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Bai R, Benjamini D, Cheng J, Basser PJ. Fast, accurate 2D-MR relaxation exchange spectroscopy (REXSY): Beyond compressed sensing. J Chem Phys 2016; 145:154202. [PMID: 27782473 PMCID: PMC5074998 DOI: 10.1063/1.4964144] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2016] [Accepted: 09/19/2016] [Indexed: 11/14/2022] Open
Abstract
Previously, we showed that compressive or compressed sensing (CS) can be used to reduce significantly the data required to obtain 2D-NMR relaxation and diffusion spectra when they are sparse or well localized. In some cases, an order of magnitude fewer uniformly sampled data were required to reconstruct 2D-MR spectra of comparable quality. Nonetheless, this acceleration may still not be sufficient to make 2D-MR spectroscopy practicable for many important applications, such as studying time-varying exchange processes in swelling gels or drying paints, in living tissue in response to various biological or biochemical challenges, and particularly for in vivo MRI applications. A recently introduced framework, marginal distributions constrained optimization (MADCO), tremendously accelerates such 2D acquisitions by using a priori obtained 1D marginal distribution as powerful constraints when 2D spectra are reconstructed. Here we exploit one important intrinsic property of the 2D-MR relaxation exchange spectra: the fact that the 1D marginal distributions of each 2D-MR relaxation exchange spectrum in both dimensions are equal and can be rapidly estimated from a single Carr-Purcell-Meiboom-Gill (CPMG) or inversion recovery prepared CPMG measurement. We extend the MADCO framework by further proposing to use the 1D marginal distributions to inform the subsequent 2D data-sampling scheme, concentrating measurements where spectral peaks are present and reducing them where they are not. In this way we achieve compression or acceleration that is an order of magnitude greater than that in our previous CS method while providing data in reconstructed 2D-MR spectral maps of comparable quality, demonstrated using several simulated and real 2D T2 - T2 experimental data. This method, which can be called "informed compressed sensing," is extendable to other 2D- and even ND-MR exchange spectroscopy.
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Affiliation(s)
- Ruiliang Bai
- Section on Quantitative Imaging and Tissue Sciences, DIBGI, NICHD, National Institutes of Health, Bethesda, Maryland 20892, USA
| | - Dan Benjamini
- Section on Quantitative Imaging and Tissue Sciences, DIBGI, NICHD, National Institutes of Health, Bethesda, Maryland 20892, USA
| | - Jian Cheng
- Section on Quantitative Imaging and Tissue Sciences, DIBGI, NICHD, National Institutes of Health, Bethesda, Maryland 20892, USA
| | - Peter J Basser
- Section on Quantitative Imaging and Tissue Sciences, DIBGI, NICHD, National Institutes of Health, Bethesda, Maryland 20892, USA
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Li X, Cai Y, Moloney B, Chen Y, Huang W, Woods M, Coakley FV, Rooney WD, Garzotto MG, Springer CS. Relative sensitivities of DCE-MRI pharmacokinetic parameters to arterial input function (AIF) scaling. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2016; 269:104-112. [PMID: 27288764 PMCID: PMC4958517 DOI: 10.1016/j.jmr.2016.05.018] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Revised: 05/26/2016] [Accepted: 05/27/2016] [Indexed: 05/25/2023]
Abstract
Dynamic-Contrast-Enhanced Magnetic Resonance Imaging (DCE-MRI) has been used widely for clinical applications. Pharmacokinetic modeling of DCE-MRI data that extracts quantitative contrast reagent/tissue-specific model parameters is the most investigated method. One of the primary challenges in pharmacokinetic analysis of DCE-MRI data is accurate and reliable measurement of the arterial input function (AIF), which is the driving force behind all pharmacokinetics. Because of effects such as inflow and partial volume averaging, AIF measured from individual arteries sometimes require amplitude scaling for better representation of the blood contrast reagent (CR) concentration time-courses. Empirical approaches like blinded AIF estimation or reference tissue AIF derivation can be useful and practical, especially when there is no clearly visible blood vessel within the imaging field-of-view (FOV). Similarly, these approaches generally also require magnitude scaling of the derived AIF time-courses. Since the AIF varies among individuals even with the same CR injection protocol and the perfect scaling factor for reconstructing the ground truth AIF often remains unknown, variations in estimated pharmacokinetic parameters due to varying AIF scaling factors are of special interest. In this work, using simulated and real prostate cancer DCE-MRI data, we examined parameter variations associated with AIF scaling. Our results show that, for both the fast-exchange-limit (FXL) Tofts model and the water exchange sensitized fast-exchange-regime (FXR) model, the commonly fitted CR transfer constant (K(trans)) and the extravascular, extracellular volume fraction (ve) scale nearly proportionally with the AIF, whereas the FXR-specific unidirectional cellular water efflux rate constant, kio, and the CR intravasation rate constant, kep, are both AIF scaling insensitive. This indicates that, for DCE-MRI of prostate cancer and possibly other cancers, kio and kep may be more suitable imaging biomarkers for cross-platform, multicenter applications. Data from our limited study cohort show that kio correlates with Gleason scores, suggesting that it may be a useful biomarker for prostate cancer disease progression monitoring.
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Affiliation(s)
- Xin Li
- Advanced Imaging Research Center, Oregon Health & Science University, Portland, OR 97239, United States.
| | - Yu Cai
- Advanced Imaging Research Center, Oregon Health & Science University, Portland, OR 97239, United States
| | - Brendan Moloney
- Advanced Imaging Research Center, Oregon Health & Science University, Portland, OR 97239, United States
| | - Yiyi Chen
- Division of Biostatistics, Dept. of Public Health and Preventive Medicine, Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97239, United States
| | - Wei Huang
- Advanced Imaging Research Center, Oregon Health & Science University, Portland, OR 97239, United States
| | - Mark Woods
- Advanced Imaging Research Center, Oregon Health & Science University, Portland, OR 97239, United States; Department of Chemistry, Portland State University, Portland, OR 97207, United States
| | - Fergus V Coakley
- Department of Diagnostic Radiology, Oregon Health & Science University, Portland, OR 97239, United States
| | - William D Rooney
- Advanced Imaging Research Center, Oregon Health & Science University, Portland, OR 97239, United States
| | - Mark G Garzotto
- Department of Urology, Oregon Health & Science University, Portland, OR 97239, United States; Portland VA Medical Center, Portland, OR 97239, United States
| | - Charles S Springer
- Advanced Imaging Research Center, Oregon Health & Science University, Portland, OR 97239, United States
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Wilson GJ, Springer CS, Bastawrous S, Maki JH. Human whole blood 1 H 2 O transverse relaxation with gadolinium-based contrast reagents: Magnetic susceptibility and transmembrane water exchange. Magn Reson Med 2016; 77:2015-2027. [PMID: 27297589 DOI: 10.1002/mrm.26284] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2016] [Revised: 03/31/2016] [Accepted: 04/29/2016] [Indexed: 02/02/2023]
Abstract
PURPOSE To characterize transverse relaxation in oxygenated whole blood with extracellular gadolinium-based contrast reagents by experiment and simulation. METHODS Experimental measurements of transverse 1 H2 O relaxation from oxygenated whole human blood and plasma were made at 1.5 and 3.0 Tesla. Spin-echo refocused and free-induction decays are reported for blood and plasma samples containing four different contrast reagents (gadobenate, gadoteridol, gadofosveset, and gadobutrol), each present at concentrations ranging from 1 to 18 mM (i.e., mmol (contrast reagent (CR))/L (blood)). Monte Carlo simulations were conducted to ascertain the molecular mechanisms underlying relaxation. These consisted of random walks of water molecules in a large ensemble of randomly oriented erythrocytes. Bulk magnetic susceptibility (BMS) differences between the extra- and intracellular compartments were taken into account. All key parameters for these simulations were taken from independent published measurements: they include no adjustable variables. RESULTS Transverse relaxation is much more rapid in whole blood than in plasma, and the large majority of this dephasing is reversible by spin echo. Agreement between the experimental data and simulated results is remarkably good. CONCLUSION Extracellular field inhomogeneities alone make very small contributions, whereas the orientation-dependent BMS intracellular resonance frequencies lead to the majority of transverse dephasing. Equilibrium exchange of water molecules between the intra- and extracellular compartments plays a significant role in transverse dephasing. Magn Reson Med 77:2015-2027, 2017. © 2016 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
| | - Charles S Springer
- Advanced Imaging Research Center, Oregon Health and Science University, Portland, Oregon, USA
| | - Sarah Bastawrous
- Radiology, University of Washington, Seattle, Washington, USA.,Radiology, Puget Sound VA Healthcare System, Seattle, Washington, USA
| | - Jeffrey H Maki
- Radiology, University of Washington, Seattle, Washington, USA
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Budinger TF, Bird MD, Frydman L, Long JR, Mareci TH, Rooney WD, Rosen B, Schenck JF, Schepkin VD, Sherry AD, Sodickson DK, Springer CS, Thulborn KR, Uğurbil K, Wald LL. Toward 20 T magnetic resonance for human brain studies: opportunities for discovery and neuroscience rationale. MAGMA (NEW YORK, N.Y.) 2016; 29:617-39. [PMID: 27194154 PMCID: PMC5538368 DOI: 10.1007/s10334-016-0561-4] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2016] [Revised: 04/06/2016] [Accepted: 04/11/2016] [Indexed: 12/16/2022]
Abstract
An initiative to design and build magnetic resonance imaging (MRI) and spectroscopy (MRS) instruments at 14 T and beyond to 20 T has been underway since 2012. This initiative has been supported by 22 interested participants from the USA and Europe, of which 15 are authors of this review. Advances in high temperature superconductor materials, advances in cryocooling engineering, prospects for non-persistent mode stable magnets, and experiences gained from large-bore, high-field magnet engineering for the nuclear fusion endeavors support the feasibility of a human brain MRI and MRS system with 1 ppm homogeneity over at least a 16-cm diameter volume and a bore size of 68 cm. Twelve neuroscience opportunities are presented as well as an analysis of the biophysical and physiological effects to be investigated before exposing human subjects to the high fields of 14 T and beyond.
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Affiliation(s)
- Thomas F Budinger
- Lawrence Berkeley National Laboratory, University of California, Berkeley, CA, USA.
| | - Mark D Bird
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL, USA
| | - Lucio Frydman
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL, USA
- Weizmann Institute, Rehovot, Israel
| | - Joanna R Long
- McKnight Brain Institute, University of Florida, Gainesville, FL, USA
| | - Thomas H Mareci
- McKnight Brain Institute, University of Florida, Gainesville, FL, USA
| | | | - Bruce Rosen
- Massachusetts General Hospital, Harvard Medical School, Harvard, MA, USA
| | - John F Schenck
- General Electric Corporate Research, Schenectady, NY, USA
| | - Victor D Schepkin
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL, USA
| | - A Dean Sherry
- University of Texas Southwestern Medical Center, Dallas, TX, USA
| | | | | | | | | | - Lawrence L Wald
- Massachusetts General Hospital, Harvard Medical School, Harvard, MA, USA
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Ackerman JJH. The shutter-speed paradigm: not your father's DCE-MRI. NMR IN BIOMEDICINE 2016; 29:4-5. [PMID: 26608783 DOI: 10.1002/nbm.3441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
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