51
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Ezzayani K, Ben Khelifa A, Saint-Aman E, Loiseau F, Nasri H. Synthesis, spectroscopic characterizations, cyclic voltammetry investigation and molecular structure of the di-μ-cyanato-N-bis(μ-1,4,7,10,13,16-hexaoxacyclooctadecane)bis(5,10,15,20-tetraphenylporphyrinato)dimagnesiumdipotassium complex. Polyhedron 2016. [DOI: 10.1016/j.poly.2016.06.045] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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52
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Reactivity of the magnesium phthalocyanine in dry 3,5-lutidine, in 3,5-lutidine/DMSO and in 3,5-lutidine/acetylacetone systems. Polyhedron 2016. [DOI: 10.1016/j.poly.2016.05.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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53
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Liu Q, Zhang X, Zeng W, Wang J, Zhou Z. Origin of d-π Interaction in Cobalt(II) Porphyrins under Synergistic Effects of Core Contraction and Axial Ligation: Implications for a Ligand Effect of Natural Distorted Tetrapyrrole. CHINESE J CHEM 2016. [DOI: 10.1002/cjoc.201600226] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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54
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Senge MO, MacGowan SA, O'Brien JM. Conformational control of cofactors in nature - the influence of protein-induced macrocycle distortion on the biological function of tetrapyrroles. Chem Commun (Camb) 2016; 51:17031-63. [PMID: 26482230 DOI: 10.1039/c5cc06254c] [Citation(s) in RCA: 135] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Tetrapyrrole-containing proteins are one of the most fundamental classes of enzymes in nature and it remains an open question to give a chemical rationale for the multitude of biological reactions that can be catalyzed by these pigment-protein complexes. There are many fundamental processes where the same (i.e., chemically identical) porphyrin cofactor is involved in chemically quite distinct reactions. For example, heme is the active cofactor for oxygen transport and storage (hemoglobin, myoglobin) and for the incorporation of molecular oxygen in organic substrates (cytochrome P450). It is involved in the terminal oxidation (cytochrome c oxidase) and the metabolism of H2O2 (catalases and peroxidases) and catalyzes various electron transfer reactions in cytochromes. Likewise, in photosynthesis the same chlorophyll cofactor may function as a reaction center pigment (charge separation) or as an accessory pigment (exciton transfer) in light harvesting complexes (e.g., chlorophyll a). Whilst differences in the apoprotein sequences alone cannot explain the often drastic differences in physicochemical properties encountered for the same cofactor in diverse protein complexes, a critical factor for all biological functions must be the close structural interplay between bound cofactors and the respective apoprotein in addition to factors such as hydrogen bonding or electronic effects. Here, we explore how nature can use the same chemical molecule as a cofactor for chemically distinct reactions using the concept of conformational flexibility of tetrapyrroles. The multifaceted roles of tetrapyrroles are discussed in the context of the current knowledge on distorted porphyrins. Contemporary analytical methods now allow a more quantitative look at cofactors in protein complexes and the development of the field is illustrated by case studies on hemeproteins and photosynthetic complexes. Specific tetrapyrrole conformations are now used to prepare bioengineered designer proteins with specific catalytic or photochemical properties.
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Affiliation(s)
- Mathias O Senge
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, Trinity College Dublin, The University of Dublin, 152-160 Pearse Street, Dublin 2, Ireland and Medicinal Chemistry, Institute of Molecular Medicine, Trinity Centre for Health Sciences, Trinity College Dublin, St. James's Hospital, Dublin 8, Ireland.
| | - Stuart A MacGowan
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, Trinity College Dublin, The University of Dublin, 152-160 Pearse Street, Dublin 2, Ireland
| | - Jessica M O'Brien
- Medicinal Chemistry, Institute of Molecular Medicine, Trinity Centre for Health Sciences, Trinity College Dublin, St. James's Hospital, Dublin 8, Ireland.
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55
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Nasri S, Ezzayani K, Turowska-Tyrk I, Roisnel T, Nasri H. Crystal structure of an unknown solvate of (piperazine-κN){5,10,15,20-tetra-kis-[4-(benzo-yloxy)phen-yl]porphyrinato-κ(4) N}zinc. Acta Crystallogr E Crystallogr Commun 2016; 72:937-42. [PMID: 27555935 PMCID: PMC4992910 DOI: 10.1107/s2056989016009269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Accepted: 06/07/2016] [Indexed: 11/30/2022]
Abstract
The title compound, [Zn(C72H44N4O8)(C4H10N2)] or [Zn(TPBP)(pipz] (where TPBP and pipz are 5,10,15,20-tetra-kis-[4-(benzo-yloxy)phen-yl]porphyrinato and piperazine ligands respectively), features a distorted square-pyramidal coordin-ation geometry about the central Zn(II) atom. This central atom is chelated by the four N atoms of the porphyrinate anion and further coordinated by a nitro-gen atom of the piperazine axial ligand, which adopts a chair confirmation. The average Zn-N(pyrrole) bond length is 2.078 (7) Å and the Zn- N(pipz) bond length is 2.1274 (19) Å. The zinc cation is displaced by 0.4365 (4) Å from the N4C20 mean plane of the porphyrinate anion toward the piperazine axial ligand. This porphyrinate macrocycle exhibits major saddle and moderate ruffling deformations. In the crystal, the supra-molecular structure is made by parallel pairs of layers along (100), with an inter-layer distance of 4.100 Å while the distance between two pairs of layers is 4.047 Å. A region of electron density was treated with the SQUEEZE [Spek (2015 ▸). Acta Cryst. C71, 9-18] procedure in PLATON following unsuccessful attempts to model it as being part of disordered n-hexane solvent and water mol-ecules. The given chemical formula and other crystal data do not take into account these solvent mol-ecules.
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Affiliation(s)
- Soumaya Nasri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’environnement, 5019 Monastir, University of Monastir, Tunisia
| | - Khaireddine Ezzayani
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’environnement, 5019 Monastir, University of Monastir, Tunisia
| | - Ilona Turowska-Tyrk
- Faculty of Chemistry, Wroław University of Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroław, Poland
| | - Thierry Roisnel
- Centre de Diffractométrie X, Institut des Sciences Chimiques de Rennes, UMR 6226, CNRS–Université de, Rennes, 1, Campus de Beaulieu, 35042 Rennes Cedex, France
| | - Habib Nasri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’environnement, 5019 Monastir, University of Monastir, Tunisia
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56
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Dixon DW, Kim MS, Kumar V, Obara G, Marzilli LG, Schinazi RF. Amino- and Hydroxytetraphenylporphyrins with Activity against the Human Immunodeficiency Virus. ACTA ACUST UNITED AC 2016. [DOI: 10.1177/095632029200300505] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
A series of amino- and hydroxytetraphenylporphyrin derivatives was found to have activity against the human immunodeficiency virus type 1 (HIV-1) in human peripheral blood mononuclear cells. Activity tends to be associated with increased hydrophilicity of the porphyrins for the porphyrins with one substituent on each phenyl ring but there is no clear pattern for the porphyrins with two substituents on each phenyl ring. The antiviral activity of certain porphyrins has been demonstrated in the absence of light, suggesting a non-photochemical process. Whereas only some of the porphyrins that inhibit HIV-1 in culture inhibit HIV-1 reverse transcriptase in a cell-free system, none of those tested inhibit DNA polymerase α.
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Affiliation(s)
- D. W. Dixon
- Department of Chemistry, Georgia State University, Atlanta, GA 30303, USA
| | - M. S. Kim
- Department of Chemistry, Georgia State University, Atlanta, GA 30303, USA
| | - V. Kumar
- Department of Chemistry, Georgia State University, Atlanta, GA 30303, USA
| | - G. Obara
- Department of Chemistry, Georgia State University, Atlanta, GA 30303, USA
| | - L. G. Marzilli
- Department of Chemistry, Emory University, Atlanta, GA 30322, USA
| | - R. F. Schinazi
- Veterans Affairs Medical Center, Decatur, GA 30033 and Department of Pediatrics, Emory University School of Medicine, Atlanta, GA 30322, USA
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57
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Abstract
Procedures for the purification and subsequent crystallization of the slightly soluble four-coordinate metallporphines, the simplest possible porphyrin derivatives, are described. Crystals of the porphine derivatives of cobalt(II), copper(II), platinum(II), and two polymorphs of zinc(II) were obtained. Analysis of the crystal and molecular structures shows that all except the platinum(II) derivative form an unusual trimeric species in the solid state. The isomorphous cobalt(II), copper(II), and one zinc(II) polymorph pack in the unit cell to form dimers as well as the trimers. Interplanar spacings between porphine rings are similar in both the dimers and trimers and range between 3.24 and 3.37 Å. Porphine rings are strongly overlapped with lateral shifts between ring centers in both the dimers and trimers with values between 1.52 and 1.70 Å or in Category S as originally defined by Scheidt and Lee. Periodic trends in the M-Np bond distances parallel those observed previously for tetraphenyl- and octaethylporphyrin derivatives.
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Affiliation(s)
- Walter Jentzen
- Fuel Science Department, Sandia National Laboratories , Albuquerque, New Mexico 87185-0710, United States
| | - John A Shelnutt
- Department of Chemistry, University of New Mexico , Albuquerque, New Mexico 87131, United States
| | - W Robert Scheidt
- Department of Chemistry and Biochemistry, University of Notre Dame , Notre Dame, Indiana 46556, United States
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58
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Harhouri W, Mchiri C, Najmudin S, Bonifácio C, Nasri H. Synthesis, FT-IR characterization and crystal structure of aqua-(5,10,15,20-tetra-phenyl-porphyrinato-κ(4) N)manganese(III) tri-fluoro-methane-sulfonate. Acta Crystallogr E Crystallogr Commun 2016; 72:720-3. [PMID: 27308027 PMCID: PMC4908522 DOI: 10.1107/s2056989016006630] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Accepted: 04/19/2016] [Indexed: 11/23/2022]
Abstract
In the title salt, [Mn(C44H28N4)(H2O)](CF3SO3) or [Mn(III)(TPP)(H2O)](CF3SO3) (where TPP is the dianion of 5,10,15,20-tetra-phenyl-porphyrin), the Mn(III) cation is chelated by the four pyrrole N atoms of the porphyrinate anion and additionally coordinated by an aqua ligand in an apical site, completing the distorted square-pyramidal coordination environment. The average Mn-N(pyrrole) bond length is 1.998 (9) Å and the Mn-O(aqua) bond length is 2.1057 (15) Å. The central Mn(III) ion is displaced by 0.1575 (5) Å from the N4C20 mean plane of the porphyrinate anion towards the apical aqua ligand. The porphyrinate macrocycle exhibits a moderate ruffling and strong saddle deformations. In the crystal lattice, the [Mn(III)(TPP)(H2O)](+) cation and the tri-fluoro-methane-sulfonate counter-ions are arranged in alternating planes packed along [001]. The components are linked together through O-H⋯O hydrogen bonds and much weaker C-H⋯O and C-H⋯F inter-actions. The crystal packing is further stabilized by weak C-H⋯π inter-actions involving the pyrrole and phenyl rings of the porphyrin moieties.
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Affiliation(s)
- Wafa Harhouri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’Environnement, 5019 Monastir, University of Monastir, Tunisia
| | - Chadlia Mchiri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’Environnement, 5019 Monastir, University of Monastir, Tunisia
| | - Shabir Najmudin
- Faculdade de Medicina, Veterinària, Universidade Tecnica de Lisboa, Avenida da Universidade Tecnica, 1300-477 Lisboa, Portugal
| | - Cecilia Bonifácio
- REQUIMTE/CQFB Departamento de Quimica, Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal
| | - Habib Nasri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’Environnement, 5019 Monastir, University of Monastir, Tunisia
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59
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Synthesis and crystal structure of 5-(4′-carboxyphenyl)-10,15,20-tri(4′-t-butylphenyl)porphinato zinc(II) complex. J CHEM SCI 2016. [DOI: 10.1007/bf03356108] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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60
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Crystal structures of meso-tetrakis(2′,6′/3′,5′-difluorophenyl)porphyrins and their metal complexes: Influence of position of the fluoro groups on their structural properties. J CHEM SCI 2016. [DOI: 10.1007/s12039-016-1053-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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61
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Extended structure of indium(III) protoporphyrin IX acetate mimics dimer structure of hematin anhydride. Polyhedron 2016. [DOI: 10.1016/j.poly.2015.07.072] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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62
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Nasri S, Amiri N, Turowska-Tyrk I, Daran JC, Nasri H. Crystal structure of (4-cyano-pyridine-κN){5,10,15,20-tetrakis[4-(benzoyloxy)phenyl]porphyrinato-κ(4) N}zinc-4-cyano-pyridine (1/1). Acta Crystallogr E Crystallogr Commun 2016; 72:164-9. [PMID: 26958379 PMCID: PMC4770980 DOI: 10.1107/s2056989016000062] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Accepted: 01/03/2016] [Indexed: 11/15/2022]
Abstract
In the title compound, [Zn(C72H44N4O8)(C6H4N2)]·C6H4N2 or [Zn(TPBP)(4-CNpy]·(4-CNpy) [where TPBP and 4-CNpy are 5,10,15,20-(tetra-phenyl-benzoate)porphyrinate and 4-cyano-pyridine, respectively], the Zn(II) cation is chelated by four pyrrole-N atoms of the porphyrinate anion and coordinated by a pyridyl-N atom of the 4-CNpy axial ligand in a distorted square-pyramidal geometry. The average Zn-N(pyrrole) bond length is 2.060 (6) Å and the Zn-N(4-CNpy) bond length is 2.159 (2) Å. The zinc cation is displaced by 0.319 (1) Å from the N4C20 mean plane of the porphyrinate anion toward the 4-cyano-pyridine axial ligand. This porphyrinate macrocycle exhibits major saddle and moderate ruffling and doming deformations. In the crystal, the [Zn(TPBP)(4-CNpy)] complex mol-ecules are linked together via weak C-H⋯N, C-H⋯O and C-H⋯π inter-actions, forming supra-molecular channels parallel to the c axis. The non-coordinating 4-cyano-pyridine mol-ecules are located in the channels and linked with the complex mol-ecules, via weak C-H⋯N inter-actions and π-π stacking or via weak C-H⋯O and C-H⋯π inter-actions. The non-coordinating 4-cyano-pyridine mol-ecule is disordered over two positions with an occupancy ratio of 0.666 (4):0.334 (4).
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Affiliation(s)
- Soumaya Nasri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’environnement, 5019 Monastir, University of Monastir, Tunisia
| | - Nesrine Amiri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’environnement, 5019 Monastir, University of Monastir, Tunisia
| | - Ilona Turowska-Tyrk
- Faculty of Chemistry, Wroław University of Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroław, Poland
| | - Jean-Claude Daran
- Laboratoire de Chimie de Coordination, CNRS UPR 8241, 205 route de Norbonne, 31077 Toulouse, Cedex 04, France
| | - Habib Nasri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’environnement, 5019 Monastir, University of Monastir, Tunisia
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63
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Conformational and structural studies of meso monosubstituted metalloporphyrins—Edge-on molecular interactions of porphyrins in crystals. Tetrahedron 2016. [DOI: 10.1016/j.tet.2015.11.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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64
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Serth-Guzzo JA, Turowska-Tyrk I, Safo MK, Walker FA, Debrunner PG, Scheidt WR. Characterization of the mixed axial ligand complex (4-cyanopyridine)(imidazole)(tetramesitylporphinato)iron(iii) perchlorate. Stabilization by synergic bonding. J PORPHYR PHTHALOCYA 2016; 20:254-264. [DOI: 10.1142/s1088424616500206] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The reaction of [Fe(TMP)(OClO[Formula: see text]], where TMP is the dianion of tetramesitylporphyrin, with a combination of a strong [Formula: see text]-acceptor ligand and a [Formula: see text]-donating imidazole can lead to the preparation of mixed-ligand complexes [Fe(Porph)(4-CNPy)(L)][Formula: see text] where L is imidazole itself or 1-acetylimidazole and 4-cyanopyridine is the strong [Formula: see text] acceptor ligand. The stability of the new mixed-ligand pair is the presumed result of synergic bonding between the two axial ligands. The molecular structure and other characterization of the new mixed axial ligand complex, [Fe(TMP)(4-CNPy)(HIm)]ClO4 is described. The axial ligands have a relative perpendicular arrangement with Fe–N(imidazole) = 1.945 Å and Fe–N(pyridine) = 2.021 Å. The average equatorial Fe–N[Formula: see text] distance is 1.963 Å, which is consistent with the S4-ruffled TMP core. Despite the relative perpendicular arrangement of axial ligands, the EPR spectrum of the complex is a rhombic signal and not a large gmax signal. The EPR g-values are [Formula: see text] 3.05, [Formula: see text] 2.07, and [Formula: see text] 1.22. A quadrupole doublet was seen in the Mössbauer spectrum with an isomer shift of 0.197 mm/s and quadrupole splitting of 1.935 mm/s. Two crystalline forms of [Fe(TMP)(4-CNPy)(HIm)]ClO4 have been characterized; the two forms differ only in the solvent content of the lattice. Crystal data for form A: [Formula: see text] 15.432 (12) Å, [Formula: see text] 20.696 (2) Å, [Formula: see text] 19.970 (5) Å, and [Formula: see text] 99.256 (14)[Formula: see text], monoclinic, space group P21/n, V [Formula: see text] 6295 (2) Å3, Z [Formula: see text] 4, formula FeCl3O4N8C[Formula: see text]H[Formula: see text], 8397 observed data, [Formula: see text] 0.086, [Formula: see text] 0.210, refinement on [Formula: see text]. Crystal data for form B: [Formula: see text]15.267 (3) Å, [Formula: see text]20.377 (6) Å, [Formula: see text] 19.670 (4) Å, and [Formula: see text] 98.14 (1)[Formula: see text], monoclinic, space group P[Formula: see text]/n, V = 6058 (4) Å3, Z = 4, formula C[Formula: see text]H[Formula: see text]Cl[Formula: see text]FeN8O4, 5464 observed data, [Formula: see text] 0.096, [Formula: see text] 0.112, refinement on F.
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Affiliation(s)
- Judith A. Serth-Guzzo
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana USA 46556
| | - Ilona Turowska-Tyrk
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana USA 46556
| | - Martin K. Safo
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana USA 46556
| | - F. Ann Walker
- Department of Chemistry and Biochemistry, University of Arizona, Tuscon, Arizona USA 85721-0041
| | - Peter G. Debrunner
- Department of Physics, University of Illinois, Urbana, Illinois USA 61801
| | - W. Robert Scheidt
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana USA 46556
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65
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Agnihotri N, Steer RP. Time dependent DFT investigation of the optical properties of artificial light harvesting special pairs. Phys Chem Chem Phys 2016; 18:15337-51. [DOI: 10.1039/c6cp00300a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Simulated absorption spectra of (ZnTriPP)2DPB dimer in which Q band is enhanced 50 times for visibility.
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Affiliation(s)
- Neha Agnihotri
- Department of Physics
- Indian Institute of Technology (BHU)
- Varanasi-221005
- India
| | - Ronald P. Steer
- Department of Chemistry
- University of Saskatchewan
- Saskatoon
- Canada
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66
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Lanzilotto A, Büldt LA, Schmidt HC, Prescimone A, Wenger OS, Constable EC, Housecroft CE. Improved light absorbance does not lead to better DSC performance: studies on a ruthenium porphyrin–terpyridine conjugate. RSC Adv 2016. [DOI: 10.1039/c5ra27397h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Despite having a good spectral response, a bis(tpy)ruthenium complex with peripheral porphyrin and phosphonate anchoring domains gives poor photoconversion efficiency due to a triplet–triplet energy transfer process.
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Affiliation(s)
| | - Laura A. Büldt
- Department of Chemistry
- University of Basel
- CH-4056 Basel
- Switzerland
| | - Hauke C. Schmidt
- Department of Chemistry
- University of Basel
- CH-4056 Basel
- Switzerland
| | | | - Oliver S. Wenger
- Department of Chemistry
- University of Basel
- CH-4056 Basel
- Switzerland
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67
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Scheidt WR, Cheng B, Oliver AG, Goodwin JA. Solid-state Porphyrin Interactions with Oppositely Charged Peripheral Groups. J PORPHYR PHTHALOCYA 2015; 19:1256-1261. [PMID: 27547029 PMCID: PMC4986918 DOI: 10.1142/s1088424615501084] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The crystallization and the crystal and molecular structure of a very slightly soluble electrostatically interacting pair of porphyrins is described. The tetra-anion 5,10,15,20-tetrakis-(4-sulfonatophenyl)-21,23H-porphyrin [H2TPPSO3]4- and the tetra-cation 5,10,15,20-tetra(N-methylpyridyl)21H,23H-porphyrin [H2TMePyP]4+ are found to form an alternating one-dimensional stack that is stabilised by electrostatic interactions between the porphyrin rings but also by π-π interactions between all substituted phenyl rings in the ensemble. The resulting interactions between the porphyrins is exceptionally tight.
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Affiliation(s)
- W. Robert Scheidt
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Beisong Cheng
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Allen G. Oliver
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA
| | - John A. Goodwin
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA
- Department of Chemistry and Physics, Coastal Carolina University, Conway, SC 29528, USA
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68
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Pascual-Álvarez A, Vallejo J, Pardo E, Julve M, Lloret F, Krzystek J, Armentano D, Wernsdorfer W, Cano J. Field-Induced Slow Magnetic Relaxation in a Mononuclear Manganese(III)-Porphyrin Complex. Chemistry 2015; 21:17299-307. [PMID: 26481722 DOI: 10.1002/chem.201502637] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Indexed: 11/07/2022]
Abstract
We report on a novel manganese(III)-porphyrin complex with the formula [Mn(III) (TPP)(3,5-Me2 pyNO)2 ]ClO4 ⋅CH3 CN (2; 3,5-Me2 pyNO=3,5-dimethylpyridine N-oxide, H2 TPP=5,10,15,20-tetraphenylporphyrin), in which the Mn(III) ion is six-coordinate with two monodentate 3,5-Me2 pyNO molecules and a tetradentate TPP ligand to build a tetragonally elongated octahedral geometry. The environment in 2 is responsible for the large and negative axial zero-field splitting (D=-3.8 cm(-1) ), low rhombicity (E/|D|=0.04) of the high-spin Mn(III) ion, and, ultimately, for the observation of slow magnetic-relaxation effects (Ea =15.5 cm(-1) at H=1000 G) in this rare example of a manganese-based single-ion magnet (SIM). Structural, magnetic, and electronic characterizations were carried out by means of single-crystal diffraction studies, variable-temperature direct- and alternating-current measurements and high-frequency and -field EPR spectroscopic analysis followed by quantum-chemical calculations. Slow magnetic-relaxation effects were also observed in the already known analogous compound [Mn(III) (TPP)Cl] (1; Ea =10.5 cm(-1) at H=1000 G). The results obtained for 1 and 2 are compared and discussed herein.
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Affiliation(s)
| | - Julia Vallejo
- Instituto de Ciencia Molecular (ICMOL), Universitat de València, Paterna 46980, València (Spain)
| | - Emilio Pardo
- Instituto de Ciencia Molecular (ICMOL), Universitat de València, Paterna 46980, València (Spain).
| | - Miguel Julve
- Instituto de Ciencia Molecular (ICMOL), Universitat de València, Paterna 46980, València (Spain)
| | - Francesc Lloret
- Instituto de Ciencia Molecular (ICMOL), Universitat de València, Paterna 46980, València (Spain)
| | - J Krzystek
- National High Magnetic Field Laboratory (NHMFL), Florida State University, Tallahassee, Florida 32310 (USA)
| | - Donatella Armentano
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, Cosenza, 87036 (Italy)
| | - Wolfgang Wernsdorfer
- Institut Néel, CNRS, Nanoscience Department, BP 166, 380412 Grenoble Cedex 9 (France)
| | - Joan Cano
- Instituto de Ciencia Molecular (ICMOL), Universitat de València, Paterna 46980, València (Spain). .,Fundació General de la Universitat de València (FGUV), Universitat de València, Paterna 46980, València (Spain).
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69
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Pukhovskaya S, Ivanova Y, Nam DT, Vashurin A, Golubchikov O. Coordination and acid-base properties of meso-nitro derivatives of β-octaethylporphyrin. J PORPHYR PHTHALOCYA 2015. [DOI: 10.1142/s1088424615500649] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Spectrophotometric method is used to study the acid-base and coordination properties of a series of porphyrins with a continuously increasing degree of macrocycle deformation resulting from the introduction of strong electron — withdrawing substituents: 2,3,7,8,12,13,17,18-octaethylporphyrin (1), 5-nitro-2,3,7,8,12,13,17,18-octaethylporphyrin (2), 5,15-dinitro-2,3,7,8,12,13,17,18-octaethylporphyrin (3), 5,10,15-trinitro-2,3,7,8,12,13,17,18-octaethylporphyrin (4), and 5,10,15,20-tetranitro-2,3,7,8,12,13,17,18-octaethylporphyrin (5). It is found that the values of total basicity constants obtained for the investigated compounds consistently diminish with an increase in the number of meso-substituents: 11.85 (1) < 10.45 (2) < 10.31 (3) < 10.23 (4) < 9.56 (5). The values of the combined acidity constants of porphyrins (4–5) obtained in acetonitrile-DBU system at 298 K are pKa = 10.90 and 10.40 respectively. The reaction of complex formation between the porphyrins and their dianionic forms with zinc acetate was studied. It is shown that two opposing factors, the steric and electronic effects of the substituents, change the acid-base and coordination properties of the above series of compounds.
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Affiliation(s)
- Svetlana Pukhovskaya
- Department of Inorganic Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo 153000, Russia
| | - Yuliya Ivanova
- Laboratory of Coordination Chemistry of Macrocyclic Compounds, G.A. Krestov Institute of Solution Chemistry, of the Russian Academy of Sciences, Ivanovo 153045, Russia
| | - Dao The Nam
- Department of Inorganic Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo 153000, Russia
| | - Artur Vashurin
- Department of Inorganic Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo 153000, Russia
| | - Oleg Golubchikov
- Department of Organic Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo 153000, Russia
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70
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PUTTAIAH BHYRAPPA, VEERAPANDIAN VELKANNAN. Synthesis of antipodal β-trisubstituted meso-tetraphenylporphyrins and the crystal structure of hexaphenylporphinatozinc(II) bispyridinate complex. J CHEM SCI 2015. [DOI: 10.1007/s12039-015-0821-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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71
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Denden Z, Ezzayani K, Saint-Aman E, Loiseau F, Najmudin S, Bonifácio C, Daran JC, Nasri H. Insights on the UV/Vis, Fluorescence, and Cyclic Voltammetry Properties and the Molecular Structures of ZnIITetraphenylporphyrin Complexes with Pseudohalide Axial Azido, Cyanato-N, Thiocyanato-N,and Cyanido Ligands. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201403214] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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72
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Bhyrappa P, Sarangi U, Varghese B. Mixed β-pyrrole substituted meso-tetraphenylporphyrins and their metal complexes: Synthesis, structures and electrochemical redox properties. Inorganica Chim Acta 2015. [DOI: 10.1016/j.ica.2014.10.031] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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73
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Harhouri W, Dhifaoui S, Najmudin S, Bonifácio C, Nasri H. Crystal structure of chlorido-(5,10,15,20-tetra-phenyl-porphyrinato-κ(4) N)manganese(III) 2-amino-pyridine disolvate. Acta Crystallogr E Crystallogr Commun 2015; 71:165-7. [PMID: 25878809 PMCID: PMC4384609 DOI: 10.1107/s205698901500050x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2014] [Accepted: 01/10/2015] [Indexed: 11/30/2022]
Abstract
In the title compound, [Mn(C44H28N4)Cl]·2C5H6N2, the Mn(III) centre is coordinated by four pyrrole N atoms [averaged Mn-N = 2.012 (4) Å] of the tetra-phenyl-porphyrin mol-ecule and one chloride axial ligand [Mn-Cl = 2.4315 (7) Å] in a square-pyramidal geometry. The porphyrin macrocycle exhibits a non-planar conformation with major ruffling and saddling distortions. In the crystal, two independent solvent mol-ecules form dimers through N-H⋯N hydrogen bonding. In these dimers, one amino N atom has a short Mn⋯N contact of 2.642 (1) Å thus completing the Mn environment in the form of a distorted octa-hedron, and another amino atom generates weak N-H⋯Cl hydrogen bonds, which link further all mol-ecules into chains along the a axis.
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Affiliation(s)
- Wafa Harhouri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’Environnement, 5019 Monastir, University of Monastir, Tunisia
| | - Salma Dhifaoui
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’Environnement, 5019 Monastir, University of Monastir, Tunisia
| | - Shabir Najmudin
- Faculdade de Medicina, Veterinària, Universidade Tecnica de Lisboa, Avenida da Universidade Tecnica, 1300-477 Lisboa, Portugal
| | - Cecilia Bonifácio
- REQUIMTE/CQFB Departamento de Quimica, Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal
| | - Habib Nasri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l’Environnement, 5019 Monastir, University of Monastir, Tunisia
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74
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Velkannan V, Bhyrappa P. Unsymmetrically mixed β-octasubstituted meso-tetraphenylporphyrins: Structural and electrochemical redox properties. Polyhedron 2015. [DOI: 10.1016/j.poly.2014.10.033] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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75
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Karilainen T, Cramariuc O, Kuisma M, Tappura K, Hukka TI. van der Waals interactions are critical in Car-Parrinello molecular dynamics simulations of porphyrin-fullerene dyads. J Comput Chem 2015; 36:612-21. [DOI: 10.1002/jcc.23834] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2014] [Revised: 11/28/2014] [Accepted: 12/12/2014] [Indexed: 11/07/2022]
Affiliation(s)
- Topi Karilainen
- Department of Physics; Tampere University of Technology; Tampere Finland
| | - Oana Cramariuc
- Department of Physics; Tampere University of Technology; Tampere Finland
| | - Mikael Kuisma
- Department of Physics; Tampere University of Technology; Tampere Finland
| | - Kirsi Tappura
- VTT Technical Research Centre of Finland; P.O. Box 1300 FI-33101 Tampere Finland
| | - Terttu I. Hukka
- Department of Chemistry and Bioengineering; Tampere University of Technology; P.O. Box 541 33101 Tampere Finland
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76
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Yu Q, Liu Y, Liu D, Li J. Geometric and electronic structures of five-coordinate manganese(ii) “picket fence” porphyrin complexes. Dalton Trans 2015; 44:9382-90. [DOI: 10.1039/c5dt00685f] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The X-ray structural investigation rationalized the variable axial ligand distances. EPR revealed five resonance positions and the simulations gave reasonable zero field splitting parameters.
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Affiliation(s)
- Qiang Yu
- Research Institute of Applied Chemistry
- Shanxi University
- Taiyuan
- China
- College of Materials Science and Opto-electronic Technology
| | - Yanhong Liu
- Technical Institute of Physics and Chemistry
- Beijing
- China
| | - Diansheng Liu
- Research Institute of Applied Chemistry
- Shanxi University
- Taiyuan
- China
| | - Jianfeng Li
- College of Materials Science and Opto-electronic Technology
- University of Chinese Academy of Sciences
- Beijing
- China
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77
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Nam DT, Ivanova YB, Puhovskaya SG, Kruk MM, Syrbu SA. Acid–base equilibria and coordination chemistry of the 5,10,15,20-tetraalkyl-porphyrins: implications for metalloporphyrin synthesis. RSC Adv 2015. [DOI: 10.1039/c5ra01323b] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Easy formation of metalloporphyrins from the doubly deprotonated porphyrin P2− is reported.
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Affiliation(s)
- Dao Tkhe Nam
- Ivanovo State University of Chemistry and Technology
- Ivanovo
- Russian Federation
| | - Yulia B. Ivanova
- Institute of Solution Chemistry of Russian Academy of Sciences
- Ivanovo
- Russian Federation
| | | | - Mikalai M. Kruk
- Belarusian State Technological University
- Physics Department
- Minsk
- Belarus
| | - Sergei A. Syrbu
- Ivanovo State University of Chemistry and Technology
- Ivanovo
- Russian Federation
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78
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Kumar R, Sankar M. Synthesis, Spectral, and Electrochemical Studies of Electronically Tunable β-Substituted Porphyrins with Mixed Substituent Pattern. Inorg Chem 2014; 53:12706-19. [DOI: 10.1021/ic501259g] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Ravi Kumar
- Department of Chemistry, Indian Institute of Technology Roorkee, Roorkee - 247667, India
| | - Muniappan Sankar
- Department of Chemistry, Indian Institute of Technology Roorkee, Roorkee - 247667, India
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79
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Bhyrappa P, Sarangi UK, Varghese B. Switching the Macrocycle Conformation from Nonplanar to Planar in Cobalt(II) and Copper(II) β‐Tetra‐2′‐thienyl‐
meso
‐tetraphenylporphyrin Cocrystallates with C
60. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402763] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Puttaiah Bhyrappa
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600 036, Tamil Nadu, India http://chem.iitm.ac.in/faculty/bhyrappa
| | - Ujwal K. Sarangi
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600 036, Tamil Nadu, India http://chem.iitm.ac.in/faculty/bhyrappa
| | - Babu Varghese
- Sophisticated Analytical Instrument Facility, Indian Institute of Technology Madras, Chennai 600 036, Tamil Nadu, India
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80
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Bhyrappa P, Sarangi UK, Velkannan V, Ramkumar V. β‐Tetrasubstituted
meso
‐Tetra(4′‐
n
‐butylphenyl)porphyrins and Their Metal Complexes: Synthesis and Structural Properties. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402661] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Puttaiah Bhyrappa
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India, http://chem.iitm.ac.in/faculty/bhyrappa/
| | - Ujwal K. Sarangi
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India, http://chem.iitm.ac.in/faculty/bhyrappa/
| | - Veerapandian Velkannan
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India, http://chem.iitm.ac.in/faculty/bhyrappa/
- Present address: Department of Chemistry, Thiagarajar College of Engineering Madurai 625015, Tamil Nadu, India
| | - Venkatachalam Ramkumar
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India, http://chem.iitm.ac.in/faculty/bhyrappa/
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81
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Kuter D, Streltsov V, Davydova N, Venter GA, Naidoo KJ, Egan TJ. Molecular structures and solvation of free monomeric and dimeric ferriheme in aqueous solution: insights from molecular dynamics simulations and extended X-ray absorption fine structure spectroscopy. Inorg Chem 2014; 53:10811-24. [PMID: 25275882 DOI: 10.1021/ic500454d] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
CHARMM force field parameters have been developed to model nonprotein bound five-coordinate ferriheme (ferriprotoporphyrin IX) species in aqueous solution. Structures and solvation were determined from molecular dynamics (MD) simulations at 298 K of monomeric [HO-ferriheme](2-), [H2O-ferriheme](-), and [H2O-ferriheme](0); π-π dimeric [(HO-ferriheme)2](4-), [(H2O-ferriheme)(HO-ferriheme)](3-), [(H2O-ferriheme)2](2-), and [(H2O-ferriheme)2](0); and μ-oxo dimeric [μ-(ferriheme)2O](4-). Solvation of monomeric species predominated around the axial ligand, meso-hydrogen atoms of the porphyrin ring (Hmeso), and the unligated face. Existence of π-π ferriheme dimers in aqueous solution was supported by MD calculations where such dimers remained associated over the course of the simulation. Porphyrin rings were essentially coplanar. In these dimers major and minor solvation was observed around the axial ligand and Hmeso positions, respectively. In μ-oxo ferriheme, strong solvation of the unligated face and bridging oxide ligand was observed. The solution structure of the μ-oxo dimer was investigated using extended X-ray absorption fine structure (EXAFS) spectroscopy. The EXAFS spectrum obtained from frozen solution was markedly different from that recorded on dried μ-oxo ferriheme solid. Inclusion of five solvent molecules obtained from spatial distribution functions in the structure generated from MD simulation was required to produce acceptable fits to the EXAFS spectra of the dimer in solution, while the solid was suitably fitted using the crystal structure of μ-oxo ferriheme dimethyl ester which included no solvent molecules.
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Affiliation(s)
- David Kuter
- Scientific Computing Research Unit, †Department of Chemistry, University of Cape Town , Private Bag, Rondebosch 7701, South Africa
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82
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Senge MO, Eckhardt HG. Crystal structure of 5,10,15-triphenyl-20-(4,4,5,5-tetra-methyl-1,3,2-dioxaborolan-2-yl)porphyrin. Acta Crystallogr Sect E Struct Rep Online 2014; 70:o1085-o1086. [PMID: 25484685 PMCID: PMC4257212 DOI: 10.1107/s1600536814019680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2014] [Accepted: 09/01/2014] [Indexed: 06/04/2023]
Abstract
In the title compound, C44H37BN4O2, the dihedral angle between the plane of the porphyrin macrocycle ring system [r.m.s. deviation = 0.159 (1) Å] and those of three phenyl rings are 66.11 (4), 74.75 (4) and 57.00 (4)°. The conformational distortion is characterized by a mixture of ruffled, saddle and in-plane distortion modes. In the crystal, the porphyrin mol-ecules are linked by C-H⋯π inter-actions into supra-molecular chains running along the a-axis direction. A pair of bifurcated N-H⋯(N,N) hydrogen bonds occur across the central region of the macrocycle.
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Affiliation(s)
- Mathias O. Senge
- SFI Tetrapyrrole Laboratory, School of Chemistry, Trinity College Dublin, Dublin 2, Ireland
| | - Hans-Georg Eckhardt
- SFI Tetrapyrrole Laboratory, School of Chemistry, Trinity College Dublin, Dublin 2, Ireland
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83
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84
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Ezzayani K, Denden Z, Najmudin S, Bonifácio C, Saint-Aman E, Loiseau F, Nasri H. Exploring the Effects of Axial Pseudohalide Ligands on the Photophysical and Cyclic Voltammetry Properties and Molecular Structures of MgIITetraphenyl/porphyrin Complexes. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402546] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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85
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86
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Senge MO, Dahms K. (5-n-Butyl-10,20-diiso-butyl-porphyrin-ato)nickel(II). Acta Crystallogr Sect E Struct Rep Online 2014; 70:m251. [PMID: 25161518 PMCID: PMC4120589 DOI: 10.1107/s1600536814012884] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Accepted: 06/03/2014] [Indexed: 11/13/2022]
Abstract
The asymmetric unit of the title compound, [Ni(C32H36N4)], contains two independent molecules exhibiting an overall ruffled conformation of the porphyrin macrocycle and differing mainly in the positions of the methyl groups. The average Ni—N bond lengths are 1.912 (2) and 1.910 (2) Å in the two molecules. The molecules form a closely spaced lattice structure in which neighbouring porphyrins are oriented in a nearly perpendicular fashion to each other. The compound was prepared via nucleophilic substitution of (5,15-diisobutylporphyrinato)nickel(II) with n-butyllithium.
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Affiliation(s)
- Mathias O Senge
- SFI Tetrapyrrole Laboratory, School of Chemistry, Trinity College Dublin, Dublin 2, Ireland
| | - Katja Dahms
- SFI Tetrapyrrole Laboratory, School of Chemistry, Trinity College Dublin, Dublin 2, Ireland
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87
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Wyllie GRA, Silvernail NJ, Oliver AG, Schulz CE, Scheidt WR. Iron nitrosyl "natural" porphyrinates: does the porphyrin matter? Inorg Chem 2014; 53:3763-8. [PMID: 24620710 PMCID: PMC3993899 DOI: 10.1021/ic500086k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
The
synthesis and spectroscopic characterization of three five-coordinate
nitrosyliron(II) complexes, [Fe(Porph)(NO)], are reported. These three
nitrosyl derivatives, where Porph represents protoporphyrin IX dimethyl
ester, mesoporphyrin IX dimethyl ester, or deuteroporphyrin IX dimethyl
ester, display notable differences in their properties relative to
the symmetrical synthetic porphyrins such as OEP and TPP. The N–O
stretching frequencies are in the range of 1651–1660 cm–1, frequencies that are lower than those of synthetic
porphyrin derivatives. Mössbauer spectra obtained in both zero
and applied magnetic field show that the quadrupole splitting values
are slightly larger than those of known synthetic porphyrins. The
electronic structures of these naturally occurring porphyrin derivatives
are thus seen to be consistently different from those of the synthetic
derivatives, the presumed consequence of the asymmetric peripheral
substituent pattern. The molecular structure of [Fe(PPIX-DME)(NO)]
has been determined by X-ray crystallography. Although disorder of
the axial nitrosyl ligand limits the structural quality, this derivative
appears to show the same subtle structural features as previously
characterized five-coordinate nitrosyls. The synthesis and characterization of
three five-coordination
{FeNO}7 porphyrin derivatives based on natural porphyrin
substitution patterns show that there are systematic differences compared
to synthetic porphyrin derivatives with more symmetric substitution
patterns. Characterization includes high-field Mössbauer spectroscopy
and a crystal structure of the protoporphyrin IX dimethyl ester derivative.
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Affiliation(s)
- Graeme R A Wyllie
- Department of Chemistry and Biochemistry, University of Notre Dame , Notre Dame, Indiana 46556, United States
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88
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Janczak J. Synthesis, characterisation and DFT calculations of the magnesium phthalocyanine complexes with n-butanol and n-pentanol. Polyhedron 2014. [DOI: 10.1016/j.poly.2013.12.032] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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89
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Dey S, Rath SP. Syn–anti conformational switching in an ethane-bridged Co(ii)bisporphyrin induced by external stimuli: effects of inter-macrocyclic interactions, axial ligation and chemical and electrochemical oxidations. Dalton Trans 2014; 43:2301-14. [DOI: 10.1039/c3dt52784k] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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90
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Seidel RW, Goddard R, Oppel IM. Isomorphous free-base, Ni(ii)- and Cu(ii)-5,10,15,20-tetra(4-hydroxyphenyl)porphyrin nitrobenzene hexasolvates with tetragonal 3D hydrogen-bonded network structures. CrystEngComm 2014. [DOI: 10.1039/c4ce01881h] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The crystal structures of 5,10,15,20-tetra(4-hydroxyphenyl)-21,23H-porphyrin nitrobenzene hexasolvate (1), 5,10,15,20-tetra(4-hydroxyphenyl)porphyrinatonickel(ii) and -copper(ii)nitrobenzene hexasolvates (2and3) are described.
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Affiliation(s)
- Rüdiger W. Seidel
- Lehrstuhl für Analytische Chemie
- Ruhr-Universität Bochum
- Universitätsstraße 150
- 44780 Bochum, Germany
| | - Richard Goddard
- Max-Planck-Institut für Kohlenforschung
- 45470 Mülheim an der Ruhr, Germany
| | - Iris M. Oppel
- Institut für Anorganische Chemie
- Rheinisch-Westfälische Technische Hochschule Aachen
- 52074 Aachen, Germany
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91
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Mansour A, Belghith Y, Belkhiria MS, Bujacz A, Guérineau V, Nasri H. Synthesis, crystal structures and spectroscopic characterization of Co(II) bis(4,4′-bipyridine) with meso-porphyrins α,β,α,β-tetrakis(o-pivalamidophenyl) porphyrin (α,β,α,β-TpivPP) and tetraphenylporphyrin (TPP). J PORPHYR PHTHALOCYA 2013. [DOI: 10.1142/s1088424613500843] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The reaction of the starting materials [ Co II ( Porph )] (Porph = α,α,α,α-tetrakis(o-pivalamidophenyl)porphyrin (TpivPP) and the meso-tetraphenylporphyrin (TPP)) with an excess of 4,4′-bipyridine in chlorobenzene leads to the creation of two cobalt(II) derivatives: [ Co II (α,β,α,β- TpivPP )(4,4′- bpy )2]· C 6 H 5 Cl · C 6 H 14(1) and [ Co II ( TPP )(4,4′- bpy )2]·2 bpy (2). These compounds have been characterized by UV-vis, IR, 1 H NMR and MALDI-TOF spectroscopy. The proton NMR spectra of (1) and (2) clearly indicated that these derivatives are paramagnetic while the UV-vis data confirmed creation of a new six-coordinated or penta-coordinated Co ( II )-meso-porphyrin complexes by displaying red shifted Soret bands. The determined X-ray structures of (1) and (2) show that in the solid state these species are considered as coordination polymers which consist of 1D chains of alternating [ Co II ( Porph )] and 4,4′-bipyridine molecules located at the axial positions of the cobalt(II) coordination sphere. The coordination geometry of Co ( II ) in (1) and (2) is octahedral; the porphyrin (TpivPP or TPP) acts as a tetradentate chelating ligand with four nitrogen atoms from the pyrrole moieties occupying the equatorial positions along the porphyrin core. The N -donor atoms of the 4,4′-bipyridine create the axial ligands. It is noteworthy that for complex (1) the starting porphyrin is the α,α,α,α-TpivPP atropisomer but the final coordination polymer contains the α,β,α,β-TpivPP conformer.
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Affiliation(s)
- Anissa Mansour
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Université de Monastir, Avenue de l'environnement, 5019 Monastir, Tunisia
| | - Yassin Belghith
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Université de Monastir, Avenue de l'environnement, 5019 Monastir, Tunisia
| | - Mohamed Salah Belkhiria
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Université de Monastir, Avenue de l'environnement, 5019 Monastir, Tunisia
| | - Anna Bujacz
- Institute of Technical Biochemistry, Lodz University of Technology, Stefanowskiego 4/10, 90-924 Lodz, Poland
| | - Vincent Guérineau
- Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, 91190 Gif-sur-Yvette, France
| | - Habib Nasri
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Université de Monastir, Avenue de l'environnement, 5019 Monastir, Tunisia
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92
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Senge MO. 5,15-Bis(4-pentyl-oxyphen-yl)porphyrin. Acta Crystallogr Sect E Struct Rep Online 2013; 69:o1048. [PMID: 24046623 PMCID: PMC3772480 DOI: 10.1107/s160053681301550x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2013] [Accepted: 06/04/2013] [Indexed: 11/11/2022]
Abstract
In the title compound, C42H42N4O2, the complete molecule is generated by a crystallographic inversion centre. The porphyrin system exhibits a near planar macrocycle conformation with an average deviation from the least-squares plane of the 24 macrocycle atoms of 0.037 (5) Å. The phenyl ipso C atoms are positioned above and below the porphyrin plane by 0.35 (1) Å and the macrocycle shows evidence of in-plane rectangular elongation with N⋯N separations of 3.032 (5) and 2.803 (5) Å. Two intramolecular N—H⋯N hydrogen bonds occur.
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Affiliation(s)
- Mathias O Senge
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, 152-160 Pearse Street, Trinity College Dublin, Dublin 2, Ireland
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93
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Toumi H, Belghith Y, Daran JC, Nasri H. Aqua-(5,10,15,20-tetra-phenyl-porphyrin-ato-κ(4) N)cadmium(II)-18-crown-6 (1/1). Acta Crystallogr Sect E Struct Rep Online 2013; 69:m354-5. [PMID: 24046545 PMCID: PMC3772402 DOI: 10.1107/s160053681301489x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2013] [Accepted: 05/30/2013] [Indexed: 11/10/2022]
Abstract
The title compound, [Cd(C44H28N4)(H2O)]·(C12H24O6), was made by the reaction of the [Cd(TPP)] with an excess of 18-crown-6 in chloro-benzene (where TPP is tetra-phenyl-porphyrinate). The Cd(II) cation is chelated by a TPP anion and coordinated by a water mol-ecule in a distorted N4O square-pyramidal geometry, the Cd(II) cation being displaced by 0.7533 (9) Å from the mean plane of four N atoms of TPP anion. The porphyrin core presents a significant distortion, the maximum atomic deviation from the 24-atom mean plane is 0.1517 (2) Å. The 18-crown-6 mol-ecule is linked with the Cd(II) complex via classical O-H⋯O hydrogen bonds. In the crystal, weak C-H⋯π inter-actions link the complex and 18-crown-6 mol-ecules into a three-dimensional supra-molecular architecture.
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Affiliation(s)
- Hamza Toumi
- Laboratoire de Physico-chimie des Matériaux, Faculté des Sciences de Monastir, Avenue de l'environnement, 5019 Monastir, University of Monastir, Tunisia
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94
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Zhang Y, Jiang J, Hu C. Synthesis and Characterization of Iron(III) Complexes of 5-(8-Carboxy-1-naphthyl)-10, 15, 20-tritolyl Porphyrin. Z Anorg Allg Chem 2013. [DOI: 10.1002/zaac.201300136] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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95
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Lomont JP, Nguyen SC, Harris CB. Direct Observation of a Bent Carbonyl Ligand in a 19-Electron Transition Metal Complex. J Phys Chem A 2013; 117:2317-24. [DOI: 10.1021/jp311732t] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Justin P. Lomont
- Department of Chemistry, University of California, Berkeley, California, 94720, United States
- Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley California, 94720, United
States
| | - Son C. Nguyen
- Department of Chemistry, University of California, Berkeley, California, 94720, United States
- Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley California, 94720, United
States
| | - Charles B. Harris
- Department of Chemistry, University of California, Berkeley, California, 94720, United States
- Chemical Science Division, Lawrence Berkeley National Laboratory, Berkeley California, 94720, United
States
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96
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Janczak J, Kubiak R. Structural investigations of the axially ligated beryllium phthalocyanine derivatives. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2012.04.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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97
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Bhowmik S, Ghosh SK, Layek S, Verma HC, Rath SP. Protonation of an Oxo-Bridged Diiron Unit Gives Two Different Iron Centers: Synthesis and Structure of a New Class of Diiron(III)-μ-hydroxo Bisporphyrins and the Control of Spin States by Using Counterions. Chemistry 2012; 18:13025-37. [DOI: 10.1002/chem.201201466] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2012] [Indexed: 11/07/2022]
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98
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Senge MO. [5,15-Bis(2-methyl-prop-yl)porphyrinato]nickel(II). Acta Crystallogr Sect E Struct Rep Online 2012; 68:m1191-2. [PMID: 22969482 PMCID: PMC3435609 DOI: 10.1107/s1600536812035726] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2012] [Accepted: 08/14/2012] [Indexed: 12/03/2022]
Abstract
The title compound, [Ni(C(28)H(28)N(4))], crystallizes with two independent mol-ecules in the unit cell, one of which is located on an inversion center. Both macrocycles exhibit a planar conformation with average deviation from the least-squares-plane of the 24 macrocycle atoms of Δ24 = 0.043 Å for the first mol-ecule and 0.026 Å for the mol-ecule located on an inversion center. The average Ni-N bond lengths are 1.955 (2) and 1.956 (2) Å in the two mol-ecules. The mol-ecules form π-π dimers of inter-mediary strength with a mean plane separation of 3.36 (2) Å.
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Affiliation(s)
- Mathias O Senge
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, 152-160 Pearse Street, Trinity College Dublin, Dublin 2, Ireland
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99
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Chaudhary A, Rath SP. Encapsulation of TCNQ and the Acridinium Ion within a Bisporphyrin Cavity: Synthesis, Structure, and Photophysical and HOMO-LUMO-Gap-Mediated Electron-Transfer Properties. Chemistry 2012; 18:7404-17. [DOI: 10.1002/chem.201200034] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2012] [Indexed: 11/09/2022]
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100
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Bhyrappa P, Velkannan V. β-Tetrakis(2-thienyl)-meso-tetraphenylporphyrins: Synthesis, structural and electrochemical redox properties. Inorganica Chim Acta 2012. [DOI: 10.1016/j.ica.2011.12.053] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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