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Titt U, Mirkovic D, Liu A, Anand A, Perles L, Ciangaru G, Mohan R. SU-E-T-584: Commissioning of the MC2 Monte Carlo Dose Computation Engine. Med Phys 2014. [DOI: 10.1118/1.4888920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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127
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Cao W, Zaghian M, Liu W, Kardar L, Randeniya S, Lim G, Mohan R. TH-C-BRD-10: An Evaluation of Three Robust Optimization Approaches in IMPT Treatment Planning. Med Phys 2014. [DOI: 10.1118/1.4889608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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128
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Guan F, Bronk L, Kerr M, Titt U, Taleei R, Mirkovic D, Zhu X, Grosshans D, Mohan R. TH-A-19A-07: The Effect of Particle Tracking Step Size Limit On Monte Carlo- Computed LET Spectrum of Therapeutic Proton Beams. Med Phys 2014. [DOI: 10.1118/1.4889540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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129
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Rothenberg L, Mohan R, Van Dyk J, Fraass B, Bortfeld T. WE-G-16A-01: Evolution of Radiation Treatment Planning. Med Phys 2014. [DOI: 10.1118/1.4889474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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130
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Mohan R, Pelc N, Jaffray D, Mackie T. TU-C-BRF-01: Innovation in Medical Physics and Engineering. Med Phys 2014. [DOI: 10.1118/1.4889275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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131
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Harrington D, Liu W, Park P, Mohan R. SU-E-T-551: PTV Is the Worst-Case of CTV in Photon Therapy. Med Phys 2014. [DOI: 10.1118/1.4888886] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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132
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Babu KSS, Dhavamurthy M, NizamMohideen M, Peramaiyan G, Mohan R. 2-Amino-6-methyl-pyridinium 4-methyl-benzene-sulfonate. Acta Crystallogr Sect E Struct Rep Online 2014; 70:o600-1. [PMID: 24860395 PMCID: PMC4011207 DOI: 10.1107/s1600536814008587] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2014] [Accepted: 04/15/2014] [Indexed: 11/10/2022]
Abstract
In the asymmetric unit of the title salt, C6H9N2+·C7H7O3S−, there are two independent 2-amino-6-methylpyridinium cations and two independent 4-methylbenzenesulfonate anions. Both cations are protonated at their pyridine N atoms and their geometries reveal amine–imine tautomerism. In the 4-methylbenzenesulfonate anions, the carboxylate groups are twisted out of the benzene ring planes by 88.4 (1) and 86.2 (2)°. In the crystal, the sulfonate O atoms of an anion interact with the protonated N atoms and the 2-amino groups of a cation via a pair of N—H⋯O hydrogen bonds, forming an R22(8) ring motif. These motifs are connected via N—H⋯O hydrogen bonds, forming chains running along the a-axis direction. Within the chains there are weak C—H⋯O hydrogen bonds present. In addition, aromatic π–π stacking interactions [centroid–centroid distances = 3.771 (2), 3.599 (2), 3.599 (2) and 3.497 (2) Å] involving neighbouring chains are also observed.
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Babu KSS, Peramaiyan G, NizamMohideen M, Mohan R. 2-Amino-6-methyl-pyridinium 2,2,2-tri-chloro-acetate. Acta Crystallogr Sect E Struct Rep Online 2014; 70:o391-2. [PMID: 24826114 PMCID: PMC3998557 DOI: 10.1107/s1600536814004553] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2014] [Accepted: 02/27/2014] [Indexed: 11/10/2022]
Abstract
In the asymmetric unit of the title molecular salt, C6H9N2+·C2Cl3O2−, there are two independent 2-amino-6-methylpyridinium cations and two independent trichloroacetate anions. The pyridine N atom of the 2-amino-6-methylpyridine molecule is protonated and the geometries of these cations reveal amine–imine tautomerism. Both protonated 2-amino-6-methylpyridinium cations are essentially planar [maximum deviations = 0.026 (2) and 0.012 (2) Å]. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxylate O atoms of the anion via a pair of N—H⋯O hydrogen bonds, forming an R22(8) ring motif. These motifs are connected via N—H⋯O and C—H⋯O hydrogen bonds to form slabs parallel to (101).
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134
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Mohan R. 139: Robust Optimization of IMPT Dose Distributions. Radiother Oncol 2014. [DOI: 10.1016/s0167-8140(15)34160-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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135
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Perles LA, Mirkovic D, Anand A, Titt U, Mohan R. LET dependence of the response of EBT2 films in proton dosimetry modeled as a bimolecular chemical reaction. Phys Med Biol 2013; 58:8477-91. [DOI: 10.1088/0031-9155/58/23/8477] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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136
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Arularasan P, Chakkaravarthi G, Mohan R. catena-Poly[[bis-(nitrato-κ(2) O,O')barium]-bis-(μ-l-histidine-κ(3) O,O':O]. Acta Crystallogr Sect E Struct Rep Online 2013; 69:m597. [PMID: 24454031 PMCID: PMC3884255 DOI: 10.1107/s1600536813027402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2013] [Accepted: 10/06/2013] [Indexed: 11/18/2022]
Abstract
In the polymeric title compound, [Ba(NO3)2(C6H9N3O2)2]n, the BaII atom is located on a crystallographic twofold axis and is coordinated by ten O atoms. Six are derived from two zwitterionic l-histidine molecules that simultaneously chelate one BaII atom and bridge to another. The remaining four O atoms are derived from two chelating nitrates. The molecules assemble to form a chain along [010]. In the crystal, chains are linked via N—H⋯O and N—H⋯N hydrogen bonds, generating a three-dimensional network.
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Arularasan P, B Sivakumar, Chakkaravarthi G, Mohan R. Bis(μ-l-arginine-κ(3) N (2),O:O')bis-(l-arginine-κ(2) N (2),O)tetra-μ-chlorido-tetra-chlorido-tetra-copper(II). Acta Crystallogr Sect E Struct Rep Online 2013; 69:m583-4. [PMID: 24454023 PMCID: PMC3884247 DOI: 10.1107/s1600536813026780] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2013] [Accepted: 09/29/2013] [Indexed: 11/24/2022]
Abstract
The title compound, [Cu4Cl8(C6H14N4O2)4], contains four molecules in the asymmetric unit. In the molecular structure, each of the four Cu2+ ions binds to three Cl atoms, one N atom and one O atom, resulting in distorted square-pyramidal coordination environments. The molecular structure is stabilized by weak C—H⋯O and N—H⋯Cl hydrogen bonds. The crystal structure exhibit weak intermolecular N—H⋯O, C—H⋯O and N—H⋯Cl interactions, generating a three-dimensional network.
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Xu T, Gomez D, O'Reilly M, Guerrero T, Nguyen Q, Levy L, Huo J, Komaki R, Mohan R, Liao Z. Serum TGF-β1 and VEGF Are Associated With Tumor Burden and Tumor Response on PET to (Chemo)radiation Therapy in Patients With Non-Small Cell Lung Cancer. Int J Radiat Oncol Biol Phys 2013. [DOI: 10.1016/j.ijrobp.2013.06.240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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139
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Zhang L, Court L, Liao Z, Li H, Mohan R, Balter P. Large Tumor Shrinkage Is Preceded by the Appearance of a Cavity Inside the Tumor for NSCLC Patients Treated With Chemoradiation Therapy. Int J Radiat Oncol Biol Phys 2013. [DOI: 10.1016/j.ijrobp.2013.06.248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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140
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Zhu XR, Poenisch F, Lii M, Sawakuchi GO, Titt U, Bues M, Song X, Zhang X, Li Y, Ciangaru G, Li H, Taylor MB, Suzuki K, Mohan R, Gillin MT, Sahoo N. Commissioning dose computation models for spot scanning proton beams in water for a commercially available treatment planning system. Med Phys 2013; 40:041723. [PMID: 23556893 DOI: 10.1118/1.4798229] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
PURPOSE To present our method and experience in commissioning dose models in water for spot scanning proton therapy in a commercial treatment planning system (TPS). METHODS The input data required by the TPS included in-air transverse profiles and integral depth doses (IDDs). All input data were obtained from Monte Carlo (MC) simulations that had been validated by measurements. MC-generated IDDs were converted to units of Gy mm(2)/MU using the measured IDDs at a depth of 2 cm employing the largest commercially available parallel-plate ionization chamber. The sensitive area of the chamber was insufficient to fully encompass the entire lateral dose deposited at depth by a pencil beam (spot). To correct for the detector size, correction factors as a function of proton energy were defined and determined using MC. The fluence of individual spots was initially modeled as a single Gaussian (SG) function and later as a double Gaussian (DG) function. The DG fluence model was introduced to account for the spot fluence due to contributions of large angle scattering from the devices within the scanning nozzle, especially from the spot profile monitor. To validate the DG fluence model, we compared calculations and measurements, including doses at the center of spread out Bragg peaks (SOBPs) as a function of nominal field size, range, and SOBP width, lateral dose profiles, and depth doses for different widths of SOBP. Dose models were validated extensively with patient treatment field-specific measurements. RESULTS We demonstrated that the DG fluence model is necessary for predicting the field size dependence of dose distributions. With this model, the calculated doses at the center of SOBPs as a function of nominal field size, range, and SOBP width, lateral dose profiles and depth doses for rectangular target volumes agreed well with respective measured values. With the DG fluence model for our scanning proton beam line, we successfully treated more than 500 patients from March 2010 through June 2012 with acceptable agreement between TPS calculated and measured dose distributions. However, the current dose model still has limitations in predicting field size dependence of doses at some intermediate depths of proton beams with high energies. CONCLUSIONS We have commissioned a DG fluence model for clinical use. It is demonstrated that the DG fluence model is significantly more accurate than the SG fluence model. However, some deficiencies in modeling the low-dose envelope in the current dose algorithm still exist. Further improvements to the current dose algorithm are needed. The method presented here should be useful for commissioning pencil beam dose algorithms in new versions of TPS in the future.
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Guan F, Titt U, Bangert M, Mohan R. SU-E-T-502: In Search of the Optimum Ion for Radiotherapy. Med Phys 2013. [DOI: 10.1118/1.4814931] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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142
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Liu W, Mohan R, Zhu X, Grosshans D. TH-C-144-04: Robust Optimization in Intensity-Modulated Proton Therapy for Base-Of-Skull Cancers. Med Phys 2013. [DOI: 10.1118/1.4815798] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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143
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Titt U, Guan F, Mirkovic D, Mohan R. SU-E-T-535: On the Out-Of-Field-Doses Caused by Secondary Particles From Light Ion Beams in Charged Particle Therapy. Med Phys 2013. [DOI: 10.1118/1.4814965] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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144
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Archambault L, Poenisch F, Sahoo N, Robertson D, Lee A, Gillin MT, Mohan R, Beddar S. Verification of proton range, position, and intensity in IMPT with a 3D liquid scintillator detector system. Med Phys 2013; 39:1239-46. [PMID: 22380355 DOI: 10.1118/1.3681948] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Intensity-modulated proton therapy (IMPT) using spot scanned proton beams relies on the delivery of a large number of beamlets to shape the dose distribution in a highly conformal manner. The authors have developed a 3D system based on liquid scintillator to measure the spatial location, intensity, and depth of penetration (energy) of the proton beamlets in near real-time. METHODS The detector system consists of a 20 × 20 × 20 cc liquid scintillator (LS) material in a light tight enclosure connected to a CCD camera. This camera has a field of view of 25.7 by 19.3 cm and a pixel size of 0.4 mm. While the LS is irradiated, the camera continuously acquires images of the light distribution produced inside the LS. Irradiations were made with proton pencil beams produced with a spot-scanning nozzle. Pencil beams with nominal ranges in water between 9.5 and 17.6 cm were scanned to irradiate an area of 10 × 10 cm square on the surface of the LS phantom. Image frames were acquired at 50 ms per frame. RESULTS The signal to noise ratio of a typical Bragg peak was about 170. Proton range measured from the light distribution produced in the LS was accurate to within 0.3 mm on average. The largest deviation seen between the nominal and measured range was 0.6 mm. Lateral position of the measured pencil beam was accurate to within 0.4 mm on average. The largest deviation seen between the nominal and measured lateral position was 0.8 mm; however, the accuracy of this measurement could be improved by correcting light scattering artifacts. Intensity of single proton spots were measured with precision ranging from 3 % for the smallest spot intensity (0.005 MU) to 0.5 % for the largest spot (0.04 MU). CONCLUSIONS Our LS detector system has been shown to be capable of fast, submillimeter spatial localization of proton spots delivered in a 3D volume. This system could be used for beam range, intensity and position verification in IMPT.
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Matney J, Chen Y, Park P, Li H, Bluett J, Sahoo N, Court L, Liao Z, Mohan R. TH-A-116-03: Photon and Proton Radiotherapy of the Lung Would Benefit From 4D Dose Calculation Techniques. Med Phys 2013. [DOI: 10.1118/1.4815732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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146
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Titt U, Mirkovic D, Mohan R. SU-C-500-04: Three-Dimensional Energy Fluence Estimates for Future Treatment Planning Systems. Med Phys 2013. [DOI: 10.1118/1.4813949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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147
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Mirkovic D, Titt U, Peeler C, Perles L, Liao Z, Mohan R. TU-G-108-08: Variable RBE and Incidence of Radiation Pneumonitis in Lung Patients Treated with Proton Therapy. Med Phys 2013. [DOI: 10.1118/1.4815457] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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148
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Guan F, Mohan R, Dinh J, Kerr M, Perles L, Mirkovic D, Titt U, Zhu X, Gillin M, Meyn R, Lin S, Grosshans D. TH-F-105-03: Experimental Design and Preliminary Results for High-Resolution and High-Throughput In-Vitro Measurements of Proton RBE. Med Phys 2013. [DOI: 10.1118/1.4815816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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149
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Peeler C, Mirkovic D, Perles L, Titt U, Grosshans D, Mohan R. TH-F-105-05: Comparison of Results for RBE-Weighted Dose From Two RBE Models for Proton Therapy Treatment Plans. Med Phys 2013. [DOI: 10.1118/1.4815818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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150
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Williamson R, Court L, Zhang L, Liao Z, Mohan R, Chen Y, Balter P. SU-E-J-197: Tracking Tumor Response Over Treatment Course in IMRT and Proton Patients. Med Phys 2013. [DOI: 10.1118/1.4814409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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