oxidation catalysis at a liquid-solid interface

Many chemical reactions are catalysed by metal complexes, and insight into their mechanisms is essential for the design of future catalysts. A variety of conventional spectroscopic techniques are available for the study of reaction mechanisms at the ensemble level, and, only recently, fluorescence microscopy techniques have been applied to monitor single chemical reactions carried out on crystal faces and by enzymes. With scanning tunnelling microscopy (STM) it has become possible to obtain, during chemical reactions, spatial information at the atomic level. The majority of these STM studies have been carried out under ultrahigh vacuum, far removed from conditions encountered in laboratory processes. Here we report the single-molecule imaging of oxidation catalysis by monitoring, with STM, individual manganese porphyrin catalysts, in real time, at a liquid-solid interface. It is found that the oxygen atoms from an O2 molecule are bound to adjacent porphyrin catalysts on the surface before their incorporation into an alkene substrate.

Photoinduced reduction of catalytically and biologically active Ru(ii)bisterpyridine–cytochrome c bioconjugates

Ruthenium(II)bisterpyridine chromophores were covalently linked to iso-1 cytochrome c from yeast to create light-activated donor-acceptor bioconjugates.

Well-defined protein–polymer conjugates—synthesis and potential applications

During the last decades, numerous studies have focused on combining the unique catalytic/functional properties and structural characteristics of proteins and enzymes with those of synthetic molecules and macromolecules. The aim of such multidisciplinary studies is to improve the properties of the natural component, combine them with those of the synthetic, and create novel biomaterials in the nanometer scale. The specific coupling of polymers onto the protein structures has proved to be one of the most straightforward and applicable approaches in that sense. In this article, we focus on the synthetic pathways that have or can be utilized to specifically couple proteins to polymers. The different categories of well-defined protein-polymer conjugates and the effect of the polymer on the protein function are discussed. Studies have shown that the specific conjugation of a synthetic polymer to a protein conveys its physico-chemical properties and, therefore, modifies the biodistribution and solubility of the protein, making it in certain cases soluble and active in organic solvents. An overview of the applications derived from such bioconjugates in the pharmaceutical industry, biocatalysis, and supramolecular nanobiotechnology is presented at the final part of the article.

Developments in Using Scanning Probe Microscopy To Study Molecules on Surfaces — From Thin Films and Single-Molecule Conductivity to Drug–Living Cell Interactions

Scanning probe microscopy (SPM) techniques, including atomic force microscopy (AFM) and scanning tunnelling microscopy (STM), have revolutionized our understanding of molecule–surface interactions. The high resolution and versatility of SPM techniques have helped elucidate the morphology of adsorbed surfactant layers, facilitated the study of electronically conductive single molecules and biomolecules connected to metal substrates, and allowed direct observation of real-time processes such as in situ DNA hybridization and drug–cell interactions. These examples illustrate the power that SPM possesses to study (bio)molecules on surfaces and will be discussed in depth in this review.

New discrete metallocycles incorporating palladium(ii) and platinum(ii) corners and dipyridyldibenzotetraaza[14]annulene side units

The interaction of the extended, fully-conjugated macrocycle, dipyridyldibenzotetraaza[14]annulene (1), with the square planar palladium(II) and platinum(II) complexes [M(dppp)(triflate)(2)].2H(2)O (M = Pd, Pt) has been investigated in both solution and the solid state. In each case solid products showing a 1:1 ratio of metal complex: 1 were obtained. A 1:1 mixture of and [Pd(dppp)(2)(triflate)(2)].2H(2)O in dichloromethane yielded two major products as evidenced by the presence of two singlets in the (31)P {(1)H}-NMR spectrum of the reaction solution. Similarly, two singlets were evident in the corresponding spectrum obtained on dissolving the 1:1 product in nitrobenzene. The temperature and concentration dependence of the spectra clearly showed that the two species present in each case were in equilibrium. From the temperature dependence, the low field signal was assigned to the smaller of the two species. Broadly parallel behaviour was observed for the corresponding platinum-containing system. The MS-ESI spectrum of the platinum derivative showed the presence of a dinuclear species corresponding to [Pt(dppp)(1)](2)(2+) and an X-ray structure of this product confirmed that a corresponding dinuclear complex exists in the solid state. This product has a geometry in which two curved macrocyclic side units bridge two metal centres to yield an ellipse-shaped structure. Attempts to employ pulsed-field gradient spin-echo (PGSE) (31)P NMR confirmed that the lower-field resonance corresponded to the smaller of the two species in solution. STM (HOPG) imaging of the palladium- and platinum-containing products revealed arrays that appear to be composed of "zipper-like" rows of dimer units, with the dimensions of the latter comparing well with those found in the X-ray structure of [Pt(dppp)(1)](2)(2+).

Chiral molecular tapes from novel tetra(thiafulvalene-crown-ether)-substituted phthalocyanine building blocks

A tetra(thiafulvalene-crown-ether) phthalocyanine self-assembles into helical tapes nanometers wide and micrometers long. Formation of these scrolled molecular architectures is a first for phthalocyanine fibres and shows potential as a novel conducting material.

Mimicking the Motion of Life: Catalytically Active Rotaxanes as Processive Enzyme Mimics

An often overlooked but essential architectural motif found in all living organisms is that of the toroid. Through evolution, nature has used the threading of biopolymers through toroidal assemblies, forming pseudo-rotaxanes, to impart a processive character on the synthesis, replication, repair, and even recombination of DNA. In spite of the fact that numerous processive enzymes have been reported and that life would not exist without such natural rotaxanes, there are virtually no examples of synthetic processive catalysts let alone biomimetic models of these essential and potentially useful systems. To rectify this omission we describe below our recent construction and study of the first catalytic rotaxane molecular machine, which can run along a polymer thread and carry out processive oxidative reactions.

Donor−Acceptor Phthalocyanine Nanoaggregates

A novel donor-acceptor bisphthalocyanine (bis-Pc, 1) in which two different Pc units (Zn(II)-Pc and Ni(II)-Pc) are linked via vinylene spacers to the pseudopara positions of a central [2.2]paracyclophane moiety is described. The synthesis of 1 is achieved by two successive Heck reactions of pseudopara-divinyl[2.2]paracyclophane 9 with, sequentially, a zinc(II)- and a nickel(II)-iodophthalocyanine (4 and 5, respectively). The self-assembly ability of 1, which is the result of the complementary donor-acceptor character of its phthalocyanine units, has been assessed by a variety of techniques. It is revealed that 1 forms one-dimensional aggregates of nanometer-sized dimension, whereas equimolar mixtures of the donor and acceptor Pc subunits 2 and 3, although strongly interacting, do not give large arrays. The aggregates of 1 represent a novel type of supramolecular polymers based mainly upon donor-acceptor interactions.

Epoxidation of polybutadiene by a topologically linked catalyst

Nature has evolved complex enzyme architectures that facilitate the synthesis and manipulation of the biopolymers DNA and RNA, including enzymes capable of attaching to the biopolymer substrate and performing several rounds of catalysis before dissociating. Many of these 'processive' enzymes have a toroidal shape and completely enclose the biopolymer while moving along its chain, as exemplified by the DNA enzymes T4 DNA polymerase holoenzyme and lambda-exonucleoase. The overall architecture of these systems resembles that of rotaxanes, in which a long molecule or polymer is threaded through a macrocycle. Here we describe a rotaxane that mimics the ability of processive enzymes to catalyse multiple rounds of reaction while the polymer substrate stays bound. The catalyst consists of a substrate binding cavity incorporating a manganese(III) porphyrin complex that oxidizes alkenes within the toroid cavity, provided a ligand has been attached to the outer face of the toroid to both activate the porphyrin complex and shield it from being able to oxidize alkenes outside the cavity. We find that when threaded onto a polybutadiene polymer strand, this catalyst epoxidizes the double bonds of the polymer, thereby acting as a simple analogue of the enzyme systems.

The synthesis and studies towards the self-replication of bis(capped porphyrins)

Connecting two facially-protected porphyrins was expected to lead to an equal mixture of laterally-bridged doubly-protected bis-porphyrins; one in which the two porphyrin units were protected on the same face (syn) and one with the two prophyrin units protected on opposite faces (anti). Addition of a co-factor (bidentate ligand) was expected to lead predominantly to the syn-bis-porphyrin by a templated self-replication process. This concept was explored using Baldwin's capped porphyrin. Bis(capped porphyrins) were synthesised in several steps starting from zinc(II) capped porphyrin 2. Nitration of 2 followed by reduction and photo-oxidation yields a mixture of zinc(II) porphyrindiones 7 and 8 that can separated by HPLC. The condensation of 2 molar eq. of zinc(II) porphyrin-7,8-dione 8 with 1,2,4,5-benzenetetramine leads to the formation of a 1:1 mixture of syn- and anti-dizinc(II) bis(7,8-capped porphyrins), 11 and 12, respectively, that have almost identical spectroscopic properties. These two geometric isomers were distinguished by significant differences in their molecular recognition properties. Likewise the syn- and anti-dizinc(II) bis(2,3-capped porphyrins), 9 and 10, respectively, are synthesised from the related zinc(II) capped porphyrin-2,3-dione 7, and were also identified using molecular recognition studies. The molecular recognition properties of these bis(capped porphyrins) were utilised in studies of self-replicating porphyrin systems. The results show that tetraazaanthraceno-bis-porphyrins 9-12 can catalyse their own formation but self-replication was not observed. These results highlight the potential that these interesting hosts have as templates in supramolecular chemistry, synthesis and catalysis.

Highly negative homotropic allosteric binding of viologens in a double-cavity porphyrin

The synthesis of a double-cavity porphyrin with interesting allosteric binding properties toward viologens (N,N'-disubstituted 4,4'-bipyridines) is described. The porphyrin host forms very strong 1:2 complexes with viologens, displaying a negative allosteric behavior. The first viologen guest binds exceptionally tight (K > 107 M-1), and the second guest binds much more weakly (DeltaDeltaG = 9-15 kJ mol-1). The allosteric effect, one of the highest reported so far, originates in structural changes upon binding the first ligand, closely following the sequential (or induced-fit) theory of allosteric interactions by Koshland, Némethy, and Filmer (the KNF-model).