Traveling wave fronts and localized traveling wave convection in binary fluid mixtures

Nonlinear fronts between spatially extended traveling wave (TW) convection and quiescent fluid and spatially localized traveling waves (LTWs) are investigated in quantitative detail in the bistable regime of binary fluid mixtures heated from below. A finite-difference method is used to solve the full hydrodynamic field equations in a vertical cross section of the layer perpendicular to the convection roll axes. Results are presented for ethanol-water parameters with several strongly negative separation ratios where TW solutions bifurcate subcritically. Fronts and LTWs are compared with each other and similarities and differences are elucidated. Phase propagation out of the quiescent fluid into the convective structure entails a unique selection of the latter while fronts and interfaces where the phase moves into the quiescent state behave differently. Interpretations of various experimental observations are suggested.

Efficient synthetic inhibitors of anthrax lethal factor

Inhalation anthrax is a deadly disease for which there is currently no effective treatment. Bacillus anthracis lethal factor (LF) metalloproteinase is an integral component of the tripartite anthrax lethal toxin that is essential for the onset and progression of anthrax. We report here on a fragment-based approach that allowed us to develop inhibitors of LF. The small-molecule inhibitors we have designed, synthesized, and tested are highly potent and selective against LF in both in vitro tests and cell-based assays. These inhibitors do not affect the prototype human metalloproteinases that are structurally similar to LF. Initial in vivo evaluation of postexposure efficacy of our inhibitors combined with antibiotic ciprofloxacin against B. anthracis resulted in significant protection. Our data strongly indicate that the scaffold of inhibitors we have identified is the foundation for the development of novel, safe, and effective emergency therapy of postexposure inhalation anthrax.

Virtual docking approaches to protein kinase B inhibition

We examined some in silico approaches to identify Akt (protein kinase B) inhibitors. Experimental validation of selected compounds was achieved using a fluorescence-based enzymatic assay and a substrate phosphorylation assay involving the protein GSK-3. We report on success and failure obtained by using several strategies including FlexX, GOLD, and CSCORE, where the 100-200 top-scoring compounds from a 50000-compound library were experimentally tested. This study led to the identification of low micromolar Akt1 inhibitors.

[Phytobezoars: case report and review of the literature]

We report on the case of a 40-year-old woman with a long year history of vegetarian lifestyle, who experienced a phytobezoar induced acute abdomen due to a mechanic small bowel ileus. After uncomplicated surgical treatment and post-OP course the patient could be discharged on post-OP day 10. Beside a description of the historical background, relevant diagnostic and therapeutic aspects are mentioned as well as a review of the relevant literature.

Discovery of a Novel Class of Reversible Non-Peptide Caspase Inhibitors via a Structure-Based Approach

In this paper, we report a simple structure-based iterative optimizations (SUBITO) strategy to identify and optimize new protein ligands and inhibitors. The approach is based on a combination of NMR-based screening and computational docking methods and enabled the identification of novel chemical leads among hundreds of thousands of commercially available compounds by screening only a few hundred compounds from a scaffold library followed by iterative screening steps where only few dozen compounds are tested. As an application, we report on the discovery of a novel class of non-peptide reversible caspase inhibitors, with IC(50) values in the low micromolar range.

Oscillatory convection in binary mixtures: thermodiffusion, solutal buoyancy, and advection

The role of thermodiffusive generation of concentration fluctuations via the Soret effect, their contribution to the buoyancy forces that drive convection, the advective mixing effect of the latter, and the diffusive homogenisation are compared and elucidated for oscillatory convection. Numerically obtained solutions of the field equations in the form of spatially extended relaxed traveling waves, of standing waves, and of the transient growth of standing waves and their transition to traveling waves are discussed as well as spatially localized convective states of traveling waves that are surrounded by the quiescent fluid.

Molecular modeling of sigma 1 receptor ligands: a model of binding conformational and electrostatic considerations

We have performed molecular modeling studies on several sigma 1 specific ligands, including PD144418, spipethiane, haloperidol, pentazocine, and others to develop a pharmacophore for sigma 1 receptor-ligand binding, under the assumption that all the compounds interact at the same receptor binding site. The modeling studies have investigated the conformational and electrostatic properties of the ligands. Superposition of active molecules gave the coordinates of the hypothetical 5-point sigma 1 pharmacophore, as follows: R1 (0.85, 7.26, 0.30); R2 (5.47, 2.40, -1.51); R3 (-2.57, 4.82, -7.10); N (-0.71, 3.29, -6.40); carbon centroid (3.16, 4.83, -0.60), where R1, R2 were constructed onto the aromatic ring of each compound to represent hydrophobic interactions with the receptor; and R3 represents a hydrogen bond between the nitrogen atom and the receptor. Additional analyses were used to describe secondary binding sites to electronegative groups such as oxygen or sulfur atom. Those coordinates are (2.34, 5.08, -4.18). The model was verified by fitting other sigma 1 receptor ligands. This model may be used to search conformational databases for other possibly active ligands. In conjunction with rational drug design techniques the model may be useful in design and synthesis of novel sigma 1 ligands of high selectivity and potency. Calculations were performed using Sybyl 6.5.

Standing-wave oscillations in binary mixture convection: from the onset via symmetry breaking to period doubling into chaos

Oscillatory solution branches of the hydrodynamic field equations describing convection in the form of a standing wave (SW) in binary fluid mixtures heated from below are determined completely for several negative Soret coefficients psi. Galerkin as well as finite-difference simulations were used. They were augmented by simple control methods to obtain also unstable SW states. For sufficiently negative psi, unstable SWs bifurcate subcritically out of the quiescent conductive state. They become stable via a saddle-node bifurcation when lateral phase pinning is exerted. Eventually their invariance under timeshift by half a period combined with reflection at midheight of the fluid layer gets broken. Thereafter, they terminate by undergoing a period-doubling cascade into chaos.

Human ileal bile acid transporter gene ASBT (SLC10A2) is transactivated by the glucocorticoid receptor

BACKGROUND

Patients with Crohn's disease suffer from intestinal bile acid malabsorption. Intestinal bile acid absorption is mediated by the apical sodium dependent bile acid transporter ASBT/IBAT (SLC10A2). In rats, ASBT is induced by glucocorticoids.

AIMS

To study whether human ASBT is activated by glucocorticoids and to elucidate the mechanism of regulation.

PATIENTS AND METHODS

ASBT expression in ileal biopsies from patients with Crohn's disease and from healthy subjects was quantified by western blot. ASBT promoter function was studied in luciferase assays and by electrophoretic mobility shift assay.

RESULTS

In 16 patients with Crohn's disease, ASBT expression was reduced to 69 (7.5)% compared with healthy controls (mean (SEM); p = 0.01). In 10 healthy male volunteers, ASBT protein expression was increased 1.34 (0.11)-fold (mean (SEM); p<0.05) after 21 days' intake of budesonide (9 mg/day) whereas expression of the peptide transporter 1 was unaffected. Reporter constructs of the human ASBT promoter were activated 15-20-fold by coexpression of the glucocorticoid receptor (GR) and exposure to the GR ligands dexamethasone or budesonide. Two glucocorticoid response elements in the ASBT promoter, arranged as inverted hexanucleotide repeats (IR3 elements), conferred inducibility by GR and dexamethasone in a heterologous promoter context and were shown to bind GR in mobility shift assays.

CONCLUSIONS

Human ASBT is induced by glucocorticoids in vitro and in vivo. Induction of ASBT by glucocorticoids could be beneficial in patients with Crohn's disease who exhibit reduced ASBT expression. This study identifies ASBT as a novel target of glucocorticoid controlled gene regulation in the human intestine.

A comparative molecular field analysis (CoMFA) study using semiempirical, density functional,ab initio methods and pharmacophore derivation using DISCOtech on sigma 1 ligands

The Comparative Molecular Field Analysis (CoMFA) was developed to investigate a three-dimensional quantitative structure activity relationship (3D-QSAR) model of ligands for the sigma 1 receptor. The starting geometry of sigma-1 receptor ligands was obtained from the Tripos force field minimizations and conformations were decided from DISCOtech using the SYBYL 6.8. program. The structures of 48 molecules were fully optimized at the ab initio HF/3-21G* and semiempirical AM1 calculations using GAUSSIAN 98. The electrostatic charges were calculated using several methods such as semiempirical AM1, density functional B3LYP/3-21G*, and ab initio HF/3-21G*, MP2/3-21G* calculations within GAUSSIAN 98. Using the optimized geometries, the CoMFA results derived from the HF/3-21G method were better than those from AM1. The best CoMFA was obtained from HF/3-21G* optimized geometry and charges (R2 = 0.977). Using the optimized geometries, the CoMFA results derived from the HF/3-21G methods were better than those from AM1 calculations. The training set of 43 molecules gave higher R2 (0.989-0.977) from HF/3-21G* optimized geometries than R2 (0.966-0.911) values from AM1 optimized geometries. The test set of five molecules also suggested that HF/3-21G* optimized geometries produced good CoMFA models to predict bioactivity of sigma 1 receptor ligands but AM1 optimized geometries failed to predict reasonable bioactivity of sigma 1 receptor ligands using different calculations for atomic charges.

Interpretation of the magnetic structures of Cu2Te2O5X2 (X = Cl, Br) and Ca3.1Cu0.9RuO6 on the basis of electronic structure considerations: cases for strong super-superexchange interactions involving Cu2+ ions

For super-superexchange interactions between Cu(2+) ions, a qualitative rule was formulated to assess their strengths based on the geometrical parameters of the exchange paths. Spin dimer analysis was carried out for Cu(2)Te(2)O(5)X(2) (X = Cl, Br) and Ca(3.1)Cu(0.9)RuO(6) to evaluate the relative strengths of their superexchange and super-superexchange interactions. The strongest antiferromagnetic interactions in Cu(2)Te(2)O(5)X(2) (X = Cl, Br) are given by the super-superexchange interactions involving the most linear Cu-X.X-Cu paths between tetrahedral clusters Cu(4)O(8)X(4) along the (a +/- b)-directions. The adjacent CuRuO(6) chains of Ca(3.1)Cu(0.9)RuO(6) are antiferromagnetically coupled through the most linear Cu-O.O-Cu paths along the direction perpendicular to the plane of the CuRu zigzag chain. The spin lattices of Cu(2)Te(2)O(5)X(2) and Ca(3.1)Cu(0.9)RuO(6) deduced from our spin dimer analysis are consistent with the available magnetic data. The spin lattice of a magnetic solid should be determined on the basis of appropriate electronic structure considerations.

Cranial nerve function in workers exposed to polychlorinated dioxins and furans

OBJECTIVE

To look for possible effects of polychlorinated dioxins and furans (PCDD/F) on cranial nerve function.

MATERIAL AND METHODS

Clinical and neurophysiological examinations [visual and brainstem auditory evoked potentials (VEP and BAEP), blink reflex] in 121 PCDD/F exposed workers of one pesticide producing plant.

RESULTS

BAEP abnormalities were more frequent in workers with chloracne (6 of 33 workers, 18.2%) than in those without chloracne (7 of 84, 8.3%), but this was not statistically significant (chi2: 2.33). VEP abnormalities were seen in one worker with and two without chloracne. Clinically visual functions were normal except in one worker, who was amaurotic since birth. Blink reflex abnormalities without corresponding clinical findings were observed in two patients without chloracne.

CONCLUSION

Severe exposure to PCDD/F is not followed by clinical signs of cranial nerve dysfunction but may create an increased risk for abnormal BAEP findings, which were more than twice as common in workers with chloracne. Although this difference did not reach statistical significance, it cannot exclude a toxic effect of PCDD/F, as statistical significance is difficult to achieve with such small numbers of workers. In none of the workers, BAEP abnormalities were accompanied by clinical signs of hearing dysfunction.

Localized waves without the existence of extended waves: oscillatory convection of binary mixtures with strong soret effect

Spatially confined solutions of traveling convection rolls are determined numerically for binary mixtures such as ethanol-water. The appropriate field equations are solved in a vertical cross section of the rolls perpendicular to their axes subject to realistic horizontal boundary conditions. The localized convective states are stably and robustly sustained by strongly nonlinear mixing and complex flow-induced concentration redistribution. We elucidate how this enables their existence for strongly negative separation ratios at small subcritical heating rates below the saddle node of extended traveling convection rolls where the quiescent fluid is strongly stable.

Effects of an external exposure to 200 ppm methyl ethyl ketone on nasal mucosa in healthy volunteers

OBJECTIVES

To investigate the effects of an acute exposure to 200 ppm methyl ethyl ketone on the nasal mucosa of healthy volunteers.

METHODS

Nineteen healthy non-smoking men were exposed to 200 ppm methyl ethyl ketone and to a sham exposure in an exposure chamber, using a cross-over design. Mucociliary transport time was determined with the saccharine test. Interleukin (IL)-1beta, IL-6, IL-8, and tumor necrosis factor-alpha (TNFalpha) were measured in nasal secretions. Subjective symptoms were assessed by questionnaire.

RESULTS

Mucociliary transport time was significantly higher (660 vs. 600 s (medians), P = 0.01) after solvent exposure. Concentrations of IL-1beta and IL-8 were insignificantly elevated after exposure (IL-1beta: 83.8 pg/ml vs. 48.1 pg/ml, medians, P = 0.11; IL-8: 14471 pg/ml vs. 11080 pg/ml, P = 0.12), whereas those of IL-6 and TNFalpha remained unchanged. Subjects did not feel any irritation of nasal mucosa.

CONCLUSION

Concentrations of organic solvents not exceeding their MAK values can cause subclinical rhinitis. The secretion of proinflammatory cytokines and impairment of mucociliary transport can explain the development of clinical rhinitis in highly exposed subjects.