51
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Eichinger M, Grubm�ller H, Heller H, Tavan P. FAMUSAMM: An algorithm for rapid evaluation of electrostatic interactions in molecular dynamics simulations. J Comput Chem 1997. [DOI: 10.1002/(sici)1096-987x(19971115)18:14%3c1729::aid-jcc3%3e3.0.co;2-m] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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52
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Picosecond fluorescence spectroscopy of the purple membrane of Halobacterium halobium in alkaline suspension. Chem Phys Lett 1997. [DOI: 10.1016/s0009-2614(97)01509-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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53
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Ujj L, Jäger F, Popp A, Atkinson G. Vibrational spectrum of the K-590 intermediate in the bacteriorhodopsin photocycle at room temperature: picosecond time-resolved resonance coherent anti-Raman spectroscopy. Chem Phys 1996. [DOI: 10.1016/s0301-0104(96)00201-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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54
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Jäger F, Ujj L, Atkinson GH, Sheves M, Livnah N, Ottolenghi M. Vibrational Spectrum of K-590 Containing 13C14,15 Retinal: Picosecond Time-Resolved Coherent Anti-Stokes Raman Spectroscopy of the Room Temperature Bacteriorhodopsin Photocycle. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp961131i] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | | | | | | | | | - M. Ottolenghi
- Department of Chemistry, Hebrew University, Jerusalem, Israel
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55
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Calcium and Magnesium Binding in Native and Structurally Perturbed Purple Membrane. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp952951i] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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56
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Ujj L, Volodin B, Popp A, Delaney J, Atkinson G. Picosecond resonance coherent anti-Stokes Raman spectroscopy of bacteriorhodopsin: spectra and quantitative third-order susceptibility analysis of the light-adapted BR-570. Chem Phys 1994. [DOI: 10.1016/0301-0104(94)00005-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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57
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Femtosecond time-resolved fluorescence spectroscopy of bacteriorhodopsin: Direct observation of excited state dynamics in the primary step of the proton pump cycle. Biophys Chem 1993. [DOI: 10.1016/0301-4622(93)85002-y] [Citation(s) in RCA: 113] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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58
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Kandori H, Yoshihara K, Tomioka H, Sasabe H, Shichida Y. Comparative study of primary photochemical events of two retinal proteins, bacteriorhodopsin and halorhodopsin, by use of subpicosecond time-resolved spectroscopy. Chem Phys Lett 1993. [DOI: 10.1016/0009-2614(93)87078-h] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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59
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Kandori H, Yoshihara K, Tomioka H, Sasabe H. Subpicosecond transient absorption spectrum of the excited state of a retinal protein, halorhodopsin. Chem Phys Lett 1991. [DOI: 10.1016/0009-2614(91)90439-g] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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60
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Blanchard D, Gilmore D, Brack T, Lemaire H, Hughes D, Atkinson G. Picosecond time-resolved absorption and fluorescence in the bacteriorhodopsin photocycle: Vibrationally-excited species. Chem Phys 1991. [DOI: 10.1016/0301-0104(91)89050-k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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61
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Femtosecond resonance Raman spectroscopy of photochemical and photophysical changes in the chromophores of some proteins. Proteins 1991. [DOI: 10.1007/978-94-010-9063-6_22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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62
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Affiliation(s)
- Y Shichida
- Department of Biophysics, Faculty of Science, Kyoto University, Japan
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63
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Birge RR, Fleitz PA, Lawrence AF, Masthay MA, Zhang CF. Nonlinear Optical Properties of Bacteriorhodopsin: Assignment of Second Order Hyperpolarizabilities of Randomly Oriented Systems Using Two-Photon Spectroscopy. ACTA ACUST UNITED AC 1990. [DOI: 10.1080/00268949008037226] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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64
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Birge RR, Zhang C. Two‐photon double resonance spectroscopy of bacteriorhodopsin. Assignment of the electronic and dipolar properties of the low‐lying1A*−g‐like and1B*+u‐like π, π* states. J Chem Phys 1990. [DOI: 10.1063/1.458206] [Citation(s) in RCA: 143] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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65
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Picosecond fluorescence spectroscopy of purple membrane in Halobacterium halobium with a photon-counting streak camera. Chem Phys Lett 1990. [DOI: 10.1016/0009-2614(90)85150-b] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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66
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Birge RR. Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin. BIOCHIMICA ET BIOPHYSICA ACTA 1990; 1016:293-327. [PMID: 2184895 DOI: 10.1016/0005-2728(90)90163-x] [Citation(s) in RCA: 302] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- R R Birge
- Department of Chemistry, Syracuse University, NY 13244
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67
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Brack T, Atkinson G. Picosecond time-resolved resonance Raman spectrum of the K-590 intermediate in the room temperature bacteriorhodopsin photocycle. J Mol Struct 1989. [DOI: 10.1016/0022-2860(89)80018-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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68
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Ottolenghi M, Sheves M. Synthetic retinals as probes for the binding site and photoreactions in rhodopsins. J Membr Biol 1989; 112:193-212. [PMID: 2693733 DOI: 10.1007/bf01870951] [Citation(s) in RCA: 53] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- M Ottolenghi
- Department of Physical Chemistry, Hebrew University of Jerusalem, Israel
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69
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Holzwarth AR. Applications of ultrafast laser spectroscopy for the study of biological systems. Q Rev Biophys 1989; 22:239-326. [PMID: 2695961 DOI: 10.1017/s0033583500002985] [Citation(s) in RCA: 65] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The discovery of mode-locked laser operation now nearly two decades ago has started a development which enables researchers to probe the dynamics of ultrafast physical and chemical processes at the molecular level on shorter and shorter time scales. Naturally the first applications were in the fields of photophysics and photochemistry where it was then possible for the first time to probe electronic and vibrational relaxation processes on a sub-nanosecond timescale. The development went from lasers producing pulses of many picoseconds to the shortest pulses which are at present just a few femtoseconds long. Soon after their discovery ultrashort pulses were applied also to biological systems which has revealed a wealth of information contributing to our understanding of a broadrange of biological processes on the molecular level.It is the aim of this review to discuss the recent advances and point out some future trends in the study of ultrafast processes in biological systems using laser techniques. The emphasis will be mainly on new results obtained during the last 5 or 6 years. The term ultrafast means that I shall restrict myself to sub-nanosecond processes with a few exceptions.
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Affiliation(s)
- A R Holzwarth
- Max-Planck-Institut für Strahlenchemie, Mülheim/Ruhr, FRG
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70
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Trissl HW, Gärtner W, Leibl W. Reversed picosecond charge displacement from the photoproduct K of bacteriorhodopsin demonstrated photoelectrically. Chem Phys Lett 1989. [DOI: 10.1016/0009-2614(89)87381-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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71
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Dioumaev A, Savransky V, Tkachenko N, Chukharev V. Quantum yield and extinction measurements in strongly overlapping reactant and photoproduct absorption bands. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 1989. [DOI: 10.1016/1011-1344(89)80044-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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72
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73
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Photochemical quantum yield of bacteriorhodopsin from resonance Raman scattering as a probe for photolysis. Chem Phys 1989. [DOI: 10.1016/0301-0104(89)87078-8] [Citation(s) in RCA: 31] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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74
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Atkinson G, Brack T, Blanchard D, Rumbles G. Picosecond time-resolved resonance Raman spectroscopy of the initial trans to cis isomerization in the bacteriorhodopsin photocycle. Chem Phys 1989. [DOI: 10.1016/0301-0104(89)87077-6] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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75
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Pollard WT, Cruz CHB, Shank CV, Mathies RA. Direct observation of the excited‐state cis–trans photoisomerization of bacteriorhodopsin: Multilevel line shape theory for femtosecond dynamic hole burning and its application. J Chem Phys 1989. [DOI: 10.1063/1.456658] [Citation(s) in RCA: 93] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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76
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Zundel G. Proton transfer in and proton polarizability of hydrogen bonds: IR and theoretical studies regarding mechanisms in biological systems. J Mol Struct 1988. [DOI: 10.1016/0022-2860(88)80078-4] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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77
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Mathies RA, Brito Cruz CH, Pollard WT, Shank CV. Direct observation of the femtosecond excited-state cis-trans isomerization in bacteriorhodopsin. Science 1988; 240:777-9. [PMID: 3363359 DOI: 10.1126/science.3363359] [Citation(s) in RCA: 393] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Femtosecond optical measurement techniques have been used to study the primary photoprocesses in the light-driven transmembrane proton pump bacteriorhodopsin. Light-adapted bacteriorhodopsin was excited with a 60-femtosecond pump pulse at 618 nanometers, and the transient absorption spectra from 560 to 710 nanometers were recorded from -50 to 1000 femtoseconds by means of 6-femtosecond probe pulses. By 60 femtoseconds, a broad transient hole appeared in the absorption spectrum whose amplitude remained constant for about 200 femtoseconds. Stimulated emission in the 660- to 710-nanometer region and excited-state absorption in the 560- to 580-nanometer region appeared promptly and then shifted and decayed from 0 to approximately 150 femtoseconds. These spectral features provide a direct observation of the 13-trans to 13-cis torsional isomerization of the retinal chromophore on the excited-state potential surface. Absorption due to the primary ground-state photoproduct J appears with a time constant of approximately 500 femtoseconds.
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Affiliation(s)
- R A Mathies
- Department of Chemistry, University of California, Berkeley 94720
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78
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Zinth W. Die schnellsten molekularen Vorg�nge bei der Photosynthese von Bakteriorhodopsin. Naturwissenschaften 1988. [DOI: 10.1007/bf00735573] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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79
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80
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81
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Trissl HW, Breton J, Deprez J, Leibl W. Primary electrogenic reactions of Photosystem II as probed by the light-gradient method. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1987. [DOI: 10.1016/0005-2728(87)90052-1] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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82
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Petrich J, Breton J, Martin J, Antonetti A. Femtosecond absorption spectroscopy of light-adapted and dark-adapted bacteriorhodopsin. Chem Phys Lett 1987. [DOI: 10.1016/0009-2614(87)80902-8] [Citation(s) in RCA: 71] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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83
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Femtosecond Absorption Studies of the Primary Events in Bacterial Photosynthesis and Light- and Dark-Adapted Bacteriorhodopsin. ACTA ACUST UNITED AC 1987. [DOI: 10.1007/978-3-642-72835-8_6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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84
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Greene B, Orenstein J, Millard R, Williams L. Picosecond relaxation dynamics in polydiacetylene-pTS. Chem Phys Lett 1987. [DOI: 10.1016/0009-2614(87)80577-8] [Citation(s) in RCA: 69] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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85
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86
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Rettig W. Charge Separation in Excited States of Decoupled Systems?TICT Compounds and Implications Regarding the Development of New Laser Dyes and the Primary Process of Vision and Photosynthesis. ACTA ACUST UNITED AC 1986. [DOI: 10.1002/anie.198609711] [Citation(s) in RCA: 1103] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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87
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Rettig W. Ladungstrennung in angeregten Zuständen entkoppelter Systeme – TICT-Verbindungen und Implikationen für die Entwicklung neuer Laserfarbstoffe sowie für den Primärprozeß von Sehvorgang und Photosynthese. Angew Chem Int Ed Engl 1986. [DOI: 10.1002/ange.19860981104] [Citation(s) in RCA: 209] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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88
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Polland H, Franz M, Zinth W, Kaiser W, Oesterhelt D. Energy transfer from retinal to amino acids — a time-resolved study of the ultraviolet emission of bacteriorhodopsin. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1986. [DOI: 10.1016/0005-2728(86)90077-0] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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89
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90
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Femtosecond Studies of the Reaction Center of Rhodopseudomonas viridis: The Very First Dynamics of the Electron-Transfer Processes. ACTA ACUST UNITED AC 1985. [DOI: 10.1007/978-3-642-82688-7_39] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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91
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Picosecond and Nanosecond Resonance Raman Evidence for Structural Relaxation in Bacteriorhodopsin’s Primary Photoproduct. ACTA ACUST UNITED AC 1985. [DOI: 10.1007/978-3-642-47541-2_50] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
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