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Isolation and Characterization of Oil-Degrading Enterobacter sp. from Naturally Hydrocarbon-Contaminated Soils and Their Potential Use against the Bioremediation of Crude Oil. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11083504] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The contamination of crude oil in soil matrices is a persistent problem with negative repercussions because of the recalcitrant, hazardous, and mutagenic properties of its constituents. To mitigate the effect of crude oil contamination in soil, the use of microorganisms is a cheap and feasible option. In the current study, bacterial species from numerous polluted oil field surfaces were isolated and examined for their ability to degrade crude oil. Random soil samples polluted with hydrocarbons were collected and various bacterial isolates were isolated. Results revealed that 40% of total isolates had potential use for hydrocarbon biodegradation, the synthesis of exopolysaccharides and the solubilization of phosphorous. Following isolation and characterization to degrade crude oil, a pot trial was conducted using maize inoculated with the four best strains—i.e., S1 (PMEL-63), S2 (PMEL-67), S3 (PMEL-80), and S4 (PMEL-79)—in artificially hydrocarbon-polluted soil with concentrations of crude oil of 0, 1000, and 2000 ppm. Results revealed that S4 (PMEL-79) had significant potential to degrade hydrocarbon in polluted soils. The root length, shoot length, and fresh biomass of maize were increased by 65%, 45%, and 98%, respectively, in pots inoculated with S4 (PMEL-79) Enterobacter cloacae subsp., whereas the lowest root length was observed where no strain was added and the concentration of crude oil was at maximum. Moreover, S4 (PMEL-79) Enterobacter cloacae subsp. was found to be the most effective strain in degrading crude oil and increasing maize growth under polluted soil conditions. It was concluded that the isolation of microorganisms from oil-contaminated sites should be considered in order to identify the most effective microbial consortium for the biodegradation of naturally hydrocarbon-contaminated soils.
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Li X, Mao X, Xu Y, Li Y, Zhao N, Yao J, Dong Y, Tigabu M, Zhao X, Li S. Comparative transcriptomic analysis reveals the coordinated mechanisms of Populus × canadensis 'Neva' leaves in response to cadmium stress. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 216:112179. [PMID: 33798869 DOI: 10.1016/j.ecoenv.2021.112179] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 02/04/2021] [Accepted: 03/20/2021] [Indexed: 05/15/2023]
Abstract
Cadmium (Cd), a heavy metal element has strong toxicity to living organisms. Excessive Cd accumulation directly affects the absorption of mineral elements, inhibits plant tissue development, and even induces mortality. Populus × canadensis 'Neva', the main afforestation variety planted widely in northern China, was a candidate variety for phytoremediation. However, the genes relieving Cd toxicity and increasing Cd tolerance of this species were still unclear. In this study, we employed transcriptome sequencing on two Cd-treated cuttings to identify the key genes involved in Cd stress responses of P. × canadensis 'Neva' induced by 0 (CK), 10 (C10), and 20 (C20) mg/L Cd(NO3)2 4H2O. We discovered a total of 2,656 (1,488 up-regulated and 1,168 down-regulated) and 2,816 DEGs (1,470 up-regulated and 1,346 down-regulated) differentially expressed genes (DEGs) between the CK vs C10 and CK vs C20, respectively. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses in response to the Cd stress indicated that many DEGs identified were involved in the catalytic activity, the oxidoreductase activity, the transferase activity, and the biosynthesis of secondary metabolites. Based on the enrichment results, potential candidate genes were identified related to the calcium ion signal transduction, transcription factors, the antioxidant defense system, and transporters and showed divergent expression patterns under the Cd stress. We also validated the reliability of transcriptome data with the real-time PCR. Our findings deeper the understanding of the molecular responsive mechanisms of P. × canadensis 'Neva' on Cd tolerance and further provide critical resources for phytoremediation applications.
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Affiliation(s)
- Xiang Li
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Xiuhong Mao
- Key Laboratory for Genetics and Breeding in Forest Trees of Shandong Province, Shandong Academy of Forestry, Jinan 250014, Shandong, China
| | - Yujin Xu
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Yan Li
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Nan Zhao
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Junxiu Yao
- Key Laboratory for Genetics and Breeding in Forest Trees of Shandong Province, Shandong Academy of Forestry, Jinan 250014, Shandong, China
| | - Yufeng Dong
- Key Laboratory for Genetics and Breeding in Forest Trees of Shandong Province, Shandong Academy of Forestry, Jinan 250014, Shandong, China
| | - Mulualem Tigabu
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, SE-230 53 Alnarp, Sweden.
| | - Xiyang Zhao
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Shanwen Li
- Key Laboratory for Genetics and Breeding in Forest Trees of Shandong Province, Shandong Academy of Forestry, Jinan 250014, Shandong, China.
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